oh-my-codex 0.12.4 → 0.12.6

package/dist/wiki/storage.d.ts

@@ -0,0 +1,33 @@
+/**
+ * Wiki Storage
+ *
+ * File I/O layer for the OMX wiki knowledge base.
+ */
+import { type WikiLogEntry, type WikiPage, type WikiPageFrontmatter } from './types.js';
+export declare function getWikiDir(root: string): string;
+export declare function ensureWikiDir(root: string): string;
+export declare function withWikiLock<T>(root: string, fn: () => T): T;
+export declare function parseFrontmatter(raw: string): {
+    frontmatter: WikiPageFrontmatter;
+    content: string;
+} | null;
+export declare function serializePage(page: WikiPage): string;
+export declare function readPage(root: string, filename: string): WikiPage | null;
+export declare function listPages(root: string): string[];
+export declare function readAllPages(root: string): WikiPage[];
+export declare function readIndex(root: string): string | null;
+export declare function readLog(root: string): string | null;
+export declare function writePageUnsafe(root: string, page: WikiPage, options?: {
+    allowReserved?: boolean;
+}): void;
+export declare function deletePageUnsafe(root: string, filename: string): boolean;
+export declare function updateIndexUnsafe(root: string): void;
+export declare function appendLogUnsafe(root: string, entry: WikiLogEntry): void;
+export declare function writePage(root: string, page: WikiPage, options?: {
+    allowReserved?: boolean;
+}): void;
+export declare function deletePage(root: string, filename: string): boolean;
+export declare function appendLog(root: string, entry: WikiLogEntry): void;
+export declare function titleToSlug(title: string): string;
+export declare function normalizeWikiPageName(page: string): string;
+//# sourceMappingURL=storage.d.ts.map

package/dist/wiki/storage.d.ts.map

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package/dist/wiki/storage.js

@@ -0,0 +1,321 @@
+/**
+ * Wiki Storage
+ *
+ * File I/O layer for the OMX wiki knowledge base.
+ */
+import { existsSync, mkdirSync, readFileSync, readdirSync, renameSync, rmSync, unlinkSync, writeFileSync, } from 'fs';
+import { dirname, join, resolve, sep } from 'path';
+import { omxWikiDir } from '../utils/paths.js';
+import { WIKI_SCHEMA_VERSION, } from './types.js';
+const INDEX_FILE = 'index.md';
+const LOG_FILE = 'log.md';
+const ENVIRONMENT_FILE = 'environment.md';
+const RESERVED_FILES = new Set([INDEX_FILE, LOG_FILE, ENVIRONMENT_FILE]);
+function atomicWriteFileSync(path, content) {
+    mkdirSync(dirname(path), { recursive: true });
+    const tmpPath = `${path}.${process.pid}.${Date.now()}.tmp`;
+    writeFileSync(tmpPath, content, 'utf8');
+    renameSync(tmpPath, path);
+}
+function lockPathFor(path) {
+    return `${path}.lock`;
+}
+function sleepSync(ms) {
+    Atomics.wait(new Int32Array(new SharedArrayBuffer(4)), 0, 0, ms);
+}
+function withFileLockSync(lockPath, fn, options = {}) {
+    const timeoutMs = options.timeoutMs ?? 5_000;
+    const retryDelayMs = options.retryDelayMs ?? 50;
+    const deadline = Date.now() + timeoutMs;
+    while (true) {
+        try {
+            mkdirSync(lockPath, { recursive: false });
+            break;
+        }
+        catch (error) {
+            const code = error.code;
+            if (code !== 'EEXIST')
+                throw error;
+            if (Date.now() >= deadline) {
+                throw new Error(`Timed out acquiring wiki lock at ${lockPath}`);
+            }
+            sleepSync(retryDelayMs);
+        }
+    }
+    try {
+        return fn();
+    }
+    finally {
+        rmSync(lockPath, { recursive: true, force: true });
+    }
+}
+export function getWikiDir(root) {
+    return omxWikiDir(root);
+}
+export function ensureWikiDir(root) {
+    const wikiDir = getWikiDir(root);
+    mkdirSync(wikiDir, { recursive: true });
+    const omxRoot = join(root, '.omx');
+    mkdirSync(omxRoot, { recursive: true });
+    const gitignorePath = join(omxRoot, '.gitignore');
+    if (existsSync(gitignorePath)) {
+        const content = readFileSync(gitignorePath, 'utf8');
+        if (!content.includes('wiki/')) {
+            atomicWriteFileSync(gitignorePath, `${content.trimEnd()}\nwiki/\n`);
+        }
+    }
+    else {
+        atomicWriteFileSync(gitignorePath, 'wiki/\n');
+    }
+    return wikiDir;
+}
+export function withWikiLock(root, fn) {
+    const wikiDir = ensureWikiDir(root);
+    return withFileLockSync(lockPathFor(join(wikiDir, '.wiki-lock')), fn, {
+        timeoutMs: 5_000,
+        retryDelayMs: 50,
+    });
+}
+export function parseFrontmatter(raw) {
+    const normalized = raw.replace(/\r\n/g, '\n');
+    const match = normalized.match(/^---\n([\s\S]*?)\n---\n([\s\S]*)$/);
+    if (!match)
+        return null;
+    const yamlBlock = match[1];
+    const content = match[2];
+    try {
+        const fm = parseSimpleYaml(yamlBlock);
+        return {
+            frontmatter: {
+                title: String(fm.title || ''),
+                tags: parseYamlArray(fm.tags),
+                created: String(fm.created || new Date().toISOString()),
+                updated: String(fm.updated || new Date().toISOString()),
+                sources: parseYamlArray(fm.sources),
+                links: parseYamlArray(fm.links),
+                category: (fm.category || 'reference'),
+                confidence: (fm.confidence || 'medium'),
+                schemaVersion: Number(fm.schemaVersion) || WIKI_SCHEMA_VERSION,
+            },
+            content,
+        };
+    }
+    catch {
+        return null;
+    }
+}
+function parseSimpleYaml(yaml) {
+    const result = {};
+    for (const line of yaml.split('\n')) {
+        const colonIdx = line.indexOf(':');
+        if (colonIdx === -1)
+            continue;
+        const key = line.slice(0, colonIdx).trim();
+        let value = line.slice(colonIdx + 1).trim();
+        if ((value.startsWith('"') && value.endsWith('"')) || (value.startsWith("'") && value.endsWith("'"))) {
+            value = value
+                .slice(1, -1)
+                .replace(/\\(\\|"|n|r)/g, (_, ch) => {
+                if (ch === 'n')
+                    return '\n';
+                if (ch === 'r')
+                    return '\r';
+                return ch;
+            });
+        }
+        if (key)
+            result[key] = value;
+    }
+    return result;
+}
+function parseYamlArray(value) {
+    if (!value)
+        return [];
+    const trimmed = value.trim();
+    if (trimmed.startsWith('[') && trimmed.endsWith(']')) {
+        return trimmed
+            .slice(1, -1)
+            .split(',')
+            .map((entry) => entry
+            .trim()
+            .replace(/^["']|["']$/g, '')
+            .replace(/\\(\\|"|n|r)/g, (_, ch) => {
+            if (ch === 'n')
+                return '\n';
+            if (ch === 'r')
+                return '\r';
+            return ch;
+        }))
+            .filter(Boolean);
+    }
+    return trimmed ? [trimmed] : [];
+}
+function escapeYaml(value) {
+    return value
+        .replace(/\\/g, '\\\\')
+        .replace(/"/g, '\\"')
+        .replace(/\n/g, '\\n')
+        .replace(/\r/g, '\\r');
+}
+export function serializePage(page) {
+    const fm = page.frontmatter;
+    const yaml = [
+        `title: "${escapeYaml(fm.title)}"`,
+        `tags: [${fm.tags.map((tag) => `"${escapeYaml(tag)}"`).join(', ')}]`,
+        `created: ${fm.created}`,
+        `updated: ${fm.updated}`,
+        `sources: [${fm.sources.map((source) => `"${escapeYaml(source)}"`).join(', ')}]`,
+        `links: [${fm.links.map((link) => `"${escapeYaml(link)}"`).join(', ')}]`,
+        `category: ${fm.category}`,
+        `confidence: ${fm.confidence}`,
+        `schemaVersion: ${fm.schemaVersion}`,
+    ].join('\n');
+    return `---\n${yaml}\n---\n${page.content}`;
+}
+function safeWikiPath(wikiDir, filename) {
+    if (filename.includes('/') || filename.includes('\\') || filename.includes('..')) {
+        return null;
+    }
+    const filePath = join(wikiDir, filename);
+    const resolved = resolve(filePath);
+    const resolvedWikiDir = resolve(wikiDir);
+    if (resolved !== resolvedWikiDir && !resolved.startsWith(`${resolvedWikiDir}${sep}`)) {
+        return null;
+    }
+    return filePath;
+}
+export function readPage(root, filename) {
+    const wikiDir = getWikiDir(root);
+    const filePath = safeWikiPath(wikiDir, filename);
+    if (!filePath || !existsSync(filePath))
+        return null;
+    try {
+        const parsed = parseFrontmatter(readFileSync(filePath, 'utf8'));
+        if (!parsed)
+            return null;
+        return {
+            filename,
+            frontmatter: parsed.frontmatter,
+            content: parsed.content,
+        };
+    }
+    catch {
+        return null;
+    }
+}
+export function listPages(root) {
+    const wikiDir = getWikiDir(root);
+    if (!existsSync(wikiDir))
+        return [];
+    return readdirSync(wikiDir)
+        .filter((entry) => entry.endsWith('.md') && !RESERVED_FILES.has(entry))
+        .sort();
+}
+export function readAllPages(root) {
+    return listPages(root)
+        .map((filename) => readPage(root, filename))
+        .filter((page) => page !== null);
+}
+export function readIndex(root) {
+    const indexPath = join(getWikiDir(root), INDEX_FILE);
+    return existsSync(indexPath) ? readFileSync(indexPath, 'utf8') : null;
+}
+export function readLog(root) {
+    const logPath = join(getWikiDir(root), LOG_FILE);
+    return existsSync(logPath) ? readFileSync(logPath, 'utf8') : null;
+}
+export function writePageUnsafe(root, page, options = {}) {
+    if (!options.allowReserved && RESERVED_FILES.has(page.filename)) {
+        throw new Error(`Cannot write to reserved wiki file: ${page.filename}`);
+    }
+    const wikiDir = ensureWikiDir(root);
+    const filePath = safeWikiPath(wikiDir, page.filename);
+    if (!filePath)
+        throw new Error(`Invalid wiki page filename: ${page.filename}`);
+    atomicWriteFileSync(filePath, serializePage(page));
+}
+export function deletePageUnsafe(root, filename) {
+    if (RESERVED_FILES.has(filename)) {
+        return false;
+    }
+    const wikiDir = getWikiDir(root);
+    const filePath = safeWikiPath(wikiDir, filename);
+    if (!filePath || !existsSync(filePath))
+        return false;
+    unlinkSync(filePath);
+    return true;
+}
+export function updateIndexUnsafe(root) {
+    const pages = readAllPages(root);
+    const byCategory = new Map();
+    for (const page of pages) {
+        const category = page.frontmatter.category;
+        if (!byCategory.has(category))
+            byCategory.set(category, []);
+        byCategory.get(category)?.push(page);
+    }
+    const lines = [
+        '# Wiki Index',
+        '',
+        `> ${pages.length} pages | Last updated: ${new Date().toISOString()}`,
+        '',
+    ];
+    for (const category of [...byCategory.keys()].sort()) {
+        lines.push(`## ${category}`);
+        lines.push('');
+        for (const page of byCategory.get(category) ?? []) {
+            const summaryLine = page.content.split('\n').find((line) => line.trim().length > 0)?.trim() || '';
+            const summary = summaryLine.length > 80 ? `${summaryLine.slice(0, 77)}...` : summaryLine;
+            lines.push(`- [${page.frontmatter.title}](${page.filename}) — ${summary}`);
+        }
+        lines.push('');
+    }
+    atomicWriteFileSync(join(ensureWikiDir(root), INDEX_FILE), lines.join('\n'));
+}
+export function appendLogUnsafe(root, entry) {
+    const wikiDir = ensureWikiDir(root);
+    const logPath = join(wikiDir, LOG_FILE);
+    const existing = existsSync(logPath) ? readFileSync(logPath, 'utf8') : '# Wiki Log\n\n';
+    const logLine = `## [${entry.timestamp}] ${entry.operation}\n`
+        + `- **Pages:** ${entry.pagesAffected.join(', ') || 'none'}\n`
+        + `- **Summary:** ${entry.summary}\n\n`;
+    atomicWriteFileSync(logPath, `${existing}${logLine}`);
+}
+export function writePage(root, page, options = {}) {
+    withWikiLock(root, () => {
+        writePageUnsafe(root, page, options);
+        updateIndexUnsafe(root);
+    });
+}
+export function deletePage(root, filename) {
+    return withWikiLock(root, () => {
+        const deleted = deletePageUnsafe(root, filename);
+        if (deleted)
+            updateIndexUnsafe(root);
+        return deleted;
+    });
+}
+export function appendLog(root, entry) {
+    withWikiLock(root, () => {
+        appendLogUnsafe(root, entry);
+    });
+}
+export function titleToSlug(title) {
+    const base = title
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, '-')
+        .replace(/^-|-$/g, '')
+        .slice(0, 64);
+    if (!base) {
+        let hash = 0;
+        for (let index = 0; index < title.length; index += 1) {
+            hash = ((hash << 5) - hash + title.charCodeAt(index)) | 0;
+        }
+        return `page-${Math.abs(hash).toString(16).padStart(8, '0')}.md`;
+    }
+    return `${base}.md`;
+}
+export function normalizeWikiPageName(page) {
+    return page.endsWith('.md') ? page : `${page}.md`;
+}
+//# sourceMappingURL=storage.js.map

package/dist/wiki/storage.js.map

@@ -0,0 +1 @@
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package/dist/wiki/types.d.ts

@@ -0,0 +1,83 @@
+/**
+ * Wiki Types
+ *
+ * Type definitions for the OMX wiki knowledge layer.
+ */
+export declare const WIKI_SCHEMA_VERSION = 1;
+export type WikiCategory = 'architecture' | 'decision' | 'pattern' | 'debugging' | 'environment' | 'session-log' | 'reference' | 'convention';
+export interface WikiPageFrontmatter {
+    title: string;
+    tags: string[];
+    created: string;
+    updated: string;
+    sources: string[];
+    links: string[];
+    category: WikiCategory;
+    confidence: 'high' | 'medium' | 'low';
+    schemaVersion: number;
+}
+export interface WikiPage {
+    filename: string;
+    frontmatter: WikiPageFrontmatter;
+    content: string;
+}
+export interface WikiLogEntry {
+    timestamp: string;
+    operation: 'ingest' | 'query' | 'lint' | 'add' | 'delete' | 'session-start' | 'session-end';
+    pagesAffected: string[];
+    summary: string;
+}
+export interface WikiIngestInput {
+    title: string;
+    content: string;
+    tags: string[];
+    category: WikiCategory;
+    sources?: string[];
+    confidence?: 'high' | 'medium' | 'low';
+}
+export interface WikiIngestResult {
+    created: string[];
+    updated: string[];
+    totalAffected: number;
+}
+export interface WikiQueryOptions {
+    tags?: string[];
+    category?: WikiCategory;
+    limit?: number;
+    logQuery?: boolean;
+}
+export interface WikiQueryMatch {
+    page: WikiPage;
+    snippet: string;
+    score: number;
+}
+export type WikiLintSeverity = 'error' | 'warning' | 'info';
+export type WikiLintIssueType = 'orphan' | 'stale' | 'broken-ref' | 'low-confidence' | 'oversized' | 'structural-contradiction';
+export interface WikiLintIssue {
+    page: string;
+    severity: WikiLintSeverity;
+    type: WikiLintIssueType;
+    message: string;
+}
+export interface WikiLintReport {
+    issues: WikiLintIssue[];
+    stats: {
+        totalPages: number;
+        orphanCount: number;
+        staleCount: number;
+        brokenRefCount: number;
+        lowConfidenceCount: number;
+        oversizedCount: number;
+        contradictionCount: number;
+    };
+}
+export interface WikiConfig {
+    enabled: boolean;
+    autoCapture: boolean;
+    maxContextLines: number;
+    staleDays: number;
+    maxPageSize: number;
+    feedProjectMemoryOnStart: boolean;
+}
+export declare const DEFAULT_WIKI_CONFIG: WikiConfig;
+//# sourceMappingURL=types.d.ts.map

package/dist/wiki/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/wiki/types.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,eAAO,MAAM,mBAAmB,IAAI,CAAC;AAErC,MAAM,MAAM,YAAY,GACpB,cAAc,GACd,UAAU,GACV,SAAS,GACT,WAAW,GACX,aAAa,GACb,aAAa,GACb,WAAW,GACX,YAAY,CAAC;AAEjB,MAAM,WAAW,mBAAmB;IAClC,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,QAAQ,EAAE,YAAY,CAAC;IACvB,UAAU,EAAE,MAAM,GAAG,QAAQ,GAAG,KAAK,CAAC;IACtC,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,MAAM,WAAW,QAAQ;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,mBAAmB,CAAC;IACjC,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,QAAQ,GAAG,OAAO,GAAG,MAAM,GAAG,KAAK,GAAG,QAAQ,GAAG,eAAe,GAAG,aAAa,CAAC;IAC5F,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,QAAQ,EAAE,YAAY,CAAC;IACvB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,KAAK,CAAC;CACxC;AAED,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,MAAM,WAAW,gBAAgB;IAC/B,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,QAAQ,CAAC,EAAE,YAAY,CAAC;IACxB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,QAAQ,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,MAAM,gBAAgB,GAAG,OAAO,GAAG,SAAS,GAAG,MAAM,CAAC;AAE5D,MAAM,MAAM,iBAAiB,GACzB,QAAQ,GACR,OAAO,GACP,YAAY,GACZ,gBAAgB,GAChB,WAAW,GACX,0BAA0B,CAAC;AAE/B,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,gBAAgB,CAAC;IAC3B,IAAI,EAAE,iBAAiB,CAAC;IACxB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,aAAa,EAAE,CAAC;IACxB,KAAK,EAAE;QACL,UAAU,EAAE,MAAM,CAAC;QACnB,WAAW,EAAE,MAAM,CAAC;QACpB,UAAU,EAAE,MAAM,CAAC;QACnB,cAAc,EAAE,MAAM,CAAC;QACvB,kBAAkB,EAAE,MAAM,CAAC;QAC3B,cAAc,EAAE,MAAM,CAAC;QACvB,kBAAkB,EAAE,MAAM,CAAC;KAC5B,CAAC;CACH;AAED,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,OAAO,CAAC;IACjB,WAAW,EAAE,OAAO,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,wBAAwB,EAAE,OAAO,CAAC;CACnC;AAED,eAAO,MAAM,mBAAmB,EAAE,UAOjC,CAAC"}

package/dist/wiki/types.js

@@ -0,0 +1,15 @@
+/**
+ * Wiki Types
+ *
+ * Type definitions for the OMX wiki knowledge layer.
+ */
+export const WIKI_SCHEMA_VERSION = 1;
+export const DEFAULT_WIKI_CONFIG = {
+    enabled: true,
+    autoCapture: true,
+    maxContextLines: 30,
+    staleDays: 30,
+    maxPageSize: 10_240,
+    feedProjectMemoryOnStart: false,
+};
+//# sourceMappingURL=types.js.map

package/dist/wiki/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/wiki/types.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,MAAM,CAAC,MAAM,mBAAmB,GAAG,CAAC,CAAC;AAwGrC,MAAM,CAAC,MAAM,mBAAmB,GAAe;IAC7C,OAAO,EAAE,IAAI;IACb,WAAW,EAAE,IAAI;IACjB,eAAe,EAAE,EAAE;IACnB,SAAS,EAAE,EAAE;IACb,WAAW,EAAE,MAAM;IACnB,wBAAwB,EAAE,KAAK;CAChC,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "oh-my-codex",
-  "version": "0.12.4",
+  "version": "0.12.6",
   "description": "Multi-agent orchestration layer for OpenAI Codex CLI",
   "type": "module",
   "main": "dist/index.js",
@@ -24,6 +24,8 @@
     "test:explore": "cargo test -p omx-explore-harness && node --test dist/cli/__tests__/explore.test.js dist/hooks/__tests__/explore-routing.test.js dist/hooks/__tests__/explore-sparkshell-guidance-contract.test.js",
     "test:team:cross-rebase-smoke": "npm run build && node --test dist/team/__tests__/cross-rebase-smoke.test.js",
     "test:team:cross-rebase-smoke:compiled": "node --test dist/team/__tests__/cross-rebase-smoke.test.js",
+    "test:recent-bug-regressions": "npm run build && npm run test:recent-bug-regressions:compiled",
+    "test:recent-bug-regressions:compiled": "node --test dist/hooks/__tests__/keyword-detector.test.js dist/scripts/__tests__/codex-native-hook.test.js dist/cli/__tests__/launch-fallback.test.js dist/team/__tests__/runtime.test.js dist/team/__tests__/hardening-e2e.test.js",
     "test:node": "node dist/scripts/run-test-files.js dist",
     "test:node:cross-platform": "npm run test:node",
     "test": "npm run build && npm run test:node && node dist/scripts/generate-catalog-docs.js --check",

package/skills/configure-notifications/SKILL.md

@@ -257,6 +257,7 @@ Deterministic precedence:
 ### Reply listener
 - `notifications.reply.enabled`
 - env gates: `OMX_REPLY_ENABLED=true`, and for Discord `OMX_REPLY_DISCORD_USER_IDS=...`
+- For Discord bot replies, an authorized operator can reply with exact-match `status` to a tracked OMX notification to receive a bounded read-only session summary. This is a reply-thread-scoped status probe, not a general remote control surface.
 
 ## Step 6: Disable All Notifications
 

package/skills/doctor/SKILL.md

@@ -7,6 +7,17 @@ description: Diagnose and fix oh-my-codex installation issues
 
 Note: All `~/.codex/...` paths in this guide respect `CODEX_HOME` when that environment variable is set.
 
+## Canonical skill root
+
+OMX installs skills to `${CODEX_HOME:-~/.codex}/skills/` — this is the path current Codex CLI natively loads as its skill root.
+
+`~/.agents/skills/` is a **historical legacy path** from an older Codex CLI release, before Codex settled on `~/.codex` as its home directory. Current Codex CLI and OMX no longer write there.
+
+**In a mixed OMX + plain Codex environment:**
+- **Use**: `${CODEX_HOME:-~/.codex}/skills/` (user scope) or `.codex/skills/` (project scope)
+- **Clean up if present**: `~/.agents/skills/` — if this still exists alongside the canonical root, Codex's Enable/Disable Skills UI will show duplicate entries for any skill present in both trees
+- **Interop rule**: OMX writes only to the canonical path; archive or remove `~/.agents/skills/` once you have confirmed `${CODEX_HOME:-~/.codex}/skills/` is your active root
+
 ## Task: Run Installation Diagnostics
 
 You are the OMX Doctor - diagnose and fix installation issues.

package/skills/omx-setup/SKILL.md

@@ -44,7 +44,7 @@ Supported setup flags (current implementation):
 - Scope targets:
   - `user`: user directories (`~/.codex`, `~/.codex/skills`, `~/.omx/agents`)
   - `project`: local directories (`./.codex`, `./.codex/skills`, `./.omx/agents`)
-- Migration hint: in `user` scope, if historical `~/.agents/skills` still exists alongside `${CODEX_HOME:-~/.codex}/skills`, current setup prints a cleanup hint because Codex may show duplicate skill entries until the legacy tree is removed or archived.
+- Migration hint: in `user` scope, if historical `~/.agents/skills` still exists alongside `${CODEX_HOME:-~/.codex}/skills`, current setup prints a cleanup hint. **Why the paths differ**: `${CODEX_HOME:-~/.codex}/skills/` is the path current Codex CLI natively loads as its skill root; `~/.agents/skills/` was the skill root in an older Codex CLI release before `~/.codex` became the standard home directory. OMX writes only to the canonical `${CODEX_HOME:-~/.codex}/skills/` path. When both directories exist simultaneously, Codex discovers skills from both trees and may show duplicate entries in Enable/Disable Skills. Archive or remove `~/.agents/skills/` to resolve this.
 - If persisted scope is `project`, `omx` launch automatically uses `CODEX_HOME=./.codex` unless user explicitly overrides `CODEX_HOME`.
 - With `--force`, AGENTS overwrite may still be skipped if an active OMX session is detected (safety guard).
 - Legacy persisted scope values (`project-local`) are automatically migrated to `project` with a one-time warning.

package/skills/wiki/SKILL.md

@@ -0,0 +1,57 @@
+---
+name: wiki
+description: Persistent markdown project wiki stored under .omx/wiki with keyword search and lifecycle capture
+triggers: ["wiki add", "wiki lint", "wiki query", "wiki read", "wiki delete"]
+---
+
+# Wiki
+
+Persistent, self-maintained markdown knowledge base for project and session knowledge.
+
+## Operations
+
+### Ingest
+```text
+wiki_ingest({ title: "Auth Architecture", content: "...", tags: ["auth", "architecture"], category: "architecture" })
+```
+
+### Query
+```text
+wiki_query({ query: "authentication", tags: ["auth"], category: "architecture" })
+```
+
+### Lint
+```text
+wiki_lint()
+```
+
+### Quick Add
+```text
+wiki_add({ title: "Page Title", content: "...", tags: ["tag1"], category: "decision" })
+```
+
+### List / Read / Delete
+```text
+wiki_list()
+wiki_read({ page: "auth-architecture" })
+wiki_delete({ page: "outdated-page" })
+wiki_refresh()
+```
+
+## Categories
+`architecture`, `decision`, `pattern`, `debugging`, `environment`, `session-log`, `reference`, `convention`
+
+## Storage
+- Pages: `.omx/wiki/*.md`
+- Index: `.omx/wiki/index.md`
+- Log: `.omx/wiki/log.md`
+
+## Cross-References
+Use `[[page-name]]` wiki-link syntax to create cross-references between pages.
+
+## Auto-Capture
+At session end, discoveries can be captured as `session-log-*` pages. Configure via `wiki.autoCapture` in `.omx-config.json`.
+
+## Hard Constraints
+- No vector embeddings — query uses keyword + tag matching only
+- Wiki files remain local project state under `.omx/wiki/`