oh-my-codex 0.10.2 → 0.10.3

package/dist/cli/autoresearch-intake.js

@@ -0,0 +1,318 @@
+import { existsSync } from 'node:fs';
+import { mkdir, readdir, readFile, stat, writeFile } from 'node:fs/promises';
+import { join } from 'node:path';
+import { parseSandboxContract, slugifyMissionName } from '../autoresearch/contracts.js';
+const BLOCKED_EVALUATOR_PATTERNS = [
+    /<[^>]+>/i,
+    /\bTODO\b/i,
+    /\bTBD\b/i,
+    /REPLACE_ME/i,
+    /CHANGEME/i,
+    /your-command-here/i,
+];
+const DEEP_INTERVIEW_DRAFT_PREFIX = 'deep-interview-autoresearch-';
+const AUTORESEARCH_ARTIFACT_DIR_PREFIX = 'autoresearch-';
+export const AUTORESEARCH_DEEP_INTERVIEW_RESULT_KIND = 'omx.autoresearch.deep-interview/v1';
+function defaultDraftEvaluator(topic) {
+    const detail = topic.trim() || 'the mission';
+    return `TODO replace with evaluator command for: ${detail}`;
+}
+function escapeRegex(value) {
+    return value.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
+}
+function extractMarkdownSection(markdown, heading) {
+    const pattern = new RegExp(`^##\\s+${escapeRegex(heading)}\\s*$`, 'im');
+    const match = pattern.exec(markdown);
+    if (!match || match.index < 0)
+        return '';
+    const start = match.index + match[0].length;
+    const remainder = markdown.slice(start);
+    const nextHeading = remainder.search(/^##\s+/m);
+    return (nextHeading >= 0 ? remainder.slice(0, nextHeading) : remainder).trim();
+}
+function parseLaunchReadinessSection(section) {
+    const normalized = section.trim();
+    if (!normalized) {
+        return { launchReady: false, blockedReasons: ['Launch readiness section is missing.'] };
+    }
+    const launchReady = /Launch-ready:\s*yes/i.test(normalized);
+    const blockedReasons = launchReady
+        ? []
+        : normalized
+            .split(/\r?\n/)
+            .map((line) => line.trim())
+            .filter((line) => /^-\s+/.test(line))
+            .map((line) => line.replace(/^-\s+/, '').trim())
+            .filter(Boolean);
+    return { launchReady, blockedReasons };
+}
+function normalizeKeepPolicy(raw) {
+    return raw.trim().toLowerCase() === 'pass_only' ? 'pass_only' : 'score_improvement';
+}
+function buildArtifactDir(repoRoot, slug) {
+    return join(repoRoot, '.omx', 'specs', `${AUTORESEARCH_ARTIFACT_DIR_PREFIX}${slug}`);
+}
+function buildDraftArtifactPath(repoRoot, slug) {
+    return join(repoRoot, '.omx', 'specs', `${DEEP_INTERVIEW_DRAFT_PREFIX}${slug}.md`);
+}
+function buildResultPath(repoRoot, slug) {
+    return join(buildArtifactDir(repoRoot, slug), 'result.json');
+}
+export function buildMissionContent(topic) {
+    return `# Mission\n\n${topic}\n`;
+}
+export function buildSandboxContent(evaluatorCommand, keepPolicy) {
+    const safeCommand = evaluatorCommand.replace(/[\r\n]/g, ' ').trim();
+    return `---\nevaluator:\n  command: ${safeCommand}\n  format: json\n  keep_policy: ${keepPolicy}\n---\n`;
+}
+export function isLaunchReadyEvaluatorCommand(command) {
+    const normalized = command.trim();
+    if (!normalized) {
+        return false;
+    }
+    return !BLOCKED_EVALUATOR_PATTERNS.some((pattern) => pattern.test(normalized));
+}
+function buildLaunchReadinessSection(launchReady, blockedReasons) {
+    if (launchReady) {
+        return 'Launch-ready: yes\n- Evaluator command is concrete and can be compiled into sandbox.md';
+    }
+    return [
+        'Launch-ready: no',
+        ...blockedReasons.map((reason) => `- ${reason}`),
+    ].join('\n');
+}
+export function buildAutoresearchDraftArtifactContent(compileTarget, seedInputs, launchReady, blockedReasons) {
+    const seedTopic = seedInputs.topic?.trim() || '(none)';
+    const seedEvaluator = seedInputs.evaluatorCommand?.trim() || '(none)';
+    const seedKeepPolicy = seedInputs.keepPolicy || '(none)';
+    const seedSlug = seedInputs.slug?.trim() || '(none)';
+    return [
+        `# Deep Interview Autoresearch Draft — ${compileTarget.slug}`,
+        '',
+        '## Mission Draft',
+        compileTarget.topic,
+        '',
+        '## Evaluator Draft',
+        compileTarget.evaluatorCommand,
+        '',
+        '## Keep Policy',
+        compileTarget.keepPolicy,
+        '',
+        '## Session Slug',
+        compileTarget.slug,
+        '',
+        '## Seed Inputs',
+        `- topic: ${seedTopic}`,
+        `- evaluator: ${seedEvaluator}`,
+        `- keep_policy: ${seedKeepPolicy}`,
+        `- slug: ${seedSlug}`,
+        '',
+        '## Launch Readiness',
+        buildLaunchReadinessSection(launchReady, blockedReasons),
+        '',
+        '## Confirmation Bridge',
+        '- refine further',
+        '- launch',
+        '',
+    ].join('\n');
+}
+export async function writeAutoresearchDraftArtifact(input) {
+    const topic = input.topic.trim();
+    if (!topic) {
+        throw new Error('Research topic is required.');
+    }
+    const slug = slugifyMissionName(input.slug?.trim() || topic);
+    const evaluatorCommand = (input.evaluatorCommand?.trim() || defaultDraftEvaluator(topic)).replace(/[\r\n]+/g, ' ').trim();
+    const compileTarget = {
+        topic,
+        evaluatorCommand,
+        keepPolicy: input.keepPolicy,
+        slug,
+        repoRoot: input.repoRoot,
+    };
+    const blockedReasons = [];
+    if (!isLaunchReadyEvaluatorCommand(evaluatorCommand)) {
+        blockedReasons.push('Evaluator command is still a placeholder/template and must be replaced before launch.');
+    }
+    if (blockedReasons.length === 0) {
+        parseSandboxContract(buildSandboxContent(evaluatorCommand, input.keepPolicy));
+    }
+    const launchReady = blockedReasons.length === 0;
+    const specsDir = join(input.repoRoot, '.omx', 'specs');
+    await mkdir(specsDir, { recursive: true });
+    const path = buildDraftArtifactPath(input.repoRoot, slug);
+    const content = buildAutoresearchDraftArtifactContent(compileTarget, input.seedInputs || {}, launchReady, blockedReasons);
+    await writeFile(path, content, 'utf-8');
+    return { compileTarget, path, content, launchReady, blockedReasons };
+}
+export async function writeAutoresearchDeepInterviewArtifacts(input) {
+    const draft = await writeAutoresearchDraftArtifact(input);
+    const artifactDir = buildArtifactDir(input.repoRoot, draft.compileTarget.slug);
+    await mkdir(artifactDir, { recursive: true });
+    const missionArtifactPath = join(artifactDir, 'mission.md');
+    const sandboxArtifactPath = join(artifactDir, 'sandbox.md');
+    const resultPath = buildResultPath(input.repoRoot, draft.compileTarget.slug);
+    const missionContent = buildMissionContent(draft.compileTarget.topic);
+    const sandboxContent = buildSandboxContent(draft.compileTarget.evaluatorCommand, draft.compileTarget.keepPolicy);
+    parseSandboxContract(sandboxContent);
+    await writeFile(missionArtifactPath, missionContent, 'utf-8');
+    await writeFile(sandboxArtifactPath, sandboxContent, 'utf-8');
+    const persisted = {
+        kind: AUTORESEARCH_DEEP_INTERVIEW_RESULT_KIND,
+        compileTarget: draft.compileTarget,
+        draftArtifactPath: draft.path,
+        missionArtifactPath,
+        sandboxArtifactPath,
+        launchReady: draft.launchReady,
+        blockedReasons: draft.blockedReasons,
+    };
+    await writeFile(resultPath, `${JSON.stringify(persisted, null, 2)}\n`, 'utf-8');
+    return {
+        compileTarget: draft.compileTarget,
+        draftArtifactPath: draft.path,
+        missionArtifactPath,
+        sandboxArtifactPath,
+        resultPath,
+        missionContent,
+        sandboxContent,
+        launchReady: draft.launchReady,
+        blockedReasons: draft.blockedReasons,
+    };
+}
+function parseDraftArtifactContent(content, repoRoot, draftArtifactPath) {
+    const missionDraft = extractMarkdownSection(content, 'Mission Draft').trim();
+    const evaluatorDraft = extractMarkdownSection(content, 'Evaluator Draft').trim().replace(/[\r\n]+/g, ' ');
+    const keepPolicyRaw = extractMarkdownSection(content, 'Keep Policy').trim();
+    const slugRaw = extractMarkdownSection(content, 'Session Slug').trim();
+    const launchReadiness = parseLaunchReadinessSection(extractMarkdownSection(content, 'Launch Readiness'));
+    if (!missionDraft) {
+        throw new Error(`Missing Mission Draft section in ${draftArtifactPath}`);
+    }
+    if (!evaluatorDraft) {
+        throw new Error(`Missing Evaluator Draft section in ${draftArtifactPath}`);
+    }
+    const slug = slugifyMissionName(slugRaw || missionDraft);
+    const compileTarget = {
+        topic: missionDraft,
+        evaluatorCommand: evaluatorDraft,
+        keepPolicy: normalizeKeepPolicy(keepPolicyRaw || 'score_improvement'),
+        slug,
+        repoRoot,
+    };
+    const missionContent = buildMissionContent(compileTarget.topic);
+    const sandboxContent = buildSandboxContent(compileTarget.evaluatorCommand, compileTarget.keepPolicy);
+    parseSandboxContract(sandboxContent);
+    return {
+        compileTarget,
+        draftArtifactPath,
+        missionArtifactPath: join(buildArtifactDir(repoRoot, slug), 'mission.md'),
+        sandboxArtifactPath: join(buildArtifactDir(repoRoot, slug), 'sandbox.md'),
+        resultPath: buildResultPath(repoRoot, slug),
+        missionContent,
+        sandboxContent,
+        launchReady: launchReadiness.launchReady,
+        blockedReasons: launchReadiness.blockedReasons,
+    };
+}
+async function readPersistedResult(resultPath) {
+    const raw = await readFile(resultPath, 'utf-8');
+    const parsed = JSON.parse(raw);
+    if (parsed.kind !== AUTORESEARCH_DEEP_INTERVIEW_RESULT_KIND) {
+        throw new Error(`Unsupported autoresearch deep-interview result payload: ${resultPath}`);
+    }
+    if (!parsed.compileTarget) {
+        throw new Error(`Missing compileTarget in ${resultPath}`);
+    }
+    const compileTarget = parsed.compileTarget;
+    const draftArtifactPath = typeof parsed.draftArtifactPath === 'string' ? parsed.draftArtifactPath : buildDraftArtifactPath(compileTarget.repoRoot, compileTarget.slug);
+    const missionArtifactPath = typeof parsed.missionArtifactPath === 'string' ? parsed.missionArtifactPath : join(buildArtifactDir(compileTarget.repoRoot, compileTarget.slug), 'mission.md');
+    const sandboxArtifactPath = typeof parsed.sandboxArtifactPath === 'string' ? parsed.sandboxArtifactPath : join(buildArtifactDir(compileTarget.repoRoot, compileTarget.slug), 'sandbox.md');
+    const missionContent = await readFile(missionArtifactPath, 'utf-8');
+    const sandboxContent = await readFile(sandboxArtifactPath, 'utf-8');
+    parseSandboxContract(sandboxContent);
+    return {
+        compileTarget,
+        draftArtifactPath,
+        missionArtifactPath,
+        sandboxArtifactPath,
+        resultPath,
+        missionContent,
+        sandboxContent,
+        launchReady: parsed.launchReady === true,
+        blockedReasons: Array.isArray(parsed.blockedReasons)
+            ? parsed.blockedReasons.filter((value) => typeof value === 'string' && value.trim().length > 0)
+            : [],
+    };
+}
+async function listMarkdownDraftPaths(repoRoot) {
+    const specsDir = join(repoRoot, '.omx', 'specs');
+    if (!existsSync(specsDir))
+        return [];
+    const entries = await readdir(specsDir, { withFileTypes: true });
+    return entries
+        .filter((entry) => entry.isFile() && entry.name.startsWith(DEEP_INTERVIEW_DRAFT_PREFIX) && entry.name.endsWith('.md'))
+        .map((entry) => join(specsDir, entry.name));
+}
+export async function listAutoresearchDeepInterviewResultPaths(repoRoot) {
+    const specsDir = join(repoRoot, '.omx', 'specs');
+    if (!existsSync(specsDir))
+        return [];
+    const entries = await readdir(specsDir, { withFileTypes: true });
+    const resultPaths = entries
+        .filter((entry) => entry.isDirectory() && entry.name.startsWith(AUTORESEARCH_ARTIFACT_DIR_PREFIX))
+        .map((entry) => join(specsDir, entry.name, 'result.json'))
+        .filter((path) => existsSync(path));
+    return resultPaths.sort((left, right) => left.localeCompare(right));
+}
+async function filterRecentPaths(paths, newerThanMs, excludePaths) {
+    const filtered = [];
+    for (const path of paths) {
+        if (excludePaths?.has(path)) {
+            continue;
+        }
+        if (typeof newerThanMs === 'number') {
+            const metadata = await stat(path).catch(() => null);
+            if (!metadata || metadata.mtimeMs < newerThanMs) {
+                continue;
+            }
+        }
+        filtered.push(path);
+    }
+    return filtered;
+}
+export async function resolveAutoresearchDeepInterviewResult(repoRoot, options = {}) {
+    const slug = options.slug?.trim() ? slugifyMissionName(options.slug) : null;
+    if (slug) {
+        const resultPath = buildResultPath(repoRoot, slug);
+        if (existsSync(resultPath)) {
+            const metadata = await stat(resultPath).catch(() => null);
+            if (!metadata || options.newerThanMs == null || metadata.mtimeMs >= options.newerThanMs) {
+                return readPersistedResult(resultPath);
+            }
+        }
+        const draftArtifactPath = buildDraftArtifactPath(repoRoot, slug);
+        if (existsSync(draftArtifactPath)) {
+            const metadata = await stat(draftArtifactPath).catch(() => null);
+            if (!metadata || options.newerThanMs == null || metadata.mtimeMs >= options.newerThanMs) {
+                const draftContent = await readFile(draftArtifactPath, 'utf-8');
+                return parseDraftArtifactContent(draftContent, repoRoot, draftArtifactPath);
+            }
+        }
+        return null;
+    }
+    const resultPaths = await filterRecentPaths(await listAutoresearchDeepInterviewResultPaths(repoRoot), options.newerThanMs, options.excludeResultPaths);
+    const resultEntries = await Promise.all(resultPaths.map(async (path) => ({ path, metadata: await stat(path) })));
+    const newestResultPath = resultEntries.sort((left, right) => right.metadata.mtimeMs - left.metadata.mtimeMs)[0]?.path;
+    if (newestResultPath) {
+        return readPersistedResult(newestResultPath);
+    }
+    const draftPaths = await filterRecentPaths(await listMarkdownDraftPaths(repoRoot), options.newerThanMs);
+    const draftEntries = await Promise.all(draftPaths.map(async (path) => ({ path, metadata: await stat(path) })));
+    const newestDraftPath = draftEntries.sort((left, right) => right.metadata.mtimeMs - left.metadata.mtimeMs)[0]?.path;
+    if (!newestDraftPath) {
+        return null;
+    }
+    const draftContent = await readFile(newestDraftPath, 'utf-8');
+    return parseDraftArtifactContent(draftContent, repoRoot, newestDraftPath);
+}
+//# sourceMappingURL=autoresearch-intake.js.map

package/dist/cli/autoresearch-intake.js.map

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package/dist/cli/autoresearch.d.ts

@@ -1,4 +1,5 @@
-export declare const AUTORESEARCH_HELP = "omx autoresearch - Launch OMX autoresearch with thin-supervisor parity semantics\n\nUsage:\n  omx autoresearch                                                (guided setup + background launch)\n  omx autoresearch init [--topic T] [--evaluator CMD] [--keep-policy P] [--slug S]\n  omx autoresearch <mission-dir> [codex-args...]\n  omx autoresearch --resume <run-id> [codex-args...]\n\nArguments:\n  (no args)        Interactive guided setup: collects topic, evaluator, policy, and slug,\n                   generates a mission directory, then spawns autoresearch in a background tmux session.\n  init             Non-interactive mission scaffolding via flags (all four flags required).\n  <mission-dir>    Directory inside a git repository containing mission.md and sandbox.md\n  <run-id>         Existing autoresearch run id from .omx/logs/autoresearch/<run-id>/manifest.json\n\nBehavior:\n  - validates mission.md and sandbox.md\n  - requires sandbox.md YAML frontmatter with evaluator.command and evaluator.format=json\n  - fresh launch creates a run-tagged autoresearch/<slug>/<run-tag> lane\n  - supervisor records baseline, candidate, keep/discard/reset, and results artifacts under .omx/logs/autoresearch/\n  - --resume loads the authoritative per-run manifest and continues from the last kept commit\n";
+import { parseInitArgs } from './autoresearch-guided.js';
+export declare const AUTORESEARCH_HELP = "omx autoresearch - Launch OMX autoresearch with thin-supervisor parity semantics\n\nUsage:\n  omx autoresearch                                                (launch Codex CLI deep-interview intake, then background launch)\n  omx autoresearch [--topic T] [--evaluator CMD] [--keep-policy P] [--slug S]\n  omx autoresearch init [--topic T] [--evaluator CMD] [--keep-policy P] [--slug S]\n  omx autoresearch <mission-dir> [codex-args...]\n  omx autoresearch --resume <run-id> [codex-args...]\n\nArguments:\n  (no args)        Launch an interactive Codex session that activates deep-interview --autoresearch,\n                   writes .omx/specs artifacts, then launches only after explicit confirmation.\n  --topic/...      Seed the deep-interview intake with draft values; still requires refinement/confirmation before launch.\n  init             Bare init is an interactive deep-interview alias on TTYs; init with flags is the expert scaffold path.\n  <mission-dir>    Directory inside a git repository containing mission.md and sandbox.md\n  <run-id>         Existing autoresearch run id from .omx/logs/autoresearch/<run-id>/manifest.json\n\nBehavior:\n  - deep-interview intake writes canonical artifacts under .omx/specs before launch\n  - validates mission.md and sandbox.md\n  - requires sandbox.md YAML frontmatter with evaluator.command and evaluator.format=json\n  - fresh launch creates a run-tagged autoresearch/<slug>/<run-tag> lane\n  - supervisor records baseline, candidate, keep/discard/reset, and results artifacts under .omx/logs/autoresearch/\n  - --resume loads the authoritative per-run manifest and continues from the last kept commit\n";
 export declare function normalizeAutoresearchCodexArgs(codexArgs: readonly string[]): string[];
 export interface ParsedAutoresearchArgs {
     missionDir: string | null;
@@ -6,6 +7,7 @@ export interface ParsedAutoresearchArgs {
     codexArgs: string[];
     guided?: boolean;
     initArgs?: string[];
+    seedArgs?: ReturnType<typeof parseInitArgs>;
 }
 export declare function parseAutoresearchArgs(args: readonly string[]): ParsedAutoresearchArgs;
 export declare function autoresearchCommand(args: string[]): Promise<void>;

package/dist/cli/autoresearch.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"autoresearch.d.ts","sourceRoot":"","sources":["../../src/cli/autoresearch.ts"],"names":[],"mappings":"AAeA,OAAO,EAIL,aAAa,EAEd,MAAM,0BAA0B,CAAC;AAIlC,eAAO,MAAM,iBAAiB,+nDAwB7B,CAAC;AA8DF,wBAAgB,8BAA8B,CAAC,SAAS,EAAE,SAAS,MAAM,EAAE,GAAG,MAAM,EAAE,CA2BrF;AAsBD,MAAM,WAAW,sBAAsB;IACrC,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;IAC1B,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,QAAQ,CAAC,EAAE,UAAU,CAAC,OAAO,aAAa,CAAC,CAAC;CAC7C;AAUD,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,sBAAsB,CAmCrF;AAiDD,wBAAsB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA4DvE"}

package/dist/cli/autoresearch.js

@@ -4,24 +4,28 @@ import { ensureWorktree, planWorktreeTarget } from '../team/worktree.js';
 import { loadAutoresearchMissionContract } from '../autoresearch/contracts.js';
 import { countTrailingAutoresearchNoops, finalizeAutoresearchRunState, loadAutoresearchRunManifest, materializeAutoresearchMissionToWorktree, prepareAutoresearchRuntime, processAutoresearchCandidate, resumeAutoresearchRuntime, buildAutoresearchRunTag, } from '../autoresearch/runtime.js';
 import { assertModeStartAllowed } from '../modes/base.js';
-import { guidedAutoresearchSetup, initAutoresearchMission, parseInitArgs, spawnAutoresearchTmux } from "./autoresearch-guided.js";
-import { CODEX_BYPASS_FLAG, MADMAX_FLAG } from "./constants.js";
+import { buildAutoresearchDeepInterviewPrompt, initAutoresearchMission, materializeAutoresearchDeepInterviewResult, parseInitArgs, spawnAutoresearchTmux, } from './autoresearch-guided.js';
+import { resolveAutoresearchDeepInterviewResult } from './autoresearch-intake.js';
+import { CODEX_BYPASS_FLAG, MADMAX_FLAG } from './constants.js';
 export const AUTORESEARCH_HELP = `omx autoresearch - Launch OMX autoresearch with thin-supervisor parity semantics
 
 Usage:
-  omx autoresearch                                                (guided setup + background launch)
+  omx autoresearch                                                (launch Codex CLI deep-interview intake, then background launch)
+  omx autoresearch [--topic T] [--evaluator CMD] [--keep-policy P] [--slug S]
   omx autoresearch init [--topic T] [--evaluator CMD] [--keep-policy P] [--slug S]
   omx autoresearch <mission-dir> [codex-args...]
   omx autoresearch --resume <run-id> [codex-args...]
 
 Arguments:
-  (no args)        Interactive guided setup: collects topic, evaluator, policy, and slug,
-                   generates a mission directory, then spawns autoresearch in a background tmux session.
-  init             Non-interactive mission scaffolding via flags (all four flags required).
+  (no args)        Launch an interactive Codex session that activates deep-interview --autoresearch,
+                   writes .omx/specs artifacts, then launches only after explicit confirmation.
+  --topic/...      Seed the deep-interview intake with draft values; still requires refinement/confirmation before launch.
+  init             Bare init is an interactive deep-interview alias on TTYs; init with flags is the expert scaffold path.
   <mission-dir>    Directory inside a git repository containing mission.md and sandbox.md
   <run-id>         Existing autoresearch run id from .omx/logs/autoresearch/<run-id>/manifest.json
 
 Behavior:
+  - deep-interview intake writes canonical artifacts under .omx/specs before launch
   - validates mission.md and sandbox.md
   - requires sandbox.md YAML frontmatter with evaluator.command and evaluator.format=json
   - fresh launch creates a run-tagged autoresearch/<slug>/<run-tag> lane
@@ -30,6 +34,55 @@ Behavior:
 `;
 const AUTORESEARCH_APPEND_INSTRUCTIONS_ENV = 'OMX_AUTORESEARCH_APPEND_INSTRUCTIONS_FILE';
 const AUTORESEARCH_MAX_CONSECUTIVE_NOOPS = 3;
+function buildAutoresearchDeepInterviewAppendix() {
+    return [
+        '<autoresearch_deep_interview_mode>',
+        'You are in OMX autoresearch intake mode.',
+        'Run the deep-interview skill in autoresearch mode and clarify the research mission before launch.',
+        'Do not start tmux, do not launch `omx autoresearch`, and do not bypass the user confirmation boundary.',
+        'When the user confirms launch and the evaluator is concrete, persist canonical artifacts under `.omx/specs/` using the contracts in `src/cli/autoresearch-intake.ts`.',
+        '- Required outputs: `deep-interview-autoresearch-{slug}.md`, `autoresearch-{slug}/mission.md`, `autoresearch-{slug}/sandbox.md`, `autoresearch-{slug}/result.json`.',
+        '- If the evaluator is still a placeholder or the user wants to refine further, keep interviewing instead of finalizing launch-ready output.',
+        '</autoresearch_deep_interview_mode>',
+    ].join('\n');
+}
+async function writeAutoresearchDeepInterviewAppendixFile(repoRoot) {
+    const { mkdir, writeFile } = await import('node:fs/promises');
+    const { join } = await import('node:path');
+    const dir = join(repoRoot, '.omx', 'autoresearch');
+    await mkdir(dir, { recursive: true });
+    const path = join(dir, 'deep-interview-session-instructions.md');
+    await writeFile(path, `${buildAutoresearchDeepInterviewAppendix()}\n`, 'utf-8');
+    return path;
+}
+async function runGuidedAutoresearchDeepInterview(repoRoot, seedArgs) {
+    const previousInstructionsFile = process.env[AUTORESEARCH_APPEND_INSTRUCTIONS_ENV];
+    const appendixPath = await writeAutoresearchDeepInterviewAppendixFile(repoRoot);
+    const startedAtMs = Date.now();
+    process.env[AUTORESEARCH_APPEND_INSTRUCTIONS_ENV] = appendixPath;
+    try {
+        const { launchWithHud } = await import('./index.js');
+        await launchWithHud([buildAutoresearchDeepInterviewPrompt(seedArgs ?? {})]);
+    }
+    finally {
+        if (typeof previousInstructionsFile === 'string') {
+            process.env[AUTORESEARCH_APPEND_INSTRUCTIONS_ENV] = previousInstructionsFile;
+        }
+        else {
+            delete process.env[AUTORESEARCH_APPEND_INSTRUCTIONS_ENV];
+        }
+    }
+    const result = await resolveAutoresearchDeepInterviewResult(repoRoot, {
+        newerThanMs: startedAtMs,
+    });
+    if (!result) {
+        throw new Error('autoresearch deep-interview did not produce .omx/specs launch artifacts.');
+    }
+    if (!result.launchReady) {
+        throw new Error(`autoresearch deep-interview exited without a launch-ready result. ${result.blockedReasons.join(' ') || 'Refine the interview result and retry.'}`);
+    }
+    return materializeAutoresearchDeepInterviewResult(result);
+}
 export function normalizeAutoresearchCodexArgs(codexArgs) {
     const normalized = [];
     let hasBypass = false;
@@ -111,7 +164,8 @@ export function parseAutoresearchArgs(args) {
         return { missionDir: null, runId, codexArgs: values.slice(1) };
     }
     if (first.startsWith('-')) {
-        throw new Error(`mission-dir must be the first positional argument unless using --resume.\n${AUTORESEARCH_HELP}`);
+        const seedArgs = parseInitArgs(values);
+        return { missionDir: null, runId: null, codexArgs: [], guided: true, seedArgs };
     }
     return { missionDir: first, runId: null, codexArgs: values.slice(1) };
 }
@@ -123,7 +177,8 @@ async function runAutoresearchLoop(codexArgs, runtime, missionDir) {
         while (true) {
             runAutoresearchTurn(runtime.worktreePath, runtime.instructionsFile, codexArgs);
             const contract = await loadAutoresearchMissionContract(missionDir);
-            const manifest = await loadAutoresearchRunManifest(runtime.repoRoot, JSON.parse(execFileSync('cat', [runtime.manifestFile], { encoding: 'utf-8' })).run_id);
+            const { run_id: runId } = JSON.parse(readFileSync(runtime.manifestFile, 'utf-8'));
+            const manifest = await loadAutoresearchRunManifest(runtime.repoRoot, runId);
             const decision = await processAutoresearchCandidate(contract, manifest, runtime.repoRoot);
             if (decision === 'abort' || decision === 'error') {
                 return;
@@ -177,8 +232,7 @@ export async function autoresearchCommand(args) {
             });
         }
         else {
-            // Interactive guided setup
-            result = await guidedAutoresearchSetup(repoRoot);
+            result = await runGuidedAutoresearchDeepInterview(repoRoot, parsed.seedArgs);
         }
         spawnAutoresearchTmux(result.missionDir, result.slug);
         return;

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package/dist/cli/cleanup.d.ts

@@ -0,0 +1,52 @@
+export interface ProcessEntry {
+    pid: number;
+    ppid: number;
+    command: string;
+}
+export interface CleanupCandidate extends ProcessEntry {
+    reason: 'ppid=1' | 'outside-current-session';
+}
+export interface CleanupResult {
+    dryRun: boolean;
+    candidates: CleanupCandidate[];
+    terminatedCount: number;
+    forceKilledCount: number;
+    failedPids: number[];
+}
+export interface CleanupDependencies {
+    currentPid?: number;
+    listProcesses?: () => ProcessEntry[];
+    isPidAlive?: (pid: number) => boolean;
+    sendSignal?: (pid: number, signal: NodeJS.Signals) => void;
+    sleep?: (ms: number) => Promise<void>;
+    now?: () => number;
+    writeLine?: (line: string) => void;
+}
+interface TmpDirectoryEntry {
+    name: string;
+    isDirectory(): boolean;
+}
+export interface TmpCleanupDependencies {
+    tmpRoot?: string;
+    listTmpEntries?: (tmpRoot: string) => Promise<TmpDirectoryEntry[]>;
+    statPath?: (path: string) => Promise<{
+        mtimeMs: number;
+    }>;
+    removePath?: (path: string) => Promise<void>;
+    now?: () => number;
+    writeLine?: (line: string) => void;
+}
+export interface CleanupCommandDependencies {
+    cleanupProcesses?: (args: readonly string[]) => Promise<CleanupResult>;
+    cleanupTmpDirectories?: (args: readonly string[]) => Promise<number>;
+}
+export declare function isOmxMcpProcess(command: string): boolean;
+export declare function parsePsOutput(output: string): ProcessEntry[];
+export declare function listOmxProcesses(): ProcessEntry[];
+export declare function buildProtectedPidSet(processes: readonly ProcessEntry[], currentPid: number): Set<number>;
+export declare function findCleanupCandidates(processes: readonly ProcessEntry[], currentPid: number): CleanupCandidate[];
+export declare function cleanupOmxMcpProcesses(args: readonly string[], dependencies?: CleanupDependencies): Promise<CleanupResult>;
+export declare function cleanupStaleTmpDirectories(args: readonly string[], dependencies?: TmpCleanupDependencies): Promise<number>;
+export declare function cleanupCommand(args: string[], dependencies?: CleanupCommandDependencies): Promise<void>;
+export {};
+//# sourceMappingURL=cleanup.d.ts.map

package/dist/cli/cleanup.d.ts.map

@@ -0,0 +1 @@
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