obsidian-mcp-server 3.5.1 → 3.5.3

package/AGENTS.md

@@ -1,11 +1,11 @@
 # Agent Protocol
 
 **Server:** obsidian-mcp-server
-**Version:** 3.5.1
-**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.5`
-**Engines:** Bun ≥1.3.0, Node ≥24.0.0
+**Version:** 3.5.3
+**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.13.0`
+**Engines:** Bun ≥1.4.0, Node ≥24.0.0
 **MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
-**Zod:** ^4.5.4
+**Zod:** ^4.6.1
 
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
 
@@ -189,7 +189,7 @@ The framework also provides `ctx.state`. It isn't used by this server — Obsidi
 
 Handlers throw — the framework catches, classifies, and formats.
 
-**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive a typed `ctx.fail(reason, …)` keyed by the declared reason union. TypeScript catches `ctx.fail('typo')` at compile time, `data.reason` is auto-populated for observability, and the linter enforces conformance against the handler body. The `recovery` field is required descriptive metadata (≥ 5 words, lint-validated) — it's the single source of truth for the recovery hint that flows to the wire. Spread `ctx.recoveryFor('reason')` into `data` to opt the contract recovery onto the wire (the framework mirrors `data.recovery.hint` into `content[]` text). Override with explicit `{ recovery: { hint: '...' } }` when runtime context matters. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely and don't need declaring.
+**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive a typed `ctx.fail(reason, …)` keyed by the declared reason union. TypeScript catches `ctx.fail('typo')` at compile time, `data.reason` is auto-populated for observability, and the linter enforces conformance against the handler body. The `recovery` field is required descriptive metadata (≥ 5 words, lint-validated) — it's the single source of truth for the recovery hint that flows to the wire. Spread `ctx.recoveryFor('reason')` into `data` to opt the contract recovery onto the wire (the framework mirrors `data.recovery.hint` into `content[]` text). Override with explicit `{ recovery: { hint: '...' } }` when runtime context matters. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`, `RequestCancelled`) bubble freely and don't need declaring.
 
 ```ts
 errors: [
@@ -278,9 +278,9 @@ src/
 
 ## Skills
 
-Skills are modular instructions in `skills/` at the project root. Read them directly when a task matches — e.g., `skills/add-tool/SKILL.md` when adding a tool.
+Skills are modular instructions in `framework-skills/` at the project root. Read them directly when a task matches — e.g., `framework-skills/add-tool/SKILL.md` when adding a tool. `bun run list-skills` prints the full registry. The directory is deliberately not `skills/`: Claude Code and Codex auto-load a plugin's root `skills/`, so a server that ships `.claude-plugin/` or `.codex-plugin/` would hand these development skills to every agent that installs it. Keep `skills/` free for skills meant for those agents.
 
-**Agent skill directory:** Copy skills into the directory your agent discovers (Claude Code: `.claude/skills/`, others: equivalent). This makes skills available as context without needing to reference `skills/` paths manually. After framework updates, run the `maintenance` skill — it re-syncs the agent directory automatically (Phase B).
+**Agent skill directory:** Copy skills into the directory your agent discovers (Claude Code: `.claude/skills/`, others: equivalent). Skills then load as context without referencing `framework-skills/` paths. After framework updates, run the `maintenance` skill — Phase B re-syncs the agent directory.
 
 Available skills:
 
@@ -299,8 +299,9 @@ Available skills:
 | `tool-defs-analysis` | Read-only audit of MCP definition language across the surface — voice, leaks, defaults, recovery hints, output descriptions |
 | `code-simplifier` | Post-session cleanup against `git diff` — modernize syntax, consolidate duplication, align with the codebase |
 | `polish-docs-meta` | Finalize docs, README, metadata, and agent protocol for shipping |
-| `git-wrapup` | Land working-tree changes as a versioned commit + annotated tag — version bump, changelog, verify, tag. Local only. |
-| `release-and-publish` | Ship a release end-to-end across npm, MCP Registry, GitHub Releases (`.mcpb`), and GHCR |
+| `git-wrapup` | Land working-tree changes as a commit stack — version bump, changelog, verify, commit by concern, release commit on top. No tag, no push to main; opens the release PR when the project declares release PR mode |
+| `release-pr-review` | Review pass on an open release PR — simplifier + correctness review, fixup commits autosquashed into the stack, PR body kept in sync. Release PR mode only |
+| `release-and-publish` | Fast-forward merge (release PR mode) + tag + push + npm + MCP Registry + GH Release + Docker. Picks up from `git-wrapup` |
 | `maintenance` | Investigate changelogs, adopt upstream changes, sync skills to agent dirs |
 | `orchestrations` | Chain task skills into a gated multi-phase pipeline — build-out, QA-fix, update-ship — when you can spawn sub-agents |
 | `report-issue-framework` | File a bug or feature request against `@cyanheads/mcp-ts-core` via `gh` CLI |
@@ -309,7 +310,7 @@ Available skills:
 | `api-auth` | Auth modes, scopes, JWT/OAuth |
 | `api-canvas` | DataCanvas: register tabular data, run SQL, export, plus the `spillover()` helper for big result sets — Tier 3 opt-in |
 | `api-config` | AppConfig, parseConfig, env vars |
-| `api-context` | Context interface, logger, state, progress |
+| `api-context` | Context interface, RequestContext, logger, state, multi-round-trip input |
 | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
 | `api-linter` | Definition linter rule catalog — invoked by `bun run lint:mcp` and `devcheck` |
 | `api-mirror` | MirrorService: persistent self-refreshing local mirror (embedded SQLite + FTS5) of a bulk upstream dataset — Tier 3 opt-in |
@@ -319,7 +320,7 @@ Available skills:
 | `api-utils` | Formatting, parsing, security, pagination, scheduling, telemetry helpers |
 | `api-workers` | Cloudflare Workers runtime |
 
-**Chaining skills into pipelines.** When the user wants a multi-phase effort — build this server out, QA-and-fix the surface, update-and-ship — *and you can spawn sub-agents*, `skills/orchestrations/SKILL.md` sequences the task skills above into a gated pipeline with verification at each step. Read it to drive the run. Optional: skip it if you can't orchestrate sub-agents, and ignore it entirely if you were *spawned* as one — you've already been scoped to a single phase.
+**Chaining skills into pipelines.** When the user wants a multi-phase effort — build this server out, QA-and-fix the surface, update-and-ship — *and you can spawn sub-agents*, `framework-skills/orchestrations/SKILL.md` sequences the task skills above into a gated pipeline with verification at each step. Read it to drive the run. Optional: skip it if you can't orchestrate sub-agents, and ignore it entirely if you were *spawned* as one — you've already been scoped to a single phase.
 
 When you complete a skill's checklist, check the boxes and add a completion timestamp at the end (e.g., `Completed: 2026-03-11`).
 
@@ -335,13 +336,14 @@ When you complete a skill's checklist, check the boxes and add a completion time
 | `bun run rebuild` | Clean + build |
 | `bun run clean` | Remove build artifacts |
 | `bun run devcheck` | Lint + format + typecheck + security + changelog sync |
-| `bun run audit:refresh` | Delete `bun.lock`, reinstall, and re-run `bun audit`. Use when `devcheck` flags a transitive advisory — Bun's `update` is sticky on transitive resolutions, so the advisory may be a stale-lockfile false positive. If it survives the refresh, it's real. |
+| `bun run audit:fix` | `bun audit fix` — upgrade vulnerable packages to the lowest safe version within existing ranges (`--dry-run` previews, `--latest` rewrites ranges). First response when `devcheck` flags a transitive advisory; then `bun update <name>`, then `bun dedupe` |
+| `bun run audit:refresh` | Delete `bun.lock` and reinstall. Last resort after `audit:fix`, `bun update <name>`, and `bun dedupe` — re-resolves every ranged dep (the framework pin included) and rewrites the lockfile as `lockfileVersion: 2` |
 | `bun run tree` | Generate `docs/tree.md` |
 | `bun run list-skills` | Print project skill index (name, version, description) |
 | `bun run format` | Auto-fix formatting (safe fixes only) |
 | `bun run format:unsafe` | Also apply Biome's unsafe autofixes — review the diff; they can change behavior |
 | `bun run lint:mcp` | Validate MCP definitions against the linter rules |
-| `bun run lint:packaging` | Validate env var alignment between `manifest.json` and `server.json` |
+| `bun run lint:packaging` | Packaging surface checks — `server.json`/`manifest.json` env-var parity, `user_config` wiring, plugin manifest identity and env contract (run by devcheck) |
 | `bun run bundle` | Build, pack, and clean a `.mcpb` for one-click Claude Desktop install |
 | `bun run test` | Run tests (Vitest — use `bun run test`, not `bun test`) |
 | `bun run start:stdio` | Production mode (stdio) — requires `bun run build` first |
@@ -353,9 +355,9 @@ When you complete a skill's checklist, check the boxes and add a completion time
 
 ## Bundling
 
-`bun run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. The pack step is followed by `scripts/clean-mcpb.ts`, which prunes dev dependencies (`mcpb clean`) and strips two classes of `node_modules/**` content that root-anchored `.mcpbignore` patterns cannot reach: dependency-shipped agent docs (`skills/`, `.claude/`, `.agents/`, `SKILL.md`) and platform-specific native bindings, which would otherwise lock the bundle to the platform it was packed on. MCPB is stdio-only — HTTP deployments are unaffected. Delete `manifest.json` and `.mcpbignore` if not shipping MCPB bundles; `lint:packaging` skips cleanly.
+`bun run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. The pack step is followed by `scripts/clean-mcpb.ts`, which prunes dev dependencies (`mcpb clean`) and strips two classes of `node_modules/**` content that root-anchored `.mcpbignore` patterns cannot reach: dependency-shipped agent docs (`framework-skills/`, `skills/`, `.claude/`, `.agents/`, `SKILL.md`) and platform-specific native bindings, which would otherwise lock the bundle to the platform it was packed on. MCPB is stdio-only — HTTP deployments are unaffected. Delete `manifest.json` and `.mcpbignore` if not shipping MCPB bundles; `lint:packaging` skips cleanly.
 
-**Adding an env var requires both files:** `server.json` (`environmentVariables[]`) and `manifest.json` (`mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match.
+**Adding an env var requires both files:** `server.json` (registry discovery, `environmentVariables[]`) and `manifest.json` (bundle install UX, `mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match, that every `user_config` option is wired into `mcp_config.env` as `"X": "${user_config.X}"` (the host substitutes nothing else — `"${X}"` reaches the server as that literal string), and that an optional string option carries `"default": ""`. A user-supplied variable also goes into the plugin manifests: `.claude-plugin/plugin.json` `userConfig` + `${user_config.<option>}` in `env`, and `.codex-plugin/mcp.json` `env_vars`.
 
 ---
 
@@ -380,7 +382,7 @@ security: false                            # optional — true ONLY for a source
 
 `agent-notes` is an optional free-form field for maintenance agents processing the release downstream. Content here won't appear in the rendered CHANGELOG — it's consumed by agents running the `maintenance` skill. Use it for adoption instructions that don't fit the human-facing sections: new files to create, fields to populate, one-time migration steps. Omit entirely when there's nothing to say.
 
-**Section order** (Keep a Changelog): Added, Changed, Deprecated, Removed, Fixed, Security. Include only sections with entries — don't ship empty headers.
+**Section order:** the Keep a Changelog sequence — Added, Changed, Deprecated, Removed, Fixed, Security — then `Dependencies` last. Include only sections with entries — don't ship empty headers.
 
 **Tag annotations** render as GitHub Release bodies via `--notes-from-tag`. They must be structured markdown — never a flat comma-separated string. Subject omits the version number (GitHub prepends it). See `changelog/template.md` for the full format reference.
 
@@ -412,7 +414,7 @@ import { getMyService } from '@/services/my-domain/my-service.js';
 - [ ] If wrapping external API: tests include at least one sparse payload case with omitted upstream fields
 - [ ] Registered in `createApp()` arrays (directly or via barrel exports). Conditional registration (e.g. `commandToolDefinitions` behind `OBSIDIAN_ENABLE_COMMANDS`) happens in `src/index.ts`, not in the barrel
 - [ ] Tests use `createMockContext()` from `@cyanheads/mcp-ts-core/testing`
-- [ ] `.codex-plugin/plugin.json` populated — `name`, `version`, `description`, `repository`, `license` from `package.json`; `interface.displayName` = package name; `interface.shortDescription` from `package.json` description
-- [ ] `.codex-plugin/mcp.json` updated — server name key matches `package.json` name; env vars added for any required API keys
-- [ ] `.claude-plugin/plugin.json` populated — `name`, `version`, `description`, `repository`, `license` from `package.json`; inline `mcpServers` entry with server name key, env vars for any required API keys
+- [ ] `.codex-plugin/plugin.json` populated — `name`, `version`, `description`, `repository`, `license` from `package.json`; `interface.displayName` = the unscoped repo name (never the npm scope — `lint:packaging` enforces this); `interface.shortDescription` from `package.json` description
+- [ ] `.codex-plugin/mcp.json` updated — server name key is the unscoped repo name; every user-supplied variable (API key, instance URL) is listed in `env_vars` so Codex forwards it from the user's environment. Never write `"KEY": ""` into `env` — an empty value replaces the user's exported key and is read as unset
+- [ ] `.claude-plugin/plugin.json` populated — `name`, `version`, `description`, `author`, `repository`, `license`, `keywords` from `package.json`; inline `mcpServers` entry keyed by the unscoped repo name. Every user-supplied variable is declared under `userConfig` (`type`, `title`, `description`; `sensitive: true` for keys and tokens; `required: true` or `default: ""`) and referenced from `env` as `"KEY": "${user_config.<option>}"` — mirror the `user_config` block in `manifest.json`. Never write `"KEY": ""` into `env`
 - [ ] `bun run devcheck` passes

package/CLAUDE.md

@@ -1,11 +1,11 @@
 # Agent Protocol
 
 **Server:** obsidian-mcp-server
-**Version:** 3.5.1
-**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.5`
-**Engines:** Bun ≥1.3.0, Node ≥24.0.0
+**Version:** 3.5.3
+**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.13.0`
+**Engines:** Bun ≥1.4.0, Node ≥24.0.0
 **MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
-**Zod:** ^4.5.4
+**Zod:** ^4.6.1
 
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
 
@@ -189,7 +189,7 @@ The framework also provides `ctx.state`. It isn't used by this server — Obsidi
 
 Handlers throw — the framework catches, classifies, and formats.
 
-**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive a typed `ctx.fail(reason, …)` keyed by the declared reason union. TypeScript catches `ctx.fail('typo')` at compile time, `data.reason` is auto-populated for observability, and the linter enforces conformance against the handler body. The `recovery` field is required descriptive metadata (≥ 5 words, lint-validated) — it's the single source of truth for the recovery hint that flows to the wire. Spread `ctx.recoveryFor('reason')` into `data` to opt the contract recovery onto the wire (the framework mirrors `data.recovery.hint` into `content[]` text). Override with explicit `{ recovery: { hint: '...' } }` when runtime context matters. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely and don't need declaring.
+**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive a typed `ctx.fail(reason, …)` keyed by the declared reason union. TypeScript catches `ctx.fail('typo')` at compile time, `data.reason` is auto-populated for observability, and the linter enforces conformance against the handler body. The `recovery` field is required descriptive metadata (≥ 5 words, lint-validated) — it's the single source of truth for the recovery hint that flows to the wire. Spread `ctx.recoveryFor('reason')` into `data` to opt the contract recovery onto the wire (the framework mirrors `data.recovery.hint` into `content[]` text). Override with explicit `{ recovery: { hint: '...' } }` when runtime context matters. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`, `RequestCancelled`) bubble freely and don't need declaring.
 
 ```ts
 errors: [
@@ -278,9 +278,9 @@ src/
 
 ## Skills
 
-Skills are modular instructions in `skills/` at the project root. Read them directly when a task matches — e.g., `skills/add-tool/SKILL.md` when adding a tool.
+Skills are modular instructions in `framework-skills/` at the project root. Read them directly when a task matches — e.g., `framework-skills/add-tool/SKILL.md` when adding a tool. `bun run list-skills` prints the full registry. The directory is deliberately not `skills/`: Claude Code and Codex auto-load a plugin's root `skills/`, so a server that ships `.claude-plugin/` or `.codex-plugin/` would hand these development skills to every agent that installs it. Keep `skills/` free for skills meant for those agents.
 
-**Agent skill directory:** Copy skills into the directory your agent discovers (Claude Code: `.claude/skills/`, others: equivalent). This makes skills available as context without needing to reference `skills/` paths manually. After framework updates, run the `maintenance` skill — it re-syncs the agent directory automatically (Phase B).
+**Agent skill directory:** Copy skills into the directory your agent discovers (Claude Code: `.claude/skills/`, others: equivalent). Skills then load as context without referencing `framework-skills/` paths. After framework updates, run the `maintenance` skill — Phase B re-syncs the agent directory.
 
 Available skills:
 
@@ -299,8 +299,9 @@ Available skills:
 | `tool-defs-analysis` | Read-only audit of MCP definition language across the surface — voice, leaks, defaults, recovery hints, output descriptions |
 | `code-simplifier` | Post-session cleanup against `git diff` — modernize syntax, consolidate duplication, align with the codebase |
 | `polish-docs-meta` | Finalize docs, README, metadata, and agent protocol for shipping |
-| `git-wrapup` | Land working-tree changes as a versioned commit + annotated tag — version bump, changelog, verify, tag. Local only. |
-| `release-and-publish` | Ship a release end-to-end across npm, MCP Registry, GitHub Releases (`.mcpb`), and GHCR |
+| `git-wrapup` | Land working-tree changes as a commit stack — version bump, changelog, verify, commit by concern, release commit on top. No tag, no push to main; opens the release PR when the project declares release PR mode |
+| `release-pr-review` | Review pass on an open release PR — simplifier + correctness review, fixup commits autosquashed into the stack, PR body kept in sync. Release PR mode only |
+| `release-and-publish` | Fast-forward merge (release PR mode) + tag + push + npm + MCP Registry + GH Release + Docker. Picks up from `git-wrapup` |
 | `maintenance` | Investigate changelogs, adopt upstream changes, sync skills to agent dirs |
 | `orchestrations` | Chain task skills into a gated multi-phase pipeline — build-out, QA-fix, update-ship — when you can spawn sub-agents |
 | `report-issue-framework` | File a bug or feature request against `@cyanheads/mcp-ts-core` via `gh` CLI |
@@ -309,7 +310,7 @@ Available skills:
 | `api-auth` | Auth modes, scopes, JWT/OAuth |
 | `api-canvas` | DataCanvas: register tabular data, run SQL, export, plus the `spillover()` helper for big result sets — Tier 3 opt-in |
 | `api-config` | AppConfig, parseConfig, env vars |
-| `api-context` | Context interface, logger, state, progress |
+| `api-context` | Context interface, RequestContext, logger, state, multi-round-trip input |
 | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
 | `api-linter` | Definition linter rule catalog — invoked by `bun run lint:mcp` and `devcheck` |
 | `api-mirror` | MirrorService: persistent self-refreshing local mirror (embedded SQLite + FTS5) of a bulk upstream dataset — Tier 3 opt-in |
@@ -319,7 +320,7 @@ Available skills:
 | `api-utils` | Formatting, parsing, security, pagination, scheduling, telemetry helpers |
 | `api-workers` | Cloudflare Workers runtime |
 
-**Chaining skills into pipelines.** When the user wants a multi-phase effort — build this server out, QA-and-fix the surface, update-and-ship — *and you can spawn sub-agents*, `skills/orchestrations/SKILL.md` sequences the task skills above into a gated pipeline with verification at each step. Read it to drive the run. Optional: skip it if you can't orchestrate sub-agents, and ignore it entirely if you were *spawned* as one — you've already been scoped to a single phase.
+**Chaining skills into pipelines.** When the user wants a multi-phase effort — build this server out, QA-and-fix the surface, update-and-ship — *and you can spawn sub-agents*, `framework-skills/orchestrations/SKILL.md` sequences the task skills above into a gated pipeline with verification at each step. Read it to drive the run. Optional: skip it if you can't orchestrate sub-agents, and ignore it entirely if you were *spawned* as one — you've already been scoped to a single phase.
 
 When you complete a skill's checklist, check the boxes and add a completion timestamp at the end (e.g., `Completed: 2026-03-11`).
 
@@ -335,13 +336,14 @@ When you complete a skill's checklist, check the boxes and add a completion time
 | `bun run rebuild` | Clean + build |
 | `bun run clean` | Remove build artifacts |
 | `bun run devcheck` | Lint + format + typecheck + security + changelog sync |
-| `bun run audit:refresh` | Delete `bun.lock`, reinstall, and re-run `bun audit`. Use when `devcheck` flags a transitive advisory — Bun's `update` is sticky on transitive resolutions, so the advisory may be a stale-lockfile false positive. If it survives the refresh, it's real. |
+| `bun run audit:fix` | `bun audit fix` — upgrade vulnerable packages to the lowest safe version within existing ranges (`--dry-run` previews, `--latest` rewrites ranges). First response when `devcheck` flags a transitive advisory; then `bun update <name>`, then `bun dedupe` |
+| `bun run audit:refresh` | Delete `bun.lock` and reinstall. Last resort after `audit:fix`, `bun update <name>`, and `bun dedupe` — re-resolves every ranged dep (the framework pin included) and rewrites the lockfile as `lockfileVersion: 2` |
 | `bun run tree` | Generate `docs/tree.md` |
 | `bun run list-skills` | Print project skill index (name, version, description) |
 | `bun run format` | Auto-fix formatting (safe fixes only) |
 | `bun run format:unsafe` | Also apply Biome's unsafe autofixes — review the diff; they can change behavior |
 | `bun run lint:mcp` | Validate MCP definitions against the linter rules |
-| `bun run lint:packaging` | Validate env var alignment between `manifest.json` and `server.json` |
+| `bun run lint:packaging` | Packaging surface checks — `server.json`/`manifest.json` env-var parity, `user_config` wiring, plugin manifest identity and env contract (run by devcheck) |
 | `bun run bundle` | Build, pack, and clean a `.mcpb` for one-click Claude Desktop install |
 | `bun run test` | Run tests (Vitest — use `bun run test`, not `bun test`) |
 | `bun run start:stdio` | Production mode (stdio) — requires `bun run build` first |
@@ -353,9 +355,9 @@ When you complete a skill's checklist, check the boxes and add a completion time
 
 ## Bundling
 
-`bun run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. The pack step is followed by `scripts/clean-mcpb.ts`, which prunes dev dependencies (`mcpb clean`) and strips two classes of `node_modules/**` content that root-anchored `.mcpbignore` patterns cannot reach: dependency-shipped agent docs (`skills/`, `.claude/`, `.agents/`, `SKILL.md`) and platform-specific native bindings, which would otherwise lock the bundle to the platform it was packed on. MCPB is stdio-only — HTTP deployments are unaffected. Delete `manifest.json` and `.mcpbignore` if not shipping MCPB bundles; `lint:packaging` skips cleanly.
+`bun run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. The pack step is followed by `scripts/clean-mcpb.ts`, which prunes dev dependencies (`mcpb clean`) and strips two classes of `node_modules/**` content that root-anchored `.mcpbignore` patterns cannot reach: dependency-shipped agent docs (`framework-skills/`, `skills/`, `.claude/`, `.agents/`, `SKILL.md`) and platform-specific native bindings, which would otherwise lock the bundle to the platform it was packed on. MCPB is stdio-only — HTTP deployments are unaffected. Delete `manifest.json` and `.mcpbignore` if not shipping MCPB bundles; `lint:packaging` skips cleanly.
 
-**Adding an env var requires both files:** `server.json` (`environmentVariables[]`) and `manifest.json` (`mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match.
+**Adding an env var requires both files:** `server.json` (registry discovery, `environmentVariables[]`) and `manifest.json` (bundle install UX, `mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match, that every `user_config` option is wired into `mcp_config.env` as `"X": "${user_config.X}"` (the host substitutes nothing else — `"${X}"` reaches the server as that literal string), and that an optional string option carries `"default": ""`. A user-supplied variable also goes into the plugin manifests: `.claude-plugin/plugin.json` `userConfig` + `${user_config.<option>}` in `env`, and `.codex-plugin/mcp.json` `env_vars`.
 
 ---
 
@@ -380,7 +382,7 @@ security: false                            # optional — true ONLY for a source
 
 `agent-notes` is an optional free-form field for maintenance agents processing the release downstream. Content here won't appear in the rendered CHANGELOG — it's consumed by agents running the `maintenance` skill. Use it for adoption instructions that don't fit the human-facing sections: new files to create, fields to populate, one-time migration steps. Omit entirely when there's nothing to say.
 
-**Section order** (Keep a Changelog): Added, Changed, Deprecated, Removed, Fixed, Security. Include only sections with entries — don't ship empty headers.
+**Section order:** the Keep a Changelog sequence — Added, Changed, Deprecated, Removed, Fixed, Security — then `Dependencies` last. Include only sections with entries — don't ship empty headers.
 
 **Tag annotations** render as GitHub Release bodies via `--notes-from-tag`. They must be structured markdown — never a flat comma-separated string. Subject omits the version number (GitHub prepends it). See `changelog/template.md` for the full format reference.
 
@@ -412,7 +414,7 @@ import { getMyService } from '@/services/my-domain/my-service.js';
 - [ ] If wrapping external API: tests include at least one sparse payload case with omitted upstream fields
 - [ ] Registered in `createApp()` arrays (directly or via barrel exports). Conditional registration (e.g. `commandToolDefinitions` behind `OBSIDIAN_ENABLE_COMMANDS`) happens in `src/index.ts`, not in the barrel
 - [ ] Tests use `createMockContext()` from `@cyanheads/mcp-ts-core/testing`
-- [ ] `.codex-plugin/plugin.json` populated — `name`, `version`, `description`, `repository`, `license` from `package.json`; `interface.displayName` = package name; `interface.shortDescription` from `package.json` description
-- [ ] `.codex-plugin/mcp.json` updated — server name key matches `package.json` name; env vars added for any required API keys
-- [ ] `.claude-plugin/plugin.json` populated — `name`, `version`, `description`, `repository`, `license` from `package.json`; inline `mcpServers` entry with server name key, env vars for any required API keys
+- [ ] `.codex-plugin/plugin.json` populated — `name`, `version`, `description`, `repository`, `license` from `package.json`; `interface.displayName` = the unscoped repo name (never the npm scope — `lint:packaging` enforces this); `interface.shortDescription` from `package.json` description
+- [ ] `.codex-plugin/mcp.json` updated — server name key is the unscoped repo name; every user-supplied variable (API key, instance URL) is listed in `env_vars` so Codex forwards it from the user's environment. Never write `"KEY": ""` into `env` — an empty value replaces the user's exported key and is read as unset
+- [ ] `.claude-plugin/plugin.json` populated — `name`, `version`, `description`, `author`, `repository`, `license`, `keywords` from `package.json`; inline `mcpServers` entry keyed by the unscoped repo name. Every user-supplied variable is declared under `userConfig` (`type`, `title`, `description`; `sensitive: true` for keys and tokens; `required: true` or `default: ""`) and referenced from `env` as `"KEY": "${user_config.<option>}"` — mirror the `user_config` block in `manifest.json`. Never write `"KEY": ""` into `env`
 - [ ] `bun run devcheck` passes

package/README.md

@@ -7,7 +7,7 @@
 
 <div align="center">
 
-[![Version](https://img.shields.io/badge/Version-3.5.1-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/obsidian-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^2.0.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/obsidian-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/obsidian-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0.2-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
+[![Version](https://img.shields.io/badge/Version-3.5.3-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/obsidian-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^2.0.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/obsidian-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/obsidian-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0.2-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.4.0%2B-blueviolet.svg?style=flat-square)](https://bun.sh/)
 
 </div>
 
@@ -49,7 +49,7 @@ Read a note in one of four projections, addressed by vault path, the active file
 - `format: "content"` — raw markdown body
 - `format: "full"` — content, frontmatter, tags, and file metadata; pass `includeLinks: true` to also parse outgoing wiki and markdown link references from the body (vault-internal only — external URLs are filtered)
 - `format: "document-map"` — catalog of headings, block references, and frontmatter fields
-- `format: "section"` — single heading/block/frontmatter section value (requires `section`); heading sections include the full subtree under that heading
+- `format: "section"` — single heading/block/frontmatter section value (requires `section`); heading sections include the full subtree under that heading. The response echoes the locator the read resolved to in `sectionTarget` as a full `Parent::Child` path, and when a bare leaf name matches several headings it lists every colliding path in `candidates` — the read still returns the first match
 
 Pair the document-map projection with `obsidian_patch_note` to discover edit targets before patching.
 
@@ -136,7 +136,9 @@ Add, remove, or list tags on a note. Operates on one of two representations, def
 - `location: 'inline'` — only inline `#tag` syntax in the body; `add` appends `#tag` at end-of-file
 - `location: 'both'` — opt-in reconciliation across both representations
 
-`add` ensures the tag is present in the requested location(s); `remove` strips it; `list` ignores the input `tags` array. Inline `#tag` occurrences inside fenced code blocks are intentionally left alone.
+`add` ensures the tag is present in the requested location(s); `remove` strips it; `list` ignores the input `tags` array.
+
+Inline `#tag` detection skips code spans (fenced and inline), link spans (`[[...]]`, `[text](...)`, `[text][ref]`) — so a heading anchor, block anchor, or wikilink alias is never read as a tag or rewritten by a removal — and a hash escaped as `\#`. A `#` inside an HTML comment or a math span is still counted. `list` and `remove` run the same detection, so what `list` reports is what `remove` can reach.
 
 Inline mode reads and writes the note body only — a `#` inside a YAML scalar is frontmatter, so it is neither listed as an inline tag nor rewritten by a removal. Removing an inline tag takes exactly one adjacent horizontal space with it — the one before the tag, or the one after when no space precedes it; every other byte survives, including nested list indentation, four-space indented code blocks, trailing two-space hard line breaks, and table cell padding.
 
@@ -210,7 +212,7 @@ Obsidian-specific:
 
 - Wraps the [Obsidian Local REST API](https://github.com/coddingtonbear/obsidian-local-rest-api) plugin — typed client, deterministic error mapping
 - Section-aware editing across headings, block references, and frontmatter fields via `PATCH`-with-target operations
-- Tag reconciliation across both representations: frontmatter `tags:` array and inline `#tag` syntax (skipping fenced code blocks)
+- Tag reconciliation across both representations: frontmatter `tags:` array and inline `#tag` syntax (skipping code spans, link spans, and hashes escaped as `\#`)
 - Search across up to three modes: text, JSONLogic, and (when the plugin is reachable) BM25-ranked Omnisearch — cursor-paginated per the MCP 2025-11-25 spec, with per-file match clipping in text mode
 - Required human-in-the-loop confirmation for destructive deletes — a multi-round-trip `input_required` round served on both protocol revisions, with no unconfirmed path through the tool
 - Folder-scoped read/write permissions via `OBSIDIAN_READ_PATHS` / `OBSIDIAN_WRITE_PATHS` and a global `OBSIDIAN_READ_ONLY` kill switch — denies are typed `path_forbidden` with the active scope echoed back in the error data
@@ -266,9 +268,9 @@ MCP_TRANSPORT_TYPE=http OBSIDIAN_API_KEY=... bun run start:http
 
 ### Prerequisites
 
-- [Bun v1.3.0](https://bun.sh/) or higher (or Node.js v24+).
+- [Bun v1.4.0](https://bun.sh/) or higher (or Node.js v24+).
 - The [Obsidian Local REST API](https://github.com/coddingtonbear/obsidian-local-rest-api) plugin, **v4.0.0 through v5.x**, installed and enabled in your vault. Generate an API key in **Settings → Community Plugins → Local REST API** and copy it into `OBSIDIAN_API_KEY`. Plugin v6.0 removes the markdown-patch 1.x wire format this server pins for section-targeted writes and the document map.
-- Periodic-note targets (`target: { "type": "periodic" }`) additionally need plugin **v5.0.1 or earlier** — v5.0.2 removed the built-in `/periodic/` routes. Every other target type is unaffected.
+- Periodic-note targets (`target: { "type": "periodic" }`) work across that whole range: natively on plugin **v5.0.1 and earlier**, and on **v5.0.2 and later** — which moved the `/periodic/` routes out of the plugin — once the companion [periodic-notes API extension](https://github.com/coddingtonbear/obsidian-local-rest-api-periodic-notes) is installed. Without that extension on v5.0.2+, periodic targets fail with a `periodic_unsupported` error naming it; `obsidian://status` lists the registered extensions if you want to check first. Every other target type is unaffected.
 - An MCP client that can answer an input request (elicitation). `obsidian_delete_note` always asks for confirmation before deleting, so a client without that support can read and write notes but cannot delete one.
 - This server defaults to `http://127.0.0.1:27123` for simplicity. Enable **"Non-encrypted (HTTP) Server"** in the plugin settings to use it. To use the always-on HTTPS port instead, set `OBSIDIAN_BASE_URL=https://127.0.0.1:27124`; the plugin's self-signed cert is handled by `OBSIDIAN_VERIFY_SSL=false` (the default).
 
@@ -389,7 +391,7 @@ See [`CLAUDE.md`](./CLAUDE.md) for development guidelines and architectural rule
 
 Bugs, feature requests, and documentation gaps belong in an issue — see [CONTRIBUTING.md](.github/CONTRIBUTING.md) for what makes one actionable, and [CODE_OF_CONDUCT.md](.github/CODE_OF_CONDUCT.md) for how we work together. Security reports go through [SECURITY.md](.github/SECURITY.md), never a public issue.
 
-Pull requests are welcome for small, self-contained fixes. Run checks and tests before submitting:
+Run checks and tests before submitting:
 
 ```sh
 bun run devcheck

package/changelog/3.5.x/3.5.2.md

@@ -0,0 +1,27 @@
+---
+summary: "Frontmatter boundary, inline tag detection, and section reads now share one consistent boundary and resolution logic; list_notes reports directory_missing/path_is_file instead of a generic note_missing; periodic-note targets get a periodic_unsupported error naming the missing plugin extension instead of a bare 404."
+breaking: false
+security: false
+---
+
+# 3.5.2 — 2026-09-09
+
+## Changed
+
+- **`obsidian_get_note` section reads echo the resolved heading path** — a bare leaf target reports back the full `Parent::Child` path it matched in `sectionTarget`, and every colliding heading in `candidates` when more than one shares that leaf; the read still returns the first match ([#107](https://github.com/cyanheads/obsidian-mcp-server/issues/107)).
+- **`obsidian_manage_tags` inline `#tag` detection skips link spans and escaped hashes** — `[[wikilink#Heading]]`, `[text](url#frag)`, and `[text][ref]` are no longer read or rewritten as tags, and a `\#` is recognized as an escaped literal hash; `list` and `remove` share the same detection so they agree on what a tag is ([#119](https://github.com/cyanheads/obsidian-mcp-server/issues/119)).
+- **`obsidian_list_notes` reports `directory_missing` and `path_is_file` in place of `note_missing`** — a folder that doesn't exist or holds no files gets `directory_missing`; a `path` that names a file gets `path_is_file` ([#105](https://github.com/cyanheads/obsidian-mcp-server/issues/105)).
+
+## Fixed
+
+- **The frontmatter fence regex now agrees with `splice()` on an empty properties block** — `section-extractor`'s line-scan boundary previously used a different rule than `frontmatter-ops`'s splice, so a note with an empty `---\n---` block or a fence carrying trailing whitespace could hide body content from section reads; both now resolve the boundary through the same `splice()` call ([#118](https://github.com/cyanheads/obsidian-mcp-server/issues/118)).
+- **Periodic-note targets get a typed `periodic_unsupported` error on Local REST API v5.0.2+ without the companion extension** — that plugin version removed the built-in `/periodic/` routes, and every periodic-target tool previously surfaced the resulting 404 as `periodic_not_found`, indistinguishable from "no note for that period." A memoized capability probe against `GET /`'s `apiExtensions` now tells the two apart and names `local-rest-api-periodic-notes` in the recovery hint ([#103](https://github.com/cyanheads/obsidian-mcp-server/issues/103)).
+
+## Dependencies
+
+- `@cyanheads/mcp-ts-core` ^0.12.5 → ^0.12.8
+- `undici` ^8.10.1 → ^8.10.2
+- `@biomejs/biome` ^2.5.11 → ^2.5.12 (dev)
+- `@types/node` ^26.4.0 → ^26.4.1 (dev)
+- `tsc-alias` ^1.9.3 → ^1.9.4 (dev)
+- `vitest` ^4.1.11 → ^5.0.0 (dev)

package/changelog/3.5.x/3.5.3.md

@@ -0,0 +1,26 @@
+---
+summary: "Bun engines floor rises to >=1.4.0 for mcp-ts-core 0.13.0; the development skill tree moves to framework-skills/ so installing the plugin no longer loads it into the agent; empty or placeholder ${...} env values now read as unset, and plugin manifests wire OBSIDIAN_* through userConfig/env_vars instead of empty-string placeholders."
+breaking: false
+security: false
+---
+
+# 3.5.3 — 2026-09-13
+
+## Changed
+
+- **Bun engines floor raised to `>=1.4.0`** — required by mcp-ts-core 0.13.0.
+- **Development skills moved from `skills/` to `framework-skills/`** — Claude Code and Codex auto-load a plugin's root `skills/`, so installing this server's plugin no longer loads its development skills into the installing agent ([cyanheads/mcp-ts-core#428](https://github.com/cyanheads/mcp-ts-core/issues/428)).
+
+## Fixed
+
+- **An empty or whole-value `${...}` env value now reads as unset** — `OBSIDIAN_REQUEST_TIMEOUT_MS=''` starts with the default timeout and `OBSIDIAN_API_KEY='${OBSIDIAN_API_KEY}'` fails at startup as a missing key rather than as a format error; the server's own redundant empty-string guards on `baseUrl`/`omnisearchUrl` were removed as a result ([cyanheads/mcp-ts-core#427](https://github.com/cyanheads/mcp-ts-core/issues/427)).
+- **A cancelled single-request HTTP POST's SSE stream now closes immediately**, instead of waiting for keep-alive or session expiry ([cyanheads/mcp-ts-core#401](https://github.com/cyanheads/mcp-ts-core/issues/401)).
+- **Plugin manifests no longer ship empty-string env placeholders** — `manifest.json` and `.claude-plugin/plugin.json` set `OBSIDIAN_API_KEY`/`OBSIDIAN_BASE_URL` to `""`, which overrides a user's exported value with an unset one; both now source them via `userConfig` + `${user_config.<key>}`, and `.codex-plugin/mcp.json` lists them in `env_vars`.
+
+## Dependencies
+
+- `@cyanheads/mcp-ts-core` ^0.12.8 → ^0.13.0
+- `zod` ^4.5.4 → ^4.6.1
+- `@biomejs/biome` ^2.5.12 → ^2.5.13
+- `@types/node` ^26.4.1 → ^26.5.1
+- `ignore` ^7.0.8 → ^7.0.9

package/changelog/template.md

@@ -117,30 +117,13 @@ security: false
   in that unrelated item's metadata.
 
   TAG ANNOTATIONS — the annotated tag body renders as the GitHub Release body
-  via `gh release create --notes-from-tag`. The tag is a derivative of this
-  changelog entry — a condensed, scannable version, not a copy. Format:
-
-    <theme — omit version number, GitHub prepends it>
-                                                          ← blank line
-    <1-2 sentence context: what this release does>
-                                                          ← blank line
-    Dependency bumps:                                     ← section header
-                                                          ← blank line
-    - `@cyanheads/mcp-ts-core` ^0.9.1 → ^0.9.6          ← bullet
-                                                          ← blank line
-    Changed:                                              ← only sections with entries
-                                                          ← blank line
-    - `format()` output includes `query` in text mode
-                                                          ← blank line
-    Added:
-                                                          ← blank line
-    - `manifest.json` scaffolded for MCPB bundle support
-    - Install badges (Claude Desktop, Cursor, VS Code)
-                                                          ← blank line
-    <N> tests pass; `bun run devcheck` clean.             ← footer
-
-  Never a flat comma-separated string. Always structured markdown with
-  sections. The tag must scan well as a rendered GitHub Release page.
+  via `gh release create --notes-from-tag`. It is a condensed digest of this
+  entry, never a copy, and its format is owned by the `release-and-publish`
+  skill (step 4, "Create the annotated tag"): the entry's `summary:` as the
+  theme line without the version, flat headline bullets — no Keep-a-Changelog
+  section headers, no gates line — at most one deps line, issue backlinks,
+  and the changelog link last. In release-PR mode the `git-wrapup` skill
+  authors that digest as the PR body's `## Changes` and the tag copies it.
 -->
 
 ## Added

package/dist/config/server-config.d.ts

@@ -6,14 +6,14 @@
 import { z } from '@cyanheads/mcp-ts-core';
 declare const ServerConfigSchema: z.ZodObject<{
     apiKey: z.ZodString;
-    baseUrl: z.ZodPreprocess<z.ZodDefault<z.ZodString>, unknown>;
+    baseUrl: z.ZodDefault<z.ZodString>;
     verifySsl: z.ZodDefault<z.ZodUnion<readonly [z.ZodBoolean, z.ZodCodec<z.ZodString, z.ZodBoolean>]>>;
     requestTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     enableCommands: z.ZodDefault<z.ZodUnion<readonly [z.ZodBoolean, z.ZodCodec<z.ZodString, z.ZodBoolean>]>>;
     readPaths: z.ZodPreprocess<z.ZodPipe<z.ZodOptional<z.ZodArray<z.ZodString>>, z.ZodTransform<string[] | undefined, string[] | undefined>>, unknown>;
     writePaths: z.ZodPreprocess<z.ZodPipe<z.ZodOptional<z.ZodArray<z.ZodString>>, z.ZodTransform<string[] | undefined, string[] | undefined>>, unknown>;
     readOnly: z.ZodDefault<z.ZodUnion<readonly [z.ZodBoolean, z.ZodCodec<z.ZodString, z.ZodBoolean>]>>;
-    omnisearchUrl: z.ZodPreprocess<z.ZodOptional<z.ZodString>, unknown>;
+    omnisearchUrl: z.ZodOptional<z.ZodString>;
 }, z.core.$strip>;
 export type ServerConfig = z.infer<typeof ServerConfigSchema>;
 export declare function getServerConfig(): ServerConfig;

package/dist/config/server-config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAgF3C,QAAA,MAAM,kBAAkB;;;;;;;;;;iBAsDtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAa9C;AAED,iEAAiE;AACjE,wBAAgB,iBAAiB,IAAI,IAAI,CAExC"}
+{"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAgF3C,QAAA,MAAM,kBAAkB;;;;;;;;;;iBAgDtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAa9C;AAED,iEAAiE;AACjE,wBAAgB,iBAAiB,IAAI,IAAI,CAExC"}

package/dist/config/server-config.js

@@ -87,11 +87,11 @@ const ServerConfigSchema = z.object({
         .string()
         .min(1)
         .describe('Bearer token for the Obsidian Local REST API plugin (Settings → Community Plugins → Local REST API).'),
-    baseUrl: z.preprocess((val) => (typeof val === 'string' && val.trim() === '' ? undefined : val), z
+    baseUrl: z
         .string()
         .url()
         .default('http://127.0.0.1:27123')
-        .describe('Base URL of the Obsidian Local REST API. Defaults to http://127.0.0.1:27123 — enable "Non-encrypted (HTTP) Server" in the plugin settings to match. Use https://127.0.0.1:27124 to hit the always-on HTTPS port (self-signed cert; pair with OBSIDIAN_VERIFY_SSL=false).')),
+        .describe('Base URL of the Obsidian Local REST API. Defaults to http://127.0.0.1:27123 — enable "Non-encrypted (HTTP) Server" in the plugin settings to match. Use https://127.0.0.1:27124 to hit the always-on HTTPS port (self-signed cert; pair with OBSIDIAN_VERIFY_SSL=false).'),
     verifySsl: envBoolean
         .default(false)
         .describe("Whether to verify the TLS certificate on the Obsidian endpoint. Defaults to false because the plugin uses a self-signed cert. On Node, the dispatcher's `rejectUnauthorized` option handles this without any process-wide change. On Bun, the runtime ignores that option, so the service additionally sets `NODE_TLS_REJECT_UNAUTHORIZED=0` — that fallback is scoped to Bun only."),
@@ -109,11 +109,11 @@ const ServerConfigSchema = z.object({
     readOnly: envBoolean
         .default(false)
         .describe('Global kill switch. When true, denies every write regardless of OBSIDIAN_WRITE_PATHS, and suppresses the OBSIDIAN_ENABLE_COMMANDS pair (commands can mutate). Defaults to false.'),
-    omnisearchUrl: z.preprocess((val) => (typeof val === 'string' && val.trim() === '' ? undefined : val), z
+    omnisearchUrl: z
         .string()
         .url()
         .optional()
-        .describe('Override URL for the Omnisearch plugin HTTP server. When unset, derives from OBSIDIAN_BASE_URL host with port 51361 (falling back to http://localhost:51361). Used to enable the optional `omnisearch` mode on `obsidian_search_notes`; if the URL is unreachable at startup, the mode is omitted from the tool schema.')),
+        .describe('Override URL for the Omnisearch plugin HTTP server. When unset, derives from OBSIDIAN_BASE_URL host with port 51361 (falling back to http://localhost:51361). Used to enable the optional `omnisearch` mode on `obsidian_search_notes`; if the URL is unreachable at startup, the mode is omitted from the tool schema.'),
 });
 let _config;
 export function getServerConfig() {

package/dist/config/server-config.js.map

@@ -1 +1 @@
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package/dist/mcp-server/resources/definitions/index.d.ts

@@ -47,5 +47,10 @@ export declare const allResourceDefinitions: (import("@cyanheads/mcp-ts-core").R
         name: import("zod").ZodString;
         version: import("zod").ZodString;
     }, import("zod/v4/core").$strip>>;
+    apiExtensions: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodObject<{
+        id: import("zod").ZodString;
+        name: import("zod").ZodOptional<import("zod").ZodString>;
+        version: import("zod").ZodOptional<import("zod").ZodString>;
+    }, import("zod/v4/core").$strip>>>;
 }, import("zod/v4/core").$strip>, undefined>)[];
 //# sourceMappingURL=index.d.ts.map

package/dist/mcp-server/resources/definitions/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/resources/definitions/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAMH,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;+CAAoD,CAAC"}

package/dist/mcp-server/resources/definitions/obsidian-status.resource.d.ts

@@ -1,8 +1,10 @@
 /**
- * @fileoverview obsidian://status — reachability + auth check for the Obsidian
- * Local REST API plugin. Issues an anonymous probe (so the resource still
- * works when the key is wrong) and a separate authenticated probe so the
- * `authenticated` field reflects whether the configured key is accepted.
+ * @fileoverview obsidian://status — reachability, auth, and capability report
+ * for the Obsidian Local REST API plugin. One authenticated `GET /`: the route
+ * answers `200` whatever the key is and self-reports whether it was accepted,
+ * so a misconfigured key still yields the full reachability payload, and
+ * `apiExtensions` — which the plugin omits from the unauthenticated response —
+ * comes back on the same request.
  * @module mcp-server/resources/definitions/obsidian-status.resource
  */
 import { z } from '@cyanheads/mcp-ts-core';
@@ -19,5 +21,10 @@ export declare const obsidianStatus: import("@cyanheads/mcp-ts-core").ResourceDe
         name: z.ZodString;
         version: z.ZodString;
     }, z.core.$strip>>;
+    apiExtensions: z.ZodOptional<z.ZodArray<z.ZodObject<{
+        id: z.ZodString;
+        name: z.ZodOptional<z.ZodString>;
+        version: z.ZodOptional<z.ZodString>;
+    }, z.core.$strip>>>;
 }, z.core.$strip>, undefined>;
 //# sourceMappingURL=obsidian-status.resource.d.ts.map

package/dist/mcp-server/resources/definitions/obsidian-status.resource.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"obsidian-status.resource.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/resources/definitions/obsidian-status.resource.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAY,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGrD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;6BAmDzB,CAAC"}