npm - obsidian-mcp-server - Versions diffs - 3.1.8 → 3.1.10 - Mend

obsidian-mcp-server 3.1.8 → 3.1.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (26) hide show

package/CLAUDE.md CHANGED Viewed

@@ -1,8 +1,8 @@
 # Agent Protocol
 **Server:** obsidian-mcp-server
-**Version:** 3.1.8
-**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.8.20`
+**Version:** 3.1.10
+**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.1`
 **Engines:** Bun ≥1.3.11, Node ≥24.0.0
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
@@ -343,15 +343,16 @@ Each per-version file opens with YAML frontmatter:
 ```markdown
 ---
-summary: One-line headline, ≤250 chars  # required — powers the rollup index
+summary: One-line headline, ≤350 chars  # required — powers the rollup index
 breaking: false                          # optional — true flags breaking changes
+security: false                          # optional — true flags security fixes
 ---
 # 0.1.0 — YYYY-MM-DD
 ...
 ```
-`breaking: true` renders a `· ⚠️ Breaking` badge in the rollup — use it when consumers must update code on upgrade (signature changes, removed APIs, config renames).
+`breaking: true` renders a `· ⚠️ Breaking` badge — use it when consumers must update code on upgrade (signature changes, removed APIs, config renames). `security: true` renders a `· 🛡️ Security` badge and pairs with a `## Security` body section. When both are set, badges render `· ⚠️ Breaking · 🛡️ Security`.
 ---

package/README.md CHANGED Viewed

@@ -7,7 +7,7 @@
 <div align="center">
-[![npm](https://img.shields.io/npm/v/obsidian-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/obsidian-mcp-server) [![Version](https://img.shields.io/badge/Version-3.1.8-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
+[![npm](https://img.shields.io/npm/v/obsidian-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/obsidian-mcp-server) [![Version](https://img.shields.io/badge/Version-3.1.10-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
 [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/)
@@ -176,6 +176,7 @@ Built on [`@cyanheads/mcp-ts-core`](https://www.npmjs.com/package/@cyanheads/mcp
 - Declarative tool and resource definitions — single file per primitive, framework handles registration and validation
 - Unified error handling — handlers throw, framework catches, classifies, and formats. Tools advertise their failure surface via typed `errors[]` contracts.
+- Server-level `instructions` on `initialize` — surfaces deployment-specific orientation (active path policy, read-only mode, command-palette toggle) to spec-compliant clients alongside the static tool/resource catalog
 - Pluggable auth on the HTTP transport: `none`, `jwt`, `oauth`
 - Structured logging with optional OpenTelemetry tracing
 - STDIO and Streamable HTTP transports
@@ -295,7 +296,7 @@ MCP_TRANSPORT_TYPE=http OBSIDIAN_API_KEY=... bun run start:http
 | `MCP_AUTH_DISABLE_SCOPE_CHECKS` | When `true`, bypasses per-tool scope enforcement after the auth-context presence check. Token signature, audience, issuer, and expiry validation remain intact. Use only when a custom claim can't be injected and combine with `OBSIDIAN_READ_PATHS` / `OBSIDIAN_WRITE_PATHS` / `OBSIDIAN_READ_ONLY` for access control. A `WARNING` is logged at startup whenever the bypass is active. | `false` |
 | `MCP_LOG_LEVEL` | Log level (RFC 5424). | `info` |
 | `LOGS_DIR` | Directory for log files (Node.js only). | `<project-root>/logs` |
-| `OTEL_ENABLED` | Enable OpenTelemetry. | `false` |
+| `OTEL_ENABLED` | Enable [OpenTelemetry instrumentation](https://github.com/cyanheads/mcp-ts-core/tree/main/docs/telemetry) (spans, metrics, completion logs). | `false` |
 See [`.env.example`](./.env.example) for the full list of optional overrides.

package/changelog/3.1.x/3.1.10.md ADDED Viewed

@@ -0,0 +1,20 @@
+---
+summary: "Server-level `instructions` on `initialize` surfaces deployment-specific orientation (path policy, read-only mode, command-palette toggle) to spec-compliant clients. Framework bump to `@cyanheads/mcp-ts-core ^0.9.1`."
+breaking: false
+security: false
+---
+# 3.1.10 — 2026-05-16
+## Added
+- **`buildInstructions()` in `src/index.ts`** — composes the server-level `instructions` string sent on every `initialize`. Always emits a baseline orientation paragraph (tool prefix, path addressing, tag hierarchy with parent roll-up), then layers in deployment-specific sections when active: read-only mode, scoped `OBSIDIAN_READ_PATHS` / `OBSIDIAN_WRITE_PATHS`, and the opt-in command-palette pair. The conditional lines mirror the same scope strings used by `path_forbidden` error data so a client sees consistent guidance whether it reads `initialize.instructions` or an error response.
+## Changed
+- **`@cyanheads/mcp-ts-core` `^0.8.20 → ^0.9.1`** — adopts `createApp({ instructions })` (new in 0.9.0). Definition linting is now build-time only; `schema-format-portability` is on by default (error-level). See the framework's [0.9.x changelog](https://github.com/cyanheads/mcp-ts-core/tree/main/changelog/0.9.x) for the full set.
+- **`undici` `^8.2.0 → ^8.3.0`**, **`@types/node` `^25.6.2 → ^25.8.0`** — routine refresh.
+- **`scripts/devcheck.ts`** — `bun outdated` markdown-row parser fixed. Splits on `|` start at index `[1]` (leading empty cell), and the trailing `(dev|peer|prod|optional)` workspace-type marker is stripped before the allowlist lookup so bare package names match.
+- **Changelog tooling** — summary soft cap raised 250 → 350 chars across `changelog/template.md`, `scripts/build-changelog.ts` (`SUMMARY_MAX_LENGTH`), and the CLAUDE.md authoring section. CLAUDE.md also picks up the `security: false` frontmatter field and the `🛡️ Security` badge note.
+- **Synced 8 skills** from `node_modules/@cyanheads/mcp-ts-core/skills/`: `add-tool` 2.8→2.9, `api-errors` 1.5→1.6, `api-linter` 1.2→1.3, `api-workers` 1.3→1.4, `design-mcp-server` 2.10→2.11, `field-test` 2.3→2.4, `polish-docs-meta` 1.7→1.8, `tool-defs-analysis` 1.1→1.2. Mirrored into the agent directory.
+- **README** — new Features bullet for server-level `instructions`. `OTEL_ENABLED` env-var row now links to the framework's [telemetry docs](https://github.com/cyanheads/mcp-ts-core/tree/main/docs/telemetry).

package/changelog/3.1.x/3.1.9.md ADDED Viewed

@@ -0,0 +1,21 @@
+---
+summary: "Section extractor and outgoing-link parser respect fenced code blocks and inline code — markdown-about-markdown notes stop yielding false-positive headings, block refs, and links. Adds `ambiguous_path` to the typed-error contract."
+breaking: false
+security: false
+---
+# 3.1.9 — 2026-05-11
+## Fixed
+- **`extractSection`** — heading and block scans now skip lines inside fenced code blocks. A note documenting `# heading` or `paragraph ^abc` inside a ` ```markdown ` fence no longer false-matches as a real section, and slicing no longer terminates early on a fenced `#` header. Tilde fences (`~~~`) get the same treatment; unclosed fences extend to EOF.
+- **`obsidian_get_note` `includeLinks`** — `parseOutgoingLinks` blanks fenced code blocks and inline code spans before regex extraction, so `` `[[example]]` `` and fenced wikilink/markdown-link samples stop appearing in `outgoingLinks`.
+## Added
+- **`computeFenceMask(lines, from?)`** — exported from `services/obsidian/section-extractor.ts`. Returns a `boolean[]` marking lines inside CommonMark fenced code blocks (matching opener char and length, no info string on close). Shared by the extractor and the outgoing-link parser.
+- **`ambiguous_path`** — new `errors[]` entry on `obsidian_get_note` and `obsidian_open_in_ui` (`JsonRpcErrorCode.Conflict`). Fires when `withCaseFallback` detects multiple files in the parent directory whose names differ only in case. Recovery: retry with one of the exact paths in `data.matches`.
+## Changed
+- **`withCaseFallback` (`_shared/suggest-paths.ts`)** — the conflict thrown on multiple case-insensitive matches now carries `reason: 'ambiguous_path'` and spreads `ctx.recoveryFor('ambiguous_path')` so the contract recovery hint mirrors onto the wire.

package/changelog/template.md CHANGED Viewed

@@ -4,7 +4,7 @@
 # to author a new release. Set that file's H1 to `# <version> — YYYY-MM-DD`
 # with a concrete date.
-# Required. One-line GitHub Release-style headline. ~250 character soft cap.
+# Required. One-line GitHub Release-style headline. 350 character cap.
 # Default short and scannable. Don't pad, don't stitch unrelated changes with
 # semicolons — pick the headline. Quotes required: unquoted YAML treats `: `
 # inside the value as a key separator and fails GitHub's strict parser.

package/dist/index.js CHANGED Viewed

@@ -15,6 +15,29 @@ import { initObsidianService } from './services/obsidian/obsidian-service.js';
 import { PathPolicy } from './services/obsidian/path-policy.js';
 const config = getServerConfig();
 const policy = new PathPolicy(config);
+/**
+ * Build the server-level `instructions` string sent on every `initialize`.
+ * Provides baseline orientation about the server and then layers in
+ * deployment-specific lines (read-only mode, scoped paths, command-palette
+ * toggle) when those flags are active.
+ */
+function buildInstructions() {
+    const sections = [
+        'Obsidian vault MCP server backed by the Local REST API plugin. Use `obsidian_*` tools to search, read, and edit vault notes. Notes are addressed by vault-relative path including the file extension (e.g. `Folder/Note.md`). Tags support hierarchical `parent/child` notation; counts roll up to parents.',
+    ];
+    if (config.readOnly) {
+        sections.push('Read-only mode is active (OBSIDIAN_READ_ONLY=true): every write tool rejects every path with `path_forbidden` / `read_only_mode`.');
+    }
+    else if (!policy.isUnrestricted) {
+        const { readPaths, writePaths } = policy.describe();
+        const render = (scope) => typeof scope === 'string' ? scope : scope.map((p) => `'${p}'`).join(', ');
+        sections.push(`Vault path policy is enforced. Readable: ${render(readPaths)}. Writable: ${render(writePaths)}. Paths outside scope reject with \`path_forbidden\` — error data carries the active scope so you can self-correct.`);
+    }
+    if (config.enableCommands && !config.readOnly) {
+        sections.push('Command-palette tools (`obsidian_list_commands`, `obsidian_execute_command`) are enabled and can fire any Obsidian command. Commands are opaque and may be destructive — prefer dedicated tools when one fits.');
+    }
+    return sections.join('\n\n');
+}
 const writeTools = config.readOnly
     ? writeToolDefinitions.map((def) => disabledTool(def, {
         reason: 'Disabled by OBSIDIAN_READ_ONLY=true.',
@@ -36,6 +59,7 @@ const { services } = await createApp({
     tools,
     resources: allResourceDefinitions,
     prompts: allPromptDefinitions,
+    instructions: buildInstructions(),
     setup() {
         initObsidianService(config);
     },

package/dist/index.js.map CHANGED Viewed

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package/dist/mcp-server/tools/definitions/_shared/suggest-paths.js CHANGED Viewed

@@ -54,7 +54,12 @@ export async function withCaseFallback(ctx, svc, target, fn) {
         }
         if (probe.caseMatches.length > 1) {
             const list = probe.caseMatches.map((m) => `"${m}"`).join(', ');
-            throw conflict(`Ambiguous case-insensitive matches for '${target.path}': ${list}.`, { path: target.path, matches: probe.caseMatches }, { cause: err });
+            throw conflict(`Ambiguous case-insensitive matches for '${target.path}': ${list}.`, {
+                path: target.path,
+                reason: 'ambiguous_path',
+                matches: probe.caseMatches,
+                ...ctx.recoveryFor('ambiguous_path'),
+            }, { cause: err });
         }
         if (probe.extInsensitive.length === 0)
             throw err;

package/dist/mcp-server/tools/definitions/_shared/suggest-paths.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/index.d.ts CHANGED Viewed

@@ -98,6 +98,11 @@ export declare const readToolDefinitions: (import("@cyanheads/mcp-ts-core").Tool
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: "The vault path does not resolve to an existing note.";
     readonly recovery: "Verify the path with obsidian_list_notes or use obsidian_search_notes to locate the note.";
+}, {
+    readonly reason: "ambiguous_path";
+    readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Conflict;
+    readonly when: "The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).";
+    readonly recovery: "Retry with one of the exact paths listed in `matches` on the error data.";
 }, {
     readonly reason: "no_active_file";
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
@@ -181,6 +186,11 @@ export declare const readToolDefinitions: (import("@cyanheads/mcp-ts-core").Tool
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: "`failIfMissing: true` (default) and the path does not exist in the vault. Pass `failIfMissing: false` to allow Obsidian to create the file on open.";
     readonly recovery: "Verify the path with obsidian_list_notes or pass failIfMissing false to create on open.";
+}, {
+    readonly reason: "ambiguous_path";
+    readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Conflict;
+    readonly when: "The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).";
+    readonly recovery: "Retry with one of the exact paths listed in `matches` on the error data.";
 }]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     mode: import("zod").ZodEnum<{
         text: "text";
@@ -964,6 +974,11 @@ export declare const baseToolDefinitions: (import("@cyanheads/mcp-ts-core").Tool
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: "The vault path does not resolve to an existing note.";
     readonly recovery: "Verify the path with obsidian_list_notes or use obsidian_search_notes to locate the note.";
+}, {
+    readonly reason: "ambiguous_path";
+    readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Conflict;
+    readonly when: "The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).";
+    readonly recovery: "Retry with one of the exact paths listed in `matches` on the error data.";
 }, {
     readonly reason: "no_active_file";
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
@@ -1207,6 +1222,11 @@ export declare const baseToolDefinitions: (import("@cyanheads/mcp-ts-core").Tool
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: "`failIfMissing: true` (default) and the path does not exist in the vault. Pass `failIfMissing: false` to allow Obsidian to create the file on open.";
     readonly recovery: "Verify the path with obsidian_list_notes or pass failIfMissing false to create on open.";
+}, {
+    readonly reason: "ambiguous_path";
+    readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Conflict;
+    readonly when: "The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).";
+    readonly recovery: "Retry with one of the exact paths listed in `matches` on the error data.";
 }]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     target: import("zod").ZodDiscriminatedUnion<[import("zod").ZodObject<{
         type: import("zod").ZodLiteral<"path">;

package/dist/mcp-server/tools/definitions/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAiBH,gFAAgF;AAChF,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;MAM/B,CAAC;AAEF,kFAAkF;AAClF,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;MAQhC,CAAC;AAEF,qEAAqE;AACrE,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;MAAoD,CAAC;AAErF,mHAAmH;AACnH,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;+CAAiD,CAAC"}

package/dist/mcp-server/tools/definitions/obsidian-get-note.tool.d.ts CHANGED Viewed

@@ -95,6 +95,11 @@ export declare const obsidianGetNote: import("@cyanheads/mcp-ts-core").ToolDefin
     readonly code: JsonRpcErrorCode.NotFound;
     readonly when: "The vault path does not resolve to an existing note.";
     readonly recovery: "Verify the path with obsidian_list_notes or use obsidian_search_notes to locate the note.";
+}, {
+    readonly reason: "ambiguous_path";
+    readonly code: JsonRpcErrorCode.Conflict;
+    readonly when: "The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).";
+    readonly recovery: "Retry with one of the exact paths listed in `matches` on the error data.";
 }, {
     readonly reason: "no_active_file";
     readonly code: JsonRpcErrorCode.NotFound;

package/dist/mcp-server/tools/definitions/obsidian-get-note.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"obsidian-get-note.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/obsidian-get-note.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAYjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoS1B,CAAC"}

package/dist/mcp-server/tools/definitions/obsidian-get-note.tool.js CHANGED Viewed

@@ -6,7 +6,7 @@
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getObsidianService } from '../../../services/obsidian/obsidian-service.js';
-import { extractSection } from '../../../services/obsidian/section-extractor.js';
+import { computeFenceMask, extractSection } from '../../../services/obsidian/section-extractor.js';
 import { SectionSchema, TargetSchema } from './_shared/schemas.js';
 import { withCaseFallback } from './_shared/suggest-paths.js';
 const StatSchema = z.object({
@@ -108,6 +108,12 @@ export const obsidianGetNote = tool('obsidian_get_note', {
             when: 'The vault path does not resolve to an existing note.',
             recovery: 'Verify the path with obsidian_list_notes or use obsidian_search_notes to locate the note.',
         },
+        {
+            reason: 'ambiguous_path',
+            code: JsonRpcErrorCode.Conflict,
+            when: 'The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).',
+            recovery: 'Retry with one of the exact paths listed in `matches` on the error data.',
+        },
         {
             reason: 'no_active_file',
             code: JsonRpcErrorCode.NotFound,
@@ -287,10 +293,14 @@ function formatIsoTime(ms) {
  * `#section`) and markdown links (`[text](target)`). External URIs
  * (any `scheme:` form) are filtered out — only vault-internal references
  * remain. No existence checks; this is the link graph as written.
+ *
+ * Fenced code blocks and inline code are blanked before matching so notes
+ * documenting markdown syntax don't yield false-positive links.
  */
 function parseOutgoingLinks(content) {
+    const cleaned = stripMarkdownCode(content);
     const links = [];
-    for (const m of content.matchAll(/!?\[\[([^\]|#]+)(?:[#|][^\]]*)?\]\]/g)) {
+    for (const m of cleaned.matchAll(/!?\[\[([^\]|#]+)(?:[#|][^\]]*)?\]\]/g)) {
         const target = m[1]?.trim();
         if (target)
             links.push({ target, type: 'wikilink' });
@@ -300,7 +310,7 @@ function parseOutgoingLinks(content) {
      * run. The bracketed form is the markdown spec's escape hatch for paths
      * containing spaces.
      */
-    for (const m of content.matchAll(/\[[^\]]*\]\((<[^<>\n]+>|[^)\s]+)(?:\s+"[^"]*")?\)/g)) {
+    for (const m of cleaned.matchAll(/\[[^\]]*\]\((<[^<>\n]+>|[^)\s]+)(?:\s+"[^"]*")?\)/g)) {
         let target = m[1]?.trim();
         if (!target)
             continue;
@@ -313,4 +323,19 @@ function parseOutgoingLinks(content) {
     }
     return links;
 }
+/**
+ * Return `content` with fenced code blocks and inline code spans replaced by
+ * spaces of equal length so downstream regex offsets remain coherent. Inline-
+ * code stripping is line-bounded — covers the common `` `[[example]]` `` case
+ * but not the rare multi-line backtick spans permitted by CommonMark.
+ */
+function stripMarkdownCode(content) {
+    const lines = content.split('\n');
+    const inFence = computeFenceMask(lines);
+    return lines
+        .map((line, i) => inFence[i]
+        ? ' '.repeat(line.length)
+        : line.replace(/`[^`\n]+`/g, (s) => ' '.repeat(s.length)))
+        .join('\n');
+}
 //# sourceMappingURL=obsidian-get-note.tool.js.map

package/dist/mcp-server/tools/definitions/obsidian-get-note.tool.js.map CHANGED Viewed

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package/dist/mcp-server/tools/definitions/obsidian-open-in-ui.tool.d.ts CHANGED Viewed

@@ -24,5 +24,10 @@ export declare const obsidianOpenInUi: import("@cyanheads/mcp-ts-core").ToolDefi
     readonly code: JsonRpcErrorCode.NotFound;
     readonly when: "`failIfMissing: true` (default) and the path does not exist in the vault. Pass `failIfMissing: false` to allow Obsidian to create the file on open.";
     readonly recovery: "Verify the path with obsidian_list_notes or pass failIfMissing false to create on open.";
+}, {
+    readonly reason: "ambiguous_path";
+    readonly code: JsonRpcErrorCode.Conflict;
+    readonly when: "The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).";
+    readonly recovery: "Retry with one of the exact paths listed in `matches` on the error data.";
 }]>;
 //# sourceMappingURL=obsidian-open-in-ui.tool.d.ts.map

package/dist/mcp-server/tools/definitions/obsidian-open-in-ui.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"obsidian-open-in-ui.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/obsidian-open-in-ui.tool.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAK3E,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;GA4G3B,CAAC"}

package/dist/mcp-server/tools/definitions/obsidian-open-in-ui.tool.js CHANGED Viewed

@@ -43,6 +43,12 @@ export const obsidianOpenInUi = tool('obsidian_open_in_ui', {
             when: '`failIfMissing: true` (default) and the path does not exist in the vault. Pass `failIfMissing: false` to allow Obsidian to create the file on open.',
             recovery: 'Verify the path with obsidian_list_notes or pass failIfMissing false to create on open.',
         },
+        {
+            reason: 'ambiguous_path',
+            code: JsonRpcErrorCode.Conflict,
+            when: 'The parent directory contains multiple files whose names differ only in case (case-sensitive filesystems only).',
+            recovery: 'Retry with one of the exact paths listed in `matches` on the error data.',
+        },
     ],
     async handler(input, ctx) {
         const svc = getObsidianService();

package/dist/mcp-server/tools/definitions/obsidian-open-in-ui.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/obsidian/section-extractor.d.ts CHANGED Viewed

@@ -10,4 +10,12 @@ import type { NoteJson, SectionTarget } from './types.js';
  * Throws `NotFound` if the target does not exist in the note.
  */
 export declare function extractSection(note: NoteJson, section: SectionTarget): string | unknown;
+/**
+ * Mark line indices that fall inside fenced code blocks (` ``` ` or `~~~`) so
+ * downstream scanning doesn't false-match on markdown-about-markdown notes.
+ * The closer must match the opener's fence char, have at least as many fence
+ * chars, and carry no info string (per CommonMark). An unclosed fence extends
+ * to EOF. Pass `from` to skip a leading frontmatter block.
+ */
+export declare function computeFenceMask(lines: string[], from?: number): boolean[];
 //# sourceMappingURL=section-extractor.d.ts.map

package/dist/services/obsidian/section-extractor.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"section-extractor.d.ts","sourceRoot":"","sources":["../../../src/services/obsidian/section-extractor.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAE1D;;;GAGG;AACH,wBAAgB,cAAc,CAAC,IAAI,EAAE,QAAQ,EAAE,OAAO,EAAE,aAAa,GAAG,MAAM,GAAG,OAAO,CASvF;AAgHD;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,IAAI,SAAI,GAAG,OAAO,EAAE,CA0BrE"}

package/dist/services/obsidian/section-extractor.js CHANGED Viewed

@@ -42,12 +42,15 @@ function extractHeading(content, target) {
     }
     const lines = content.split('\n');
     const bodyStart = frontmatterEndLine(lines);
+    const inFence = computeFenceMask(lines, bodyStart);
     let cursor = bodyStart;
     let parentLevel = 0;
     for (const part of parts) {
         let found = -1;
         let foundLevel = 0;
         for (let i = cursor; i < lines.length; i++) {
+            if (inFence[i])
+                continue;
             const m = /^(#{1,6})\s+(.*?)\s*$/.exec(lines[i] ?? '');
             if (!m)
                 continue;
@@ -73,6 +76,8 @@ function extractHeading(content, target) {
     const startLine = cursor - 1;
     let endLine = lines.length;
     for (let i = cursor; i < lines.length; i++) {
+        if (inFence[i])
+            continue;
         const m = /^(#{1,6})\s+/.exec(lines[i] ?? '');
         if (m && (m[1] ?? '').length <= parentLevel) {
             endLine = i;
@@ -89,9 +94,12 @@ function extractHeading(content, target) {
 function extractBlock(content, blockId) {
     const lines = content.split('\n');
     const bodyStart = frontmatterEndLine(lines);
+    const inFence = computeFenceMask(lines, bodyStart);
     const escaped = blockId.replace(/[\\^$.*+?()[\]{}|]/g, '\\$&');
     const ref = new RegExp(`(^|\\s)\\^${escaped}\\s*$`);
     for (let i = bodyStart; i < lines.length; i++) {
+        if (inFence[i])
+            continue;
         if (ref.test(lines[i] ?? '')) {
             let start = i;
             while (start > bodyStart) {
@@ -121,4 +129,38 @@ function frontmatterEndLine(lines) {
     }
     return 0;
 }
+/**
+ * Mark line indices that fall inside fenced code blocks (` ``` ` or `~~~`) so
+ * downstream scanning doesn't false-match on markdown-about-markdown notes.
+ * The closer must match the opener's fence char, have at least as many fence
+ * chars, and carry no info string (per CommonMark). An unclosed fence extends
+ * to EOF. Pass `from` to skip a leading frontmatter block.
+ */
+export function computeFenceMask(lines, from = 0) {
+    const mask = new Array(lines.length).fill(false);
+    let openChar = null;
+    let openLen = 0;
+    for (let i = from; i < lines.length; i++) {
+        const line = lines[i] ?? '';
+        const m = /^\s{0,3}([`~]{3,})/.exec(line);
+        if (openChar === null) {
+            if (m) {
+                const fence = m[1] ?? '';
+                openChar = fence[0];
+                openLen = fence.length;
+                mask[i] = true;
+            }
+            continue;
+        }
+        mask[i] = true;
+        if (m && /^\s{0,3}[`~]{3,}\s*$/.test(line)) {
+            const fence = m[1] ?? '';
+            if (fence[0] === openChar && fence.length >= openLen) {
+                openChar = null;
+                openLen = 0;
+            }
+        }
+    }
+    return mask;
+}
 //# sourceMappingURL=section-extractor.js.map

package/dist/services/obsidian/section-extractor.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "obsidian-mcp-server",
-  "version": "3.1.8",
+  "version": "3.1.10",
   "mcpName": "io.github.cyanheads/obsidian-mcp-server",
   "description": "MCP server for Obsidian vaults — read, write, search, and surgically edit notes, tags, and frontmatter via the Local REST API plugin. STDIO or Streamable HTTP.",
   "type": "module",
@@ -76,15 +76,15 @@
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.8.20",
+    "@cyanheads/mcp-ts-core": "^0.9.1",
     "@types/js-yaml": "^4.0.9",
     "js-yaml": "^4.1.1",
     "pino-pretty": "^13.1.3",
-    "undici": "^8.2.0"
+    "undici": "^8.3.0"
   },
   "devDependencies": {
     "@biomejs/biome": "^2.4.15",
-    "@types/node": "^25.6.2",
+    "@types/node": "^25.8.0",
     "depcheck": "^1.4.7",
     "ignore": "^7.0.5",
     "tsc-alias": "^1.8.17",

package/server.json CHANGED Viewed

@@ -6,14 +6,14 @@
     "url": "https://github.com/cyanheads/obsidian-mcp-server",
     "source": "github"
   },
-  "version": "3.1.8",
+  "version": "3.1.10",
   "packages": [
     {
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "obsidian-mcp-server",
       "runtimeHint": "node",
-      "version": "3.1.8",
+      "version": "3.1.10",
       "packageArguments": [
         {
           "type": "positional",
@@ -95,7 +95,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "obsidian-mcp-server",
       "runtimeHint": "node",
-      "version": "3.1.8",
+      "version": "3.1.10",
       "packageArguments": [
         {
           "type": "positional",