obedding 1.0.0 → 1.0.2

package/dist/lmstudio.js

@@ -0,0 +1,109 @@
+/**
+ * LM Studio API client for generating embeddings using GGUF models
+ *
+ * LM Studio provides an OpenAI-compatible API for local models.
+ * Default port: 1234
+ * Default model: Qwen3-Embedding-0.6B-GGUF (from Hugging Face)
+ */
+const LMSTUDIO_BASE_URL = process.env.LMSTUDIO_BASE_URL || 'http://localhost:1234';
+const DEFAULT_MODEL = 'text-embedding-qwen3-embedding-0.6b';
+/**
+ * Check if LM Studio is running
+ */
+export async function checkLMStudioConnection() {
+    try {
+        const response = await fetch(`${LMSTUDIO_BASE_URL}/v1/models`, {
+            method: 'GET',
+            signal: AbortSignal.timeout(5000)
+        });
+        return response.ok;
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ * Generate embedding for text using LM Studio
+ */
+export async function generateEmbedding(text, model = DEFAULT_MODEL) {
+    const response = await fetch(`${LMSTUDIO_BASE_URL}/v1/embeddings`, {
+        method: 'POST',
+        headers: {
+            'Content-Type': 'application/json',
+        },
+        body: JSON.stringify({
+            model,
+            input: text,
+            encoding_format: 'float'
+        })
+    });
+    if (!response.ok) {
+        let errorMessage = response.statusText;
+        try {
+            const error = await response.json();
+            if (error.error?.message) {
+                errorMessage = error.error.message;
+            }
+        }
+        catch {
+            try {
+                errorMessage = await response.text();
+            }
+            catch {
+                // Use status text
+            }
+        }
+        throw new Error(`LM Studio API error: ${errorMessage}`);
+    }
+    const data = await response.json();
+    if (!data.data || !Array.isArray(data.data) || data.data.length === 0) {
+        throw new Error('Invalid embedding response from LM Studio');
+    }
+    const embedding = data.data[0].embedding;
+    if (!embedding || !Array.isArray(embedding)) {
+        throw new Error('Invalid embedding format in LM Studio response');
+    }
+    return embedding;
+}
+/**
+ * Batch generate embeddings for multiple texts
+ */
+export async function generateEmbeddings(texts, model = DEFAULT_MODEL, onProgress) {
+    const embeddings = [];
+    for (let i = 0; i < texts.length; i++) {
+        const embedding = await generateEmbedding(texts[i], model);
+        embeddings.push(embedding);
+        if (onProgress) {
+            onProgress(i + 1, texts.length);
+        }
+    }
+    return embeddings;
+}
+/**
+ * Get model information
+ */
+export async function getModelInfo(model = DEFAULT_MODEL) {
+    try {
+        const response = await fetch(`${LMSTUDIO_BASE_URL}/v1/models`);
+        if (!response.ok) {
+            return null;
+        }
+        const data = await response.json();
+        const models = data.data || [];
+        // Try to find exact or partial match
+        const modelInfo = models.find((m) => m.id === model || m.id.includes(model) || model.includes(m.id));
+        if (modelInfo) {
+            // Note: LM Studio doesn't provide dimensions in the models list
+            // We'd need to generate an embedding to determine dimensions
+            return {
+                name: modelInfo.id,
+                dimensions: undefined
+            };
+        }
+        return null;
+    }
+    catch {
+        return null;
+    }
+}
+//# sourceMappingURL=lmstudio.js.map

package/dist/lmstudio.js.map

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package/dist/preprocessor.d.ts

@@ -0,0 +1,34 @@
+/**
+ * Content preprocessing for embedding generation
+ *
+ * The Qwen3-Embedding-0.6B-4bit-DWQ model is overly sensitive to text STRUCTURE patterns.
+ * Obsidian notes with similar markdown structure get identical embeddings.
+ *
+ * This module preprocesses note content to:
+ * 1. Extract semantic metadata (title, tags, repo, context)
+ * 2. Remove markdown structural elements
+ * 3. Normalize text for consistent embedding
+ */
+import { NoteFile } from './scanner.js';
+export interface PreprocessedContent {
+    /** Original content without frontmatter */
+    text: string;
+    /** Metadata as keyword string */
+    metadata: string;
+    /** Combined metadata + cleaned text for embedding */
+    combined: string;
+}
+/**
+ * Preprocess note content for embedding generation
+ */
+export declare function preprocessNote(note: NoteFile): PreprocessedContent;
+/**
+ * Check if embeddings have sufficient variance
+ * Returns true if embeddings are too similar (potential problem)
+ */
+export declare function checkEmbeddingVariance(embeddings: number[][], threshold?: number): {
+    variance: number;
+    isTooLow: boolean;
+    avgSimilarity: number;
+};
+//# sourceMappingURL=preprocessor.d.ts.map

package/dist/preprocessor.d.ts.map

@@ -0,0 +1 @@
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package/dist/preprocessor.js

@@ -0,0 +1,146 @@
+/**
+ * Content preprocessing for embedding generation
+ *
+ * The Qwen3-Embedding-0.6B-4bit-DWQ model is overly sensitive to text STRUCTURE patterns.
+ * Obsidian notes with similar markdown structure get identical embeddings.
+ *
+ * This module preprocesses note content to:
+ * 1. Extract semantic metadata (title, tags, repo, context)
+ * 2. Remove markdown structural elements
+ * 3. Normalize text for consistent embedding
+ */
+/**
+ * Preprocess note content for embedding generation
+ */
+export function preprocessNote(note) {
+    const { data, content } = note.frontmatter;
+    // Extract metadata as keywords for semantic context
+    const metadataParts = [];
+    if (data.title) {
+        metadataParts.push(`title:${data.title}`);
+    }
+    if (data.tags) {
+        const tags = Array.isArray(data.tags) ? data.tags.join(',') : data.tags;
+        metadataParts.push(`tags:${tags}`);
+    }
+    if (data.repo) {
+        metadataParts.push(`repo:${data.repo}`);
+    }
+    if (data.context) {
+        metadataParts.push(`context:${data.context}`);
+    }
+    if (data.type) {
+        metadataParts.push(`type:${data.type}`);
+    }
+    // Clean markdown structure while preserving semantic content
+    const cleaned = cleanMarkdownStructure(content);
+    // Combine metadata and cleaned content
+    // Metadata comes first to provide context for the embedding model
+    const metadataStr = metadataParts.join(' ');
+    const combined = metadataStr ? `${metadataStr} ${cleaned}` : cleaned;
+    return {
+        text: cleaned,
+        metadata: metadataStr,
+        combined
+    };
+}
+/**
+ * Remove markdown structural elements while preserving content
+ */
+function cleanMarkdownStructure(content) {
+    return content
+        // Remove YAML frontmatter (already removed by gray-matter, but safety check)
+        .replace(/^---\n.*?\n---\n/gs, '')
+        // Remove ATX-style headings (# ## ###) but keep the heading text
+        .replace(/^#{1,6}\s+/gm, '')
+        // Remove Setext-style underlines for headings
+        .replace(/^[-=]{3,}\s*$/gm, '')
+        // Remove unordered list markers (-, *, +)
+        .replace(/^[\s]*[-*+]\s+/gm, '')
+        // Remove ordered list markers (1., 2., etc.)
+        .replace(/^[\s]*\d+\.\s+/gm, '')
+        // Remove checkbox markers [ ] and [x]
+        .replace(/\[[ xX]\]\s*/g, '')
+        // Remove horizontal rules (---, ***, ___)
+        .replace(/^[\s]*[-_*]{3,}\s*$/gm, '')
+        // Remove blockquote markers (>)
+        .replace(/^>\s*/gm, '')
+        // Remove code block markers (``` and ~~~) but keep code content
+        .replace(/^```[\w]*\n?/gm, '')
+        .replace(/^~~~[\w]*\n?/gm, '')
+        // Remove inline code backticks but keep content
+        .replace(/`([^`]+)`/g, '$1')
+        // Remove bold/italic markers
+        .replace(/\*\*\*([^*]+)\*\*\*/g, '$1')
+        .replace(/\*\*([^*]+)\*\*/g, '$1')
+        .replace(/\*([^*]+)\*/g, '$1')
+        .replace(/___([^_]+)___/g, '$1')
+        .replace(/__([^_]+)__/g, '$1')
+        .replace(/_([^_]+)_/g, '$1')
+        // Remove strikethrough
+        .replace(/~~([^~]+)~~/g, '$1')
+        // Remove links but keep link text
+        .replace(/\[([^\]]+)\]\([^)]+\)/g, '$1')
+        .replace(/\[([^\]]+)\]\[[^\]]+\]/g, '$1')
+        // Remove image links
+        .replace(/!\[([^\]]*)\]\([^)]+\)/g, '$1')
+        // Remove table formatting but keep content
+        .replace(/^\|[-:\s|]+\|\s*$/gm, '')
+        .replace(/\|/g, ' ')
+        // Remove footnote references
+        .replace(/\[\^([^\]]+)\]/g, '')
+        // Remove HTML tags
+        .replace(/<[^>]+>/g, '')
+        // Normalize excessive whitespace (3+ newlines to 2)
+        .replace(/\n{3,}/g, '\n\n')
+        // Normalize multiple spaces to single space
+        .replace(/[ \t]+/g, ' ')
+        // Trim leading/trailing whitespace
+        .trim();
+}
+/**
+ * Check if embeddings have sufficient variance
+ * Returns true if embeddings are too similar (potential problem)
+ */
+export function checkEmbeddingVariance(embeddings, threshold = 0.95) {
+    if (embeddings.length < 2) {
+        return { variance: 1, isTooLow: false, avgSimilarity: 0 };
+    }
+    // Calculate pairwise cosine similarities
+    let totalSimilarity = 0;
+    let comparisons = 0;
+    for (let i = 0; i < Math.min(embeddings.length, 10); i++) {
+        for (let j = i + 1; j < Math.min(embeddings.length, 10); j++) {
+            const similarity = cosineSimilarity(embeddings[i].slice(0, 100), // Only check first 100 dims for speed
+            embeddings[j].slice(0, 100));
+            totalSimilarity += similarity;
+            comparisons++;
+        }
+    }
+    const avgSimilarity = comparisons > 0 ? totalSimilarity / comparisons : 0;
+    const variance = 1 - avgSimilarity;
+    return {
+        variance,
+        isTooLow: avgSimilarity > threshold,
+        avgSimilarity
+    };
+}
+/**
+ * Calculate cosine similarity between two vectors
+ */
+function cosineSimilarity(a, b) {
+    if (a.length !== b.length) {
+        // Truncate to shorter length
+        const minLen = Math.min(a.length, b.length);
+        a = a.slice(0, minLen);
+        b = b.slice(0, minLen);
+    }
+    const dotProduct = a.reduce((sum, val, i) => sum + val * b[i], 0);
+    const magnitudeA = Math.sqrt(a.reduce((sum, val) => sum + val * val, 0));
+    const magnitudeB = Math.sqrt(b.reduce((sum, val) => sum + val * val, 0));
+    if (magnitudeA === 0 || magnitudeB === 0) {
+        return 0;
+    }
+    return dotProduct / (magnitudeA * magnitudeB);
+}
+//# sourceMappingURL=preprocessor.js.map

package/dist/preprocessor.js.map

@@ -0,0 +1 @@
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package/dist/search.d.ts

@@ -17,6 +17,7 @@ export interface SearchOptions {
     storagePath: string;
     topK?: number;
     model?: string;
+    backend?: 'ollama' | 'mlx' | 'lmstudio';
     minScore?: number;
 }
 export interface SearchResponse {

package/dist/search.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../src/search.ts"],"names":[],"mappings":"AAOA,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE;QACR,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,CAAC;IACF,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,OAAO,CAAC,EAAE,QAAQ,GAAG,KAAK,GAAG,UAAU,CAAC;IACxC,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,cAAc;IAC7B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,YAAY,EAAE,CAAC;IACxB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED;;GAEG;AACH,wBAAsB,WAAW,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,cAAc,CAAC,CAiGjF;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,cAAc,GAAG,MAAM,CAoCpE"}

package/dist/search.js

@@ -1,4 +1,6 @@
-import { generateEmbedding, checkMLXConnection } from './mlx.js';
+import { generateEmbedding as generateOllamaEmbedding, checkOllamaConnection } from './ollama.js';
+import { generateEmbedding as generateMLXEmbedding, checkMLXConnection } from './mlx.js';
+import { generateEmbedding as generateLMStudioEmbedding, checkLMStudioConnection } from './lmstudio.js';
 import { StorageManager } from './storage.js';
 import { cosineSimilarity, truncateToTokens } from './utils.js';
 /**
@@ -6,11 +8,29 @@ import { cosineSimilarity, truncateToTokens } from './utils.js';
  */
 export async function searchNotes(options) {
     const startTime = Date.now();
-    const { query, storagePath, topK = 10, model = 'mlx-community/Qwen3-Embedding-0.6B-4bit-DWQ', minScore = 0.0 } = options;
-    // Check MLX connection
-    const isConnected = await checkMLXConnection();
+    const { query, storagePath, topK = 10, backend = 'lmstudio', model, minScore = 0.0 } = options;
+    // Determine model and connection check based on backend
+    let effectiveModel = model;
+    let isConnected = false;
+    if (backend === 'ollama') {
+        isConnected = await checkOllamaConnection();
+        effectiveModel = effectiveModel || 'qwen3-embedding:0.6b';
+    }
+    else if (backend === 'lmstudio') {
+        isConnected = await checkLMStudioConnection();
+        effectiveModel = effectiveModel || 'text-embedding-qwen3-embedding-0.6b';
+    }
+    else {
+        isConnected = await checkMLXConnection();
+        effectiveModel = effectiveModel || 'mlx-community/Qwen3-Embedding-0.6B-4bit-DWQ';
+    }
+    const serverNames = {
+        ollama: 'Ollama',
+        lmstudio: 'LM Studio',
+        mlx: 'MLX'
+    };
     if (!isConnected) {
-        throw new Error('Cannot connect to MLX embedding server. Make sure it is running at http://localhost:28100');
+        throw new Error(`Cannot connect to embedding server. Make sure ${serverNames[backend] || serverNames.ollama} is running.`);
     }
     // Load storage
     const storage = new StorageManager(storagePath);
@@ -24,9 +44,13 @@ export async function searchNotes(options) {
             duration: (Date.now() - startTime) / 1000
         };
     }
-    // Generate query embedding
+    // Generate query embedding using the selected backend
     const truncatedQuery = truncateToTokens(query, 8000);
-    const queryEmbedding = await generateEmbedding(truncatedQuery, model);
+    const queryEmbedding = backend === 'ollama'
+        ? await generateOllamaEmbedding(truncatedQuery, effectiveModel)
+        : backend === 'lmstudio'
+            ? await generateLMStudioEmbedding(truncatedQuery, effectiveModel)
+            : await generateMLXEmbedding(truncatedQuery, effectiveModel);
     // Calculate similarities
     const results = [];
     for (const note of notes) {

package/dist/search.js.map

@@ -1 +1 @@
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package/dist/storage.d.ts

@@ -47,7 +47,7 @@ export declare class StorageManager {
     /**
      * Add or update a note embedding
      */
-    upsertNote(note: NoteEmbedding): Promise<void>;
+    upsertNote(note: NoteEmbedding, model?: string, dimensions?: number): Promise<void>;
     /**
      * Remove a note by path
      */

package/dist/storage.d.ts.map

@@ -1 +1 @@
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package/dist/storage.js

@@ -73,7 +73,7 @@ export class StorageManager {
     /**
      * Add or update a note embedding
      */
-    async upsertNote(note) {
+    async upsertNote(note, model, dimensions) {
         if (!this.data) {
             await this.initialize();
         }
@@ -87,6 +87,13 @@ export class StorageManager {
             this.data.notes.push(note);
         }
         this.data.indexed_at = new Date().toISOString();
+        // Update model metadata if provided
+        if (model !== undefined) {
+            this.data.model = model;
+        }
+        if (dimensions !== undefined) {
+            this.data.dimensions = dimensions;
+        }
     }
     /**
      * Remove a note by path

package/dist/storage.js.map

@@ -1 +1 @@
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