nmr-processing 9.7.8 → 9.8.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (583) hide show
  1. package/lib/apodization/compose.js +1 -1
  2. package/lib/apodization/compose.js.map +1 -1
  3. package/lib/assignment/get13CAssignments.d.ts +1 -1
  4. package/lib/assignment/get13CAssignments.js +3 -3
  5. package/lib/assignment/get13CAssignments.js.map +1 -1
  6. package/lib/assignment/get1HAssignments.d.ts +2 -4
  7. package/lib/assignment/get1HAssignments.js +3 -3
  8. package/lib/assignment/get1HAssignments.js.map +1 -1
  9. package/lib/assignment/getAssignments.d.ts +3 -5
  10. package/lib/assignment/getAssignments.js +5 -5
  11. package/lib/assignment/getAssignments.js.map +1 -1
  12. package/lib/assignment/nmrAssigment.d.ts +2 -2
  13. package/lib/assignment/utils/addSolution.d.ts +13 -0
  14. package/lib/assignment/utils/addSolution.js +29 -0
  15. package/lib/assignment/utils/addSolution.js.map +1 -0
  16. package/lib/assignment/utils/{getAssignment → generalAssignment}/buildAssignments.d.ts +13 -27
  17. package/lib/assignment/utils/{getAssignment → generalAssignment}/buildAssignments.js +15 -15
  18. package/lib/assignment/utils/generalAssignment/buildAssignments.js.map +1 -0
  19. package/lib/assignment/utils/{getAssignment → generalAssignment}/checkIDs.js +6 -6
  20. package/lib/assignment/utils/generalAssignment/checkIDs.js.map +1 -0
  21. package/lib/assignment/utils/{getAssignment → generalAssignment}/createMapPossibleAssignment.d.ts +3 -7
  22. package/lib/assignment/utils/{getAssignment → generalAssignment}/createMapPossibleAssignment.js +7 -7
  23. package/lib/assignment/utils/generalAssignment/createMapPossibleAssignment.js.map +1 -0
  24. package/lib/assignment/utils/{getAssignment → generalAssignment}/exploreTree.d.ts +1 -1
  25. package/lib/assignment/utils/{getAssignment → generalAssignment}/exploreTree.js +6 -7
  26. package/lib/assignment/utils/generalAssignment/exploreTree.js.map +1 -0
  27. package/lib/assignment/utils/{getAssignment → generalAssignment}/formatData.js +5 -5
  28. package/lib/assignment/utils/generalAssignment/formatData.js.map +1 -0
  29. package/lib/assignment/utils/generalAssignment/getIntegrationOfAttachedProtons.js.map +1 -0
  30. package/lib/assignment/utils/{getAssignment → generalAssignment}/getTargetsAndCorrelations.d.ts +2 -4
  31. package/lib/assignment/utils/{getAssignment → generalAssignment}/getTargetsAndCorrelations.js +1 -1
  32. package/lib/assignment/utils/generalAssignment/getTargetsAndCorrelations.js.map +1 -0
  33. package/lib/assignment/utils/{getAssignment → generalAssignment}/getWorkFlow.d.ts +1 -1
  34. package/lib/assignment/utils/generalAssignment/getWorkFlow.js.map +1 -0
  35. package/lib/assignment/utils/{getAssignment → generalAssignment}/groupCarbonTargetByIntegrationZone.js +8 -8
  36. package/lib/assignment/utils/generalAssignment/groupCarbonTargetByIntegrationZone.js.map +1 -0
  37. package/lib/assignment/utils/generalAssignment/isSpectraData1D.js.map +1 -0
  38. package/lib/assignment/utils/{getAssignment → generalAssignment}/partialScore.d.ts +1 -3
  39. package/lib/assignment/utils/{getAssignment → generalAssignment}/partialScore.js +20 -20
  40. package/lib/assignment/utils/generalAssignment/partialScore.js.map +1 -0
  41. package/lib/assignment/utils/generalAssignment/searchIndices.js.map +1 -0
  42. package/lib/assignment/utils/{buildAssignments.d.ts → oneDimensionalAssignment/buildAssignments.d.ts} +2 -4
  43. package/lib/assignment/utils/{buildAssignments.js → oneDimensionalAssignment/buildAssignments.js} +4 -4
  44. package/lib/assignment/utils/oneDimensionalAssignment/buildAssignments.js.map +1 -0
  45. package/lib/assignment/utils/{createMapPossibleAssignments.d.ts → oneDimensionalAssignment/createMapPossibleAssignments.d.ts} +3 -5
  46. package/lib/assignment/utils/{createMapPossibleAssignments.js → oneDimensionalAssignment/createMapPossibleAssignments.js} +4 -4
  47. package/lib/assignment/utils/oneDimensionalAssignment/createMapPossibleAssignments.js.map +1 -0
  48. package/lib/assignment/utils/{exploreTreeRec.d.ts → oneDimensionalAssignment/exploreTreeRec.d.ts} +1 -1
  49. package/lib/assignment/utils/{exploreTreeRec.js → oneDimensionalAssignment/exploreTreeRec.js} +7 -8
  50. package/lib/assignment/utils/oneDimensionalAssignment/exploreTreeRec.js.map +1 -0
  51. package/lib/assignment/utils/{partialScore.d.ts → oneDimensionalAssignment/partialScore.d.ts} +1 -1
  52. package/lib/assignment/utils/{partialScore.js → oneDimensionalAssignment/partialScore.js} +9 -9
  53. package/lib/assignment/utils/oneDimensionalAssignment/partialScore.js.map +1 -0
  54. package/lib/constants/SignalsKinds.d.ts +2 -2
  55. package/lib/constants/SignalsKinds.js.map +1 -1
  56. package/lib/constants/couplingValues.d.ts +1 -3
  57. package/lib/constants/couplingValues.js.map +1 -1
  58. package/lib/constants/degreeToRadians.d.ts +1 -0
  59. package/lib/constants/degreeToRadians.js +5 -0
  60. package/lib/constants/degreeToRadians.js.map +1 -0
  61. package/lib/constants/impurities.d.ts +1509 -6
  62. package/lib/constants/impurities.js +2 -1
  63. package/lib/constants/impurities.js.map +1 -1
  64. package/lib/databases/getDatabase.js +1 -1
  65. package/lib/databases/getDatabase.js.map +1 -1
  66. package/lib/datum/Filters.js +4 -0
  67. package/lib/datum/Filters.js.map +1 -1
  68. package/lib/datum/FiltersManager.d.ts +1 -1
  69. package/lib/datum/FiltersManager.js +2 -2
  70. package/lib/datum/FiltersManager.js.map +1 -1
  71. package/lib/datum/MatrixOptions.d.ts +2 -2
  72. package/lib/datum/data1d/Entry1D.d.ts +1 -1
  73. package/lib/datum/data1d/filter1d/baselineCorrection.js +4 -4
  74. package/lib/datum/data1d/filter1d/baselineCorrection.js.map +1 -1
  75. package/lib/datum/data1d/filter1d/digitalFilter.js +2 -2
  76. package/lib/datum/data1d/filter1d/digitalFilter.js.map +1 -1
  77. package/lib/datum/data1d/filter1d/fft.js +7 -7
  78. package/lib/datum/data1d/filter1d/fft.js.map +1 -1
  79. package/lib/datum/data1d/filter1d/phaseCorrection.js +3 -3
  80. package/lib/datum/data1d/filter1d/phaseCorrection.js.map +1 -1
  81. package/lib/datum/data1d/filter1d/signalProcessing.js +1 -1
  82. package/lib/datum/data1d/filter1d/signalProcessing.js.map +1 -1
  83. package/lib/datum/data1d/filter1d/utils/padDataToNextPowerOfTwo.js +2 -2
  84. package/lib/datum/data1d/filter1d/utils/padDataToNextPowerOfTwo.js.map +1 -1
  85. package/lib/datum/data1d/filter1d/zeroFilling.js +8 -8
  86. package/lib/datum/data1d/filter1d/zeroFilling.js.map +1 -1
  87. package/lib/datum/data1d/utils/mapPeaks.js +1 -1
  88. package/lib/datum/data1d/utils/mapPeaks.js.map +1 -1
  89. package/lib/datum/data2d/Entry2D.d.ts +1 -1
  90. package/lib/datum/data2d/filter2d/fftDimension1.d.ts +15 -0
  91. package/lib/datum/data2d/filter2d/fftDimension1.js +69 -0
  92. package/lib/datum/data2d/filter2d/fftDimension1.js.map +1 -0
  93. package/lib/datum/data2d/filter2d/fftDimension2.d.ts +15 -0
  94. package/lib/datum/data2d/filter2d/fftDimension2.js +78 -0
  95. package/lib/datum/data2d/filter2d/fftDimension2.js.map +1 -0
  96. package/lib/datum/data2d/utils/getShift.js +1 -1
  97. package/lib/datum/data2d/utils/getShift.js.map +1 -1
  98. package/lib/multiplicity/splitPatterns.js +1 -1
  99. package/lib/multiplicity/splitPatterns.js.map +1 -1
  100. package/lib/peaks/peaksFilterImpurities.js +7 -6
  101. package/lib/peaks/peaksFilterImpurities.js.map +1 -1
  102. package/lib/peaks/peaksToRanges.js +17 -17
  103. package/lib/peaks/peaksToRanges.js.map +1 -1
  104. package/lib/peaks/solventSuppression.js +11 -11
  105. package/lib/peaks/solventSuppression.js.map +1 -1
  106. package/lib/peaks/util/addMissingIDs.js.map +1 -1
  107. package/lib/peaks/util/determineRealTop.js +32 -32
  108. package/lib/peaks/util/determineRealTop.js.map +1 -1
  109. package/lib/peaks/util/getKernel.js +4 -4
  110. package/lib/peaks/util/getKernel.js.map +1 -1
  111. package/lib/peaks/util/peakOptimizer.js +17 -17
  112. package/lib/peaks/util/peakOptimizer.js.map +1 -1
  113. package/lib/peaks/util/setIDs.js.map +1 -1
  114. package/lib/prediction/dataStructure.d.ts +1 -3
  115. package/lib/prediction/predictAll.js +2 -1
  116. package/lib/prediction/predictAll.js.map +1 -1
  117. package/lib/prediction/predictCOSY.js +1 -1
  118. package/lib/prediction/predictCOSY.js.map +1 -1
  119. package/lib/prediction/predictCarbon.js +6 -6
  120. package/lib/prediction/predictCarbon.js.map +1 -1
  121. package/lib/prediction/predictHMBC.js +1 -1
  122. package/lib/prediction/predictHMBC.js.map +1 -1
  123. package/lib/prediction/predictHSQC.js +1 -1
  124. package/lib/prediction/predictHSQC.js.map +1 -1
  125. package/lib/prediction/predictProton.js +9 -9
  126. package/lib/prediction/predictProton.js.map +1 -1
  127. package/lib/prediction/utils/getFilteredIDiaIDs.js +3 -3
  128. package/lib/prediction/utils/getFilteredIDiaIDs.js.map +1 -1
  129. package/lib/prediction/utils/getNuclei.d.ts +1 -3
  130. package/lib/prediction/utils/getNuclei.js.map +1 -1
  131. package/lib/prediction/utils/predict2D.d.ts +1 -3
  132. package/lib/prediction/utils/predict2D.js +17 -17
  133. package/lib/prediction/utils/predict2D.js.map +1 -1
  134. package/lib/prediction/utils/queryByHOSE.js +1 -1
  135. package/lib/prediction/utils/queryByHOSE.js.map +1 -1
  136. package/lib/ranges/markSolventSignal.js +8 -8
  137. package/lib/ranges/markSolventSignal.js.map +1 -1
  138. package/lib/ranges/rangesToACS.js +6 -6
  139. package/lib/ranges/rangesToACS.js.map +1 -1
  140. package/lib/ranges/rangesToXY.js +6 -6
  141. package/lib/ranges/rangesToXY.js.map +1 -1
  142. package/lib/signal/signalJoinCouplings.js +9 -9
  143. package/lib/signal/signalJoinCouplings.js.map +1 -1
  144. package/lib/signal/signalMultiplicityPattern.js +2 -2
  145. package/lib/signal/signalMultiplicityPattern.js.map +1 -1
  146. package/lib/signals/addDummySignals.js +4 -4
  147. package/lib/signals/addDummySignals.js.map +1 -1
  148. package/lib/signals/hackSignalsToXY.js +1 -1
  149. package/lib/signals/hackSignalsToXY.js.map +1 -1
  150. package/lib/signals/optimization/getInternalSignals.js +6 -6
  151. package/lib/signals/optimization/getInternalSignals.js.map +1 -1
  152. package/lib/signals/optimization/getSumOfShapes.js +1 -1
  153. package/lib/signals/optimization/getSumOfShapes.js.map +1 -1
  154. package/lib/signals/optimizeSignals.js +3 -3
  155. package/lib/signals/optimizeSignals.js.map +1 -1
  156. package/lib/signals/signals2DToZ.js +3 -2
  157. package/lib/signals/signals2DToZ.js.map +1 -1
  158. package/lib/signals/signalsJoin.js +5 -5
  159. package/lib/signals/signalsJoin.js.map +1 -1
  160. package/lib/signals/signalsToFID.js +1 -1
  161. package/lib/signals/signalsToFID.js.map +1 -1
  162. package/lib/signals/signalsToRanges.js +3 -3
  163. package/lib/signals/signalsToRanges.js.map +1 -1
  164. package/lib/signals/signalsToXY.js +3 -3
  165. package/lib/signals/signalsToXY.js.map +1 -1
  166. package/lib/signals/simulation/signalsToSpinSystem.js +2 -2
  167. package/lib/signals/simulation/signalsToSpinSystem.js.map +1 -1
  168. package/lib/signals/simulation/simulate1D.js +2 -2
  169. package/lib/signals/simulation/simulate1D.js.map +1 -1
  170. package/lib/signals/simulation/simulateXYPeaks.js +15 -17
  171. package/lib/signals/simulation/simulateXYPeaks.js.map +1 -1
  172. package/lib/signals/simulation/splitSpinSystem.js +26 -23
  173. package/lib/signals/simulation/splitSpinSystem.js.map +1 -1
  174. package/lib/signals/utils/jAnalyzer.js +38 -38
  175. package/lib/signals/utils/jAnalyzer.js.map +1 -1
  176. package/lib/types/Integrals.d.ts +1 -1
  177. package/lib/types/Peaks/Peaks.d.ts +1 -1
  178. package/lib/types/Ranges/Ranges.d.ts +1 -1
  179. package/lib/types/Zones/Zone.d.ts +1 -1
  180. package/lib/types/Zones/Zones.d.ts +1 -1
  181. package/lib/utilities/getFrequency.js +1 -1
  182. package/lib/utilities/getFrequency.js.map +1 -1
  183. package/lib/utilities/resurrectRange.js +1 -1
  184. package/lib/utilities/resurrectRange.js.map +1 -1
  185. package/lib/xy/xyAutoPeaksPicking.js +3 -3
  186. package/lib/xy/xyAutoPeaksPicking.js.map +1 -1
  187. package/lib/xyz/quadrature.js +1 -19
  188. package/lib/xyz/quadrature.js.map +1 -1
  189. package/lib/xyz/util/fft2d/digitalFilter.js +3 -3
  190. package/lib/xyz/util/fft2d/digitalFilter.js.map +1 -1
  191. package/lib/xyz/util/fft2d/fftDirectDimension.d.ts +1 -1
  192. package/lib/xyz/util/fft2d/fftDirectDimension.js +3 -11
  193. package/lib/xyz/util/fft2d/fftDirectDimension.js.map +1 -1
  194. package/lib/xyz/util/fft2d/fftIndirectDimension.d.ts +2 -4
  195. package/lib/xyz/util/fft2d/fftIndirectDimension.js +104 -50
  196. package/lib/xyz/util/fft2d/fftIndirectDimension.js.map +1 -1
  197. package/lib/xyz/util/fft2d/removeDCOffset.js +1 -1
  198. package/lib/xyz/util/fft2d/removeDCOffset.js.map +1 -1
  199. package/lib/xyz/util/fft2d/zeroFilling.js +4 -6
  200. package/lib/xyz/util/fft2d/zeroFilling.js.map +1 -1
  201. package/lib/xyz/util/formatZone.js +3 -3
  202. package/lib/xyz/util/formatZone.js.map +1 -1
  203. package/lib/xyz/util/getMinMaxXY.d.ts +6 -0
  204. package/lib/xyz/util/getMinMaxXY.js +23 -0
  205. package/lib/xyz/util/getMinMaxXY.js.map +1 -0
  206. package/lib/xyz/util/padData.js +7 -7
  207. package/lib/xyz/util/padData.js.map +1 -1
  208. package/lib/xyz/util/phaseCorrection/applyOverImag.d.ts +24 -0
  209. package/lib/xyz/util/phaseCorrection/applyOverImag.js +27 -0
  210. package/lib/xyz/util/phaseCorrection/applyOverImag.js.map +1 -0
  211. package/lib/xyz/util/phaseCorrection/applyOverReal.d.ts +22 -0
  212. package/lib/xyz/util/phaseCorrection/applyOverReal.js +27 -0
  213. package/lib/xyz/util/phaseCorrection/applyOverReal.js.map +1 -0
  214. package/lib/xyz/util/phaseCorrection/checkNmrData2DFourQuad.d.ts +3 -0
  215. package/lib/xyz/util/phaseCorrection/checkNmrData2DFourQuad.js +10 -0
  216. package/lib/xyz/util/phaseCorrection/checkNmrData2DFourQuad.js.map +1 -0
  217. package/lib/xyz/util/phaseCorrection/checkNmrData2DTwoQuad.d.ts +3 -0
  218. package/lib/xyz/util/phaseCorrection/checkNmrData2DTwoQuad.js +10 -0
  219. package/lib/xyz/util/phaseCorrection/checkNmrData2DTwoQuad.js.map +1 -0
  220. package/lib/xyz/util/phaseCorrection/getZMinMax.d.ts +6 -0
  221. package/lib/xyz/util/phaseCorrection/getZMinMax.js +13 -0
  222. package/lib/xyz/util/phaseCorrection/getZMinMax.js.map +1 -0
  223. package/lib/xyz/xyzAutoSignalsPicking.js +19 -18
  224. package/lib/xyz/xyzAutoSignalsPicking.js.map +1 -1
  225. package/lib/xyz/xyzBidimensionalFFT.js +2 -19
  226. package/lib/xyz/xyzBidimensionalFFT.js.map +1 -1
  227. package/lib/xyz/xyzJResAnalyzer.js +21 -21
  228. package/lib/xyz/xyzJResAnalyzer.js.map +1 -1
  229. package/lib/xyz/xyzPhaseCorrectionDirectDimension.d.ts +16 -0
  230. package/lib/xyz/xyzPhaseCorrectionDirectDimension.js +30 -0
  231. package/lib/xyz/xyzPhaseCorrectionDirectDimension.js.map +1 -0
  232. package/lib/xyz/xyzPhaseCorrectionIndirectDimension.d.ts +25 -0
  233. package/lib/xyz/xyzPhaseCorrectionIndirectDimension.js +32 -0
  234. package/lib/xyz/xyzPhaseCorrectionIndirectDimension.js.map +1 -0
  235. package/lib-esm/apodization/compose.js +1 -1
  236. package/lib-esm/apodization/compose.js.map +1 -1
  237. package/lib-esm/assignment/get13CAssignments.js +3 -3
  238. package/lib-esm/assignment/get13CAssignments.js.map +1 -1
  239. package/lib-esm/assignment/get1HAssignments.js +3 -3
  240. package/lib-esm/assignment/get1HAssignments.js.map +1 -1
  241. package/lib-esm/assignment/getAssignments.js +5 -5
  242. package/lib-esm/assignment/getAssignments.js.map +1 -1
  243. package/lib-esm/assignment/utils/addSolution.js +25 -0
  244. package/lib-esm/assignment/utils/addSolution.js.map +1 -0
  245. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/buildAssignments.js +15 -15
  246. package/lib-esm/assignment/utils/generalAssignment/buildAssignments.js.map +1 -0
  247. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/checkIDs.js +6 -6
  248. package/lib-esm/assignment/utils/generalAssignment/checkIDs.js.map +1 -0
  249. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/createMapPossibleAssignment.js +7 -7
  250. package/lib-esm/assignment/utils/generalAssignment/createMapPossibleAssignment.js.map +1 -0
  251. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/exploreTree.js +6 -7
  252. package/lib-esm/assignment/utils/generalAssignment/exploreTree.js.map +1 -0
  253. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/formatData.js +5 -5
  254. package/lib-esm/assignment/utils/generalAssignment/formatData.js.map +1 -0
  255. package/lib-esm/assignment/utils/generalAssignment/getIntegrationOfAttachedProtons.js.map +1 -0
  256. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/getTargetsAndCorrelations.js +1 -1
  257. package/lib-esm/assignment/utils/generalAssignment/getTargetsAndCorrelations.js.map +1 -0
  258. package/lib-esm/assignment/utils/generalAssignment/getWorkFlow.js.map +1 -0
  259. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/groupCarbonTargetByIntegrationZone.js +8 -8
  260. package/lib-esm/assignment/utils/generalAssignment/groupCarbonTargetByIntegrationZone.js.map +1 -0
  261. package/lib-esm/assignment/utils/generalAssignment/isSpectraData1D.js.map +1 -0
  262. package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/partialScore.js +20 -20
  263. package/lib-esm/assignment/utils/generalAssignment/partialScore.js.map +1 -0
  264. package/lib-esm/assignment/utils/generalAssignment/searchIndices.js.map +1 -0
  265. package/lib-esm/assignment/utils/{buildAssignments.js → oneDimensionalAssignment/buildAssignments.js} +4 -4
  266. package/lib-esm/assignment/utils/oneDimensionalAssignment/buildAssignments.js.map +1 -0
  267. package/lib-esm/assignment/utils/{createMapPossibleAssignments.js → oneDimensionalAssignment/createMapPossibleAssignments.js} +4 -4
  268. package/lib-esm/assignment/utils/oneDimensionalAssignment/createMapPossibleAssignments.js.map +1 -0
  269. package/lib-esm/assignment/utils/{exploreTreeRec.js → oneDimensionalAssignment/exploreTreeRec.js} +7 -8
  270. package/lib-esm/assignment/utils/oneDimensionalAssignment/exploreTreeRec.js.map +1 -0
  271. package/lib-esm/assignment/utils/{partialScore.js → oneDimensionalAssignment/partialScore.js} +9 -9
  272. package/lib-esm/assignment/utils/oneDimensionalAssignment/partialScore.js.map +1 -0
  273. package/lib-esm/constants/SignalsKinds.js.map +1 -1
  274. package/lib-esm/constants/couplingValues.js.map +1 -1
  275. package/lib-esm/constants/degreeToRadians.js +2 -0
  276. package/lib-esm/constants/degreeToRadians.js.map +1 -0
  277. package/lib-esm/constants/impurities.js +2 -1
  278. package/lib-esm/constants/impurities.js.map +1 -1
  279. package/lib-esm/databases/getDatabase.js +1 -1
  280. package/lib-esm/databases/getDatabase.js.map +1 -1
  281. package/lib-esm/datum/Filters.js +4 -0
  282. package/lib-esm/datum/Filters.js.map +1 -1
  283. package/lib-esm/datum/FiltersManager.js +2 -2
  284. package/lib-esm/datum/FiltersManager.js.map +1 -1
  285. package/lib-esm/datum/data1d/filter1d/baselineCorrection.js +4 -4
  286. package/lib-esm/datum/data1d/filter1d/baselineCorrection.js.map +1 -1
  287. package/lib-esm/datum/data1d/filter1d/digitalFilter.js +2 -2
  288. package/lib-esm/datum/data1d/filter1d/digitalFilter.js.map +1 -1
  289. package/lib-esm/datum/data1d/filter1d/fft.js +7 -7
  290. package/lib-esm/datum/data1d/filter1d/fft.js.map +1 -1
  291. package/lib-esm/datum/data1d/filter1d/phaseCorrection.js +3 -3
  292. package/lib-esm/datum/data1d/filter1d/phaseCorrection.js.map +1 -1
  293. package/lib-esm/datum/data1d/filter1d/signalProcessing.js +1 -1
  294. package/lib-esm/datum/data1d/filter1d/signalProcessing.js.map +1 -1
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  364. package/lib-esm/signals/signalsJoin.js +5 -5
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  366. package/lib-esm/signals/signalsToFID.js +1 -1
  367. package/lib-esm/signals/signalsToFID.js.map +1 -1
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  369. package/lib-esm/signals/signalsToRanges.js.map +1 -1
  370. package/lib-esm/signals/signalsToXY.js +3 -3
  371. package/lib-esm/signals/signalsToXY.js.map +1 -1
  372. package/lib-esm/signals/simulation/signalsToSpinSystem.js +2 -2
  373. package/lib-esm/signals/simulation/signalsToSpinSystem.js.map +1 -1
  374. package/lib-esm/signals/simulation/simulate1D.js +2 -2
  375. package/lib-esm/signals/simulation/simulate1D.js.map +1 -1
  376. package/lib-esm/signals/simulation/simulateXYPeaks.js +15 -17
  377. package/lib-esm/signals/simulation/simulateXYPeaks.js.map +1 -1
  378. package/lib-esm/signals/simulation/splitSpinSystem.js +26 -23
  379. package/lib-esm/signals/simulation/splitSpinSystem.js.map +1 -1
  380. package/lib-esm/signals/utils/jAnalyzer.js +38 -38
  381. package/lib-esm/signals/utils/jAnalyzer.js.map +1 -1
  382. package/lib-esm/utilities/getFrequency.js +1 -1
  383. package/lib-esm/utilities/getFrequency.js.map +1 -1
  384. package/lib-esm/utilities/resurrectRange.js +1 -1
  385. package/lib-esm/utilities/resurrectRange.js.map +1 -1
  386. package/lib-esm/xy/xyAutoPeaksPicking.js +3 -3
  387. package/lib-esm/xy/xyAutoPeaksPicking.js.map +1 -1
  388. package/lib-esm/xyz/quadrature.js +2 -20
  389. package/lib-esm/xyz/quadrature.js.map +1 -1
  390. package/lib-esm/xyz/util/fft2d/digitalFilter.js +3 -3
  391. package/lib-esm/xyz/util/fft2d/digitalFilter.js.map +1 -1
  392. package/lib-esm/xyz/util/fft2d/fftDirectDimension.js +4 -12
  393. package/lib-esm/xyz/util/fft2d/fftDirectDimension.js.map +1 -1
  394. package/lib-esm/xyz/util/fft2d/fftIndirectDimension.js +104 -50
  395. package/lib-esm/xyz/util/fft2d/fftIndirectDimension.js.map +1 -1
  396. package/lib-esm/xyz/util/fft2d/removeDCOffset.js +1 -1
  397. package/lib-esm/xyz/util/fft2d/removeDCOffset.js.map +1 -1
  398. package/lib-esm/xyz/util/fft2d/zeroFilling.js +4 -6
  399. package/lib-esm/xyz/util/fft2d/zeroFilling.js.map +1 -1
  400. package/lib-esm/xyz/util/formatZone.js +3 -3
  401. package/lib-esm/xyz/util/formatZone.js.map +1 -1
  402. package/lib-esm/xyz/util/getMinMaxXY.js +19 -0
  403. package/lib-esm/xyz/util/getMinMaxXY.js.map +1 -0
  404. package/lib-esm/xyz/util/padData.js +7 -7
  405. package/lib-esm/xyz/util/padData.js.map +1 -1
  406. package/lib-esm/xyz/util/phaseCorrection/applyOverImag.js +20 -0
  407. package/lib-esm/xyz/util/phaseCorrection/applyOverImag.js.map +1 -0
  408. package/lib-esm/xyz/util/phaseCorrection/applyOverReal.js +20 -0
  409. package/lib-esm/xyz/util/phaseCorrection/applyOverReal.js.map +1 -0
  410. package/lib-esm/xyz/util/phaseCorrection/checkNmrData2DFourQuad.js +6 -0
  411. package/lib-esm/xyz/util/phaseCorrection/checkNmrData2DFourQuad.js.map +1 -0
  412. package/lib-esm/xyz/util/phaseCorrection/checkNmrData2DTwoQuad.js +6 -0
  413. package/lib-esm/xyz/util/phaseCorrection/checkNmrData2DTwoQuad.js.map +1 -0
  414. package/lib-esm/xyz/util/phaseCorrection/getZMinMax.js +9 -0
  415. package/lib-esm/xyz/util/phaseCorrection/getZMinMax.js.map +1 -0
  416. package/lib-esm/xyz/xyzAutoSignalsPicking.js +19 -18
  417. package/lib-esm/xyz/xyzAutoSignalsPicking.js.map +1 -1
  418. package/lib-esm/xyz/xyzBidimensionalFFT.js +1 -18
  419. package/lib-esm/xyz/xyzBidimensionalFFT.js.map +1 -1
  420. package/lib-esm/xyz/xyzJResAnalyzer.js +21 -21
  421. package/lib-esm/xyz/xyzJResAnalyzer.js.map +1 -1
  422. package/lib-esm/xyz/xyzPhaseCorrectionDirectDimension.js +26 -0
  423. package/lib-esm/xyz/xyzPhaseCorrectionDirectDimension.js.map +1 -0
  424. package/lib-esm/xyz/xyzPhaseCorrectionIndirectDimension.js +28 -0
  425. package/lib-esm/xyz/xyzPhaseCorrectionIndirectDimension.js.map +1 -0
  426. package/package.json +4 -4
  427. package/src/apodization/compose.ts +1 -1
  428. package/src/assignment/get13CAssignments.ts +6 -3
  429. package/src/assignment/get1HAssignments.ts +7 -6
  430. package/src/assignment/getAssignments.ts +7 -7
  431. package/src/assignment/nmrAssigment.ts +2 -2
  432. package/src/assignment/utils/addSolution.ts +45 -0
  433. package/src/assignment/utils/{getAssignment → generalAssignment}/buildAssignments.ts +29 -36
  434. package/src/assignment/utils/{getAssignment → generalAssignment}/checkIDs.ts +6 -6
  435. package/src/assignment/utils/{getAssignment → generalAssignment}/createMapPossibleAssignment.ts +10 -14
  436. package/src/assignment/utils/{getAssignment → generalAssignment}/exploreTree.ts +7 -8
  437. package/src/assignment/utils/{getAssignment → generalAssignment}/formatData.ts +5 -5
  438. package/src/assignment/utils/{getAssignment → generalAssignment}/getTargetsAndCorrelations.ts +3 -5
  439. package/src/assignment/utils/{getAssignment → generalAssignment}/getWorkFlow.ts +2 -5
  440. package/src/assignment/utils/{getAssignment → generalAssignment}/groupCarbonTargetByIntegrationZone.ts +8 -8
  441. package/src/assignment/utils/{getAssignment → generalAssignment}/partialScore.ts +25 -29
  442. package/src/assignment/utils/{buildAssignments.ts → oneDimensionalAssignment/buildAssignments.ts} +6 -8
  443. package/src/assignment/utils/{createMapPossibleAssignments.ts → oneDimensionalAssignment/createMapPossibleAssignments.ts} +9 -9
  444. package/src/assignment/utils/{exploreTreeRec.ts → oneDimensionalAssignment/exploreTreeRec.ts} +8 -9
  445. package/src/assignment/utils/{partialScore.ts → oneDimensionalAssignment/partialScore.ts} +10 -12
  446. package/src/constants/SignalsKinds.ts +1 -1
  447. package/src/constants/couplingValues.ts +1 -1
  448. package/src/constants/degreeToRadians.ts +1 -0
  449. package/src/constants/impurities.ts +14 -15
  450. package/src/databases/getDatabase.ts +1 -1
  451. package/src/datum/Filters.ts +4 -0
  452. package/src/datum/FiltersManager.ts +3 -3
  453. package/src/datum/MatrixOptions.ts +1 -1
  454. package/src/datum/data1d/Entry1D.ts +1 -1
  455. package/src/datum/data1d/filter1d/baselineCorrection.ts +4 -4
  456. package/src/datum/data1d/filter1d/digitalFilter.ts +2 -2
  457. package/src/datum/data1d/filter1d/fft.ts +7 -7
  458. package/src/datum/data1d/filter1d/phaseCorrection.ts +3 -3
  459. package/src/datum/data1d/filter1d/signalProcessing.ts +1 -1
  460. package/src/datum/data1d/filter1d/utils/padDataToNextPowerOfTwo.ts +2 -2
  461. package/src/datum/data1d/filter1d/zeroFilling.ts +10 -9
  462. package/src/datum/data1d/utils/mapPeaks.ts +1 -1
  463. package/src/datum/data2d/Entry2D.ts +1 -1
  464. package/src/datum/data2d/filter2d/fftDimension1.ts +93 -0
  465. package/src/datum/data2d/filter2d/fftDimension2.ts +94 -0
  466. package/src/datum/data2d/utils/getShift.ts +1 -1
  467. package/src/ml-tree-set.d.ts +1 -1
  468. package/src/multiplicity/splitPatterns.ts +1 -1
  469. package/src/peaks/peaksFilterImpurities.ts +7 -6
  470. package/src/peaks/peaksToRanges.ts +19 -18
  471. package/src/peaks/solventSuppression.ts +11 -11
  472. package/src/peaks/util/addMissingIDs.ts +1 -1
  473. package/src/peaks/util/determineRealTop.ts +32 -32
  474. package/src/peaks/util/getKernel.ts +4 -4
  475. package/src/peaks/util/peakOptimizer.ts +17 -17
  476. package/src/peaks/util/setIDs.ts +6 -4
  477. package/src/prediction/dataStructure.ts +1 -3
  478. package/src/prediction/predictAll.ts +3 -2
  479. package/src/prediction/predictCOSY.ts +1 -1
  480. package/src/prediction/predictCarbon.ts +6 -6
  481. package/src/prediction/predictHMBC.ts +1 -1
  482. package/src/prediction/predictHSQC.ts +1 -1
  483. package/src/prediction/predictProton.ts +9 -9
  484. package/src/prediction/utils/getFilteredIDiaIDs.ts +3 -3
  485. package/src/prediction/utils/getNuclei.ts +2 -2
  486. package/src/prediction/utils/predict2D.ts +21 -25
  487. package/src/prediction/utils/queryByHOSE.ts +1 -1
  488. package/src/ranges/markSolventSignal.ts +8 -8
  489. package/src/ranges/rangesToACS.ts +6 -6
  490. package/src/ranges/rangesToXY.ts +6 -6
  491. package/src/signal/signalJoinCouplings.ts +9 -9
  492. package/src/signal/signalMultiplicityPattern.ts +2 -2
  493. package/src/signals/addDummySignals.ts +4 -4
  494. package/src/signals/hackSignalsToXY.ts +1 -1
  495. package/src/signals/optimization/getInternalSignals.ts +6 -6
  496. package/src/signals/optimization/getSumOfShapes.ts +1 -1
  497. package/src/signals/optimizeSignals.ts +3 -3
  498. package/src/signals/signals2DToZ.ts +4 -8
  499. package/src/signals/signalsJoin.ts +5 -5
  500. package/src/signals/signalsToFID.ts +1 -1
  501. package/src/signals/signalsToRanges.ts +3 -3
  502. package/src/signals/signalsToXY.ts +3 -3
  503. package/src/signals/simulation/signalsToSpinSystem.ts +3 -5
  504. package/src/signals/simulation/simulate1D.ts +2 -2
  505. package/src/signals/simulation/simulateXYPeaks.ts +16 -17
  506. package/src/signals/simulation/splitSpinSystem.ts +28 -25
  507. package/src/signals/utils/jAnalyzer.ts +38 -38
  508. package/src/types/Integrals.ts +1 -1
  509. package/src/types/Peaks/Peaks.ts +1 -1
  510. package/src/types/Ranges/Ranges.ts +1 -1
  511. package/src/types/Zones/Zone.ts +1 -1
  512. package/src/types/Zones/Zones.ts +1 -1
  513. package/src/utilities/getFrequency.ts +1 -1
  514. package/src/utilities/resurrectRange.ts +1 -1
  515. package/src/xy/xyAutoPeaksPicking.ts +3 -3
  516. package/src/xyz/quadrature.ts +2 -27
  517. package/src/xyz/util/fft2d/digitalFilter.ts +3 -3
  518. package/src/xyz/util/fft2d/fftDirectDimension.ts +4 -23
  519. package/src/xyz/util/fft2d/fftIndirectDimension.ts +123 -73
  520. package/src/xyz/util/fft2d/removeDCOffset.ts +1 -1
  521. package/src/xyz/util/fft2d/zeroFilling.ts +5 -6
  522. package/src/xyz/util/formatZone.ts +3 -3
  523. package/src/xyz/util/getMinMaxXY.ts +19 -0
  524. package/src/xyz/util/padData.ts +7 -7
  525. package/src/xyz/util/phaseCorrection/applyOverImag.ts +29 -0
  526. package/src/xyz/util/phaseCorrection/applyOverReal.ts +29 -0
  527. package/src/xyz/util/phaseCorrection/checkNmrData2DFourQuad.ts +12 -0
  528. package/src/xyz/util/phaseCorrection/checkNmrData2DTwoQuad.ts +11 -0
  529. package/src/xyz/util/phaseCorrection/getZMinMax.ts +10 -0
  530. package/src/xyz/xyzAutoSignalsPicking.ts +20 -19
  531. package/src/xyz/xyzBidimensionalFFT.ts +1 -20
  532. package/src/xyz/xyzJResAnalyzer.ts +21 -21
  533. package/src/xyz/xyzPhaseCorrectionDirectDimension.ts +52 -0
  534. package/src/xyz/xyzPhaseCorrectionIndirectDimension.ts +45 -0
  535. package/lib/assignment/utils/buildAssignments.js.map +0 -1
  536. package/lib/assignment/utils/createMapPossibleAssignments.js.map +0 -1
  537. package/lib/assignment/utils/exploreTreeRec.js.map +0 -1
  538. package/lib/assignment/utils/getAssignment/buildAssignments.js.map +0 -1
  539. package/lib/assignment/utils/getAssignment/checkIDs.js.map +0 -1
  540. package/lib/assignment/utils/getAssignment/createMapPossibleAssignment.js.map +0 -1
  541. package/lib/assignment/utils/getAssignment/exploreTree.js.map +0 -1
  542. package/lib/assignment/utils/getAssignment/formatData.js.map +0 -1
  543. package/lib/assignment/utils/getAssignment/getIntegrationOfAttachedProtons.js.map +0 -1
  544. package/lib/assignment/utils/getAssignment/getTargetsAndCorrelations.js.map +0 -1
  545. package/lib/assignment/utils/getAssignment/getWorkFlow.js.map +0 -1
  546. package/lib/assignment/utils/getAssignment/groupCarbonTargetByIntegrationZone.js.map +0 -1
  547. package/lib/assignment/utils/getAssignment/isSpectraData1D.js.map +0 -1
  548. package/lib/assignment/utils/getAssignment/partialScore.js.map +0 -1
  549. package/lib/assignment/utils/getAssignment/searchIndices.js.map +0 -1
  550. package/lib/assignment/utils/partialScore.js.map +0 -1
  551. package/lib-esm/assignment/utils/buildAssignments.js.map +0 -1
  552. package/lib-esm/assignment/utils/createMapPossibleAssignments.js.map +0 -1
  553. package/lib-esm/assignment/utils/exploreTreeRec.js.map +0 -1
  554. package/lib-esm/assignment/utils/getAssignment/buildAssignments.js.map +0 -1
  555. package/lib-esm/assignment/utils/getAssignment/checkIDs.js.map +0 -1
  556. package/lib-esm/assignment/utils/getAssignment/createMapPossibleAssignment.js.map +0 -1
  557. package/lib-esm/assignment/utils/getAssignment/exploreTree.js.map +0 -1
  558. package/lib-esm/assignment/utils/getAssignment/formatData.js.map +0 -1
  559. package/lib-esm/assignment/utils/getAssignment/getIntegrationOfAttachedProtons.js.map +0 -1
  560. package/lib-esm/assignment/utils/getAssignment/getTargetsAndCorrelations.js.map +0 -1
  561. package/lib-esm/assignment/utils/getAssignment/getWorkFlow.js.map +0 -1
  562. package/lib-esm/assignment/utils/getAssignment/groupCarbonTargetByIntegrationZone.js.map +0 -1
  563. package/lib-esm/assignment/utils/getAssignment/isSpectraData1D.js.map +0 -1
  564. package/lib-esm/assignment/utils/getAssignment/partialScore.js.map +0 -1
  565. package/lib-esm/assignment/utils/getAssignment/searchIndices.js.map +0 -1
  566. package/lib-esm/assignment/utils/partialScore.js.map +0 -1
  567. /package/lib/assignment/utils/{getAssignment → generalAssignment}/checkIDs.d.ts +0 -0
  568. /package/lib/assignment/utils/{getAssignment → generalAssignment}/formatData.d.ts +0 -0
  569. /package/lib/assignment/utils/{getAssignment → generalAssignment}/getIntegrationOfAttachedProtons.d.ts +0 -0
  570. /package/lib/assignment/utils/{getAssignment → generalAssignment}/getIntegrationOfAttachedProtons.js +0 -0
  571. /package/lib/assignment/utils/{getAssignment → generalAssignment}/getWorkFlow.js +0 -0
  572. /package/lib/assignment/utils/{getAssignment → generalAssignment}/groupCarbonTargetByIntegrationZone.d.ts +0 -0
  573. /package/lib/assignment/utils/{getAssignment → generalAssignment}/isSpectraData1D.d.ts +0 -0
  574. /package/lib/assignment/utils/{getAssignment → generalAssignment}/isSpectraData1D.js +0 -0
  575. /package/lib/assignment/utils/{getAssignment → generalAssignment}/searchIndices.d.ts +0 -0
  576. /package/lib/assignment/utils/{getAssignment → generalAssignment}/searchIndices.js +0 -0
  577. /package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/getIntegrationOfAttachedProtons.js +0 -0
  578. /package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/getWorkFlow.js +0 -0
  579. /package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/isSpectraData1D.js +0 -0
  580. /package/lib-esm/assignment/utils/{getAssignment → generalAssignment}/searchIndices.js +0 -0
  581. /package/src/assignment/utils/{getAssignment → generalAssignment}/getIntegrationOfAttachedProtons.ts +0 -0
  582. /package/src/assignment/utils/{getAssignment → generalAssignment}/isSpectraData1D.ts +0 -0
  583. /package/src/assignment/utils/{getAssignment → generalAssignment}/searchIndices.ts +0 -0
package/lib/signals/simulation/splitSpinSystem.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ 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package/lib/signals/utils/jAnalyzer.js CHANGED
@@ -5,10 +5,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
5
5
  * A two-stage approach to automatic determination of 1H NMR coupling constants
6
6
  */
7
7
  const patterns = ['s', 'd', 't', 'q', 'quint', 'h', 'sept', 'o', 'n'];
8
- let symRatio = 1.5;
9
- let maxErrorIter1 = 2.5; // Hz
10
- let maxErrorIter2 = 1; // Hz
11
- let jAxisKeys = { jAxis: 'x', intensity: 'intensity' };
8
+ const symRatio = 1.5;
9
+ const maxErrorIter1 = 2.5; // Hz
10
+ const maxErrorIter2 = 1; // Hz
11
+ const jAxisKeys = { jAxis: 'x', intensity: 'intensity' };
12
12
  function checkSignalForCompilePattern(signal) {
13
13
  if (!('symRank' in signal)) {
14
14
  throw new Error('Internal error, symRank was not calculated');
@@ -25,7 +25,7 @@ exports.default = {
25
25
  * @private
26
26
  */
27
27
  compilePattern: (inputSignal, options = {}) => {
28
- let { jAxisKey = jAxisKeys } = options;
28
+ const { jAxisKey = jAxisKeys } = options;
29
29
  // checkForPeaks(inputSignal);
30
30
  // const signal = JSON.parse(JSON.stringify(inputSignal));
31
31
  // 1.1 symmetrize
@@ -49,7 +49,7 @@ exports.default = {
49
49
  // Loop over the possible number of coupling contributing to the multiplet
50
50
  for (let n = 0; n < 9; n++) {
51
51
  // 1.2 Normalize. It makes a deep copy of the peaks before to modify them.
52
- let peaks = normalize(signal, n);
52
+ const peaks = normalize(signal, n);
53
53
  let validPattern = false; // It will change to true, when we find the good patter
54
54
  // Lets check if the signal could be a singulet.
55
55
  if (peaks.length === 1 && n === 0) {
@@ -59,7 +59,7 @@ exports.default = {
59
59
  continue;
60
60
  }
61
61
  // 1.3 Establish a range for the Heights Hi [peaks.intensity*0.85,peaks.intensity*1.15];
62
- let ranges = getRanges(peaks);
62
+ const ranges = getRanges(peaks);
63
63
  n2 = Math.pow(2, n);
64
64
  // 1.4 Find a combination of integer heights Hi, one from each Si, that sums to 2^n.
65
65
  let heights = null;
@@ -69,7 +69,7 @@ exports.default = {
69
69
  counter < 400) {
70
70
  // 2.1 Number the components of the multiplet consecutively from 1 to 2n,
71
71
  // starting at peak 1
72
- let numbering = new Array(heights.length);
72
+ const numbering = new Array(heights.length);
73
73
  k = 1;
74
74
  for (let i = 0; i < heights.length; i++) {
75
75
  numbering[i] = new Array(heights[i]);
@@ -120,7 +120,7 @@ exports.default = {
120
120
  }
121
121
  }
122
122
  // Calculate the ideal patter by using the extracted j-couplings
123
- let pattern = idealPattern(jCouplings);
123
+ const pattern = idealPattern(jCouplings);
124
124
  // Compare the ideal pattern with the proposed intensities.
125
125
  // All the intensities have to match to accept the multiplet
126
126
  validPattern = true;
@@ -137,7 +137,7 @@ exports.default = {
137
137
  }
138
138
  }
139
139
  // Before to return, change the units of peaksComp from Hz to PPM again
140
- for (let peakComp of signal.peaksComp) {
140
+ for (const peakComp of signal.peaksComp) {
141
141
  peakComp.x /= signal.observe;
142
142
  peakComp.width *= signal.observe;
143
143
  }
@@ -152,8 +152,8 @@ exports.default = {
152
152
  */
153
153
  function updateSignal(signal, jCouplings) {
154
154
  // Update the limits of the signal
155
- let peaks = signal.peaksComp; // Always in Hz
156
- let nbPeaks = peaks.length;
155
+ const peaks = signal.peaksComp; // Always in Hz
156
+ const nbPeaks = peaks.length;
157
157
  signal.startX = peaks[0].x / signal.observe - peaks[0].width;
158
158
  signal.stopX =
159
159
  peaks[nbPeaks - 1].x / signal.observe + peaks[nbPeaks - 1].width;
@@ -173,10 +173,10 @@ function updateSignal(signal, jCouplings) {
173
173
  * @private
174
174
  */
175
175
  function abstractPattern(signal, jCouplings) {
176
- let tol = 0.05;
176
+ const tol = 0.05;
177
177
  let pattern = '';
178
178
  let cont = 1;
179
- let newNmrJs = [];
179
+ const newNmrJs = [];
180
180
  if (jCouplings && jCouplings.length > 0) {
181
181
  jCouplings.sort((a, b) => {
182
182
  return b - a;
@@ -194,7 +194,7 @@ function abstractPattern(signal, jCouplings) {
194
194
  cont = 1;
195
195
  }
196
196
  }
197
- let index = jCouplings.length - 1;
197
+ const index = jCouplings.length - 1;
198
198
  newNmrJs.push({
199
199
  coupling: Math.abs(jCouplings[index]),
200
200
  multiplicity: patterns[cont],
@@ -218,8 +218,8 @@ function abstractPattern(signal, jCouplings) {
218
218
  * @private
219
219
  */
220
220
  function idealPattern(jCouplings) {
221
- let hsum = Math.pow(2, jCouplings.length);
222
- let pattern = [{ x: 0, intensity: hsum }];
221
+ const hsum = Math.pow(2, jCouplings.length);
222
+ const pattern = [{ x: 0, intensity: hsum }];
223
223
  // To split the initial height
224
224
  for (const jc of jCouplings) {
225
225
  for (let j = pattern.length - 1; j >= 0; j--) {
@@ -251,8 +251,8 @@ function idealPattern(jCouplings) {
251
251
  * @private
252
252
  */
253
253
  function getNextCombination(ranges, value) {
254
- let half = Math.ceil(ranges.values.length * 0.5);
255
- let lng = ranges.values.length;
254
+ const half = Math.ceil(ranges.values.length * 0.5);
255
+ const lng = ranges.values.length;
256
256
  let sum = 0;
257
257
  let ok;
258
258
  while (sum !== value) {
@@ -289,7 +289,7 @@ function getNextCombination(ranges, value) {
289
289
  }
290
290
  // If the sum is equal to the expected value, fill the array to return
291
291
  if (sum === value) {
292
- let heights = new Array(lng);
292
+ const heights = new Array(lng);
293
293
  for (let i = 0; i < half; i++) {
294
294
  heights[i] = ranges.values[i][ranges.currentIndex[i]];
295
295
  heights[lng - i - 1] = ranges.values[i][ranges.currentIndex[i]];
@@ -306,8 +306,8 @@ function getNextCombination(ranges, value) {
306
306
  * @private
307
307
  */
308
308
  function getRanges(peaks) {
309
- let ranges = new Array(peaks.length);
310
- let currentIndex = new Array(peaks.length);
309
+ const ranges = new Array(peaks.length);
310
+ const currentIndex = new Array(peaks.length);
311
311
  let min, max;
312
312
  ranges[0] = [1];
313
313
  ranges[peaks.length - 1] = [1];
@@ -334,18 +334,18 @@ function getRanges(peaks) {
334
334
  * @private
335
335
  */
336
336
  function symmetrizeChoiseBest(signal, options) {
337
- let { maxError, iteration, jAxisKey = jAxisKeys } = options;
337
+ const { maxError, iteration, jAxisKey = jAxisKeys } = options;
338
338
  //make a clone of signal
339
- let newSignal1 = symmetrize(signal, maxError, iteration, jAxisKey);
339
+ const newSignal1 = symmetrize(signal, maxError, iteration, jAxisKey);
340
340
  if (!newSignal1.peaksComp) {
341
341
  throw new Error('internal peaksComp was not created');
342
342
  }
343
- let tmpPeaks = newSignal1.peaksComp;
344
- let tmpMask = newSignal1.mask;
345
- let cs = signal.delta;
343
+ const tmpPeaks = newSignal1.peaksComp;
344
+ const tmpMask = newSignal1.mask;
345
+ const cs = signal.delta;
346
346
  signal.delta =
347
347
  (signal.peaks[0].x + signal.peaks[signal.peaks.length - 1].x) / 2;
348
- let newSignal2 = symmetrize(signal, maxError, iteration, jAxisKey);
348
+ const newSignal2 = symmetrize(signal, maxError, iteration, jAxisKey);
349
349
  if (!newSignal2.peaksComp) {
350
350
  throw new Error('internal peaksComp was not created');
351
351
  }
@@ -367,14 +367,14 @@ function symmetrizeChoiseBest(signal, options) {
367
367
  * @private
368
368
  */
369
369
  function symmetrize(signalInput, maxError, iteration, key) {
370
- let { jAxis, intensity } = key;
370
+ const { jAxis, intensity } = key;
371
371
  const newSignal = JSON.parse(JSON.stringify(signalInput));
372
372
  // Before to symmetrize we need to keep only the peaks that possibly conforms the multiplete
373
373
  let max, min, avg, ratio, avgWidth;
374
- let peaks = new Array(newSignal.peaks.length);
374
+ const peaks = new Array(newSignal.peaks.length);
375
375
  // Make a deep copy of the peaks and convert PPM ot HZ
376
376
  for (let i = 0; i < peaks.length; i++) {
377
- let peak = newSignal.peaks[i];
377
+ const peak = newSignal.peaks[i];
378
378
  peaks[i] = {
379
379
  x: peak[jAxis] * newSignal.observe,
380
380
  intensity: peak[intensity],
@@ -395,8 +395,8 @@ function symmetrize(signalInput, maxError, iteration, key) {
395
395
  }
396
396
  }
397
397
  newSignal.peaksComp = peaks;
398
- let nbPeaks = peaks.length;
399
- let mask = new Array(nbPeaks);
398
+ const nbPeaks = peaks.length;
399
+ const mask = new Array(nbPeaks);
400
400
  newSignal.mask = mask;
401
401
  let left = 0;
402
402
  let right = peaks.length - 1;
@@ -434,8 +434,8 @@ function symmetrize(signalInput, maxError, iteration, key) {
434
434
  }
435
435
  }
436
436
  else {
437
- let diffL = Math.abs(peaks[left].x - cs);
438
- let diffR = Math.abs(peaks[right].x - cs);
437
+ const diffL = Math.abs(peaks[left].x - cs);
438
+ const diffR = Math.abs(peaks[right].x - cs);
439
439
  if (Math.abs(diffL - diffR) < maxError) {
440
440
  avg = Math.min(peaks[left].intensity, peaks[right].intensity);
441
441
  avgWidth = Math.min(peaks[left].width, peaks[right].width);
@@ -548,10 +548,10 @@ function error(value) {
548
548
  */
549
549
  function normalize(signal, n) {
550
550
  // Perhaps this is slow
551
- let peaks = JSON.parse(JSON.stringify(signal.peaksComp));
551
+ const peaks = JSON.parse(JSON.stringify(signal.peaksComp));
552
552
  let norm = 0;
553
553
  let norm2 = 0;
554
- for (let peak of peaks) {
554
+ for (const peak of peaks) {
555
555
  norm += peak.intensity;
556
556
  }
557
557
  norm = Math.pow(2, n) / norm;
@@ -598,7 +598,7 @@ function chemicalShift(peaks, mask = []) {
598
598
  }
599
599
  }
600
600
  else {
601
- for (let peak of peaks) {
601
+ for (const peak of peaks) {
602
602
  area = getArea(peak);
603
603
  sum += area;
604
604
  cs += area * peak.x;
package/lib/signals/utils/jAnalyzer.js.map CHANGED
@@ -1 +1 @@
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package/lib/types/Integrals.d.ts CHANGED
@@ -1,6 +1,6 @@
1
1
  import { Integral } from './Integral';
2
2
  import { SumOptions as Options } from './Options/SumOptions';
3
3
  export interface Integrals {
4
- values: Array<Integral>;
4
+ values: Integral[];
5
5
  options: Options;
6
6
  }
package/lib/types/Peaks/Peaks.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import { Peak1D } from './Peak1D';
2
2
  export interface Peaks {
3
- values: Array<Peak1D>;
3
+ values: Peak1D[];
4
4
  options: any;
5
5
  }
package/lib/types/Ranges/Ranges.d.ts CHANGED
@@ -2,7 +2,7 @@ import { NMRRange } from '../..';
2
2
  import { SumOptions as Options } from '../Options/SumOptions';
3
3
  import { Signal1D } from '../Signals/Signal1D';
4
4
  export interface Ranges {
5
- values: Array<Range>;
5
+ values: Range[];
6
6
  options: Options;
7
7
  }
8
8
  export interface Range extends Omit<NMRRange, 'signals' | 'id'> {
package/lib/types/Zones/Zone.d.ts CHANGED
@@ -8,7 +8,7 @@ export interface Zone {
8
8
  id: string;
9
9
  x: ZoneAxis;
10
10
  y: ZoneAxis;
11
- signals: Array<Signal2D>;
11
+ signals: Signal2D[];
12
12
  kind?: string;
13
13
  }
14
14
  export {};
package/lib/types/Zones/Zones.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import { Zone } from './Zone';
2
2
  export interface Zones {
3
- values: Array<Zone>;
3
+ values: Zone[];
4
4
  options?: any;
5
5
  }
package/lib/utilities/getFrequency.js CHANGED
@@ -17,7 +17,7 @@ nucleus, observedNucleusData) {
17
17
  }
18
18
  exports.getFrequency = getFrequency;
19
19
  function checkExistence(...nucleus) {
20
- let nuclei = [];
20
+ const nuclei = [];
21
21
  for (const n of nucleus) {
22
22
  if (!(n in gyromagnetic_ratio_1.gyromagneticRatio)) {
23
23
  nuclei.push(n);
package/lib/utilities/getFrequency.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"getFrequency.js","sourceRoot":"","sources":["../../src/utilities/getFrequency.ts"],"names":[],"mappings":";;;AAAA,2DAA+D;AAgB/D;;GAEG;AACH,SAAgB,YAAY;AAC1B;;GAEG;AACH,OAAgB,EAChB,mBAAwC;IAExC,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,GAAG,mBAAmB,CAAC;IAE/D,cAAc,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;IAEpC,OAAO,CACL,CAAC,SAAS,GAAG,sCAAiB,CAAC,OAAiB,CAAC,CAAC;QAClD,sCAAiB,CAAC,UAAoB,CAAC,CACxC,CAAC;AACJ,CAAC;AAfD,oCAeC;AAED,SAAS,cAAc,CAAC,GAAG,OAAkB;IAC3C,IAAI,MAAM,GAAa,EAAE,CAAC;IAC1B,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE;QACvB,IAAI,CAAC,CAAC,CAAC,IAAI,sCAAiB,CAAC,EAAE;YAC7B,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SAChB;KACF;IACD,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE;QACvB,MAAM,IAAI,KAAK,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,mBAAmB,CAAC,CAAC;KAC3D;AACH,CAAC"}
1
+ {"version":3,"file":"getFrequency.js","sourceRoot":"","sources":["../../src/utilities/getFrequency.ts"],"names":[],"mappings":";;;AAAA,2DAA+D;AAgB/D;;GAEG;AACH,SAAgB,YAAY;AAC1B;;GAEG;AACH,OAAgB,EAChB,mBAAwC;IAExC,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,GAAG,mBAAmB,CAAC;IAE/D,cAAc,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;IAEpC,OAAO,CACL,CAAC,SAAS,GAAG,sCAAiB,CAAC,OAAiB,CAAC,CAAC;QAClD,sCAAiB,CAAC,UAAoB,CAAC,CACxC,CAAC;AACJ,CAAC;AAfD,oCAeC;AAED,SAAS,cAAc,CAAC,GAAG,OAAkB;IAC3C,MAAM,MAAM,GAAa,EAAE,CAAC;IAC5B,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE;QACvB,IAAI,CAAC,CAAC,CAAC,IAAI,sCAAiB,CAAC,EAAE;YAC7B,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SAChB;KACF;IACD,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE;QACvB,MAAM,IAAI,KAAK,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,mBAAmB,CAAC,CAAC;KAC3D;AACH,CAAC"}
package/lib/utilities/resurrectRange.js CHANGED
@@ -16,7 +16,7 @@ function resurrectRange(part, options = {}) {
16
16
  const from = Number(beforeMatch.groups.from);
17
17
  const to = isARange ? Number(beforeMatch.groups.to) : from;
18
18
  const insideParts = split.inside.split(/ *, */);
19
- let signal = { delta: NaN, js: [] };
19
+ const signal = { delta: NaN, js: [] };
20
20
  let range = { from, to, signals: [signal] };
21
21
  const integrationParts = insideParts.filter((part) => part.match(/^[0-9]+\s*H$/));
22
22
  if (integrationParts.length === 1) {
package/lib/utilities/resurrectRange.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"resurrectRange.js","sourceRoot":"","sources":["../../src/utilities/resurrectRange.ts"],"names":[],"mappings":";;;AAAA,iEAA8D;AAI9D,uDAAoD;AACpD,yDAAsD;AAEtD,SAAgB,cAAc,CAAC,IAAY,EAAE,UAAe,EAAE;IAC5D,MAAM,EAAE,OAAO,GAAG,IAAI,EAAE,SAAS,GAAG,GAAG,EAAE,GAAG,OAAO,CAAC;IACpD,MAAM,KAAK,GAAG,IAAA,mCAAgB,EAAC,IAAI,CAAC,CAAC;IACrC,IAAI,CAAC,KAAK,CAAC,MAAM;QAAE,OAAO;IAE1B,MAAM,WAAW,GAAG,2CAA2C,CAAC,IAAI,CAClE,KAAK,CAAC,MAAM,CACb,CAAC;IAEF,IAAI,CAAC,WAAW,IAAI,CAAC,WAAW,CAAC,MAAM;QAAE,OAAO;IAEhD,MAAM,QAAQ,GAAG,WAAW,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,CAAC;IAE9C,MAAM,IAAI,GAAG,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC7C,MAAM,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC3D,MAAM,WAAW,GAAG,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;IAChD,MAAM,MAAM,GAAgB,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC;IACnD,IAAI,KAAK,GAAa,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC;IACtD,MAAM,gBAAgB,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC,IAAS,EAAE,EAAE,CACxD,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,CAC3B,CAAC;IACF,IAAI,gBAAgB,CAAC,MAAM,KAAK,CAAC,EAAE;QACjC,KAAK,CAAC,WAAW,GAAG,MAAM,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,CAAC;KAClE;IAED,MAAM,iBAAiB,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC,IAAS,EAAE,EAAE,CACzD,IAAI,CAAC,KAAK,CAAC,8BAA8B,CAAC,CAC3C,CAAC;IACF,IAAI,iBAAiB,CAAC,MAAM,KAAK,CAAC,EAAE;QAClC,MAAM,YAAY,GAAG,iBAAiB,CAAC,CAAC,CAAC,CAAC;QAC1C,IAAI,YAAY,KAAK,GAAG,EAAE;YACxB,IAAI,QAAQ,EAAE;gBACZ,eAAe;gBACf,MAAM,CAAC,KAAK,GAAG,CAAC,IAAI,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC;gBAC/B,MAAM,CAAC,YAAY,GAAG,YAAY,CAAC;aACpC;iBAAM;gBACL,mBAAmB;gBACnB,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC;gBACpB,MAAM,CAAC,YAAY,GAAG,YAAY,CAAC;aACpC;SACF;aAAM,IAAI,CAAC,QAAQ,EAAE;YACpB,mBAAmB;YACnB,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC;YACpB,MAAM,CAAC,YAAY,GAAG,YAAY,CAAC;SACpC;KACF;IAED,MAAM,UAAU,GAAG,WAAW;SAC3B,MAAM,CAAC,CAAC,IAAS,EAAE,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;SACrD,GAAG,CAAC,CAAC,SAAiB,EAAE,EAAE,CACzB,MAAM,CAAC,SAAS,CAAC,OAAO,CAAC,cAAc,EAAE,KAAK,CAAC,CAAC,OAAO,CAAC,UAAU,EAAE,EAAE,CAAC,CAAC,CACzE,CAAC;IACJ,MAAM,cAAc,GAAG,IAAA,6BAAa,EAAC,MAAM,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC;IAChE,IAAI,cAAc,CAAC,MAAM,KAAK,UAAU,CAAC,MAAM,EAAE;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,cAAc,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC9C,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE;gBACd,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAC;aACtC;YACD,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC;gBACb,QAAQ,EAAE,UAAU,CAAC,CAAC,CAAC;gBACvB,YAAY,EAAE,cAAc,CAAC,CAAC,CAAC;aAChC,CAAC,CAAC;SACJ;KACF;IAED,IAAI,KAAK,CAAC,IAAI,KAAK,KAAK,CAAC,EAAE,EAAE;QAC3B,KAAK,GAAG,EAAE,GAAG,KAAK,EAAE,GAAG,IAAA,iCAAe,EAAC,MAAM,EAAE,EAAE,OAAO,EAAE,SAAS,EAAE,CAAC,EAAE,CAAC;KAC1E;IAED,OAAO,KAAK,CAAC;AACf,CAAC;AAtED,wCAsEC"}
package/lib/xy/xyAutoPeaksPicking.js CHANGED
@@ -6,9 +6,9 @@ const ml_spectra_processing_1 = require("ml-spectra-processing");
6
6
  const convertWidthToHz_1 = require("../peaks/util/convertWidthToHz");
7
7
  function xyAutoPeaksPicking(data, options) {
8
8
  const { from, to, frequency, noiseLevel, thresholdFactor = 3, minMaxRatio = 0.05, broadRatio = 0.00025, useSanPlot = false, smoothY = true, optimize = false, factorLimits = 4, realTopDetection = true, shape = { kind: 'gaussian' }, optimization = { kind: 'lm' }, broadWidth = 0.25, sgOptions = {}, direction = 'positive', } = options;
9
- let pointsPerHz = 1 / frequency / (data.x[1] - data.x[0]);
9
+ const pointsPerHz = 1 / frequency / (data.x[1] - data.x[0]);
10
10
  // we can consider a peak with of 0.5 Hz for the windowSize
11
- let ws = Math.max(Math.round(pointsPerHz / 2), 5);
11
+ const ws = Math.max(Math.round(pointsPerHz / 2), 5);
12
12
  const { windowSize = ws - (ws % 2) + 1, polynomial = 3 } = sgOptions;
13
13
  // check falsy values including NaN
14
14
  if (!windowSize) {
@@ -29,7 +29,7 @@ function xyAutoPeaksPicking(data, options) {
29
29
  data = (0, ml_spectra_processing_1.xyExtract)(data, { zones: [{ from, to }] });
30
30
  }
31
31
  const cutOff = getCutOff(data.y, { noiseLevel, useSanPlot, thresholdFactor });
32
- let getPeakOptions = {
32
+ const getPeakOptions = {
33
33
  shape,
34
34
  frequency,
35
35
  broadWidth,
package/lib/xy/xyAutoPeaksPicking.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"xyAutoPeaksPicking.js","sourceRoot":"","sources":["../../src/xy/xyAutoPeaksPicking.ts"],"names":[],"mappings":";;;AACA,mCAUgB;AAEhB,iEAI+B;AAG/B,qEAAkE;AAgElE,SAAgB,kBAAkB,CAChC,IAAY,EACZ,OAAkC;IAElC,MAAM,EACJ,IAAI,EACJ,EAAE,EACF,SAAS,EACT,UAAU,EACV,eAAe,GAAG,CAAC,EACnB,WAAW,GAAG,IAAI,EAClB,UAAU,GAAG,OAAO,EACpB,UAAU,GAAG,KAAK,EAClB,OAAO,GAAG,IAAI,EACd,QAAQ,GAAG,KAAK,EAChB,YAAY,GAAG,CAAC,EAChB,gBAAgB,GAAG,IAAI,EACvB,KAAK,GAAG,EAAE,IAAI,EAAE,UAAU,EAAE,EAC5B,YAAY,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,EAC7B,UAAU,GAAG,IAAI,EACjB,SAAS,GAAG,EAAE,EACd,SAAS,GAAG,UAAU,GACvB,GAAG,OAAO,CAAC;IAEZ,IAAI,WAAW,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1D,2DAA2D;IAC3D,IAAI,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,WAAW,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAElD,MAAM,EAAE,UAAU,GAAG,EAAE,GAAG,CAAC,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,UAAU,GAAG,CAAC,EAAE,GAAG,SAAS,CAAC;IAErE,mCAAmC;IACnC,IAAI,CAAC,UAAU,EAAE;QACf,MAAM,IAAI,iCAAiC,CAAC;YAC1C,UAAU;YACV,EAAE;YACF,WAAW;YACX,SAAS;YACT,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC;YACrB,SAAS;YACT,qBAAqB,EAAE,mBAAmB;YAC1C,kBAAkB,EAAE,+BAA+B;SACpD,CAAC,CAAC;KACJ;IAED,IAAI,IAAI,CAAC,CAAC,CAAC,MAAM,GAAG,UAAU;QAAE,OAAO,EAAE,CAAC;IAE1C,IAAI,IAAI,KAAK,SAAS,IAAI,EAAE,KAAK,SAAS,EAAE;QAC1C,IAAI,GAAG,IAAA,iCAAS,EAAC,IAAI,EAAE,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,CAAC;KACnD;IAED,MAAM,MAAM,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,UAAU,EAAE,UAAU,EAAE,eAAe,EAAE,CAAC,CAAC;IAE9E,IAAI,cAAc,GAAuB;QACvC,KAAK;QACL,SAAS;QACT,UAAU;QACV,QAAQ;QACR,YAAY;QACZ,WAAW,EAAE,IAAI;QACjB,SAAS,EAAE,EAAE,UAAU,EAAE,UAAU,EAAE;QACrC,WAAW;QACX,UAAU;QACV,UAAU,EAAE,MAAM,CAAC,QAAQ;QAC3B,OAAO;QACP,YAAY;QACZ,gBAAgB;KACjB,CAAC;IAEF,QAAQ,SAAS,EAAE;QACjB,KAAK,UAAU,CAAC,CAAC;YACf,OAAO,WAAW,CAAC,IAAI,EAAE,cAAc,CAAC,CAAC;SAC1C;QACD,KAAK,UAAU,CAAC,CAAC;YACf,OAAO,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,cAAc,CAAC,CAAC;SACvD;QACD,KAAK,MAAM,CAAC,CAAC;YACX,OAAO;gBACL,GAAG,WAAW,CAAC,IAAI,EAAE,cAAc,CAAC;gBACpC,GAAG,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,cAAc,CAAC;aAClD,CAAC;SACH;QACD,OAAO,CAAC,CAAC;YACP,MAAM,SAAS,GAAU,SAAS,CAAC;YACnC,4EAA4E;YAC5E,MAAM,KAAK,CAAC,wBAAwB,SAAS,EAAE,CAAC,CAAC;SAClD;KACF;AACH,CAAC;AAvFD,gDAuFC;AAED,SAAS,gBAAgB,CACvB,IAAY,EACZ,MAA4B,EAC5B,cAAkC;IAElC,cAAc,CAAC,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC;IAC5C,cAAc,CAAC,WAAW,GAAG,KAAK,CAAC;IACnC,OAAO,WAAW,CAAC,IAAI,EAAE,cAAc,CAAC,CAAC;AAC3C,CAAC;AAED,SAAS,WAAW,CAAC,IAAY,EAAE,OAA2B;IAC5D,MAAM,EACJ,KAAK,EACL,SAAS,EACT,UAAU,EACV,QAAQ,EACR,WAAW,EACX,YAAY,EACZ,SAAS,EACT,WAAW,EACX,UAAU,EACV,UAAU,EACV,OAAO,EACP,YAAY,EACZ,gBAAgB,GACjB,GAAG,OAAO,CAAC;IAEZ,MAAM,KAAK,GAAG,IAAA,YAAG,EAAC,IAAI,EAAE;QACtB,SAAS;QACT,WAAW;QACX,WAAW;QACX,UAAU;QACV,OAAO;QACP,gBAAgB;KACjB,CAAC,CAAC;IAEH,MAAM,QAAQ,GAAG,IAAA,iBAAQ,EAAC,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CAAC;IAE3D,MAAM,QAAQ,GAAG,UAAU;QACzB,CAAC,CAAC,IAAA,uBAAc,EAAC,QAAQ,EAAE;YACvB,UAAU;YACV,UAAU;YACV,KAAK;YACL,YAAY;SACb,CAAC,CAAC,GAAG,CAAC,oBAAoB,CAAC;QAC9B,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IAEvC,OAAO,IAAA,mCAAgB,EACrB,QAAQ;QACN,CAAC,CAAC,IAAA,sBAAa,EAAC,IAAI,EAAE,QAAQ,EAAE;YAC5B,KAAK;YACL,YAAY;YACZ,YAAY;SACb,CAAC,CAAC,GAAG,CAAC,oBAAoB,CAAC;QAC9B,CAAC,CAAC,QAAQ,EACZ,EAAE,SAAS,EAAE,CACd,CAAC;AACJ,CAAC;AAED,SAAS,SAAS,CAAC,IAA6B,EAAE,OAAyB;IACzE,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,eAAe,EAAE,GAAG,OAAO,CAAC;IAE5D,MAAM,YAAY,GAAG,CAAC,UAAkB,EAAE,EAAE,CAC1C,OAAO,UAAU,KAAK,QAAQ;QAC5B,CAAC,CAAC,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,CAAC,UAAU,EAAE;QACjD,CAAC,CAAC,UAAU,CAAC;IAEjB,IAAI,UAAU,EAAE;QACd,OAAO,YAAY,CAAC,UAAU,CAAC,CAAC;KACjC;SAAM;QACL,OAAO,UAAU;YACf,CAAC,CAAC,IAAA,qCAAa,EAAC,IAAI,EAAE,EAAE,SAAS,EAAE,eAAe,EAAE,CAAC;YACrD,CAAC,CAAC,YAAY,CAAC,IAAA,uCAAe,EAAC,IAAI,CAAC,GAAG,eAAe,CAAC,CAAC;KAC3D;AACH,CAAC;AAED,SAAS,oBAAoB,CAC3B,IAAyC;IAEzC,MAAM,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,GAAG,IAAI,CAAC;IACxC,OAAO;QACL,EAAE;QACF,CAAC;QACD,CAAC;QACD,KAAK;QACL,KAAK;KACN,CAAC;AACJ,CAAC;AAED;;;GAGG;AACH,MAAa,iCAAkC,SAAQ,KAAK;IAE1D,YAAY,IAA6B;QACvC,KAAK,CACH,sGAAsG,CACvG,CAAC;QACF,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;IACnB,CAAC;CACF;AARD,8EAQC"}
1
+ {"version":3,"file":"xyAutoPeaksPicking.js","sourceRoot":"","sources":["../../src/xy/xyAutoPeaksPicking.ts"],"names":[],"mappings":";;;AACA,mCAUgB;AAEhB,iEAI+B;AAG/B,qEAAkE;AAgElE,SAAgB,kBAAkB,CAChC,IAAY,EACZ,OAAkC;IAElC,MAAM,EACJ,IAAI,EACJ,EAAE,EACF,SAAS,EACT,UAAU,EACV,eAAe,GAAG,CAAC,EACnB,WAAW,GAAG,IAAI,EAClB,UAAU,GAAG,OAAO,EACpB,UAAU,GAAG,KAAK,EAClB,OAAO,GAAG,IAAI,EACd,QAAQ,GAAG,KAAK,EAChB,YAAY,GAAG,CAAC,EAChB,gBAAgB,GAAG,IAAI,EACvB,KAAK,GAAG,EAAE,IAAI,EAAE,UAAU,EAAE,EAC5B,YAAY,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,EAC7B,UAAU,GAAG,IAAI,EACjB,SAAS,GAAG,EAAE,EACd,SAAS,GAAG,UAAU,GACvB,GAAG,OAAO,CAAC;IAEZ,MAAM,WAAW,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC5D,2DAA2D;IAC3D,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,WAAW,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAEpD,MAAM,EAAE,UAAU,GAAG,EAAE,GAAG,CAAC,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,UAAU,GAAG,CAAC,EAAE,GAAG,SAAS,CAAC;IAErE,mCAAmC;IACnC,IAAI,CAAC,UAAU,EAAE;QACf,MAAM,IAAI,iCAAiC,CAAC;YAC1C,UAAU;YACV,EAAE;YACF,WAAW;YACX,SAAS;YACT,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC;YACrB,SAAS;YACT,qBAAqB,EAAE,mBAAmB;YAC1C,kBAAkB,EAAE,+BAA+B;SACpD,CAAC,CAAC;KACJ;IAED,IAAI,IAAI,CAAC,CAAC,CAAC,MAAM,GAAG,UAAU;QAAE,OAAO,EAAE,CAAC;IAE1C,IAAI,IAAI,KAAK,SAAS,IAAI,EAAE,KAAK,SAAS,EAAE;QAC1C,IAAI,GAAG,IAAA,iCAAS,EAAC,IAAI,EAAE,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,CAAC;KACnD;IAED,MAAM,MAAM,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,UAAU,EAAE,UAAU,EAAE,eAAe,EAAE,CAAC,CAAC;IAE9E,MAAM,cAAc,GAAuB;QACzC,KAAK;QACL,SAAS;QACT,UAAU;QACV,QAAQ;QACR,YAAY;QACZ,WAAW,EAAE,IAAI;QACjB,SAAS,EAAE,EAAE,UAAU,EAAE,UAAU,EAAE;QACrC,WAAW;QACX,UAAU;QACV,UAAU,EAAE,MAAM,CAAC,QAAQ;QAC3B,OAAO;QACP,YAAY;QACZ,gBAAgB;KACjB,CAAC;IAEF,QAAQ,SAAS,EAAE;QACjB,KAAK,UAAU,CAAC,CAAC;YACf,OAAO,WAAW,CAAC,IAAI,EAAE,cAAc,CAAC,CAAC;SAC1C;QACD,KAAK,UAAU,CAAC,CAAC;YACf,OAAO,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,cAAc,CAAC,CAAC;SACvD;QACD,KAAK,MAAM,CAAC,CAAC;YACX,OAAO;gBACL,GAAG,WAAW,CAAC,IAAI,EAAE,cAAc,CAAC;gBACpC,GAAG,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,cAAc,CAAC;aAClD,CAAC;SACH;QACD,OAAO,CAAC,CAAC;YACP,MAAM,SAAS,GAAU,SAAS,CAAC;YACnC,4EAA4E;YAC5E,MAAM,KAAK,CAAC,wBAAwB,SAAS,EAAE,CAAC,CAAC;SAClD;KACF;AACH,CAAC;AAvFD,gDAuFC;AAED,SAAS,gBAAgB,CACvB,IAAY,EACZ,MAA4B,EAC5B,cAAkC;IAElC,cAAc,CAAC,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC;IAC5C,cAAc,CAAC,WAAW,GAAG,KAAK,CAAC;IACnC,OAAO,WAAW,CAAC,IAAI,EAAE,cAAc,CAAC,CAAC;AAC3C,CAAC;AAED,SAAS,WAAW,CAAC,IAAY,EAAE,OAA2B;IAC5D,MAAM,EACJ,KAAK,EACL,SAAS,EACT,UAAU,EACV,QAAQ,EACR,WAAW,EACX,YAAY,EACZ,SAAS,EACT,WAAW,EACX,UAAU,EACV,UAAU,EACV,OAAO,EACP,YAAY,EACZ,gBAAgB,GACjB,GAAG,OAAO,CAAC;IAEZ,MAAM,KAAK,GAAG,IAAA,YAAG,EAAC,IAAI,EAAE;QACtB,SAAS;QACT,WAAW;QACX,WAAW;QACX,UAAU;QACV,OAAO;QACP,gBAAgB;KACjB,CAAC,CAAC;IAEH,MAAM,QAAQ,GAAG,IAAA,iBAAQ,EAAC,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CAAC;IAE3D,MAAM,QAAQ,GAAG,UAAU;QACzB,CAAC,CAAC,IAAA,uBAAc,EAAC,QAAQ,EAAE;YACvB,UAAU;YACV,UAAU;YACV,KAAK;YACL,YAAY;SACb,CAAC,CAAC,GAAG,CAAC,oBAAoB,CAAC;QAC9B,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IAEvC,OAAO,IAAA,mCAAgB,EACrB,QAAQ;QACN,CAAC,CAAC,IAAA,sBAAa,EAAC,IAAI,EAAE,QAAQ,EAAE;YAC5B,KAAK;YACL,YAAY;YACZ,YAAY;SACb,CAAC,CAAC,GAAG,CAAC,oBAAoB,CAAC;QAC9B,CAAC,CAAC,QAAQ,EACZ,EAAE,SAAS,EAAE,CACd,CAAC;AACJ,CAAC;AAED,SAAS,SAAS,CAAC,IAA6B,EAAE,OAAyB;IACzE,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,eAAe,EAAE,GAAG,OAAO,CAAC;IAE5D,MAAM,YAAY,GAAG,CAAC,UAAkB,EAAE,EAAE,CAC1C,OAAO,UAAU,KAAK,QAAQ;QAC5B,CAAC,CAAC,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,CAAC,UAAU,EAAE;QACjD,CAAC,CAAC,UAAU,CAAC;IAEjB,IAAI,UAAU,EAAE;QACd,OAAO,YAAY,CAAC,UAAU,CAAC,CAAC;KACjC;SAAM;QACL,OAAO,UAAU;YACf,CAAC,CAAC,IAAA,qCAAa,EAAC,IAAI,EAAE,EAAE,SAAS,EAAE,eAAe,EAAE,CAAC;YACrD,CAAC,CAAC,YAAY,CAAC,IAAA,uCAAe,EAAC,IAAI,CAAC,GAAG,eAAe,CAAC,CAAC;KAC3D;AACH,CAAC;AAED,SAAS,oBAAoB,CAC3B,IAAyC;IAEzC,MAAM,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,GAAG,IAAI,CAAC;IACxC,OAAO;QACL,EAAE;QACF,CAAC;QACD,CAAC;QACD,KAAK;QACL,KAAK;KACN,CAAC;AACJ,CAAC;AAED;;;GAGG;AACH,MAAa,iCAAkC,SAAQ,KAAK;IAE1D,YAAY,IAA6B;QACvC,KAAK,CACH,sGAAsG,CACvG,CAAC;QACF,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;IACnB,CAAC;CACF;AARD,8EAQC"}
package/lib/xyz/quadrature.js CHANGED
@@ -6,13 +6,11 @@ const checkData2DFid_1 = require("../utilities/checkData2DFid");
6
6
  function quadrature(data, options) {
7
7
  (0, checkData2DFid_1.checkData2DFid)(data);
8
8
  const { fnMode } = options;
9
- switch (fnMode) {
9
+ switch (fnMode.toLowerCase()) {
10
10
  case 'ttpi':
11
11
  return ttpiQuadrature(data);
12
12
  case 'states':
13
13
  return shrQuadrature(data);
14
- case 'echo':
15
- return echoQuadrature(data);
16
14
  default:
17
15
  return {
18
16
  re: data.re.z,
@@ -21,22 +19,6 @@ function quadrature(data, options) {
21
19
  }
22
20
  }
23
21
  exports.quadrature = quadrature;
24
- function echoQuadrature(data) {
25
- const { re: { z: reMatrix }, im: { z: imMatrix }, } = data;
26
- const newRe = [];
27
- const newIm = [];
28
- for (let i = 0; i < reMatrix.length; i += 2) {
29
- let reCosine = reMatrix[i];
30
- let imCosine = imMatrix[i];
31
- let reSine = reMatrix[i + 1];
32
- let imSine = imMatrix[i + 1];
33
- newRe.push((0, ml_spectra_processing_1.xSubtract)((0, ml_spectra_processing_1.xMultiply)(imSine, -1), imCosine));
34
- newRe.push((0, ml_spectra_processing_1.xSubtract)(reSine, reCosine));
35
- newIm.push((0, ml_spectra_processing_1.xAdd)(reSine, reCosine));
36
- newIm.push((0, ml_spectra_processing_1.xSubtract)(imSine, imCosine));
37
- }
38
- return { re: newRe, im: newIm };
39
- }
40
22
  function shrQuadrature(data) {
41
23
  const { re, im } = data;
42
24
  return { re: re.z, im: im.z };
package/lib/xyz/quadrature.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"quadrature.js","sourceRoot":"","sources":["../../src/xyz/quadrature.ts"],"names":[],"mappings":";;;AACA,iEAAkD;AAElD,gEAAgF;AAEhF,SAAgB,UAAU,CAAC,IAAe,EAAE,OAA2B;IACrE,IAAA,+BAAc,EAAC,IAAI,CAAC,CAAC;IAErB,MAAM,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;IAE3B,QAAQ,MAAM,CAAC,WAAW,EAAE,EAAE;QAC5B,KAAK,MAAM;YACT,OAAO,cAAc,CAAC,IAAI,CAAC,CAAC;QAC9B,KAAK,QAAQ;YACX,OAAO,aAAa,CAAC,IAAI,CAAC,CAAC;QAC7B;YACE,OAAO;gBACL,EAAE,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC;gBACb,EAAE,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC;aACd,CAAC;KACL;AACH,CAAC;AAhBD,gCAgBC;AAED,SAAS,aAAa,CAAC,IAAuB;IAC5C,MAAM,EAAE,EAAE,EAAE,EAAE,EAAE,GAAG,IAAI,CAAC;IACxB,OAAO,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,CAAC;AAChC,CAAC;AAED,SAAS,cAAc,CAAC,IAAuB;IAC7C,MAAM,KAAK,GAAkB,EAAE,CAAC;IAChC,MAAM,KAAK,GAAkB,EAAE,CAAC;IAEhC,MAAM,EACJ,EAAE,EAAE,EAAE,CAAC,EAAE,QAAQ,EAAE,EACnB,EAAE,EAAE,EAAE,CAAC,EAAE,QAAQ,EAAE,GACpB,GAAG,IAAI,CAAC;IACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACxC,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,IAAA,iCAAS,EAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QACrE,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,IAAA,iCAAS,EAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;KACtE;IAED,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC;AAClC,CAAC"}
package/lib/xyz/util/fft2d/digitalFilter.js CHANGED
@@ -2,9 +2,9 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.digitalFilter = void 0;
4
4
  function digitalFilter(data, options) {
5
- let { digitalFilterValue = 0 } = options;
6
- let re = new Float64Array(data.re);
7
- let im = new Float64Array(data.im);
5
+ const { digitalFilterValue = 0 } = options;
6
+ const re = new Float64Array(data.re);
7
+ const im = new Float64Array(data.im);
8
8
  let pointsToShift = Math.floor(digitalFilterValue);
9
9
  const skip = 0;
10
10
  pointsToShift += 0;
package/lib/xyz/util/fft2d/digitalFilter.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"digitalFilter.js","sourceRoot":"","sources":["../../../../src/xyz/util/fft2d/digitalFilter.ts"],"names":[],"mappings":";;;AAEA,SAAgB,aAAa,CAC3B,IAAc,EACd,OAAuC;IAEvC,IAAI,EAAE,kBAAkB,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC;IACzC,IAAI,EAAE,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACnC,IAAI,EAAE,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEnC,IAAI,aAAa,GAAG,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;IAEnD,MAAM,IAAI,GAAG,CAAC,CAAC;IACf,aAAa,IAAI,CAAC,CAAC;IAEnB,MAAM,KAAK,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;IAC1C,MAAM,KAAK,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;IAC1C,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;IACnC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,aAAa,CAAC,EAAE,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,CAAC;IACpE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;IACnC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,aAAa,CAAC,EAAE,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,CAAC;IAEpE,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC;AAClC,CAAC;AArBD,sCAqBC"}
1
+ {"version":3,"file":"digitalFilter.js","sourceRoot":"","sources":["../../../../src/xyz/util/fft2d/digitalFilter.ts"],"names":[],"mappings":";;;AAEA,SAAgB,aAAa,CAC3B,IAAc,EACd,OAAuC;IAEvC,MAAM,EAAE,kBAAkB,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC;IAC3C,MAAM,EAAE,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACrC,MAAM,EAAE,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAErC,IAAI,aAAa,GAAG,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;IAEnD,MAAM,IAAI,GAAG,CAAC,CAAC;IACf,aAAa,IAAI,CAAC,CAAC;IAEnB,MAAM,KAAK,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;IAC1C,MAAM,KAAK,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;IAC1C,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;IACnC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,aAAa,CAAC,EAAE,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,CAAC;IACpE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;IACnC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,aAAa,CAAC,EAAE,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,CAAC;IAEpE,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC;AAClC,CAAC;AArBD,sCAqBC"}
package/lib/xyz/util/fft2d/fftDirectDimension.d.ts CHANGED
@@ -17,7 +17,7 @@ export interface DirectDimensionOptions {
17
17
  export declare function fftDirectDimension(data: {
18
18
  re: DoubleArray[];
19
19
  im: DoubleArray[];
20
- }, options: DirectDimensionOptions): {
20
+ }, options?: DirectDimensionOptions): {
21
21
  re: Matrix;
22
22
  im: Matrix;
23
23
  };
package/lib/xyz/util/fft2d/fftDirectDimension.js CHANGED
@@ -10,7 +10,7 @@ const apodization_1 = require("../../../apodization/apodization");
10
10
  const digitalFilter_1 = require("./digitalFilter");
11
11
  const removeDCOffset_1 = require("./removeDCOffset");
12
12
  const zeroFilling_1 = require("./zeroFilling");
13
- function fftDirectDimension(data, options) {
13
+ function fftDirectDimension(data, options = {}) {
14
14
  const { re: reData, im: imData } = data;
15
15
  const nbRows = reData.length;
16
16
  const nbColumns = reData[0].length;
@@ -19,8 +19,8 @@ function fftDirectDimension(data, options) {
19
19
  const nbPointsF2 = zeroFillingF2?.nbPoints || 2 ** Math.round(Math.log2(nbColumns * f2Factor));
20
20
  const reFFT = new ml_matrix_1.default(nbRows, nbPointsF2);
21
21
  const imFFT = new ml_matrix_1.default(nbRows, nbPointsF2);
22
- const { apodization: apodizationF2 } = options;
23
- let { ph0: ph0F2, ph1: ph1F2, mode: pcModeF2 = 'no', } = options?.phaseCorrection || {};
22
+ const { apodization: apodizationF2, phaseCorrection = {} } = options;
23
+ const { ph0: ph0F2, ph1: ph1F2, mode: pcModeF2 = 'no' } = phaseCorrection;
24
24
  for (let i = 0; i < nbRows; i++) {
25
25
  const newData = (0, digitalFilter_1.digitalFilter)({ re: reData[i], im: imData[i] }, { digitalFilterValue });
26
26
  Object.assign(newData, (0, removeDCOffset_1.removeDCOffset)(newData, { digitalFilterValue }));
@@ -34,14 +34,6 @@ function fftDirectDimension(data, options) {
34
34
  if (dfResidual > 0) {
35
35
  Object.assign(newData, (0, ml_spectra_processing_1.reimPhaseCorrection)(newData, 0, -dfResidual));
36
36
  }
37
- if (i === 0 &&
38
- pcModeF2 === 'pk' &&
39
- ph0F2 === undefined &&
40
- ph1F2 === undefined) {
41
- const phased = (0, ml_spectra_processing_1.reimAutoPhaseCorrection)(newData, { magnitudeMode: false });
42
- ph0F2 = phased.ph0;
43
- ph1F2 = phased.ph1;
44
- }
45
37
  if (pcModeF2 === 'pk' && ph0F2 !== undefined && ph1F2 !== undefined) {
46
38
  Object.assign(newData, (0, ml_spectra_processing_1.reimPhaseCorrection)(newData, (ph0F2 * Math.PI) / 180, (ph1F2 * Math.PI) / 180));
47
39
  }
package/lib/xyz/util/fft2d/fftDirectDimension.js.map CHANGED
@@ -1 +1 @@
1
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