nmr-processing 6.0.0 → 6.0.4

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Files changed (232) hide show
  1. package/lib/assignment/get1HAssignments.d.ts +2 -2
  2. package/lib/{types → assignment}/nmrAssigment.d.ts +2 -2
  3. package/lib/{types → assignment}/nmrAssigment.js +0 -0
  4. package/lib/assignment/nmrAssigment.js.map +1 -0
  5. package/lib/assignment/utils/createMapPossibleAssignments.d.ts +1 -1
  6. package/lib/databases/DatabaseNMREntry.d.ts +1 -1
  7. package/lib/index.d.ts +8 -9
  8. package/lib/ml-matrix-convolution.d.ts +8 -0
  9. package/lib/ml-matrix-convolution.js +2 -0
  10. package/lib/ml-matrix-convolution.js.map +1 -0
  11. package/lib/ml-simple-clustering.d.ts +8 -0
  12. package/lib/ml-simple-clustering.js +2 -0
  13. package/lib/ml-simple-clustering.js.map +1 -0
  14. package/lib/{types → peaks}/NMRPeak1D.d.ts +0 -0
  15. package/lib/{types → peaks}/NMRPeak1D.js +0 -0
  16. package/{lib-esm/types → lib/peaks}/NMRPeak1D.js.map +1 -1
  17. package/lib/peaks/peaksFilterImpurities.d.ts +1 -1
  18. package/lib/peaks/peaksFilterImpurities.js.map +1 -1
  19. package/lib/peaks/peaksToRanges.d.ts +2 -2
  20. package/lib/peaks/util/determineRealTop.js +2 -5
  21. package/lib/peaks/util/determineRealTop.js.map +1 -1
  22. package/lib/peaks/util/jAnalyzer.d.ts +2 -2
  23. package/lib/peaks/util/joinRanges.d.ts +1 -1
  24. package/lib/peaks/util/peakOptimizer.d.ts +1 -1
  25. package/lib/{types → prediction}/dataStructure.d.ts +0 -0
  26. package/lib/{types → prediction}/dataStructure.js +0 -0
  27. package/lib/prediction/dataStructure.js.map +1 -0
  28. package/lib/prediction/predictAll.d.ts +1 -1
  29. package/lib/prediction/predictAll.js.map +1 -1
  30. package/lib/prediction/predictCOSY.d.ts +1 -1
  31. package/lib/prediction/predictCOSY.js.map +1 -1
  32. package/lib/prediction/predictCarbon.d.ts +2 -2
  33. package/lib/prediction/predictCarbon.js.map +1 -1
  34. package/lib/prediction/predictHMBC.d.ts +1 -1
  35. package/lib/prediction/predictHMBC.js.map +1 -1
  36. package/lib/prediction/predictHSQC.d.ts +1 -1
  37. package/lib/prediction/predictHSQC.js.map +1 -1
  38. package/lib/prediction/predictProton.d.ts +1 -1
  39. package/lib/prediction/predictProton.js +1 -1
  40. package/lib/prediction/predictProton.js.map +1 -1
  41. package/lib/{types → prediction}/prediction1D.d.ts +2 -2
  42. package/lib/{types → prediction}/prediction1D.js +0 -0
  43. package/lib/prediction/prediction1D.js.map +1 -0
  44. package/lib/prediction/utils/fetchPrediction.d.ts +1 -1
  45. package/lib/prediction/utils/getFilteredIDiaIDs.d.ts +1 -1
  46. package/lib/prediction/utils/getPredictions.d.ts +1 -1
  47. package/lib/prediction/utils/getPredictions.js +1 -1
  48. package/lib/prediction/utils/getPredictions.js.map +1 -1
  49. package/lib/prediction/utils/predict2D.d.ts +2 -2
  50. package/lib/prediction/utils/queryByHOSE.d.ts +1 -1
  51. package/lib/ranges/rangesToACS.d.ts +1 -1
  52. package/lib/ranges/rangesToACS.js +8 -9
  53. package/lib/ranges/rangesToACS.js.map +1 -1
  54. package/lib/ranges/rangesToXY.d.ts +1 -1
  55. package/lib/ranges/rangesToXY.js.map +1 -1
  56. package/lib/signal/signalJoinCouplings.d.ts +1 -1
  57. package/lib/signal/signalMultiplicityPattern.d.ts +1 -1
  58. package/lib/{types → signals}/NMRSignal1D.d.ts +1 -1
  59. package/lib/{types → signals}/NMRSignal1D.js +0 -0
  60. package/lib/{types → signals}/NMRSignal1D.js.map +1 -1
  61. package/lib/signals/hackSignalsToXY.d.ts +1 -1
  62. package/lib/{types → signals}/jcoupling.d.ts +0 -0
  63. package/lib/{types → signals}/jcoupling.js +0 -0
  64. package/lib/{types → signals}/jcoupling.js.map +1 -1
  65. package/lib/signals/signals2DToZ.d.ts +1 -1
  66. package/lib/signals/signalsJoin.d.ts +3 -3
  67. package/lib/signals/signalsJoin.js.map +1 -1
  68. package/lib/signals/signalsToRanges.d.ts +2 -2
  69. package/lib/signals/signalsToRanges.js.map +1 -1
  70. package/lib/signals/signalsToXY.d.ts +1 -1
  71. package/lib/signals/simulation/signalsToSpinSystem.d.ts +2 -2
  72. package/lib/signals/simulation/simulate1D.d.ts +1 -1
  73. package/lib/signals/simulation/simulate1D.js +2 -1
  74. package/lib/signals/simulation/simulate1D.js.map +1 -1
  75. package/lib/signals/simulation/splitSpinSystem.d.ts +1 -1
  76. package/lib/{types → signals}/spinSystem.d.ts +0 -0
  77. package/lib/{types → signals}/spinSystem.js +0 -0
  78. package/lib/{types → signals}/spinSystem.js.map +1 -1
  79. package/lib/{types → utilities}/MakeMandatory.d.ts +0 -0
  80. package/lib/{types → utilities}/MakeMandatory.js +0 -0
  81. package/lib/utilities/MakeMandatory.js.map +1 -0
  82. package/lib/utilities/rangeFromSignal.d.ts +1 -1
  83. package/lib/utilities/resurrect.d.ts +1 -1
  84. package/lib/utilities/resurrectRange.d.ts +1 -1
  85. package/lib/{types → xy}/NMRRange.d.ts +1 -1
  86. package/lib/{types → xy}/NMRRange.js +0 -0
  87. package/lib/{types → xy}/NMRRange.js.map +1 -1
  88. package/lib/xy/xyAutoRangesPicking.d.ts +2 -2
  89. package/lib/xy/xyAutoRangesPicking.js.map +1 -1
  90. package/lib/{types → xyz}/NMRSignal2D.d.ts +0 -1
  91. package/lib/{types → xyz}/NMRSignal2D.js +0 -0
  92. package/lib/{types → xyz}/NMRSignal2D.js.map +1 -1
  93. package/lib/{types → xyz}/NMRZone.d.ts +0 -0
  94. package/lib/{types → xyz}/NMRZone.js +0 -0
  95. package/lib/{types → xyz}/NMRZone.js.map +1 -1
  96. package/lib/xyz/xyzAutoZonesPicking.d.ts +2 -2
  97. package/lib/xyz/xyzAutoZonesPicking.js.map +1 -1
  98. package/lib/xyz/xyzJResAnalyzer.d.ts +1 -1
  99. package/lib/xyz/xyzJResAnalyzer.js.map +1 -1
  100. package/lib-esm/{types → assignment}/nmrAssigment.js +0 -0
  101. package/lib-esm/assignment/nmrAssigment.js.map +1 -0
  102. package/lib-esm/ml-matrix-convolution.js +2 -0
  103. package/lib-esm/ml-matrix-convolution.js.map +1 -0
  104. package/lib-esm/ml-simple-clustering.js +2 -0
  105. package/lib-esm/ml-simple-clustering.js.map +1 -0
  106. package/lib-esm/{types → peaks}/NMRPeak1D.js +0 -0
  107. package/{lib/types → lib-esm/peaks}/NMRPeak1D.js.map +1 -1
  108. package/lib-esm/peaks/peaksFilterImpurities.js.map +1 -1
  109. package/lib-esm/peaks/util/determineRealTop.js +2 -2
  110. package/lib-esm/peaks/util/determineRealTop.js.map +1 -1
  111. package/lib-esm/{types → prediction}/dataStructure.js +0 -0
  112. package/lib-esm/prediction/dataStructure.js.map +1 -0
  113. package/lib-esm/prediction/predictAll.js.map +1 -1
  114. package/lib-esm/prediction/predictCOSY.js.map +1 -1
  115. package/lib-esm/prediction/predictCarbon.js.map +1 -1
  116. package/lib-esm/prediction/predictHMBC.js.map +1 -1
  117. package/lib-esm/prediction/predictHSQC.js.map +1 -1
  118. package/lib-esm/prediction/predictProton.js +1 -1
  119. package/lib-esm/prediction/predictProton.js.map +1 -1
  120. package/lib-esm/{types → prediction}/prediction1D.js +0 -0
  121. package/lib-esm/prediction/prediction1D.js.map +1 -0
  122. package/lib-esm/prediction/utils/getPredictions.js +1 -1
  123. package/lib-esm/prediction/utils/getPredictions.js.map +1 -1
  124. package/lib-esm/ranges/rangesToACS.js +8 -9
  125. package/lib-esm/ranges/rangesToACS.js.map +1 -1
  126. package/lib-esm/ranges/rangesToXY.js.map +1 -1
  127. package/lib-esm/{types → signals}/NMRSignal1D.js +0 -0
  128. package/lib-esm/{types → signals}/NMRSignal1D.js.map +1 -1
  129. package/lib-esm/{types → signals}/jcoupling.js +0 -0
  130. package/lib-esm/{types → signals}/jcoupling.js.map +1 -1
  131. package/lib-esm/signals/signalsJoin.js.map +1 -1
  132. package/lib-esm/signals/signalsToRanges.js.map +1 -1
  133. package/lib-esm/signals/simulation/simulate1D.js +2 -1
  134. package/lib-esm/signals/simulation/simulate1D.js.map +1 -1
  135. package/lib-esm/{types → signals}/spinSystem.js +0 -0
  136. package/lib-esm/{types → signals}/spinSystem.js.map +1 -1
  137. package/lib-esm/{types → utilities}/MakeMandatory.js +0 -0
  138. package/lib-esm/utilities/MakeMandatory.js.map +1 -0
  139. package/lib-esm/{types → xy}/NMRRange.js +0 -0
  140. package/lib-esm/{types → xy}/NMRRange.js.map +1 -1
  141. package/lib-esm/xy/xyAutoRangesPicking.js.map +1 -1
  142. package/lib-esm/{types → xyz}/NMRSignal2D.js +0 -0
  143. package/lib-esm/{types → xyz}/NMRSignal2D.js.map +1 -1
  144. package/lib-esm/{types → xyz}/NMRZone.js +0 -0
  145. package/lib-esm/{types → xyz}/NMRZone.js.map +1 -1
  146. package/lib-esm/xyz/xyzAutoZonesPicking.js.map +1 -1
  147. package/lib-esm/xyz/xyzJResAnalyzer.js.map +1 -1
  148. package/package.json +20 -32
  149. package/src/assignment/get13CAssignments.ts +1 -1
  150. package/src/assignment/get1HAssignments.ts +2 -2
  151. package/src/{types → assignment}/nmrAssigment.ts +2 -2
  152. package/src/assignment/utils/createMapPossibleAssignments.ts +1 -1
  153. package/src/databases/DatabaseNMREntry.ts +1 -1
  154. package/src/index.ts +8 -9
  155. package/src/{types/ml-matrix-convolution/index.d.ts → ml-matrix-convolution.ts} +0 -0
  156. package/src/{types/ml-matrix-peaks-finder/index.d.ts → ml-matrix-peaks-finder.d.ts} +0 -0
  157. package/src/{types/ml-simple-clustering/index.d.ts → ml-simple-clustering.ts} +0 -0
  158. package/src/{types/ml-sparse-matrix/index.d.ts → ml-sparse-matrix.d.ts} +0 -0
  159. package/src/{types/ml-tree-set/index.d.ts → ml-tree-set.d.ts} +0 -0
  160. package/src/{types/modules/nmr-parser.ts → nmr-parser.d.ts} +0 -0
  161. package/src/{types/openchemlib-utils/index..d.ts → openchemlib.d.ts} +0 -0
  162. package/src/{types → peaks}/NMRPeak1D.ts +0 -0
  163. package/src/peaks/peaksFilterImpurities.ts +2 -1
  164. package/src/peaks/peaksToRanges.ts +4 -4
  165. package/src/peaks/util/determineRealTop.ts +2 -2
  166. package/src/peaks/util/jAnalyzer.ts +2 -2
  167. package/src/peaks/util/joinRanges.ts +1 -1
  168. package/src/peaks/util/peakOptimizer.ts +1 -1
  169. package/src/{types → prediction}/dataStructure.ts +0 -0
  170. package/src/prediction/predictAll.ts +1 -2
  171. package/src/prediction/predictCOSY.ts +1 -2
  172. package/src/prediction/predictCarbon.ts +4 -4
  173. package/src/prediction/predictHMBC.ts +1 -2
  174. package/src/prediction/predictHSQC.ts +1 -2
  175. package/src/prediction/predictProton.ts +4 -3
  176. package/src/{types → prediction}/prediction1D.ts +2 -2
  177. package/src/prediction/utils/fetchPrediction.ts +1 -1
  178. package/src/prediction/utils/getPredictions.ts +2 -2
  179. package/src/prediction/utils/predict2D.ts +4 -4
  180. package/src/prediction/utils/queryByHOSE.ts +1 -1
  181. package/src/ranges/rangesToACS.ts +20 -13
  182. package/src/ranges/rangesToXY.ts +3 -3
  183. package/src/signal/signalJoinCouplings.ts +3 -3
  184. package/src/signal/signalMultiplicityPattern.ts +1 -1
  185. package/src/{types → signals}/NMRSignal1D.ts +2 -1
  186. package/src/signals/hackSignalsToXY.ts +2 -2
  187. package/src/{types → signals}/jcoupling.ts +0 -0
  188. package/src/signals/signals2DToZ.ts +1 -1
  189. package/src/signals/signalsJoin.ts +4 -3
  190. package/src/signals/signalsToRanges.ts +4 -3
  191. package/src/signals/signalsToXY.ts +3 -3
  192. package/src/signals/simulation/signalsToSpinSystem.ts +4 -4
  193. package/src/signals/simulation/simulate1D.ts +3 -2
  194. package/src/signals/simulation/splitSpinSystem.ts +1 -1
  195. package/src/{types → signals}/spinSystem.ts +0 -0
  196. package/src/{types → utilities}/MakeMandatory.ts +0 -0
  197. package/src/utilities/rangeFromSignal.ts +1 -1
  198. package/src/utilities/resurrect.ts +1 -1
  199. package/src/utilities/resurrectRange.ts +2 -2
  200. package/src/{types → xy}/NMRRange.ts +1 -1
  201. package/src/xy/xyAutoRangesPicking.ts +3 -2
  202. package/src/{types → xyz}/NMRSignal2D.ts +0 -2
  203. package/src/{types → xyz}/NMRZone.ts +0 -0
  204. package/src/xyz/xyzAutoZonesPicking.ts +4 -3
  205. package/src/xyz/xyzJResAnalyzer.ts +3 -2
  206. package/lib/types/MakeMandatory.js.map +0 -1
  207. package/lib/types/XYNumberArray.d.ts +0 -4
  208. package/lib/types/XYNumberArray.js +0 -3
  209. package/lib/types/XYNumberArray.js.map +0 -1
  210. package/lib/types/dataStructure.js.map +0 -1
  211. package/lib/types/modules/nmr-parser.d.ts +0 -11
  212. package/lib/types/modules/nmr-parser.js +0 -2
  213. package/lib/types/modules/nmr-parser.js.map +0 -1
  214. package/lib/types/nmrAssigment.js.map +0 -1
  215. package/lib/types/prediction1D.js.map +0 -1
  216. package/lib/types/prediction2D.d.ts +0 -0
  217. package/lib/types/prediction2D.js +0 -2
  218. package/lib/types/prediction2D.js.map +0 -1
  219. package/lib-esm/types/MakeMandatory.js.map +0 -1
  220. package/lib-esm/types/XYNumberArray.js +0 -2
  221. package/lib-esm/types/XYNumberArray.js.map +0 -1
  222. package/lib-esm/types/dataStructure.js.map +0 -1
  223. package/lib-esm/types/modules/nmr-parser.js +0 -2
  224. package/lib-esm/types/modules/nmr-parser.js.map +0 -1
  225. package/lib-esm/types/nmrAssigment.js.map +0 -1
  226. package/lib-esm/types/prediction1D.js.map +0 -1
  227. package/lib-esm/types/prediction2D.js +0 -2
  228. package/lib-esm/types/prediction2D.js.map +0 -1
  229. package/src/types/XYNumberArray.ts +0 -4
  230. package/src/types/ml-levenberg-marquardt/index.d.ts +0 -13
  231. package/src/types/ml-spectra-processing/index.d.ts +0 -57
  232. package/src/types/prediction2D.ts +0 -0
@@ -1,8 +1,8 @@
1
1
  import { Molecule } from 'openchemlib';
2
2
  import { NMRRange } from '..';
3
3
  import { PredictProtonOptions } from '../prediction/predictProton';
4
- import { MakeMandatory } from '../types/MakeMandatory';
5
- import type { NMRSignal1D } from '../types/NMRSignal1D';
4
+ import type { NMRSignal1D } from '../signals/NMRSignal1D';
5
+ import { MakeMandatory } from '../utilities/MakeMandatory';
6
6
  import { RestrictionByCS } from './utils/buildAssignments';
7
7
  export declare type NMRSignal1DWithAtomsAndDiaIDs = MakeMandatory<NMRSignal1D, 'atoms' | 'diaIDs' | 'nbAtoms'>;
8
8
  export declare type NMRRangeWithIntegration = MakeMandatory<NMRRange, 'integration'>;
@@ -1,6 +1,6 @@
1
1
  import { Molecule } from 'openchemlib';
2
- import type { NMRRange } from './NMRRange';
3
- import type { NMRZone } from './NMRZone';
2
+ import type { NMRRange } from '../xy/NMRRange';
3
+ import type { NMRZone } from '../xyz/NMRZone';
4
4
  export interface NMRAssignmentType {
5
5
  /**
6
6
  * It has the number of each atoms in the chemical structure. e.g. { C: 6, H: 6 }
File without changes
@@ -0,0 +1 @@
1
+ {"version":3,"file":"nmrAssigment.js","sourceRoot":"","sources":["../../src/assignment/nmrAssigment.ts"],"names":[],"mappings":""}
@@ -1,4 +1,4 @@
1
- import { MakeMandatory } from '../../types/MakeMandatory';
1
+ import { MakeMandatory } from '../../utilities/MakeMandatory';
2
2
  import type { Targets } from '../get1HAssignments';
3
3
  import type { RestrictionByCS, Predictions1Dassignments } from './buildAssignments';
4
4
  declare type RestrictionByCSMandatory = MakeMandatory<RestrictionByCS, 'chemicalShiftRestriction' | 'tolerance' | 'useChemicalShiftScore'>;
@@ -1,4 +1,4 @@
1
- import { NMRRange } from '../types/NMRRange';
1
+ import { NMRRange } from '../xy/NMRRange';
2
2
  export interface DatabaseNMREntry {
3
3
  smiles?: string;
4
4
  solvent: string;
package/lib/index.d.ts CHANGED
@@ -24,12 +24,11 @@ export * from './xyz/xyzJResAnalyzer';
24
24
  export * from './databases/getDatabase';
25
25
  export * from './databases/carbonImpurities';
26
26
  export * from './databases/protonImpurities';
27
- export type { NMRSignal1D } from './types/NMRSignal1D';
28
- export type { NMRSignal2D } from './types/NMRSignal2D';
29
- export type { NMRRange } from './types/NMRRange';
30
- export type { NMRZone } from './types/NMRZone';
31
- export type { XYNumberArray } from './types/XYNumberArray';
32
- export type { NMRPeak1D } from './types/NMRPeak1D';
33
- export type { Prediction1D } from './types/prediction1D';
34
- export type { Jcoupling } from './types/jcoupling';
35
- export type { DataBaseLevelStructure, DataBaseStructure, } from './types/dataStructure';
27
+ export type { NMRSignal1D } from './signals/NMRSignal1D';
28
+ export type { NMRSignal2D } from './xyz/NMRSignal2D';
29
+ export type { NMRRange } from './xy/NMRRange';
30
+ export type { NMRZone } from './xyz/NMRZone';
31
+ export type { NMRPeak1D } from './peaks/NMRPeak1D';
32
+ export type { Prediction1D } from './prediction/prediction1D';
33
+ export type { Jcoupling } from './signals/jcoupling';
34
+ export type { DataBaseLevelStructure, DataBaseStructure, } from './prediction/dataStructure';
@@ -0,0 +1,8 @@
1
+ declare module 'ml-matrix-convolution' {
2
+ interface ConvolutionOptions {
3
+ rows: number;
4
+ cols: number;
5
+ }
6
+ function fft(absoluteData: number[] | Float64Array, kernel: number[][] | Float64Array[], options: ConvolutionOptions): number[] | Float64Array;
7
+ function direct(absoluteData: number[] | Float64Array, kernel: number[][] | Float64Array[], options: ConvolutionOptions): number[] | Float64Array;
8
+ }
@@ -0,0 +1,2 @@
1
+ "use strict";
2
+ //# sourceMappingURL=ml-matrix-convolution.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ml-matrix-convolution.js","sourceRoot":"","sources":["../src/ml-matrix-convolution.ts"],"names":[],"mappings":""}
@@ -0,0 +1,8 @@
1
+ declare module 'ml-simple-clustering' {
2
+ export = simpleClustering;
3
+ function simpleClustering(dataMatrix: number[] | number[][], options?: OptionsSimpleClustering): number[][];
4
+ }
5
+ interface OptionsSimpleClustering {
6
+ threshold?: number;
7
+ out?: 'assignment' | 'indexes' | 'values';
8
+ }
@@ -0,0 +1,2 @@
1
+ "use strict";
2
+ //# sourceMappingURL=ml-simple-clustering.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ml-simple-clustering.js","sourceRoot":"","sources":["../src/ml-simple-clustering.ts"],"names":[],"mappings":""}
File without changes
File without changes
@@ -1 +1 @@
1
- {"version":3,"file":"NMRPeak1D.js","sourceRoot":"","sources":["../../src/types/NMRPeak1D.ts"],"names":[],"mappings":""}
1
+ {"version":3,"file":"NMRPeak1D.js","sourceRoot":"","sources":["../../src/peaks/NMRPeak1D.ts"],"names":[],"mappings":""}
@@ -1,5 +1,5 @@
1
1
  import { impurities } from '../constants/impurities';
2
- import type { NMRPeak1D } from '../types/NMRPeak1D';
2
+ import type { NMRPeak1D } from './NMRPeak1D';
3
3
  declare type Solvent = keyof typeof impurities;
4
4
  export interface OptionsPeaksFilterImpurities {
5
5
  /**
@@ -1 +1 @@
1
- {"version":3,"file":"peaksFilterImpurities.js","sourceRoot":"","sources":["../../src/peaks/peaksFilterImpurities.ts"],"names":[],"mappings":";;;AAAA,wDAAqD;AAIrD,MAAM,OAAO,GAAG,CAAC,SAAS,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;AA2B1C;;GAEG;AAEH,SAAgB,qBAAqB,CACnC,QAAqB,EACrB,UAAwC,EAAE;IAE1C,IAAI,EAAE,OAAO,EAAE,KAAK,GAAG,KAAK,EAAE,MAAM,GAAG,KAAK,EAAE,GAAG,OAAO,CAAC;IAEzD,IAAI,OAAO,EAAE;QACX,IAAI,OAAO,KAAK,UAAU;YAAE,OAAO,GAAG,MAAM,CAAC;QAC7C,IAAI,OAAO,KAAK,MAAM;YAAE,OAAO,GAAG,OAAO,CAAC;QAC1C,IAAI,iBAAiB,GAAG,uBAAU,CAAC,OAAO,CAAC,CAAC;QAC5C,KAAK,IAAI,QAAQ,IAAI,OAAO,EAAE;YAC5B,IAAI,cAAc,GAAG,iBAAiB,CAAC,QAAQ,CAAC,CAAC;YACjD,aAAa,CAAC,QAAQ,EAAE,cAAc,EAAE;gBACtC,KAAK;gBACL,MAAM;gBACN,IAAI,EAAE,QAAQ;aACf,CAAC,CAAC;SACJ;KACF;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AApBD,sDAoBC;AAED,SAAS,aAAa,CACpB,QAAqB,EACrB,QAA0B,EAC1B,OAA6B;IAE7B,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;IACtC,IAAI,CAAC,EAAE,SAAS,EAAE,UAAU,CAAC;IAC7B,IAAI,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC;IACxB,OAAO,CAAC,EAAE,EAAE;QACV,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC;QACpB,OAAO,CAAC,EAAE,EAAE;YACV,SAAS,GAAG,KAAK,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;YACtC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YACzD,IAAI,UAAU,GAAG,SAAS,EAAE;gBAC1B,0LAA0L;gBAC1L,IAAI,MAAM,EAAE;oBACV,QAAQ,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;iBACvB;qBAAM;oBACL,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,IAAI,CAAC;iBACzB;aACF;SACF;KACF;AACH,CAAC"}
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+ {"version":3,"file":"peaksFilterImpurities.js","sourceRoot":"","sources":["../../src/peaks/peaksFilterImpurities.ts"],"names":[],"mappings":";;;AAAA,wDAAqD;AAKrD,MAAM,OAAO,GAAG,CAAC,SAAS,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;AA2B1C;;GAEG;AAEH,SAAgB,qBAAqB,CACnC,QAAqB,EACrB,UAAwC,EAAE;IAE1C,IAAI,EAAE,OAAO,EAAE,KAAK,GAAG,KAAK,EAAE,MAAM,GAAG,KAAK,EAAE,GAAG,OAAO,CAAC;IAEzD,IAAI,OAAO,EAAE;QACX,IAAI,OAAO,KAAK,UAAU;YAAE,OAAO,GAAG,MAAM,CAAC;QAC7C,IAAI,OAAO,KAAK,MAAM;YAAE,OAAO,GAAG,OAAO,CAAC;QAC1C,IAAI,iBAAiB,GAAG,uBAAU,CAAC,OAAO,CAAC,CAAC;QAC5C,KAAK,IAAI,QAAQ,IAAI,OAAO,EAAE;YAC5B,IAAI,cAAc,GAAG,iBAAiB,CAAC,QAAQ,CAAC,CAAC;YACjD,aAAa,CAAC,QAAQ,EAAE,cAAc,EAAE;gBACtC,KAAK;gBACL,MAAM;gBACN,IAAI,EAAE,QAAQ;aACf,CAAC,CAAC;SACJ;KACF;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AApBD,sDAoBC;AAED,SAAS,aAAa,CACpB,QAAqB,EACrB,QAA0B,EAC1B,OAA6B;IAE7B,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;IACtC,IAAI,CAAC,EAAE,SAAS,EAAE,UAAU,CAAC;IAC7B,IAAI,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC;IACxB,OAAO,CAAC,EAAE,EAAE;QACV,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC;QACpB,OAAO,CAAC,EAAE,EAAE;YACV,SAAS,GAAG,KAAK,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;YACtC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YACzD,IAAI,UAAU,GAAG,SAAS,EAAE;gBAC1B,0LAA0L;gBAC1L,IAAI,MAAM,EAAE;oBACV,QAAQ,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;iBACvB;qBAAM;oBACL,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,IAAI,CAAC;iBACzB;aACF;SACF;KACF;AACH,CAAC"}
@@ -1,6 +1,6 @@
1
1
  import type { DataXY } from 'cheminfo-types';
2
- import type { NMRPeak1D } from '../types/NMRPeak1D';
3
- import type { NMRRange } from '../types/NMRRange';
2
+ import type { NMRRange } from '../xy/NMRRange';
3
+ import type { NMRPeak1D } from './NMRPeak1D';
4
4
  export interface OptionsPeaksToRanges {
5
5
  /**
6
6
  * Number of hydrogens or some number to normalize the integration data. If it's zero return the absolute integration value
@@ -1,10 +1,7 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
3
  exports.determineRealTop = void 0;
7
- const ml_levenberg_marquardt_1 = __importDefault(require("ml-levenberg-marquardt"));
4
+ const ml_levenberg_marquardt_1 = require("ml-levenberg-marquardt");
8
5
  const ml_peak_shape_generator_1 = require("ml-peak-shape-generator");
9
6
  const direction8X = [-1, -1, -1, 0, 0, 1, 1, 1];
10
7
  const direction8Y = [-1, 0, 1, -1, 1, -1, 0, 1];
@@ -96,7 +93,7 @@ function fitGaussian(data, options) {
96
93
  let initialValues = [newCol, newRow, z[newCol + newRow * 3], 0.2, 0.2];
97
94
  let gradientDifference = [1e-4, 1e-4, 1e-3, 1e-3, 1e-3];
98
95
  let func = paramGaussian2D(intervalX, intervalY, 3);
99
- let pFit = (0, ml_levenberg_marquardt_1.default)({ x: xAxis, y: z }, func, {
96
+ let pFit = (0, ml_levenberg_marquardt_1.levenbergMarquardt)({ x: xAxis, y: z }, func, {
100
97
  damping: 1.5,
101
98
  maxIterations: 100,
102
99
  errorTolerance: 1e-8,
@@ -1 +1 @@
1
- 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1
+ {"version":3,"file":"determineRealTop.js","sourceRoot":"","sources":["../../../src/peaks/util/determineRealTop.ts"],"names":[],"mappings":";;;AAAA,mEAA4D;AAE5D,qEAAqD;AAErD,MAAM,WAAW,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;AAChD,MAAM,WAAW,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;AAChD,MAAM,YAAY,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;AAC7E,MAAM,YAAY,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;AAI7E,SAAgB,gBAAgB,CAAC,KAAe,EAAE,OAAY;IAC5D,IAAI,EAAE,KAAK,EAAE,YAAY,EAAE,YAAY,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,OAAO,CAAC;IAC5E,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACrC,IAAI,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACpC,IAAI,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAEpC,IAAI,YAAY,GAAG,MAAM,GAAG,MAAM,GAAG,KAAK,CAAC;QAC3C,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,YAAY,CAAC,YAAY,EAAE;YAChD,MAAM;YACN,MAAM;YACN,KAAK;YACL,KAAK,EAAE,CAAC;SACT,CAAC,CAAC;QACH,YAAY,GAAG,KAAK;YAClB,CAAC,CAAC,KAAK;YACP,CAAC,CAAC,YAAY,CAAC,YAAY,EAAE;gBACzB,MAAM;gBACN,MAAM;gBACN,KAAK;gBACL,KAAK,EAAE,CAAC;aACT,CAAC,CAAC,KAAK,CAAC;QAEb,IAAI,kBAAkB,GAAG,WAAW,CAAC,YAAY,EAAE;YACjD,KAAK;YACL,KAAK,EAAE,YAAY;YACnB,IAAI;YACJ,IAAI;YACJ,IAAI;YACJ,IAAI;SACL,CAAC,CAAC;QAEH,KAAK,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,kBAAkB,CAAC,CAAC;KACxD;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAlCD,4CAkCC;AAED,SAAS,YAAY,CACnB,IAAU,EACV,OAAyE;IAEzE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC;IAC/C,IAAI,YAAY,GAAG,MAAM,GAAG,MAAM,GAAG,KAAK,CAAC;IAC3C,IAAI,CAAC,UAAU,EAAE,UAAU,CAAC,GAC1B,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;IAExE,IAAI,KAAK,GAAG,KAAK,CAAC;IAClB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC1C,IAAI,CAAC,GAAG,MAAM,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QAC/B,IAAI,CAAC,GAAG,MAAM,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QAC/B,IAAI,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,IAAI,IAAI,CAAC,YAAY,CAAC,EAAE;YAC7C,KAAK,GAAG,IAAI,CAAC;YACb,IAAI,cAAc,GAAG,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC;YACnC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBAC3C,IAAI,EAAE,GAAG,CAAC,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;gBAC5B,IAAI,EAAE,GAAG,CAAC,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;gBAC5B,IAAI,IAAI,CAAC,EAAE,GAAG,EAAE,GAAG,KAAK,CAAC,GAAG,IAAI,CAAC,cAAc,CAAC,EAAE;oBAChD,KAAK,GAAG,KAAK,CAAC;oBACd,MAAM;iBACP;aACF;YACD,IAAI,KAAK,EAAE;gBACT,YAAY,GAAG,cAAc,CAAC;aAC/B;SACF;KACF;IAED,OAAO,EAAE,KAAK,EAAE,YAAY,EAAE,KAAK,EAAE,CAAC;AACxC,CAAC;AAED,SAAS,WAAW,CAClB,IAA6B,EAC7B,OAOC;IAED,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,OAAO,CAAC;IAEvD,IAAI,KAAK,GAAG,IAAI,CAAC,MAAM,GAAG,KAAK,CAAC;IAEhC,IAAI,SAAS,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;IAC5C,IAAI,SAAS,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;IAE5C,IAAI,GAAG,GAAG,KAAK,GAAG,KAAK,CAAC;IACxB,IAAI,GAAG,GAAG,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,KAAK,CAAC;IAEhC,IAAI,MAAM,GAAG,CAAC,CAAC;IACf,IAAI,MAAM,GAAG,CAAC,CAAC;IAEf,IAAI,GAAG,GAAG,MAAM,CAAC,gBAAgB,CAAC;IAClC,IAAI,CAAC,GAAG,IAAI,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAC1C,IAAI,KAAK,GAAG,IAAI,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACnC,KAAK,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,KAAK,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE;YAC7C,IAAI,KAAK,GAAG,IAAI,CAAC,GAAG,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC;YAC9C,IAAI,GAAG,GAAG,KAAK;gBAAE,GAAG,GAAG,KAAK,CAAC;YAC7B,CAAC,CAAC,MAAM,GAAG,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC;SAC1C;KACF;IAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,CAAC,EAAE;QAAE,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC;IAE/C,IAAI,SAAS,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;IACpD,IAAI,SAAS,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;IAC7D,IAAI,aAAa,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;IACvE,IAAI,kBAAkB,GAAG,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;IACxD,IAAI,IAAI,GAAG,eAAe,CAAC,SAAS,EAAE,SAAS,EAAE,CAAC,CAAC,CAAC;IAEpD,IAAI,IAAI,GAAG,IAAA,2CAAkB,EAAC,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,IAAI,EAAE;QACtD,OAAO,EAAE,GAAG;QACZ,aAAa,EAAE,GAAG;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa;QACb,kBAAkB;QAClB,SAAS;QACT,SAAS;KACV,CAAC,CAAC,eAAe,CAAC;IAEnB,OAAO;QACL,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC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@@ -1,5 +1,5 @@
1
- import type { MakeMandatory } from '../../types/MakeMandatory';
2
- import type { NMRPeak1D } from '../../types/NMRPeak1D';
1
+ import type { MakeMandatory } from '../../utilities/MakeMandatory';
2
+ import type { NMRPeak1D } from '../NMRPeak1D';
3
3
  export interface JAxisKeys {
4
4
  [key: string]: string;
5
5
  jAxis: string;
@@ -1,2 +1,2 @@
1
- import type { NMRRange } from '../../types/NMRRange';
1
+ import type { NMRRange } from '../../xy/NMRRange';
2
2
  export declare function joinRanges(ranges: NMRRange[]): NMRRange[];
@@ -1,4 +1,4 @@
1
1
  import type { Peak2D } from 'ml-matrix-peaks-finder';
2
- import type { NMRSignal2D } from '../../types/NMRSignal2D';
2
+ import type { NMRSignal2D } from '../../xyz/NMRSignal2D';
3
3
  export declare function clean(peaks: Peak2D[], threshold: number): Peak2D[];
4
4
  export declare function enhanceSymmetry(signals: NMRSignal2D[]): any[];
File without changes
File without changes
@@ -0,0 +1 @@
1
+ {"version":3,"file":"dataStructure.js","sourceRoot":"","sources":["../../src/prediction/dataStructure.ts"],"names":[],"mappings":""}
@@ -1,7 +1,7 @@
1
1
  import type { Molecule } from 'openchemlib';
2
- import type { Prediction1D } from '../types/prediction1D';
3
2
  import { PredictCarbonOptions } from './predictCarbon';
4
3
  import { PredictProtonOptions } from './predictProton';
4
+ import type { Prediction1D } from './prediction1D';
5
5
  import type { Predictor } from './utils/predict2D';
6
6
  export interface PredictAllOptions {
7
7
  /**
@@ -1 +1 @@
1
- {"version":3,"file":"predictAll.js","sourceRoot":"","sources":["../../src/prediction/predictAll.ts"],"names":[],"mappings":";;;AAIA,+CAA4C;AAC5C,mDAAsE;AACtE,+CAA4C;AAC5C,+CAA4C;AAC5C,mDAAsE;AACtE,2DAAwD;AAmDxD;;;GAGG;AAEI,KAAK,UAAU,UAAU,CAC9B,QAAkB,EAClB,UAA6B,EAAE;IAE/B,IAAI,EACF,IAAI,GAAG,GAAG,EACV,EAAE,GAAG,GAAG,EACR,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,CAAC,EAAE,6BAAa,EAAE,EAClD,WAAW,EACX,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,EAClC,cAAc,GAAG,EAAE,GACpB,GAAG,OAAO,CAAC;IAEZ,MAAM,WAAW,GAAG,MAAM,IAAA,+BAAc,EACtC,IAAI,EACJ,QAAQ,EACR,cAAc,EACd,SAAS,EACT,WAAW,CACZ,CAAC;IAEF,MAAM,WAAW,GAAG,MAAM,IAAA,+BAAc,EACtC,EAAE,EACF,QAAQ,EACR,cAAc,EACd,SAAS,EACT,WAAW,CACZ,CAAC;IAEF,IAAI,CAAC,WAAW,IAAI,CAAC,WAAW,EAAE;QAChC,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,CAAC;KACnD;IAED,WAAW,GAAG;QACZ,CAAC,EAAE,WAAW;QACd,CAAC,EAAE,WAAW;KACf,CAAC;IAEF,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,WAAW,CAAC;IAExC,MAAM,OAAO,GAAQ;QACnB,MAAM,EAAE,WAAW,CAAC,CAAC;QACrB,MAAM,EAAE,WAAW,CAAC,CAAC;KACtB,CAAC;IAEF,OAAO,CAAC,IAAI,GAAG,MAAM,IAAA,yBAAW,EAAC,QAAQ,EAAE;QACzC,WAAW;QACX,YAAY;KACb,CAAC,CAAC;IACH,OAAO,CAAC,IAAI,GAAG,MAAM,IAAA,yBAAW,EAAC,QAAQ,EAAE;QACzC,WAAW;QACX,YAAY;KACb,CAAC,CAAC;IACH,OAAO,CAAC,IAAI,GAAG,MAAM,IAAA,yBAAW,EAAC,QAAQ,EAAE;QACzC,WAAW;QACX,YAAY;KACb,CAAC,CAAC;IAEH,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE;QACzB,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC;QAC5B,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC;KAC5B;IAED,OAAO;QACL,OAAO;QACP,MAAM;QACN,GAAG,OAAO;KACX,CAAC;AACJ,CAAC;AApED,gCAoEC"}
1
+ {"version":3,"file":"predictAll.js","sourceRoot":"","sources":["../../src/prediction/predictAll.ts"],"names":[],"mappings":";;;AAEA,+CAA4C;AAC5C,mDAAsE;AACtE,+CAA4C;AAC5C,+CAA4C;AAC5C,mDAAsE;AAEtE,2DAAwD;AAmDxD;;;GAGG;AAEI,KAAK,UAAU,UAAU,CAC9B,QAAkB,EAClB,UAA6B,EAAE;IAE/B,IAAI,EACF,IAAI,GAAG,GAAG,EACV,EAAE,GAAG,GAAG,EACR,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,CAAC,EAAE,6BAAa,EAAE,EAClD,WAAW,EACX,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,EAClC,cAAc,GAAG,EAAE,GACpB,GAAG,OAAO,CAAC;IAEZ,MAAM,WAAW,GAAG,MAAM,IAAA,+BAAc,EACtC,IAAI,EACJ,QAAQ,EACR,cAAc,EACd,SAAS,EACT,WAAW,CACZ,CAAC;IAEF,MAAM,WAAW,GAAG,MAAM,IAAA,+BAAc,EACtC,EAAE,EACF,QAAQ,EACR,cAAc,EACd,SAAS,EACT,WAAW,CACZ,CAAC;IAEF,IAAI,CAAC,WAAW,IAAI,CAAC,WAAW,EAAE;QAChC,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,CAAC;KACnD;IAED,WAAW,GAAG;QACZ,CAAC,EAAE,WAAW;QACd,CAAC,EAAE,WAAW;KACf,CAAC;IAEF,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,WAAW,CAAC;IAExC,MAAM,OAAO,GAAQ;QACnB,MAAM,EAAE,WAAW,CAAC,CAAC;QACrB,MAAM,EAAE,WAAW,CAAC,CAAC;KACtB,CAAC;IAEF,OAAO,CAAC,IAAI,GAAG,MAAM,IAAA,yBAAW,EAAC,QAAQ,EAAE;QACzC,WAAW;QACX,YAAY;KACb,CAAC,CAAC;IACH,OAAO,CAAC,IAAI,GAAG,MAAM,IAAA,yBAAW,EAAC,QAAQ,EAAE;QACzC,WAAW;QACX,YAAY;KACb,CAAC,CAAC;IACH,OAAO,CAAC,IAAI,GAAG,MAAM,IAAA,yBAAW,EAAC,QAAQ,EAAE;QACzC,WAAW;QACX,YAAY;KACb,CAAC,CAAC;IAEH,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE;QACzB,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC;QAC5B,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC;KAC5B;IAED,OAAO;QACL,OAAO;QACP,MAAM;QACN,GAAG,OAAO;KACX,CAAC;AACJ,CAAC;AApED,gCAoEC"}
@@ -1,6 +1,6 @@
1
1
  import { Molecule } from 'openchemlib';
2
- import type { Prediction1D } from '../types/prediction1D';
3
2
  import { PredictProtonOptions } from './predictProton';
3
+ import type { Prediction1D } from './prediction1D';
4
4
  import { Predictor } from './utils/predict2D';
5
5
  export interface PredictCOSYOptions {
6
6
  /**
@@ -1 +1 @@
1
- {"version":3,"file":"predictCOSY.js","sourceRoot":"","sources":["../../src/prediction/predictCOSY.ts"],"names":[],"mappings":";;;AAIA,mDAAsE;AACtE,iDAAyD;AA4CzD;;;GAGG;AAEI,KAAK,UAAU,WAAW,CAC/B,QAAkB,EAClB,UAA8B,EAAE;IAEhC,IAAI,EACF,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,CAAC,EACb,WAAW,EACX,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,EAChC,cAAc,EACd,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,EAClC,eAAe,GAAG,IAAI,GACvB,GAAG,OAAO,CAAC;IAEZ,OAAO,IAAA,qBAAS,EAAC,QAAQ,EAAE;QACzB,IAAI,EAAE,GAAG;QACT,EAAE,EAAE,GAAG;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,YAAY;QACZ,WAAW;QACX,eAAe;QACf,cAAc;KACf,CAAC,CAAC;AACL,CAAC;AAzBD,kCAyBC"}
1
+ {"version":3,"file":"predictCOSY.js","sourceRoot":"","sources":["../../src/prediction/predictCOSY.ts"],"names":[],"mappings":";;;AAEA,mDAAsE;AAEtE,iDAAyD;AA4CzD;;;GAGG;AAEI,KAAK,UAAU,WAAW,CAC/B,QAAkB,EAClB,UAA8B,EAAE;IAEhC,IAAI,EACF,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,CAAC,EACb,WAAW,EACX,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,EAChC,cAAc,EACd,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,EAClC,eAAe,GAAG,IAAI,GACvB,GAAG,OAAO,CAAC;IAEZ,OAAO,IAAA,qBAAS,EAAC,QAAQ,EAAE;QACzB,IAAI,EAAE,GAAG;QACT,EAAE,EAAE,GAAG;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,YAAY;QACZ,WAAW;QACX,eAAe;QACf,cAAc;KACf,CAAC,CAAC;AACL,CAAC;AAzBD,kCAyBC"}
@@ -1,6 +1,6 @@
1
1
  import type { Molecule } from 'openchemlib';
2
- import type { DataBaseStructure } from '../types/dataStructure';
3
- import type { Prediction1D } from '../types/prediction1D';
2
+ import type { DataBaseStructure } from './dataStructure';
3
+ import type { Prediction1D } from './prediction1D';
4
4
  export interface PredictCarbonOptions {
5
5
  /**
6
6
  * URL pointing to a database in json format
@@ -1 +1 @@
1
- {"version":3,"file":"predictCarbon.js","sourceRoot":"","sources":["../../src/prediction/predictCarbon.ts"],"names":[],"mappings":";;;;;;AAAA,8DAAgC;AAGhC,gEAA6D;AAM7D,6DAA0D;AAC1D,iEAA8D;AAC9D,mEAAgE;AAChE,qDAA8D;AAE9D,MAAM,KAAK,GAAyC,EAAE,CAAC;AAEvD,KAAK,UAAU,MAAM,CACnB,GAAG,GAAG,oEAAoE;IAE1E,IAAI,KAAK,CAAC,GAAG,CAAC,EAAE;QACd,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC;KACnB;IACD,MAAM,QAAQ,GAAG,MAAM,IAAA,qBAAK,EAAC,GAAG,CAAC,CAAC;IAClC,MAAM,QAAQ,GAAsB,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;IAC1D,KAAK,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;IACtB,OAAO,QAAQ,CAAC;AAClB,CAAC;AA8BD,SAAS,mBAAmB,CAC1B,MAAmB;IAEnB,IAAI,CAAC,MAAM,CAAC,KAAK;QAAE,MAAM,IAAI,KAAK,CAAC,oBAAoB,CAAC,CAAC;IACzD,IAAI,CAAC,MAAM,CAAC,MAAM;QAAE,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAC;IAC3D,IAAI,CAAC,MAAM,CAAC,OAAO;QAAE,MAAM,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAC;AAC/D,CAAC;AACD;;;GAGG;AAEI,KAAK,UAAU,aAAa,CACjC,QAAkB,EAClB,UAAgC,EAAE;IAElC,IAAI,EAAE,GAAG,EAAE,QAAQ,EAAE,aAAa,EAAE,GAAG,OAAO,CAAC;IAE/C,IAAI,aAAa,EAAE;QACjB,OAAO,IAAA,iCAAe,EAAC,QAAQ,EAAE,EAAE,aAAa,EAAE,CAAC,CAAC;KACrD;IAED,IAAI,CAAC,QAAQ;QAAE,QAAQ,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,CAAC;IAE5C,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAC;KAC5C;IAED,MAAM,QAAQ,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;IAErC,IAAI,EAAE,aAAa,GAAG,QAAQ,EAAE,GAAG,OAAO,CAAC;IAE3C,IAAI,aAAa,GAAG,QAAQ;QAAE,aAAa,GAAG,QAAQ,CAAC;IAEvD,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,IAAA,uCAAkB,EACjE,QAAQ,EACR;QACE,aAAa;KACd,CACF,CAAC;IAEF,IAAI,WAAW,GAAG,IAAA,yBAAW,EAAC,YAAY,EAAE,QAAQ,EAAE;QACpD,aAAa;KACd,CAAC,CAAC;IAEH,MAAM,OAAO,GAAG,aAAa,CAAC,WAAW,CAAC,CAAC;IAC3C,MAAM,aAAa,GAAG,iBAAiB,CAAC,OAAO,CAAC,CAAC;IACjD,OAAO;QACL,OAAO;QACP,OAAO,EAAE,KAAK;QACd,MAAM,EAAE,IAAA,qCAAiB,EAAC,aAAa,CAAC;QACxC,aAAa;QACb,OAAO;QACP,MAAM,EAAE,IAAA,iCAAe,EAAC,aAAa,CAAC;QACtC,QAAQ;KACT,CAAC;AACJ,CAAC;AA5CD,sCA4CC;AAED,SAAS,aAAa,CAAC,WAAyB;IAC9C,IAAI,OAAO,GAAG,EAAE,CAAC;IACjB,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE;QACpC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,GAAG,UAAU,CAAC;QAChE,MAAM,MAAM,GAAG;YACb,KAAK,EAAE,KAAK,IAAI,GAAG;YACnB,KAAK;YACL,MAAM,EAAE,MAAM;YACd,YAAY,EAAE,GAAG;YACjB,OAAO;YACP,SAAS;YACT,EAAE,EAAE,EAAE;SACP,CAAC;QACF,OAAO,CAAC,IAAI,CAAC,MAAqB,CAAC,CAAC;KACrC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,SAAS,iBAAiB,CAAC,OAAsB;IAC/C,IAAI,aAAa,GAA8C,EAAE,CAAC;IAClE,KAAK,IAAI,MAAM,IAAI,OAAO,EAAE;QAC1B,mBAAmB,CAAC,MAAM,CAAC,CAAC;QAC5B,IAAI,KAAK,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAI,CAAC,aAAa,CAAC,KAAK,CAAC,EAAE;YACzB,aAAa,CAAC,KAAK,CAAC,GAAG,IAAI,CAAC,KAAK,CAC/B,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CACG,CAAC;SAC7B;aAAM;YACL,aAAa,CAAC,KAAK,CAAC,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC;YAC/C,aAAa,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;SAClD;KACF;IACD,OAAO,MAAM,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC;AACtC,CAAC"}
1
+ {"version":3,"file":"predictCarbon.js","sourceRoot":"","sources":["../../src/prediction/predictCarbon.ts"],"names":[],"mappings":";;;;;;AAAA,8DAAgC;AAIhC,gEAA6D;AAK7D,6DAA0D;AAC1D,iEAA8D;AAC9D,mEAAgE;AAChE,qDAA8D;AAE9D,MAAM,KAAK,GAAyC,EAAE,CAAC;AAEvD,KAAK,UAAU,MAAM,CACnB,GAAG,GAAG,oEAAoE;IAE1E,IAAI,KAAK,CAAC,GAAG,CAAC,EAAE;QACd,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC;KACnB;IACD,MAAM,QAAQ,GAAG,MAAM,IAAA,qBAAK,EAAC,GAAG,CAAC,CAAC;IAClC,MAAM,QAAQ,GAAsB,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;IAC1D,KAAK,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;IACtB,OAAO,QAAQ,CAAC;AAClB,CAAC;AA8BD,SAAS,mBAAmB,CAC1B,MAAmB;IAEnB,IAAI,CAAC,MAAM,CAAC,KAAK;QAAE,MAAM,IAAI,KAAK,CAAC,oBAAoB,CAAC,CAAC;IACzD,IAAI,CAAC,MAAM,CAAC,MAAM;QAAE,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAC;IAC3D,IAAI,CAAC,MAAM,CAAC,OAAO;QAAE,MAAM,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAC;AAC/D,CAAC;AACD;;;GAGG;AAEI,KAAK,UAAU,aAAa,CACjC,QAAkB,EAClB,UAAgC,EAAE;IAElC,IAAI,EAAE,GAAG,EAAE,QAAQ,EAAE,aAAa,EAAE,GAAG,OAAO,CAAC;IAE/C,IAAI,aAAa,EAAE;QACjB,OAAO,IAAA,iCAAe,EAAC,QAAQ,EAAE,EAAE,aAAa,EAAE,CAAC,CAAC;KACrD;IAED,IAAI,CAAC,QAAQ;QAAE,QAAQ,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,CAAC;IAE5C,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAC;KAC5C;IAED,MAAM,QAAQ,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;IAErC,IAAI,EAAE,aAAa,GAAG,QAAQ,EAAE,GAAG,OAAO,CAAC;IAE3C,IAAI,aAAa,GAAG,QAAQ;QAAE,aAAa,GAAG,QAAQ,CAAC;IAEvD,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,IAAA,uCAAkB,EACjE,QAAQ,EACR;QACE,aAAa;KACd,CACF,CAAC;IAEF,IAAI,WAAW,GAAG,IAAA,yBAAW,EAAC,YAAY,EAAE,QAAQ,EAAE;QACpD,aAAa;KACd,CAAC,CAAC;IAEH,MAAM,OAAO,GAAG,aAAa,CAAC,WAAW,CAAC,CAAC;IAC3C,MAAM,aAAa,GAAG,iBAAiB,CAAC,OAAO,CAAC,CAAC;IACjD,OAAO;QACL,OAAO;QACP,OAAO,EAAE,KAAK;QACd,MAAM,EAAE,IAAA,qCAAiB,EAAC,aAAa,CAAC;QACxC,aAAa;QACb,OAAO;QACP,MAAM,EAAE,IAAA,iCAAe,EAAC,aAAa,CAAC;QACtC,QAAQ;KACT,CAAC;AACJ,CAAC;AA5CD,sCA4CC;AAED,SAAS,aAAa,CAAC,WAAyB;IAC9C,IAAI,OAAO,GAAG,EAAE,CAAC;IACjB,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE;QACpC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,GAAG,UAAU,CAAC;QAChE,MAAM,MAAM,GAAG;YACb,KAAK,EAAE,KAAK,IAAI,GAAG;YACnB,KAAK;YACL,MAAM,EAAE,MAAM;YACd,YAAY,EAAE,GAAG;YACjB,OAAO;YACP,SAAS;YACT,EAAE,EAAE,EAAE;SACP,CAAC;QACF,OAAO,CAAC,IAAI,CAAC,MAAqB,CAAC,CAAC;KACrC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,SAAS,iBAAiB,CAAC,OAAsB;IAC/C,IAAI,aAAa,GAA8C,EAAE,CAAC;IAClE,KAAK,IAAI,MAAM,IAAI,OAAO,EAAE;QAC1B,mBAAmB,CAAC,MAAM,CAAC,CAAC;QAC5B,IAAI,KAAK,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAI,CAAC,aAAa,CAAC,KAAK,CAAC,EAAE;YACzB,aAAa,CAAC,KAAK,CAAC,GAAG,IAAI,CAAC,KAAK,CAC/B,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CACG,CAAC;SAC7B;aAAM;YACL,aAAa,CAAC,KAAK,CAAC,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC;YAC/C,aAAa,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;SAClD;KACF;IACD,OAAO,MAAM,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC;AACtC,CAAC"}
@@ -1,7 +1,7 @@
1
1
  import { Molecule } from 'openchemlib';
2
- import type { Prediction1D } from '../types/prediction1D';
3
2
  import type { PredictCarbonOptions } from './predictCarbon';
4
3
  import type { PredictProtonOptions } from './predictProton';
4
+ import type { Prediction1D } from './prediction1D';
5
5
  import type { Predictor } from './utils/predict2D';
6
6
  /**
7
7
  * Generate the correlation bidimensional nmr peaks based on the number of bonds between a pair of atoms
@@ -1 +1 @@
1
- {"version":3,"file":"predictHMBC.js","sourceRoot":"","sources":["../../src/prediction/predictHMBC.ts"],"names":[],"mappings":";;;AAIA,mDAAgD;AAEhD,mDAAgD;AAEhD,iDAA8C;AA+CvC,KAAK,UAAU,WAAW,CAC/B,QAAkB,EAClB,UAA8B,EAAE;IAEhC,IAAI,EACF,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,CAAC,EAAE,6BAAa,EAAE,EAClD,cAAc,EACd,WAAW,EACX,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,GACnC,GAAG,OAAO,CAAC;IAEZ,OAAO,IAAA,qBAAS,EAAC,QAAQ,EAAE;QACzB,IAAI,EAAE,GAAG;QACT,EAAE,EAAE,GAAG;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,WAAW;QACX,cAAc;QACd,YAAY;KACb,CAAC,CAAC;AACL,CAAC;AAvBD,kCAuBC"}
1
+ {"version":3,"file":"predictHMBC.js","sourceRoot":"","sources":["../../src/prediction/predictHMBC.ts"],"names":[],"mappings":";;;AAEA,mDAAgD;AAEhD,mDAAgD;AAGhD,iDAA8C;AA+CvC,KAAK,UAAU,WAAW,CAC/B,QAAkB,EAClB,UAA8B,EAAE;IAEhC,IAAI,EACF,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,CAAC,EAAE,6BAAa,EAAE,EAClD,cAAc,EACd,WAAW,EACX,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,GACnC,GAAG,OAAO,CAAC;IAEZ,OAAO,IAAA,qBAAS,EAAC,QAAQ,EAAE;QACzB,IAAI,EAAE,GAAG;QACT,EAAE,EAAE,GAAG;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,WAAW;QACX,cAAc;QACd,YAAY;KACb,CAAC,CAAC;AACL,CAAC;AAvBD,kCAuBC"}
@@ -1,7 +1,7 @@
1
1
  import { Molecule } from 'openchemlib';
2
- import type { Prediction1D } from '../types/prediction1D';
3
2
  import { PredictCarbonOptions } from './predictCarbon';
4
3
  import { PredictProtonOptions } from './predictProton';
4
+ import type { Prediction1D } from './prediction1D';
5
5
  import { Predictor } from './utils/predict2D';
6
6
  export interface PredictHSQCOptions {
7
7
  /**
@@ -1 +1 @@
1
- {"version":3,"file":"predictHSQC.js","sourceRoot":"","sources":["../../src/prediction/predictHSQC.ts"],"names":[],"mappings":";;;AAIA,mDAAsE;AACtE,mDAAsE;AACtE,iDAAyD;AAwCzD;;;GAGG;AAEI,KAAK,UAAU,WAAW,CAC/B,QAAkB,EAClB,UAA8B,EAAE;IAEhC,IAAI,EACF,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,CAAC,EAAE,6BAAa,EAAE,EAClD,WAAW,EACX,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,EAClC,cAAc,GACf,GAAG,OAAO,CAAC;IAEZ,OAAO,IAAA,qBAAS,EAAC,QAAQ,EAAE;QACzB,IAAI,EAAE,GAAG;QACT,EAAE,EAAE,GAAG;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,WAAW;QACX,cAAc;QACd,YAAY;KACb,CAAC,CAAC;AACL,CAAC;AAvBD,kCAuBC"}
1
+ {"version":3,"file":"predictHSQC.js","sourceRoot":"","sources":["../../src/prediction/predictHSQC.ts"],"names":[],"mappings":";;;AAEA,mDAAsE;AACtE,mDAAsE;AAEtE,iDAAyD;AAwCzD;;;GAGG;AAEI,KAAK,UAAU,WAAW,CAC/B,QAAkB,EAClB,UAA8B,EAAE;IAEhC,IAAI,EACF,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,CAAC,EACb,SAAS,GAAG,EAAE,CAAC,EAAE,6BAAa,EAAE,CAAC,EAAE,6BAAa,EAAE,EAClD,WAAW,EACX,YAAY,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,EAClC,cAAc,GACf,GAAG,OAAO,CAAC;IAEZ,OAAO,IAAA,qBAAS,EAAC,QAAQ,EAAE;QACzB,IAAI,EAAE,GAAG;QACT,EAAE,EAAE,GAAG;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,WAAW;QACX,cAAc;QACd,YAAY;KACb,CAAC,CAAC;AACL,CAAC;AAvBD,kCAuBC"}
@@ -1,5 +1,5 @@
1
1
  import type { Molecule } from 'openchemlib';
2
- import type { Prediction1D } from '../types/prediction1D';
2
+ import type { Prediction1D } from './prediction1D';
3
3
  /**
4
4
  * Makes a prediction using proton.
5
5
  * @returns {Promise<object>} - object with molfile, diaIDs, signals, joined signals by diaIDs and ranges.
@@ -24,7 +24,7 @@ async function predictProton(molecule, options = {}) {
24
24
  formData.append('molfile', molfile);
25
25
  const response = await (0, cross_fetch_1.default)('https://www.nmrdb.org/service/predictor', {
26
26
  method: 'POST',
27
- //@ts-expect-error
27
+ // @ts-expect-error RequestInit type does not include FormData.
28
28
  body: formData,
29
29
  });
30
30
  result = await response.text();
@@ -1 +1 @@
1
- {"version":3,"file":"predictProton.js","sourceRoot":"","sources":["../../src/prediction/predictProton.ts"],"names":[],"mappings":";;;;;;AAAA,8DAAgC;AAChC,0DAAiC;AAEjC,yDAI2B;AAE3B,wDAAqD;AACrD,gEAA6D;AAkBtD,KAAK,UAAU,aAAa,CACjC,QAAkB,EAClB,UAAgC,EAAE;IAElC,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC;IAC1B,QAAQ,GAAG,QAAQ,CAAC,cAAc,EAAE,CAAC;IACrC,QAAQ,CAAC,oBAAoB,EAAE,CAAC;IAChC,IAAA,qDAAiC,EAAC,QAAQ,CAAC,CAAC;IAC5C,MAAM,OAAO,GAAG,QAAQ,CAAC,SAAS,EAAE,CAAC;IAErC,IAAI,MAAM,CAAC;IACX,IAAI,KAAK,EAAE;QACT,MAAM,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC;KACzB;IACD,IAAI,MAAM,KAAK,SAAS,EAAE;QACxB,MAAM,QAAQ,GAAG,IAAI,mBAAQ,EAAE,CAAC;QAChC,QAAQ,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QACpC,MAAM,QAAQ,GAAG,MAAM,IAAA,qBAAK,EAAC,yCAAyC,EAAE;YACtE,MAAM,EAAE,MAAM;YACd,kBAAkB;YAClB,IAAI,EAAE,QAAQ;SACf,CAAC,CAAC;QACH,MAAM,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QAC/B,IAAI,KAAK,EAAE;YACT,KAAK,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;SACxB;KACF;IAED,MAAM,MAAM,GAAG,IAAA,4CAAwB,EAAC,QAAQ,CAAC,CAAC;IAClD,MAAM,OAAO,GAAG,YAAY,CAAC,MAAM,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;IACvD,MAAM,aAAa,GAAG,IAAA,yBAAW,EAAC,OAAO,CAAC,CAAC;IAC3C,OAAO;QACL,OAAO;QACP,MAAM;QACN,OAAO,EAAE,IAAI;QACb,aAAa;QACb,OAAO;QACP,MAAM,EAAE,IAAA,iCAAe,EAAC,aAAa,CAAC;QACtC,QAAQ;KACT,CAAC;AACJ,CAAC;AAxCD,sCAwCC;AAED,SAAS,YAAY,CACnB,MAAc,EACd,QAAkB,EAClB,MAAgB;IAEhB,IAAI,QAAQ,CAAC,WAAW,EAAE,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IAC5C,IAAI,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;QAC1B,MAAM,KAAK,CAAC,wBAAwB,MAAM,EAAE,CAAC,CAAC;KAC/C;IACD,IAAI,cAAc,GAAG,IAAA,yCAAqB,EAAC,QAAQ,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;IAC3E,IAAI,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,CAAC;IACtD,IAAI,OAAO,GAAG,EAAE,CAAC;IACjB,KAAK,IAAI,IAAI,IAAI,KAAK,EAAE;QACtB,IAAI,MAAM,GAAa,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QACxC,IAAI,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAChC,IAAI,IAAI,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACjC,IAAI,MAAM,GAAgB;YACxB,KAAK,EAAE,CAAC,IAAI,CAAC;YACb,MAAM,EAAE,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;YACtB,OAAO,EAAE,CAAC;YACV,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;YACxB,EAAE,EAAE,EAAE;SACP,CAAC;QAEF,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE;YACd,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAC;SACvD;QACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC5C,IAAI,MAAM,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YACtC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC;gBACb,QAAQ,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;gBAClC,KAAK,EAAE,CAAC,MAAM,CAAC;gBACf,MAAM,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;gBACxB,YAAY,EAAE,GAAG;gBACjB,UAAU,EAAE,cAAc,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;aACzC,CAAC,CAAC;YACH,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC;SACnD;QACD,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;KACtB;IACD,OAAO,OAAO,CAAC;AACjB,CAAC"}
1
+ {"version":3,"file":"predictProton.js","sourceRoot":"","sources":["../../src/prediction/predictProton.ts"],"names":[],"mappings":";;;;;;AAAA,8DAAgC;AAChC,0DAAiC;AAEjC,yDAI2B;AAG3B,wDAAqD;AACrD,gEAA6D;AAkBtD,KAAK,UAAU,aAAa,CACjC,QAAkB,EAClB,UAAgC,EAAE;IAElC,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC;IAC1B,QAAQ,GAAG,QAAQ,CAAC,cAAc,EAAE,CAAC;IACrC,QAAQ,CAAC,oBAAoB,EAAE,CAAC;IAChC,IAAA,qDAAiC,EAAC,QAAQ,CAAC,CAAC;IAC5C,MAAM,OAAO,GAAG,QAAQ,CAAC,SAAS,EAAE,CAAC;IAErC,IAAI,MAAM,CAAC;IACX,IAAI,KAAK,EAAE;QACT,MAAM,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC;KACzB;IACD,IAAI,MAAM,KAAK,SAAS,EAAE;QACxB,MAAM,QAAQ,GAAG,IAAI,mBAAQ,EAAE,CAAC;QAChC,QAAQ,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QACpC,MAAM,QAAQ,GAAG,MAAM,IAAA,qBAAK,EAAC,yCAAyC,EAAE;YACtE,MAAM,EAAE,MAAM;YACd,+DAA+D;YAC/D,IAAI,EAAE,QAAQ;SACf,CAAC,CAAC;QACH,MAAM,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QAC/B,IAAI,KAAK,EAAE;YACT,KAAK,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;SACxB;KACF;IAED,MAAM,MAAM,GAAG,IAAA,4CAAwB,EAAC,QAAQ,CAAC,CAAC;IAClD,MAAM,OAAO,GAAG,YAAY,CAAC,MAAM,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;IACvD,MAAM,aAAa,GAAG,IAAA,yBAAW,EAAC,OAAO,CAAC,CAAC;IAC3C,OAAO;QACL,OAAO;QACP,MAAM;QACN,OAAO,EAAE,IAAI;QACb,aAAa;QACb,OAAO;QACP,MAAM,EAAE,IAAA,iCAAe,EAAC,aAAa,CAAC;QACtC,QAAQ;KACT,CAAC;AACJ,CAAC;AAxCD,sCAwCC;AAED,SAAS,YAAY,CACnB,MAAc,EACd,QAAkB,EAClB,MAAgB;IAEhB,IAAI,QAAQ,CAAC,WAAW,EAAE,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IAC5C,IAAI,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;QAC1B,MAAM,KAAK,CAAC,wBAAwB,MAAM,EAAE,CAAC,CAAC;KAC/C;IACD,IAAI,cAAc,GAAG,IAAA,yCAAqB,EAAC,QAAQ,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;IAC3E,IAAI,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,CAAC;IACtD,IAAI,OAAO,GAAG,EAAE,CAAC;IACjB,KAAK,IAAI,IAAI,IAAI,KAAK,EAAE;QACtB,IAAI,MAAM,GAAa,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QACxC,IAAI,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAChC,IAAI,IAAI,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACjC,IAAI,MAAM,GAAgB;YACxB,KAAK,EAAE,CAAC,IAAI,CAAC;YACb,MAAM,EAAE,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;YACtB,OAAO,EAAE,CAAC;YACV,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;YACxB,EAAE,EAAE,EAAE;SACP,CAAC;QAEF,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE;YACd,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAC;SACvD;QACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC5C,IAAI,MAAM,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YACtC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC;gBACb,QAAQ,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;gBAClC,KAAK,EAAE,CAAC,MAAM,CAAC;gBACf,MAAM,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;gBACxB,YAAY,EAAE,GAAG;gBACjB,UAAU,EAAE,cAAc,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;aACzC,CAAC,CAAC;YACH,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC;SACnD;QACD,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;KACtB;IACD,OAAO,OAAO,CAAC;AACjB,CAAC"}
@@ -1,6 +1,6 @@
1
1
  import type { Molecule } from 'openchemlib';
2
- import type { NMRRange } from './NMRRange';
3
- import type { NMRSignal1D } from './NMRSignal1D';
2
+ import type { NMRSignal1D } from '../signals/NMRSignal1D';
3
+ import type { NMRRange } from '../xy/NMRRange';
4
4
  export interface Prediction1D {
5
5
  molfile: string;
6
6
  diaIDs: string[];
File without changes
@@ -0,0 +1 @@
1
+ {"version":3,"file":"prediction1D.js","sourceRoot":"","sources":["../../src/prediction/prediction1D.ts"],"names":[],"mappings":""}
@@ -1,5 +1,5 @@
1
1
  import { Molecule } from 'openchemlib';
2
- import type { Prediction1D } from '../../types/prediction1D';
2
+ import type { Prediction1D } from '../prediction1D';
3
3
  interface FetchPredictionOptions {
4
4
  webserviceURL: string;
5
5
  }
@@ -1,4 +1,4 @@
1
- /// <reference path="../../../src/types/openchemlib-utils/index..d.ts" />
1
+ /// <reference path="../../../src/openchemlib.d.ts" />
2
2
  import type { Molecule } from 'openchemlib';
3
3
  import type { GroupDiastereotopicAtomIDs } from 'openchemlib-utils';
4
4
  export interface GroupDiaIDsWithHose extends GroupDiastereotopicAtomIDs {
@@ -1,4 +1,4 @@
1
1
  import type { Molecule } from 'openchemlib';
2
- import type { Prediction1D } from '../../types/prediction1D';
2
+ import type { Prediction1D } from '../prediction1D';
3
3
  import type { Predictions, PredictOptions, Predictors } from './predict2D';
4
4
  export declare function getPredictions(key: string, molecule: Molecule, predictOptions: PredictOptions, predictor?: Predictors, predictions?: Predictions): Promise<Prediction1D | undefined>;
@@ -3,7 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.getPredictions = void 0;
4
4
  async function getPredictions(key, molecule, predictOptions, predictor, predictions) {
5
5
  let prediction;
6
- if (predictions && predictions[key]) {
6
+ if (predictions === null || predictions === void 0 ? void 0 : predictions[key]) {
7
7
  prediction = predictions[key];
8
8
  }
9
9
  else if (predictor) {
@@ -1 +1 @@
1
- {"version":3,"file":"getPredictions.js","sourceRoot":"","sources":["../../../src/prediction/utils/getPredictions.ts"],"names":[],"mappings":";;;AAMO,KAAK,UAAU,cAAc,CAClC,GAAW,EACX,QAAkB,EAClB,cAA8B,EAC9B,SAAsB,EACtB,WAAyB;IAEzB,IAAI,UAAoC,CAAC;IACzC,IAAI,WAAW,IAAI,WAAW,CAAC,GAAG,CAAC,EAAE;QACnC,UAAU,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;KAC/B;SAAM,IAAI,SAAS,EAAE;QACpB,MAAM,aAAa,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC;QACrC,UAAU,GAAG,aAAa;YACxB,CAAC,CAAC,MAAM,aAAa,CAAC,QAAQ,EAAE,cAAc,CAAC,GAAG,CAAC,CAAC;YACpD,CAAC,CAAC,SAAS,CAAC;KACf;IACD,OAAO,UAAU,CAAC;AACpB,CAAC;AAjBD,wCAiBC"}
1
+ {"version":3,"file":"getPredictions.js","sourceRoot":"","sources":["../../../src/prediction/utils/getPredictions.ts"],"names":[],"mappings":";;;AAMO,KAAK,UAAU,cAAc,CAClC,GAAW,EACX,QAAkB,EAClB,cAA8B,EAC9B,SAAsB,EACtB,WAAyB;IAEzB,IAAI,UAAoC,CAAC;IACzC,IAAI,WAAW,aAAX,WAAW,uBAAX,WAAW,CAAG,GAAG,CAAC,EAAE;QACtB,UAAU,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;KAC/B;SAAM,IAAI,SAAS,EAAE;QACpB,MAAM,aAAa,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC;QACrC,UAAU,GAAG,aAAa;YACxB,CAAC,CAAC,MAAM,aAAa,CAAC,QAAQ,EAAE,cAAc,CAAC,GAAG,CAAC,CAAC;YACpD,CAAC,CAAC,SAAS,CAAC;KACf;IACD,OAAO,UAAU,CAAC;AACpB,CAAC;AAjBD,wCAiBC"}
@@ -1,8 +1,8 @@
1
1
  import { Molecule } from 'openchemlib';
2
- import type { NMRSignal2D } from '../../types/NMRSignal2D';
3
- import type { Prediction1D } from '../../types/prediction1D';
2
+ import type { NMRSignal2D } from '../../xyz/NMRSignal2D';
4
3
  import type { PredictCarbon, PredictCarbonOptions } from '../predictCarbon';
5
4
  import type { PredictProton, PredictProtonOptions } from '../predictProton';
5
+ import type { Prediction1D } from '../prediction1D';
6
6
  /**
7
7
  * Generate the correlation bidimensional nmr peaks based on the number of bonds between a pair of atoms
8
8
  * @returns {object} - object with molfile, diaIDs, 2D signals and zones.
@@ -1,4 +1,4 @@
1
- import type { DataBaseStructure } from '../../types/dataStructure';
1
+ import type { DataBaseStructure } from '../dataStructure';
2
2
  import type { GroupedDiaIDsWithHose } from './getFilteredIDiaIDs';
3
3
  export interface Prediction {
4
4
  diaIDs: string[];
@@ -1,4 +1,4 @@
1
- import type { NMRRange } from '../types/NMRRange';
1
+ import type { NMRRange } from '../xy/NMRRange';
2
2
  export interface RangesToACSOptions {
3
3
  /**
4
4
  * nucleus
@@ -26,15 +26,14 @@ const globalOptions = {
26
26
  function rangesToACS(ranges, options = {}) {
27
27
  if (!options.nucleus)
28
28
  options.nucleus = '1H';
29
- let nucleus = options.nucleus.toLowerCase().replace(/[0-9]/g, '');
30
- //@ts-expect-error
31
- let defaultOptions = globalOptions[nucleus];
29
+ const nucleus = options.nucleus.toLowerCase().replace(/[0-9]/g, '');
30
+ const defaultOptions = globalOptions[nucleus];
32
31
  options = Object.assign({}, defaultOptions, { ascending: false, format: 'IMJA' }, options);
33
32
  ranges = JSON.parse(JSON.stringify(ranges));
34
33
  if (options.ascending === true) {
35
34
  ranges.sort((a, b) => {
36
- let fromA = Math.min(a.from, a.to);
37
- let fromB = Math.min(b.from, b.to);
35
+ const fromA = Math.min(a.from, a.to);
36
+ const fromB = Math.min(b.from, b.to);
38
37
  return fromA - fromB;
39
38
  });
40
39
  }
@@ -48,8 +47,8 @@ function formatAcs(ranges, options) {
48
47
  let acs = spectroInformation(options);
49
48
  if (acs.length === 0)
50
49
  acs = 'δ ';
51
- let acsRanges = [];
52
- for (let range of ranges) {
50
+ const acsRanges = [];
51
+ for (const range of ranges) {
53
52
  if (uselessKind(range.kind, options.filter))
54
53
  continue;
55
54
  pushDelta(range, acsRanges, options);
@@ -62,7 +61,7 @@ function formatAcs(ranges, options) {
62
61
  }
63
62
  }
64
63
  function spectroInformation(options) {
65
- let parenthesis = [];
64
+ const parenthesis = [];
66
65
  let strings = `${formatNucleus(options.nucleus)} NMR`;
67
66
  if (options.solvent) {
68
67
  parenthesis.push(formatMF(options.solvent));
@@ -81,7 +80,7 @@ function spectroInformation(options) {
81
80
  function pushDelta(range, acsRanges, options) {
82
81
  let strings = '';
83
82
  let parenthesis = [];
84
- let fromTo = [range.from, range.to];
83
+ const fromTo = [range.from, range.to];
85
84
  if (range.signals) {
86
85
  range.signals = range.signals.filter((signal) => !uselessKind(signal.kind, options.filter));
87
86
  }
@@ -1 +1 @@
1
- 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1
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@@ -1,5 +1,5 @@
1
1
  import type { Shape1D } from 'ml-peak-shape-generator';
2
- import type { NMRRange } from '../types/NMRRange';
2
+ import type { NMRRange } from '../xy/NMRRange';
3
3
  export interface RangeToXYOptions {
4
4
  /**
5
5
  * frequency observed
@@ -1 +1 @@
1
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1
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@@ -1,4 +1,4 @@
1
- import type { NMRSignal1D } from '../types/NMRSignal1D';
1
+ import type { NMRSignal1D } from '../signals/NMRSignal1D';
2
2
  export interface SignalJoinCouplingsOptions {
3
3
  /**
4
4
  * tolerance to merge the couplings
@@ -1,4 +1,4 @@
1
- import type { NMRSignal1D } from '../types/NMRSignal1D';
1
+ import type { NMRSignal1D } from '../signals/NMRSignal1D';
2
2
  /**
3
3
  * Return
4
4
  * @param {*} signal
@@ -1,4 +1,4 @@
1
- import type { NMRPeak1D } from './NMRPeak1D';
1
+ import type { NMRPeak1D } from '../peaks/NMRPeak1D';
2
2
  import type { Jcoupling } from './jcoupling';
3
3
  export interface NMRSignal1D {
4
4
  delta: number;
File without changes
@@ -1 +1 @@
1
- {"version":3,"file":"NMRSignal1D.js","sourceRoot":"","sources":["../../src/types/NMRSignal1D.ts"],"names":[],"mappings":""}
1
+ {"version":3,"file":"NMRSignal1D.js","sourceRoot":"","sources":["../../src/signals/NMRSignal1D.ts"],"names":[],"mappings":""}