nmr-processing 12.9.1 → 12.10.1

package/nmr-processing.d.ts

@@ -9,6 +9,7 @@ import { GSDOptions } from 'ml-gsd';
 import { GSDPeakOptimized } from 'ml-gsd';
 import { GSDPeakOptimizedID } from 'ml-gsd';
 import { JoinBroadPeaksOptions } from 'ml-gsd';
+import type { LightLogger } from 'cheminfo-types';
 import { Logger } from 'cheminfo-types';
 import { Matrix } from 'ml-matrix';
 import * as matrixPeakFinders from 'ml-matrix-peaks-finder';
@@ -160,7 +161,7 @@ export declare interface BaselineCorrectionZone {
     id: string;
 }
 
-declare interface BaselineZoneOptions {
+export declare interface BaselineZoneOptions {
     /**
      * The width factor to use to enlarge the peaks width
      * @default 20
@@ -188,6 +189,13 @@ declare interface BaselineZoneOptions {
     minWidth?: number;
 }
 
+declare interface BaselineZoneOptionsDietrich extends BaselineZoneOptions {
+    /**
+     * distance in number of points to join zones
+     */
+    maxDistanceToJoin?: number;
+}
+
 declare interface BasePeak {
     id: string;
 }
@@ -268,6 +276,7 @@ export declare function ctParser(sdf: string, csv: string, options: {
     OCL: {
         Molecule: typeof Molecule_2;
     };
+    logger?: LightLogger;
 }): {
     molecules: ParsedMolecule[];
     sections: Record<string, any>;
@@ -616,11 +625,7 @@ export declare function getBaselineZones(data: NmrData1D, options?: BaselineZone
  * Generate baseline zones by Dietrich method, it uses an iterative thresholding to discard signals zones over a power spectrum.
  * the implementation is based on the publication of Cobas et al (DOI: {@link https://doi.org/10.1016/j.jmr.2006.07.013})
  */
-export declare function getBaselineZonesByDietrich(data: NmrData1D, options?: {
-    maxDistanceToJoin?: number;
-    minWidth?: number;
-    nbZones?: number;
-}): BaselineCorrectionZone[];
+export declare function getBaselineZonesByDietrich(data: NmrData1D, options?: BaselineZoneOptionsDietrich): BaselineCorrectionZone[];
 
 export declare function getDatabase(url?: string, options?: {
     /**