nmr-processing 11.1.1 → 11.1.2-pre.1695968744

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Files changed (11) hide show
  1. package/lib/datum/data1d/utils/RangeUtilities.js +8 -7
  2. package/lib/datum/data1d/utils/RangeUtilities.js.map +1 -1
  3. package/lib/datum/data1d/utils/mapRanges.js +1 -1
  4. package/lib/datum/data1d/utils/mapRanges.js.map +1 -1
  5. package/lib-esm/datum/data1d/utils/RangeUtilities.js +8 -7
  6. package/lib-esm/datum/data1d/utils/RangeUtilities.js.map +1 -1
  7. package/lib-esm/datum/data1d/utils/mapRanges.js +1 -1
  8. package/lib-esm/datum/data1d/utils/mapRanges.js.map +1 -1
  9. package/package.json +2 -3
  10. package/src/datum/data1d/utils/RangeUtilities.ts +8 -10
  11. package/src/datum/data1d/utils/mapRanges.ts +1 -1
package/lib/datum/data1d/utils/RangeUtilities.js CHANGED
@@ -5,7 +5,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.checkSignalKinds = exports.checkRangeKind = exports.addDefaultSignal = exports.unlink = exports.resetDiaIDs = exports.setNbAtoms = exports.getNbAtoms = exports.getDiaIDs = void 0;
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  const uuid_1 = require("@lukeed/uuid");
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- const omit_1 = __importDefault(require("lodash/omit"));
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+ const just_omit_1 = __importDefault(require("just-omit"));
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  const SignalsKinds_1 = require("../../../constants/SignalsKinds");
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  function getDiaIDs(range) {
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  return [].concat(range.diaIDs || [], range.signals
@@ -34,26 +34,27 @@ function setNbAtoms(range, signalIndex) {
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  }
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  exports.setNbAtoms = setNbAtoms;
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  function resetDiaIDs(range) {
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- const deletedKeys = ['diaIDs', 'nbAtoms'];
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- range = (0, omit_1.default)(range, deletedKeys);
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+ range = (0, just_omit_1.default)(range, ['diaIDs', 'nbAtoms']);
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  range.signals = range.signals.map((signal) => {
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- return (0, omit_1.default)(signal, deletedKeys);
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+ return (0, just_omit_1.default)(signal, ['diaIDs', 'nbAtoms']);
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  });
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  }
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  exports.resetDiaIDs = resetDiaIDs;
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  function unlink(range, options = {}) {
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  const { unlinkType = 'both', signalIndex = -1 } = options;
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- const keys = ['diaIDs', 'nbAtoms'];
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  switch (unlinkType) {
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  case 'both':
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  resetDiaIDs(range);
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  break;
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  case 'range':
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- range = (0, omit_1.default)(range, keys);
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+ range = (0, just_omit_1.default)(range, ['diaIDs', 'nbAtoms']);
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  break;
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  case 'signal':
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  if (signalIndex !== -1) {
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- range.signals[signalIndex] = (0, omit_1.default)(range.signals[signalIndex], keys);
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+ range.signals[signalIndex] = (0, just_omit_1.default)(range.signals[signalIndex], [
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+ 'diaIDs',
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+ 'nbAtoms',
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+ ]);
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  }
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  break;
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  default:
package/lib/datum/data1d/utils/RangeUtilities.js.map CHANGED
@@ -1 +1 @@
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1
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package/lib/datum/data1d/utils/mapRanges.js CHANGED
@@ -104,7 +104,7 @@ function mapRanges(ranges, spectrum, options = {}) {
104
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  return {
105
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  ...range,
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  id: range.id || (0, uuid_1.v4)(),
107
- kind: signals?.[0].kind || SignalsKinds_1.DatumKind.signal,
107
+ kind: (signals?.length && signals[0].kind) || SignalsKinds_1.DatumKind.signal,
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  ...rangeBoundary,
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  absolute,
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  signals,
package/lib/datum/data1d/utils/mapRanges.js.map CHANGED
@@ -1 +1 @@
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1
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package/lib-esm/datum/data1d/utils/RangeUtilities.js CHANGED
@@ -1,5 +1,5 @@
1
1
  import { v4 as generateID } from '@lukeed/uuid';
2
- import omit from 'lodash/omit';
2
+ import omit from 'just-omit';
3
3
  import { DatumKind } from '../../../constants/SignalsKinds';
4
4
  export function getDiaIDs(range) {
5
5
  return [].concat(range.diaIDs || [], range.signals
@@ -25,25 +25,26 @@ export function setNbAtoms(range, signalIndex) {
25
25
  }
26
26
  }
27
27
  export function resetDiaIDs(range) {
28
- const deletedKeys = ['diaIDs', 'nbAtoms'];
29
- range = omit(range, deletedKeys);
28
+ range = omit(range, ['diaIDs', 'nbAtoms']);
30
29
  range.signals = range.signals.map((signal) => {
31
- return omit(signal, deletedKeys);
30
+ return omit(signal, ['diaIDs', 'nbAtoms']);
32
31
  });
33
32
  }
34
33
  export function unlink(range, options = {}) {
35
34
  const { unlinkType = 'both', signalIndex = -1 } = options;
36
- const keys = ['diaIDs', 'nbAtoms'];
37
35
  switch (unlinkType) {
38
36
  case 'both':
39
37
  resetDiaIDs(range);
40
38
  break;
41
39
  case 'range':
42
- range = omit(range, keys);
40
+ range = omit(range, ['diaIDs', 'nbAtoms']);
43
41
  break;
44
42
  case 'signal':
45
43
  if (signalIndex !== -1) {
46
- range.signals[signalIndex] = omit(range.signals[signalIndex], keys);
44
+ range.signals[signalIndex] = omit(range.signals[signalIndex], [
45
+ 'diaIDs',
46
+ 'nbAtoms',
47
+ ]);
47
48
  }
48
49
  break;
49
50
  default:
package/lib-esm/datum/data1d/utils/RangeUtilities.js.map CHANGED
@@ -1 +1 @@
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package/lib-esm/datum/data1d/utils/mapRanges.js CHANGED
@@ -101,7 +101,7 @@ export function mapRanges(ranges, spectrum, options = {}) {
101
101
  return {
102
102
  ...range,
103
103
  id: range.id || v4(),
104
- kind: signals?.[0].kind || DatumKind.signal,
104
+ kind: (signals?.length && signals[0].kind) || DatumKind.signal,
105
105
  ...rangeBoundary,
106
106
  absolute,
107
107
  signals,
package/lib-esm/datum/data1d/utils/mapRanges.js.map CHANGED
@@ -1 +1 @@
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1
+ {"version":3,"file":"mapRanges.js","sourceRoot":"","sources":["../../../../src/datum/data1d/utils/mapRanges.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,EAAE,EAAE,MAAM,cAAc,CAAC;AAClC,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAEtD,OAAO,EAAE,SAAS,EAAE,MAAM,iCAAiC,CAAC;AAC5D,OAAO,EAAE,yBAAyB,EAAE,MAAM,2CAA2C,CAAC;AAOtF,OAAO,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AACxC,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAC;AAChE,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAE1C,SAAS,UAAU,CAAC,KAAY,EAAE,QAAiB,EAAE,KAAa;IAChE,uCAAuC;IACvC,KAAK,MAAM,EAAE,IAAI,EAAE,EAAE,EAAE,IAAI,QAAQ,CAAC,MAAM,EAAE,MAAM,IAAI,EAAE,EAAE;QACxD,IACE,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,GAAG,IAAI,CAAC,GAAG,KAAK;YACnC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,KAAK,EAC/B;YACA,OAAO,IAAI,CAAC;SACb;KACF;AACH,CAAC;AAED,SAAS,QAAQ,CACf,KAAY,EACZ,WAAiC,EACjC,KAAa;IAEb,MAAM,EAAE,YAAY,EAAE,UAAU,EAAE,IAAI,EAAE,EAAE,EAAE,GAAG,KAAK,CAAC;IACrD,IAAI,WAAW,KAAK,QAAQ,EAAE;QAC5B,OAAO;YACL,YAAY,EAAE,IAAI,GAAG,KAAK;YAC1B,UAAU,EAAE,EAAE,GAAG,KAAK;YACtB,IAAI;YACJ,EAAE;SACH,CAAC;KACH;SAAM;QACL,OAAO;YACL,YAAY;YACZ,UAAU;YACV,IAAI,EAAE,CAAC,YAAY,IAAI,CAAC,CAAC,GAAG,KAAK;YACjC,EAAE,EAAE,CAAC,UAAU,IAAI,CAAC,CAAC,GAAG,KAAK;SAC9B,CAAC;KACH;AACH,CAAC;AAED,SAAS,cAAc,CACrB,MAAgB,EAChB,WAAwB,EACxB,KAAa;IAEb,MAAM,EAAE,KAAK,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC;IACxC,IAAI,WAAW,KAAK,QAAQ,EAAE;QAC5B,OAAO;YACL,aAAa,EAAE,KAAK,GAAG,KAAK;YAC5B,KAAK;SACN,CAAC;KACH;SAAM;QACL,OAAO;YACL,aAAa;YACb,KAAK,EAAE,CAAC,aAAa,IAAI,CAAC,CAAC,GAAG,KAAK;SACpC,CAAC;KACH;AACH,CAAC;AAED,SAAS,eAAe,CAAC,KAAe;IACtC,MAAM,EAAE,OAAO,GAAG,EAAE,EAAE,WAAW,GAAG,CAAC,EAAE,GAAG,SAAS,EAAE,GAAG,KAAK,CAAC;IAC9D,MAAM,UAAU,GAAe,EAAE,CAAC;IAClC,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE;QAC5B,MAAM,EAAE,YAAY,EAAE,GAAG,UAAU,EAAE,GAAG,MAAM,CAAC;QAC/C,UAAU,CAAC,IAAI,CAAC;YACd,EAAE,EAAE,EAAE,EAAE;YACR,EAAE,EAAE,EAAE;YACN,YAAY,EAAE,YAAY,IAAI,yBAAyB,CAAC,MAAM,CAAC;YAC/D,GAAG,UAAU;SACd,CAAC,CAAC;KACJ;IACD,OAAO;QACL,EAAE,EAAE,EAAE,EAAE;QACR,WAAW;QACX,QAAQ,EAAE,WAAW,IAAI,CAAC;QAC1B,OAAO,EAAE,UAAU;QACnB,GAAG,SAAS;KACb,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,SAAS,CACvB,MAA4B,EAC5B,QAAiB,EACjB,UAAsB,EAAE;IAExB,MAAM,EAAE,eAAe,GAAG,IAAI,EAAE,WAAW,GAAG,QAAQ,EAAE,GAAG,OAAO,CAAC;IACnE,MAAM,EAAE,CAAC,EAAE,EAAE,EAAE,GAAG,QAAQ,CAAC,IAAI,CAAC;IAChC,MAAM,MAAM,GAAG,SAAS,CAAC,QAAQ,CAAC,CAAC;IACnC,MAAM,KAAK,GAAG,qBAAqB,CAAC,QAAQ,CAAC,CAAC;IAE9C,IAAI,SAAS,GAAG,MAAM,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;IAC5C,IAAI,eAAe,EAAE;QACnB,SAAS,GAAG,SAAS,CAAC,MAAM,CAC1B,CAAC,CAAC,EAAE,EAAE,CACJ,CAAC,eAAe,IAAI,CAAC,UAAU,CAAC,CAAC,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,KAAK,CACzE,CAAC;KACH;IACD,OAAO,SAAS,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE;QAC7B,MAAM,aAAa,GAAG,QAAQ,CAAC,KAAK,EAAE,WAAW,EAAE,MAAM,CAAC,CAAC;QAE3D,MAAM,QAAQ,GAAG,aAAa,CAC5B,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,EACZ,EAAE,IAAI,EAAE,aAAa,CAAC,IAAI,EAAE,EAAE,EAAE,aAAa,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE,CAClE,CAAC;QACF,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE;YAC3C,MAAM,EAAE,IAAI,GAAG,IAAI,EAAE,EAAE,EAAE,KAAK,EAAE,UAAU,GAAG,EAAE,EAAE,GAAG,SAAS,EAAE,GAAG,MAAM,CAAC;YAEzE,MAAM,KAAK,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;gBACpC,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,EAAE,WAAW,EAAE,MAAM,CAAC,CAAC;gBAC1D,OAAO;oBACL,EAAE,EAAE,IAAI,EAAE,EAAE,IAAI,EAAE,EAAE;oBACpB,GAAG,IAAI;oBACP,GAAG,SAAS;iBACb,CAAC;YACJ,CAAC,CAAC,CAAC;YACH,OAAO;gBACL,IAAI,EAAE,IAAI,IAAI,QAAQ;gBACtB,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE;gBACd,KAAK;gBACL,GAAG,SAAS;gBACZ,GAAG,cAAc,CAAC,MAAM,EAAE,WAAW,EAAE,MAAM,CAAC;aAC/C,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,OAAO;YACL,GAAG,KAAK;YACR,EAAE,EAAE,KAAK,CAAC,EAAE,IAAI,EAAE,EAAE;YACpB,IAAI,EAAE,CAAC,OAAO,EAAE,MAAM,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,SAAS,CAAC,MAAM;YAC9D,GAAG,aAAa;YAChB,QAAQ;YACR,OAAO;SACR,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "nmr-processing",
3
- "version": "11.1.1",
3
+ "version": "11.1.2-pre.1695968744",
4
4
  "description": "Pure functions allowing to process NMR spectra.",
5
5
  "main": "./lib/index.js",
6
6
  "module": "./lib-esm/index.js",
@@ -57,14 +57,13 @@
57
57
  },
58
58
  "dependencies": {
59
59
  "@lukeed/uuid": "^2.0.1",
60
- "@types/lodash": "^4.14.198",
61
60
  "binary-search": "^1.3.6",
62
61
  "cross-fetch": "^4.0.0",
63
62
  "form-data": "^4.0.0",
64
63
  "gyromagnetic-ratio": "^1.0.0",
65
64
  "is-any-array": "^2.0.1",
65
+ "just-omit": "^2.2.0",
66
66
  "linear-sum-assignment": "^1.0.5",
67
- "lodash": "^4.17.21",
68
67
  "ml-airpls": "^1.0.2",
69
68
  "ml-baseline-correction-regression": "^1.0.2",
70
69
  "ml-direct": "^0.1.3",
package/src/datum/data1d/utils/RangeUtilities.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import { v4 as generateID } from '@lukeed/uuid';
2
- import omit from 'lodash/omit';
2
+ import omit from 'just-omit';
3
3
 
4
4
  import { DatumKind } from '../../../constants/SignalsKinds';
5
5
  import { Range } from '../../../types/Ranges/Ranges';
@@ -36,10 +36,9 @@ export function setNbAtoms(range: Range, signalIndex?: number): void {
36
36
  }
37
37
 
38
38
  export function resetDiaIDs(range: Range): void {
39
- const deletedKeys = ['diaIDs', 'nbAtoms'];
40
- range = omit(range, deletedKeys) as Range;
39
+ range = omit(range, ['diaIDs', 'nbAtoms']) as Range;
41
40
  range.signals = range.signals.map((signal) => {
42
- return omit(signal, deletedKeys) as Signal1D;
41
+ return omit(signal, ['diaIDs', 'nbAtoms']) as Signal1D;
43
42
  });
44
43
  }
45
44
 
@@ -58,21 +57,20 @@ interface UnlinkOptions {
58
57
  }
59
58
  export function unlink(range: Range, options: UnlinkOptions = {}): Range {
60
59
  const { unlinkType = 'both', signalIndex = -1 } = options;
61
- const keys = ['diaIDs', 'nbAtoms'];
62
60
 
63
61
  switch (unlinkType) {
64
62
  case 'both':
65
63
  resetDiaIDs(range);
66
64
  break;
67
65
  case 'range':
68
- range = omit(range, keys) as Range;
66
+ range = omit(range, ['diaIDs', 'nbAtoms']) as Range;
69
67
  break;
70
68
  case 'signal':
71
69
  if (signalIndex !== -1) {
72
- range.signals[signalIndex] = omit(
73
- range.signals[signalIndex],
74
- keys,
75
- ) as Signal1D;
70
+ range.signals[signalIndex] = omit(range.signals[signalIndex], [
71
+ 'diaIDs',
72
+ 'nbAtoms',
73
+ ]) as Signal1D;
76
74
  }
77
75
  break;
78
76
  default:
package/src/datum/data1d/utils/mapRanges.ts CHANGED
@@ -135,7 +135,7 @@ export function mapRanges(
135
135
  return {
136
136
  ...range,
137
137
  id: range.id || v4(),
138
- kind: signals?.[0].kind || DatumKind.signal,
138
+ kind: (signals?.length && signals[0].kind) || DatumKind.signal,
139
139
  ...rangeBoundary,
140
140
  absolute,
141
141
  signals,