nlptoolkit-classification 1.0.6 → 1.0.8

package/dist/Model/RandomModel.js

@@ -15,22 +15,29 @@
     const Random_1 = require("nlptoolkit-util/dist/Random");
     const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
     class RandomModel extends Model_1.Model {
-        constructor(classLabelsOrFileName, seed) {
-            super();
-            if (classLabelsOrFileName instanceof Array) {
-                this.classLabels = classLabelsOrFileName;
-                this.random = new Random_1.Random(seed);
-                this.seed = seed;
-            }
-            else {
-                let input = new FileContents_1.FileContents(classLabelsOrFileName);
-                seed = parseInt(input.readLine());
-                this.random = new Random_1.Random(seed);
-                let size = parseInt(input.readLine());
-                this.classLabels = new Array();
-                for (let i = 0; i < size; i++) {
-                    this.classLabels.push(input.readLine());
-                }
+        /**
+         * A constructor that sets the class labels.
+         *
+         * @param classLabels An ArrayList of class labels.
+         * @param seed Seed of the random function.
+         */
+        constructor1(classLabels, seed) {
+            this.classLabels = classLabels;
+            this.random = new Random_1.Random(seed);
+            this.seed = seed;
+        }
+        /**
+         * Loads a random classifier model from an input model file.
+         * @param fileName Model file name.
+         */
+        constructor2(fileName) {
+            let input = new FileContents_1.FileContents(fileName);
+            this.seed = parseInt(input.readLine());
+            this.random = new Random_1.Random(this.seed);
+            let size = parseInt(input.readLine());
+            this.classLabels = new Array();
+            for (let i = 0; i < size; i++) {
+                this.classLabels.push(input.readLine());
             }
         }
         /**
@@ -53,6 +60,11 @@
                 return this.classLabels[index];
             }
         }
+        /**
+         * Calculates the posterior probability distribution for the given instance according to random model.
+         * @param instance Instance for which posterior probability distribution is calculated.
+         * @return Posterior probability distribution for the given instance.
+         */
         predictProbability(instance) {
             let result = new Map();
             for (let classLabel of this.classLabels) {
@@ -62,6 +74,26 @@
         }
         saveTxt(fileName) {
         }
+        /**
+         * Training algorithm for random classifier.
+         *
+         * @param trainSet   Training data given to the algorithm.
+         * @param parameters -
+         */
+        train(trainSet, parameters) {
+            let result = new Array();
+            for (let s of trainSet.classDistribution().keys()) {
+                result.push(s);
+            }
+            this.constructor1(result, parameters.getSeed());
+        }
+        /**
+         * Loads the random classifier model from an input file.
+         * @param fileName File name of the random classifier model.
+         */
+        loadModel(fileName) {
+            this.constructor2(fileName);
+        }
     }
     exports.RandomModel = RandomModel;
 });

package/dist/Model/RandomModel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"RandomModel.js","sourceRoot":"","sources":["../../source/Model/RandomModel.ts"],"names":[],"mappings":";;;;;;;;;;;;IAAA,mCAA8B;IAE9B,qEAAgE;IAChE,wDAAmD;IACnD,oEAA+D;IAI/D,MAAa,WAAY,SAAQ,aAAK;QAMlC;;;;;WAKG;QACH,YAAY,CAAC,WAA0B,EAAE,IAAY;YACjD,IAAI,CAAC,WAAW,GAAG,WAAW,CAAA;YAC9B,IAAI,CAAC,MAAM,GAAG,IAAI,eAAM,CAAC,IAAI,CAAC,CAAA;YAC9B,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QACpB,CAAC;QAED;;;WAGG;QACH,YAAY,CAAC,QAAgB;YACzB,IAAI,KAAK,GAAG,IAAI,2BAAY,CAAC,QAAQ,CAAC,CAAA;YACtC,IAAI,CAAC,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAA;YACtC,IAAI,CAAC,MAAM,GAAG,IAAI,eAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YACnC,IAAI,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAA;YACrC,IAAI,CAAC,WAAW,GAAG,IAAI,KAAK,EAAU,CAAA;YACtC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAC;gBAC1B,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAA;aAC1C;QACL,CAAC;QAED;;;;;;WAMG;QACH,OAAO,CAAC,QAAkB;YACtB,IAAI,CAAC,QAAQ,YAAY,qCAAiB,CAAC,EAAE;gBACzC,IAAI,mBAAmB,GAAwB,QAAS,CAAC,sBAAsB,EAAE,CAAC;gBAClF,IAAI,IAAI,GAAG,mBAAmB,CAAC,MAAM,CAAC;gBACtC,IAAI,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;gBACtC,OAAO,mBAAmB,CAAC,KAAK,CAAC,CAAC;aACrC;iBAAM;gBACH,IAAI,IAAI,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC;gBACnC,IAAI,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;gBACtC,OAAO,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;aAClC;QACL,CAAC;QAED;;;;WAIG;QACH,kBAAkB,CAAC,QAAkB;YACjC,IAAI,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAC;YACvC,KAAK,IAAI,UAAU,IAAI,IAAI,CAAC,WAAW,EAAC;gBACpC,MAAM,CAAC,GAAG,CAAC,UAAU,EAAE,GAAG,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;aACzD;YACD,OAAO,MAAM,CAAC;QAClB,CAAC;QAED,OAAO,CAAC,QAAgB;QACxB,CAAC;QAED;;;;;WAKG;QACH,KAAK,CAAC,QAAsB,EAAE,UAAqB;YAC/C,IAAI,MAAM,GAAG,IAAI,KAAK,EAAU,CAAA;YAChC,KAAK,IAAI,CAAC,IAAI,QAAQ,CAAC,iBAAiB,EAAE,CAAC,IAAI,EAAE,EAAC;gBAC9C,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;aACjB;YACD,IAAI,CAAC,YAAY,CAAC,MAAM,EAAE,UAAU,CAAC,OAAO,EAAE,CAAC,CAAC;QACpD,CAAC;QAED;;;WAGG;QACH,SAAS,CAAC,QAAgB;YACtB,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAA;QAC/B,CAAC;KAEJ;IA3FD,kCA2FC"}

package/dist/Parameter/C45Parameter.d.ts

@@ -1,7 +1,7 @@
 import { Parameter } from "./Parameter";
 export declare class C45Parameter extends Parameter {
-    private prune;
-    private crossValidationRatio;
+    private readonly prune;
+    private readonly crossValidationRatio;
     /**
      * Parameters of the C4.5 univariate decision tree classifier.
      *

package/dist/Parameter/DeepNetworkParameter.d.ts

@@ -1,8 +1,8 @@
 import { LinearPerceptronParameter } from "./LinearPerceptronParameter";
 import { ActivationFunction } from "./ActivationFunction";
 export declare class DeepNetworkParameter extends LinearPerceptronParameter {
-    private hiddenLayers;
-    private activationFunction;
+    private readonly hiddenLayers;
+    private readonly activationFunction;
     /**
      * Parameters of the deep network classifier.
      *

package/dist/Parameter/KnnParameter.d.ts

@@ -1,7 +1,7 @@
 import { KMeansParameter } from "./KMeansParameter";
 import { DistanceMetric } from "../DistanceMetric/DistanceMetric";
 export declare class KnnParameter extends KMeansParameter {
-    private k;
+    private readonly k;
     /**
      * Parameters of the K-nearest neighbor classifier.
      *

package/dist/Parameter/LinearPerceptronParameter.d.ts

@@ -1,9 +1,9 @@
 import { Parameter } from "./Parameter";
 export declare class LinearPerceptronParameter extends Parameter {
-    private learningRate;
-    private etaDecrease;
-    private crossValidationRatio;
-    private epoch;
+    private readonly learningRate;
+    private readonly etaDecrease;
+    private readonly crossValidationRatio;
+    private readonly epoch;
     /**
      * Parameters of the linear perceptron algorithm.
      *

package/dist/Parameter/MultiLayerPerceptronParameter.d.ts

@@ -1,8 +1,8 @@
 import { LinearPerceptronParameter } from "./LinearPerceptronParameter";
 import { ActivationFunction } from "./ActivationFunction";
 export declare class MultiLayerPerceptronParameter extends LinearPerceptronParameter {
-    private hiddenNodes;
-    private activationFunction;
+    private readonly hiddenNodes;
+    private readonly activationFunction;
     /**
      * Parameters of the multi layer perceptron algorithm.
      *

package/dist/Parameter/Parameter.d.ts

@@ -1,5 +1,5 @@
 export declare class Parameter {
-    private seed;
+    private readonly seed;
     /**
      * Constructor of {@link Parameter} class which assigns given seed value to seed.
      *

package/dist/Performance/ConfusionMatrix.d.ts

@@ -1,6 +1,6 @@
 export declare class ConfusionMatrix {
     private matrix;
-    private classLabels;
+    private readonly classLabels;
     /**
      * Constructor that sets the class labels {@link Array} and creates new {@link Map} matrix
      *

package/dist/StatisticalTest/Combined5x2F.d.ts

@@ -2,6 +2,18 @@ import { PairedTest } from "./PairedTest";
 import { ExperimentPerformance } from "../Performance/ExperimentPerformance";
 import { StatisticalTestResult } from "./StatisticalTestResult";
 export declare class Combined5x2F extends PairedTest {
+    /**
+     * Calculates the test statistic of the combined 5x2 cv F test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Given the performances of two classifiers, the test statistic of the combined 5x2 cv F test.
+     */
     private testStatistic;
+    /**
+     * Compares two classification algorithms based on their performances (accuracy or error rate) using combined 5x2 cv F test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Statistical test result of the comparison.
+     */
     compareClassifiers(classifier1: ExperimentPerformance, classifier2: ExperimentPerformance): StatisticalTestResult;
 }

package/dist/StatisticalTest/Combined5x2F.js

@@ -14,6 +14,12 @@
     const StatisticalTestResult_1 = require("./StatisticalTestResult");
     const Distribution_1 = require("nlptoolkit-math/dist/Distribution");
     class Combined5x2F extends PairedTest_1.PairedTest {
+        /**
+         * Calculates the test statistic of the combined 5x2 cv F test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Given the performances of two classifiers, the test statistic of the combined 5x2 cv F test.
+         */
         testStatistic(classifier1, classifier2) {
             let difference = new Array();
             let numerator = 0;
@@ -31,6 +37,12 @@
             denominator *= 2;
             return numerator / denominator;
         }
+        /**
+         * Compares two classification algorithms based on their performances (accuracy or error rate) using combined 5x2 cv F test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Statistical test result of the comparison.
+         */
         compareClassifiers(classifier1, classifier2) {
             let statistic = this.testStatistic(classifier1, classifier2);
             let degreeOfFreedom1 = classifier1.numberOfExperiments();

package/dist/StatisticalTest/Combined5x2F.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Combined5x2F.js","sourceRoot":"","sources":["../../source/StatisticalTest/Combined5x2F.ts"],"names":[],"mappings":";;;;;;;;;;;;IAAA,6CAAwC;IAExC,mEAA8D;IAC9D,oEAA+D;IAE/D,MAAa,YAAa,SAAQ,uBAAU;QAExC;;;;;WAKG;QACK,aAAa,CAAC,WAAkC,EAAE,WAAkC;YACxF,IAAI,UAAU,GAAG,IAAI,KAAK,EAAU,CAAC;YACrC,IAAI,SAAS,GAAG,CAAC,CAAA;YACjB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,mBAAmB,EAAE,EAAE,CAAC,EAAE,EAAC;gBACvD,UAAU,CAAC,IAAI,CAAC,WAAW,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,WAAW,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC;gBAC3E,SAAS,IAAI,UAAU,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;aAC9C;YACD,IAAI,WAAW,GAAG,CAAC,CAAC;YACpB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,mBAAmB,EAAE,GAAG,CAAC,EAAE,CAAC,EAAE,EAAC;gBAC3D,IAAI,IAAI,GAAG,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;gBAC3D,IAAI,QAAQ,GAAG,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC;oBAClE,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC;gBACpE,WAAW,IAAI,QAAQ,CAAC;aAC3B;YACD,WAAW,IAAI,CAAC,CAAC;YACjB,OAAO,SAAS,GAAG,WAAW,CAAC;QACnC,CAAC;QAED;;;;;WAKG;QACH,kBAAkB,CAAC,WAAkC,EAAE,WAAkC;YACrF,IAAI,SAAS,GAAG,IAAI,CAAC,aAAa,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;YAC7D,IAAI,gBAAgB,GAAG,WAAW,CAAC,mBAAmB,EAAE,CAAC;YACzD,IAAI,gBAAgB,GAAG,WAAW,CAAC,mBAAmB,EAAE,GAAG,CAAC,CAAC;YAC7D,OAAO,IAAI,6CAAqB,CAAC,2BAAY,CAAC,aAAa,CAAC,SAAS,EAAE,gBAAgB,EAAE,gBAAgB,CAAC,EAAE,IAAI,CAAC,CAAC;QACtH,CAAC;KAEJ;IAvCD,oCAuCC"}

package/dist/StatisticalTest/Combined5x2t.d.ts

@@ -2,6 +2,19 @@ import { PairedTest } from "./PairedTest";
 import { ExperimentPerformance } from "../Performance/ExperimentPerformance";
 import { StatisticalTestResult } from "./StatisticalTestResult";
 export declare class Combined5x2t extends PairedTest {
+    /**
+     * Calculates the test statistic of the combined 5x2 cv t test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Given the performances of two classifiers, the test statistic of the combined 5x2 cv t test.
+     */
     private testStatistic;
+    /**
+     * Compares two classification algorithms based on their performances (accuracy or error rate) using combined 5x2
+     * cv t test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Statistical test result of the comparison.
+     */
     compareClassifiers(classifier1: ExperimentPerformance, classifier2: ExperimentPerformance): StatisticalTestResult;
 }

package/dist/StatisticalTest/Combined5x2t.js

@@ -14,6 +14,12 @@
     const StatisticalTestResult_1 = require("./StatisticalTestResult");
     const Distribution_1 = require("nlptoolkit-math/dist/Distribution");
     class Combined5x2t extends PairedTest_1.PairedTest {
+        /**
+         * Calculates the test statistic of the combined 5x2 cv t test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Given the performances of two classifiers, the test statistic of the combined 5x2 cv t test.
+         */
         testStatistic(classifier1, classifier2) {
             let difference = new Array();
             for (let i = 0; i < classifier1.numberOfExperiments(); i++) {
@@ -32,6 +38,13 @@
             denominator = Math.sqrt(denominator / 5);
             return numerator / denominator;
         }
+        /**
+         * Compares two classification algorithms based on their performances (accuracy or error rate) using combined 5x2
+         * cv t test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Statistical test result of the comparison.
+         */
         compareClassifiers(classifier1, classifier2) {
             let statistic = this.testStatistic(classifier1, classifier2);
             let degreeOfFreedom = classifier1.numberOfExperiments() / 2;

package/dist/StatisticalTest/Combined5x2t.js.map

@@ -1 +1 @@
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package/dist/StatisticalTest/Paired5x2t.d.ts

@@ -2,6 +2,18 @@ import { PairedTest } from "./PairedTest";
 import { ExperimentPerformance } from "../Performance/ExperimentPerformance";
 import { StatisticalTestResult } from "./StatisticalTestResult";
 export declare class Paired5x2t extends PairedTest {
+    /**
+     * Calculates the test statistic of the 5x2 t test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Given the performances of two classifiers, the test statistic of the 5x2 t test.
+     */
     private testStatistic;
+    /**
+     * Compares two classification algorithms based on their performances (accuracy or error rate) using 5x2 t test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Statistical test result of the comparison.
+     */
     compareClassifiers(classifier1: ExperimentPerformance, classifier2: ExperimentPerformance): StatisticalTestResult;
 }

package/dist/StatisticalTest/Paired5x2t.js

@@ -14,6 +14,12 @@
     const StatisticalTestResult_1 = require("./StatisticalTestResult");
     const Distribution_1 = require("nlptoolkit-math/dist/Distribution");
     class Paired5x2t extends PairedTest_1.PairedTest {
+        /**
+         * Calculates the test statistic of the 5x2 t test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Given the performances of two classifiers, the test statistic of the 5x2 t test.
+         */
         testStatistic(classifier1, classifier2) {
             let difference = new Array();
             let sum = 0.0;
@@ -31,6 +37,12 @@
             denominator = Math.sqrt(denominator / 5);
             return difference[0] / denominator;
         }
+        /**
+         * Compares two classification algorithms based on their performances (accuracy or error rate) using 5x2 t test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Statistical test result of the comparison.
+         */
         compareClassifiers(classifier1, classifier2) {
             let statistic = this.testStatistic(classifier1, classifier2);
             let degreeOfFreedom = classifier1.numberOfExperiments() / 2;

package/dist/StatisticalTest/Paired5x2t.js.map

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package/dist/StatisticalTest/PairedTest.d.ts

@@ -2,5 +2,17 @@ import { ExperimentPerformance } from "../Performance/ExperimentPerformance";
 import { StatisticalTestResult } from "./StatisticalTestResult";
 export declare abstract class PairedTest {
     abstract compareClassifiers(classifier1: ExperimentPerformance, classifier2: ExperimentPerformance): StatisticalTestResult;
+    /**
+     * Compares two classification algorithms based on their performances (accuracy or error rate). The method first
+     * checks the null hypothesis mu1 < mu2, if the test rejects this null hypothesis with alpha level of confidence, it
+     * decides mu1 > mu2. The algorithm then checks the null hypothesis mu1 > mu2, if the test rejects that null
+     * hypothesis with alpha level of confidence, if decides mu1 < mu2. If none of the two tests are rejected, it can not
+     * make a decision about the performances of algorithms.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @param alpha Alpha level defined for the statistical test.
+     * @return 1 if the performance of the first algorithm is larger than the second algorithm, -1 if the performance of
+     * the second algorithm is larger than the first algorithm, 0 if they have similar performance.
+     */
     compare(classifier1: ExperimentPerformance, classifier2: ExperimentPerformance, alpha: number): number;
 }

package/dist/StatisticalTest/PairedTest.js

@@ -12,6 +12,18 @@
     exports.PairedTest = void 0;
     const StatisticalTestResultType_1 = require("./StatisticalTestResultType");
     class PairedTest {
+        /**
+         * Compares two classification algorithms based on their performances (accuracy or error rate). The method first
+         * checks the null hypothesis mu1 < mu2, if the test rejects this null hypothesis with alpha level of confidence, it
+         * decides mu1 > mu2. The algorithm then checks the null hypothesis mu1 > mu2, if the test rejects that null
+         * hypothesis with alpha level of confidence, if decides mu1 < mu2. If none of the two tests are rejected, it can not
+         * make a decision about the performances of algorithms.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @param alpha Alpha level defined for the statistical test.
+         * @return 1 if the performance of the first algorithm is larger than the second algorithm, -1 if the performance of
+         * the second algorithm is larger than the first algorithm, 0 if they have similar performance.
+         */
         compare(classifier1, classifier2, alpha) {
             let testResult1 = this.compareClassifiers(classifier1, classifier2);
             let testResult2 = this.compareClassifiers(classifier2, classifier1);

package/dist/StatisticalTest/PairedTest.js.map

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package/dist/StatisticalTest/Pairedt.d.ts

@@ -2,6 +2,18 @@ import { PairedTest } from "./PairedTest";
 import { ExperimentPerformance } from "../Performance/ExperimentPerformance";
 import { StatisticalTestResult } from "./StatisticalTestResult";
 export declare class Pairedt extends PairedTest {
+    /**
+     * Calculates the test statistic of the paired t test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Given the performances of two classifiers, the test statistic of the paired t test.
+     */
     private testStatistic;
+    /**
+     * Compares two classification algorithms based on their performances (accuracy or error rate) using paired t test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Statistical test result of the comparison.
+     */
     compareClassifiers(classifier1: ExperimentPerformance, classifier2: ExperimentPerformance): StatisticalTestResult;
 }

package/dist/StatisticalTest/Pairedt.js

@@ -14,6 +14,12 @@
     const StatisticalTestResult_1 = require("./StatisticalTestResult");
     const Distribution_1 = require("nlptoolkit-math/dist/Distribution");
     class Pairedt extends PairedTest_1.PairedTest {
+        /**
+         * Calculates the test statistic of the paired t test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Given the performances of two classifiers, the test statistic of the paired t test.
+         */
         testStatistic(classifier1, classifier2) {
             let difference = new Array();
             let sum = 0.0;
@@ -29,6 +35,12 @@
             let standardDeviation = Math.sqrt(sum / (classifier1.numberOfExperiments() - 1));
             return Math.sqrt(classifier1.numberOfExperiments()) * mean / standardDeviation;
         }
+        /**
+         * Compares two classification algorithms based on their performances (accuracy or error rate) using paired t test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Statistical test result of the comparison.
+         */
         compareClassifiers(classifier1, classifier2) {
             let statistic = this.testStatistic(classifier1, classifier2);
             let degreeOfFreedom = classifier1.numberOfExperiments() - 1;

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+{"version":3,"file":"Pairedt.js","sourceRoot":"","sources":["../../source/StatisticalTest/Pairedt.ts"],"names":[],"mappings":";;;;;;;;;;;;IAAA,6CAAwC;IAExC,mEAA8D;IAC9D,oEAA+D;IAE/D,MAAa,OAAQ,SAAQ,uBAAU;QAEnC;;;;;WAKG;QACK,aAAa,CAAC,WAAkC,EAAE,WAAkC;YACxF,IAAI,UAAU,GAAG,IAAI,KAAK,EAAU,CAAC;YACrC,IAAI,GAAG,GAAG,GAAG,CAAC;YACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,mBAAmB,EAAE,EAAE,CAAC,EAAE,EAAC;gBACvD,UAAU,CAAC,IAAI,CAAC,WAAW,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,WAAW,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC;gBAC3E,GAAG,IAAI,UAAU,CAAC,CAAC,CAAC,CAAC;aACxB;YACD,IAAI,IAAI,GAAG,GAAG,GAAG,WAAW,CAAC,mBAAmB,EAAE,CAAC;YACnD,GAAG,GAAG,GAAG,CAAC;YACV,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,mBAAmB,EAAE,EAAE,CAAC,EAAE,EAAC;gBACvD,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC;aAC1D;YACD,IAAI,iBAAiB,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,GAAG,CAAC,WAAW,CAAC,mBAAmB,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC;YACjF,OAAO,IAAI,CAAC,IAAI,CAAC,WAAW,CAAC,mBAAmB,EAAE,CAAC,GAAG,IAAI,GAAG,iBAAiB,CAAC;QACnF,CAAC;QAED;;;;;WAKG;QACH,kBAAkB,CAAC,WAAkC,EAAE,WAAkC;YACrF,IAAI,SAAS,GAAG,IAAI,CAAC,aAAa,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;YAC7D,IAAI,eAAe,GAAG,WAAW,CAAC,mBAAmB,EAAE,GAAG,CAAC,CAAC;YAC5D,OAAO,IAAI,6CAAqB,CAAC,2BAAY,CAAC,aAAa,CAAC,SAAS,EAAE,eAAe,CAAC,EAAE,KAAK,CAAC,CAAC;QACpG,CAAC;KAEJ;IApCD,0BAoCC"}

package/dist/StatisticalTest/Sign.d.ts

@@ -2,7 +2,24 @@ import { PairedTest } from "./PairedTest";
 import { ExperimentPerformance } from "../Performance/ExperimentPerformance";
 import { StatisticalTestResult } from "./StatisticalTestResult";
 export declare class Sign extends PairedTest {
+    /**
+     * Calculates n!.
+     * @param n n is n!
+     * @return n!.
+     */
     private factorial;
+    /**
+     * Calculates m of n that is C(n, m)
+     * @param m m in C(m, n)
+     * @param n n in C(m, n)
+     * @return C(m, n)
+     */
     private binomial;
+    /**
+     * Compares two classification algorithms based on their performances (accuracy or error rate) using sign test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Statistical test result of the comparison.
+     */
     compareClassifiers(classifier1: ExperimentPerformance, classifier2: ExperimentPerformance): StatisticalTestResult;
 }

package/dist/StatisticalTest/Sign.js

@@ -13,12 +13,23 @@
     const PairedTest_1 = require("./PairedTest");
     const StatisticalTestResult_1 = require("./StatisticalTestResult");
     class Sign extends PairedTest_1.PairedTest {
+        /**
+         * Calculates n!.
+         * @param n n is n!
+         * @return n!.
+         */
         factorial(n) {
             let result = 1;
             for (let i = 2; i <= n; i++)
                 result *= i;
             return result;
         }
+        /**
+         * Calculates m of n that is C(n, m)
+         * @param m m in C(m, n)
+         * @param n n in C(m, n)
+         * @return C(m, n)
+         */
         binomial(m, n) {
             if (n == 0 || m == n) {
                 return 1;
@@ -27,6 +38,12 @@
                 return this.factorial(m) / (this.factorial(n) * this.factorial(m - n));
             }
         }
+        /**
+         * Compares two classification algorithms based on their performances (accuracy or error rate) using sign test.
+         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+         * @return Statistical test result of the comparison.
+         */
         compareClassifiers(classifier1, classifier2) {
             let plus = 0, minus = 0;
             for (let i = 0; i < classifier1.numberOfExperiments(); i++) {

package/dist/StatisticalTest/Sign.js.map

@@ -1 +1 @@
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package/dist/StatisticalTest/StatisticalTestResult.d.ts

@@ -2,8 +2,38 @@ import { StatisticalTestResultType } from "./StatisticalTestResultType";
 export declare class StatisticalTestResult {
     private readonly pValue;
     private readonly onlyTwoTailed;
+    /**
+     * Constructor of the StatisticalTestResult. It sets the attribute values.
+     * @param pValue p value of the statistical test result
+     * @param onlyTwoTailed True, if this test applicable only two tailed tests, false otherwise.
+     */
     constructor(pValue: number, onlyTwoTailed: boolean);
+    /**
+     * Returns reject or failed to reject, depending on the alpha level and p value of the statistical test that checks
+     * one tailed null hypothesis such as mu1 < mu2. If p value is less than the alpha level, the test rejects the null
+     * hypothesis. Otherwise, it fails to reject the null hypothesis.
+     * @param alpha Alpha level of the test
+     * @return If p value is less than the alpha level, the test rejects the null hypothesis. Otherwise, it fails to
+     * reject the null hypothesis.
+     */
     oneTailed(alpha: number): StatisticalTestResultType;
+    /**
+     * Returns reject or failed to reject, depending on the alpha level and p value of the statistical test that checks
+     * one tailed null hypothesis such as mu1 < mu2 or two tailed null hypothesis such as mu1 = mu2. If the null
+     * hypothesis is two tailed, and p value is less than the alpha level, the test rejects the null hypothesis.
+     * Otherwise, it fails to reject the null hypothesis. If the null  hypothesis is one tailed, and p value is less
+     * than alpha / 2 or p value is larger than 1 - alpha / 2, the test  rejects the null  hypothesis. Otherwise, it
+     * fails to reject the null hypothesis.
+     * @param alpha Alpha level of the test
+     * @return If the null  hypothesis is two tailed, and p value is less than the alpha level, the test rejects the
+     * null hypothesis.  Otherwise, it fails to reject the null hypothesis. If the null  hypothesis is one tailed, and
+     * p value is less  than alpha / 2 or p value is larger than 1 - alpha / 2, the test  rejects the null  hypothesis.
+     * Otherwise, it  fails to reject the null hypothesis.
+     */
     twoTailed(alpha: number): StatisticalTestResultType;
+    /**
+     * Accessor for the p value of the statistical test result.
+     * @return p value of the statistical test result
+     */
     getPValue(): number;
 }

package/dist/StatisticalTest/StatisticalTestResult.js

@@ -12,10 +12,23 @@
     exports.StatisticalTestResult = void 0;
     const StatisticalTestResultType_1 = require("./StatisticalTestResultType");
     class StatisticalTestResult {
+        /**
+         * Constructor of the StatisticalTestResult. It sets the attribute values.
+         * @param pValue p value of the statistical test result
+         * @param onlyTwoTailed True, if this test applicable only two tailed tests, false otherwise.
+         */
         constructor(pValue, onlyTwoTailed) {
             this.pValue = pValue;
             this.onlyTwoTailed = onlyTwoTailed;
         }
+        /**
+         * Returns reject or failed to reject, depending on the alpha level and p value of the statistical test that checks
+         * one tailed null hypothesis such as mu1 < mu2. If p value is less than the alpha level, the test rejects the null
+         * hypothesis. Otherwise, it fails to reject the null hypothesis.
+         * @param alpha Alpha level of the test
+         * @return If p value is less than the alpha level, the test rejects the null hypothesis. Otherwise, it fails to
+         * reject the null hypothesis.
+         */
         oneTailed(alpha) {
             if (!this.onlyTwoTailed) {
                 if (this.pValue < alpha) {
@@ -26,6 +39,19 @@
                 }
             }
         }
+        /**
+         * Returns reject or failed to reject, depending on the alpha level and p value of the statistical test that checks
+         * one tailed null hypothesis such as mu1 < mu2 or two tailed null hypothesis such as mu1 = mu2. If the null
+         * hypothesis is two tailed, and p value is less than the alpha level, the test rejects the null hypothesis.
+         * Otherwise, it fails to reject the null hypothesis. If the null  hypothesis is one tailed, and p value is less
+         * than alpha / 2 or p value is larger than 1 - alpha / 2, the test  rejects the null  hypothesis. Otherwise, it
+         * fails to reject the null hypothesis.
+         * @param alpha Alpha level of the test
+         * @return If the null  hypothesis is two tailed, and p value is less than the alpha level, the test rejects the
+         * null hypothesis.  Otherwise, it fails to reject the null hypothesis. If the null  hypothesis is one tailed, and
+         * p value is less  than alpha / 2 or p value is larger than 1 - alpha / 2, the test  rejects the null  hypothesis.
+         * Otherwise, it  fails to reject the null hypothesis.
+         */
         twoTailed(alpha) {
             if (this.onlyTwoTailed) {
                 if (this.pValue < alpha) {
@@ -44,6 +70,10 @@
                 }
             }
         }
+        /**
+         * Accessor for the p value of the statistical test result.
+         * @return p value of the statistical test result
+         */
         getPValue() {
             return this.pValue;
         }

package/dist/StatisticalTest/StatisticalTestResult.js.map

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