nlm-memory 0.5.6 → 0.5.7

package/README.md

@@ -124,6 +124,7 @@ Container-hosted agents (Hermes WebUI, Codex CLI, etc.) hit the Streamable-HTTP
 | `recall_facts` | Search structured facts: decisions, open questions, project state. Filterable by entity and kind. |
 | `get_fact_history` | Full version history of one fact — how a decision evolved over time. |
 | `cite_session` | Mark a session as explicitly referenced. Drives the `useful_hit_rate` metric and the future learned reranker. |
+| `mark_superseded` | Retroactively retire a stale session and point it at the newer one that replaces it. The editable-timeline write path — see [docs/supersedence.md](docs/supersedence.md). |
 
 ---
 

package/dist/core/adapters/codex.d.ts

@@ -0,0 +1,40 @@
+/**
+ * Codex adapter.
+ *
+ * Reads ~/.codex/sessions/YYYY/MM/DD/rollout-*.jsonl files. Each rollout is
+ * one session containing a `session_meta` header line plus a stream of
+ * `event_msg`, `response_item`, `turn_context`, and `token_count` events.
+ *
+ * Conversation extraction prefers `event_msg` payloads (`user_message`,
+ * `agent_message`) over `response_item.message` payloads, because Codex
+ * stuffs AGENTS.md and permission preambles into a synthetic
+ * `response_item.message` with role=user on session start. Pulling the
+ * conversation from `event_msg` sidesteps that envelope entirely without
+ * needing a regex strip.
+ *
+ * Tool surface: `response_item.function_call` / `custom_tool_call` →
+ * `[tool_use: <name>]`. `response_item.function_call_output` /
+ * `custom_tool_call_output` → `[tool_result: <preview>]`. Reasoning,
+ * web_search_call, turn_context, token_count, and task lifecycle events
+ * are intentionally dropped — they are noise for recall purposes.
+ *
+ * Format reference: verified against Edward's ~/.codex/sessions on
+ * 2026-05-30 (codex 0.134.0).
+ */
+import type { DetectionResult, DiscoverOptions, SessionChunk, TranscriptAdapter } from "../../ports/transcript-adapter.js";
+export interface CodexAdapterOptions {
+    readonly sessionsPath?: string;
+    readonly idleMinutes?: number;
+}
+export declare class CodexAdapter implements TranscriptAdapter {
+    readonly name = "codex";
+    readonly runtimeVersion = "codex/1.0";
+    readonly transcriptKind = "codex-jsonl";
+    private readonly sessionsPath;
+    readonly idleMinutes: number;
+    constructor(opts?: CodexAdapterOptions);
+    detect(): DetectionResult;
+    discover(options?: DiscoverOptions): Promise<ReadonlyArray<string>>;
+    parseSession(path: string): Promise<SessionChunk | null>;
+    private walk;
+}

package/dist/core/adapters/codex.js

@@ -0,0 +1,223 @@
+/**
+ * Codex adapter.
+ *
+ * Reads ~/.codex/sessions/YYYY/MM/DD/rollout-*.jsonl files. Each rollout is
+ * one session containing a `session_meta` header line plus a stream of
+ * `event_msg`, `response_item`, `turn_context`, and `token_count` events.
+ *
+ * Conversation extraction prefers `event_msg` payloads (`user_message`,
+ * `agent_message`) over `response_item.message` payloads, because Codex
+ * stuffs AGENTS.md and permission preambles into a synthetic
+ * `response_item.message` with role=user on session start. Pulling the
+ * conversation from `event_msg` sidesteps that envelope entirely without
+ * needing a regex strip.
+ *
+ * Tool surface: `response_item.function_call` / `custom_tool_call` →
+ * `[tool_use: <name>]`. `response_item.function_call_output` /
+ * `custom_tool_call_output` → `[tool_result: <preview>]`. Reasoning,
+ * web_search_call, turn_context, token_count, and task lifecycle events
+ * are intentionally dropped — they are noise for recall purposes.
+ *
+ * Format reference: verified against Edward's ~/.codex/sessions on
+ * 2026-05-30 (codex 0.134.0).
+ */
+import { promises as fs } from "node:fs";
+import { existsSync, statSync } from "node:fs";
+import { basename, join } from "node:path";
+import { homedir } from "node:os";
+import { durationMinutes, safeSessionId } from "./common.js";
+const TOOL_RESULT_PREVIEW_CHARS = 240;
+export class CodexAdapter {
+    name = "codex";
+    runtimeVersion = "codex/1.0";
+    transcriptKind = "codex-jsonl";
+    sessionsPath;
+    idleMinutes;
+    constructor(opts = {}) {
+        this.sessionsPath =
+            opts.sessionsPath ?? join(homedir(), ".codex", "sessions");
+        this.idleMinutes = opts.idleMinutes ?? 15;
+    }
+    detect() {
+        const p = join(homedir(), ".codex", "sessions");
+        if (existsSync(p) && statSync(p).isDirectory()) {
+            return { adapterName: this.name, enabled: true, path: p, hint: null };
+        }
+        return {
+            adapterName: this.name,
+            enabled: false,
+            path: null,
+            hint: "Codex not detected — ~/.codex/sessions/ missing. Install with `npm i -g @openai/codex`.",
+        };
+    }
+    async discover(options = {}) {
+        if (!existsSync(this.sessionsPath))
+            return [];
+        const found = [];
+        const seen = new Set();
+        await this.walk(this.sessionsPath, seen, found, options.since);
+        found.sort((a, b) => a.mtime - b.mtime);
+        return found.map((f) => f.path);
+    }
+    async parseSession(path) {
+        const turns = [];
+        let startedAt = "";
+        let endedAt = "";
+        let projectDir = "";
+        let runtimeSessionId = "";
+        let totalBytes = 0;
+        let raw;
+        try {
+            raw = await fs.readFile(path, "utf8");
+        }
+        catch {
+            return null;
+        }
+        for (const line of raw.split("\n")) {
+            totalBytes += Buffer.byteLength(line, "utf8") + 1;
+            const trimmed = line.trim();
+            if (!trimmed)
+                continue;
+            let evt;
+            try {
+                evt = JSON.parse(trimmed);
+            }
+            catch {
+                continue;
+            }
+            const outerType = evt["type"];
+            const outerTs = typeof evt["timestamp"] === "string" ? evt["timestamp"] : "";
+            const payload = evt["payload"] ?? {};
+            if (outerType === "session_meta") {
+                if (typeof payload["id"] === "string")
+                    runtimeSessionId = payload["id"];
+                if (!projectDir && typeof payload["cwd"] === "string") {
+                    projectDir = payload["cwd"];
+                }
+                const metaTs = typeof payload["timestamp"] === "string" ? payload["timestamp"] : outerTs;
+                if (metaTs && !startedAt)
+                    startedAt = metaTs;
+                if (metaTs)
+                    endedAt = metaTs;
+                continue;
+            }
+            const turn = extractTurn(outerType, payload, outerTs);
+            if (!turn)
+                continue;
+            if (turn.timestamp && !startedAt)
+                startedAt = turn.timestamp;
+            if (turn.timestamp)
+                endedAt = turn.timestamp;
+            turns.push(turn);
+        }
+        if (turns.length === 0)
+            return null;
+        const transcript = turns.map((t) => `[${t.role}] ${t.text}`).join("\n\n");
+        const duration = durationMinutes(startedAt, endedAt);
+        const label = provisionalLabel(turns);
+        const stem = basename(path, ".jsonl");
+        const rawId = runtimeSessionId || stem;
+        return {
+            id: safeSessionId("codex", rawId),
+            runtime: this.runtimeVersion,
+            runtimeSessionId: runtimeSessionId || stem,
+            sourcePath: path,
+            startedAt,
+            endedAt,
+            durationMin: duration,
+            turnCount: turns.length,
+            byteRange: [0, totalBytes],
+            projectDir,
+            gitBranch: "",
+            text: transcript,
+            label,
+        };
+    }
+    async walk(dir, seen, out, since) {
+        let entries;
+        try {
+            entries = await fs.readdir(dir, { withFileTypes: true });
+        }
+        catch {
+            return;
+        }
+        for (const ent of entries) {
+            const full = join(dir, ent.name);
+            if (ent.isDirectory()) {
+                await this.walk(full, seen, out, since);
+            }
+            else if (ent.isFile() && ent.name.endsWith(".jsonl")) {
+                if (seen.has(full))
+                    continue;
+                seen.add(full);
+                let st;
+                try {
+                    st = await fs.stat(full);
+                }
+                catch {
+                    continue;
+                }
+                if (st.size === 0)
+                    continue;
+                if (since && st.mtime < since)
+                    continue;
+                out.push({ mtime: st.mtimeMs, path: full });
+            }
+        }
+    }
+}
+// ── event extraction ─────────────────────────────────────────────────────
+function extractTurn(outerType, payload, outerTs) {
+    if (outerType === "event_msg") {
+        const pType = payload["type"];
+        if (pType === "user_message") {
+            const text = typeof payload["message"] === "string" ? payload["message"] : "";
+            if (!text.trim())
+                return null;
+            return { role: "user", text, timestamp: outerTs };
+        }
+        if (pType === "agent_message") {
+            const phase = payload["phase"];
+            if (phase && phase !== "final_answer")
+                return null;
+            const text = typeof payload["message"] === "string" ? payload["message"] : "";
+            if (!text.trim())
+                return null;
+            return { role: "assistant", text, timestamp: outerTs };
+        }
+        return null;
+    }
+    if (outerType === "response_item") {
+        const pType = payload["type"];
+        if (pType === "function_call" || pType === "custom_tool_call") {
+            const name = typeof payload["name"] === "string" ? payload["name"] : "tool";
+            return { role: "assistant", text: `[tool_use: ${name}]`, timestamp: outerTs };
+        }
+        if (pType === "function_call_output" || pType === "custom_tool_call_output") {
+            const output = payload["output"];
+            const outStr = typeof output === "string" ? output : "";
+            if (!outStr)
+                return null;
+            const preview = outStr.slice(0, TOOL_RESULT_PREVIEW_CHARS);
+            const ellipsis = outStr.length > TOOL_RESULT_PREVIEW_CHARS ? "…" : "";
+            return {
+                role: "assistant",
+                text: `[tool_result: ${preview}${ellipsis}]`,
+                timestamp: outerTs,
+            };
+        }
+        return null;
+    }
+    return null;
+}
+function provisionalLabel(turns) {
+    for (const t of turns) {
+        if (t.role !== "user")
+            continue;
+        const firstLine = t.text.split("\n", 1)[0]?.trim();
+        if (firstLine)
+            return firstLine.slice(0, 80);
+    }
+    return "Untitled session";
+}
+//# sourceMappingURL=codex.js.map

package/dist/core/adapters/codex.js.map

@@ -0,0 +1 @@
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package/dist/core/adapters/from-source.js

@@ -8,6 +8,7 @@
  */
 import { AiderAdapter } from "./aider.js";
 import { ClaudeCodeAdapter } from "./claude-code.js";
+import { CodexAdapter } from "./codex.js";
 import { CursorAdapter } from "./cursor.js";
 import { HermesAdapter } from "./hermes.js";
 import { HermesAgentAdapter } from "./hermes-agent.js";
@@ -25,6 +26,10 @@ export function adapterFromSource(source) {
             return source.pathOrUrl
                 ? new ClaudeCodeAdapter({ projectsPath: source.pathOrUrl })
                 : new ClaudeCodeAdapter();
+        case "codex":
+            return source.pathOrUrl
+                ? new CodexAdapter({ sessionsPath: source.pathOrUrl })
+                : new CodexAdapter();
         case "cursor":
             return source.pathOrUrl
                 ? new CursorAdapter({ dbPath: source.pathOrUrl })

package/dist/core/adapters/from-source.js.map

@@ -1 +1 @@
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+{"version":3,"file":"from-source.js","sourceRoot":"","sources":["../../../src/core/adapters/from-source.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAIH,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAC1C,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,mBAAmB,EAA2B,MAAM,oBAAoB,CAAC;AAClF,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAChD,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AACpC,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAEhD,MAAM,UAAU,iBAAiB,CAAC,MAAiB;IACjD,QAAQ,MAAM,CAAC,IAAI,EAAE,CAAC;QACpB,KAAK,OAAO;YACV,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,YAAY,CAAC,EAAE,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACrD,CAAC,CAAC,IAAI,YAAY,EAAE,CAAC;QACzB,KAAK,aAAa;YAChB,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,iBAAiB,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBAC3D,CAAC,CAAC,IAAI,iBAAiB,EAAE,CAAC;QAC9B,KAAK,OAAO;YACV,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,YAAY,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACtD,CAAC,CAAC,IAAI,YAAY,EAAE,CAAC;QACzB,KAAK,QAAQ;YACX,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,aAAa,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACjD,CAAC,CAAC,IAAI,aAAa,EAAE,CAAC;QAC1B,KAAK,QAAQ;YACX,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,aAAa,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACvD,CAAC,CAAC,IAAI,aAAa,EAAE,CAAC;QAC1B,KAAK,cAAc;YACjB,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,kBAAkB,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACtD,CAAC,CAAC,IAAI,kBAAkB,EAAE,CAAC;QAC/B,KAAK,UAAU;YACb,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,eAAe,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACnD,CAAC,CAAC,IAAI,eAAe,EAAE,CAAC;QAC5B,KAAK,IAAI;YACP,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,SAAS,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACnD,CAAC,CAAC,IAAI,SAAS,EAAE,CAAC;QACtB,KAAK,UAAU;YACb,OAAO,MAAM,CAAC,SAAS;gBACrB,CAAC,CAAC,IAAI,eAAe,CAAC,EAAE,OAAO,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;gBACpD,CAAC,CAAC,IAAI,eAAe,EAAE,CAAC;QAC5B,KAAK,eAAe;YAClB,IAAI,CAAC,MAAM,CAAC,SAAS;gBAAE,OAAO,IAAI,CAAC;YACnC,OAAO,IAAI,mBAAmB,CAAC;gBAC7B,IAAI,EAAE,SAAS,MAAM,CAAC,IAAI,EAAE;gBAC5B,IAAI,EAAE,MAAM,CAAC,SAAS;gBACtB,OAAO,EAAE,MAAM,CAAC,YAAY;gBAC5B,MAAM,EAAE,MAAM,CAAC,WAAiC;aACjD,CAAC,CAAC;QACL,KAAK,SAAS;YACZ,OAAO,IAAI,CAAC;IAChB,CAAC;AACH,CAAC"}

package/dist/core/sources/source-registry.d.ts

@@ -13,7 +13,7 @@
  * See docs/plans/desktop-product.md (Phase 0).
  */
 import type Database from "better-sqlite3";
-export type SourceKind = "claude-code" | "hermes" | "hermes-agent" | "aider" | "cursor" | "windsurf" | "opencode" | "pi" | "jsonl-generic" | "webhook";
+export type SourceKind = "claude-code" | "codex" | "hermes" | "hermes-agent" | "aider" | "cursor" | "windsurf" | "opencode" | "pi" | "jsonl-generic" | "webhook";
 export interface SourceRow {
     readonly id: number;
     readonly kind: SourceKind;

package/dist/core/sources/source-registry.js

@@ -152,6 +152,8 @@ export class SourceRegistry {
             return;
         const claudePath = process.env["NLM_CLAUDE_PROJECTS_PATH"]
             ?? join(homedir(), ".claude", "projects");
+        const codexPath = process.env["NLM_CODEX_SESSIONS_PATH"]
+            ?? join(homedir(), ".codex", "sessions");
         const hermesPath = process.env["NLM_HERMES_SESSIONS_PATH"]
             ?? join(homedir(), ".hermes", "sessions");
         const piPath = process.env["PI_SESSIONS_PATH"]
@@ -169,6 +171,13 @@ export class SourceRegistry {
                 runtimeLabel: "claude-code/1.0",
                 enabled: existsSync(claudePath),
             },
+            {
+                kind: "codex",
+                name: "Codex",
+                pathOrUrl: codexPath,
+                runtimeLabel: "codex/1.0",
+                enabled: existsSync(codexPath),
+            },
             {
                 kind: "hermes",
                 name: "Hermes",

package/dist/core/sources/source-registry.js.map

@@ -1 +1 @@
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+{"version":3,"file":"source-registry.js","sourceRoot":"","sources":["../../../src/core/sources/source-registry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AAClC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,kBAAkB,IAAI,uBAAuB,EAAE,MAAM,sBAAsB,CAAC;AACrF,OAAO,EAAE,aAAa,IAAI,mBAAmB,EAAE,MAAM,uBAAuB,CAAC;AAC7E,OAAO,EAAE,aAAa,IAAI,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AACxF,OAAO,EAAE,aAAa,IAAI,qBAAqB,EAAE,MAAM,yBAAyB,CAAC;AACjF,OAAO,EAAE,cAAc,IAAI,sBAAsB,EAAE,MAAM,yBAAyB,CAAC;AAkDnF,SAAS,SAAS,CAAC,CAAc,EAAE,gBAA+B,IAAI;IACpE,IAAI,MAAM,GAA4B,EAAE,CAAC;IACzC,IAAI,CAAC;QACH,MAAM,GAAG,CAAC,CAAC,YAAY,CAAC,CAAC,CAAE,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,YAAY,CAA6B,CAAC,CAAC,CAAC,EAAE,CAAC;IACzF,CAAC;IAAC,MAAM,CAAC;QACP,MAAM,GAAG,EAAE,CAAC;IACd,CAAC;IACD,OAAO;QACL,EAAE,EAAE,CAAC,CAAC,EAAE;QACR,IAAI,EAAE,CAAC,CAAC,IAAkB;QAC1B,IAAI,EAAE,CAAC,CAAC,IAAI;QACZ,SAAS,EAAE,CAAC,CAAC,WAAW;QACxB,YAAY,EAAE,CAAC,CAAC,aAAa;QAC7B,WAAW,EAAE,MAAM;QACnB,OAAO,EAAE,CAAC,CAAC,OAAO,KAAK,CAAC;QACxB,KAAK,EAAE,aAAa;QACpB,QAAQ,EAAE,CAAC,CAAC,KAAK,KAAK,IAAI,IAAI,CAAC,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC;QAChD,SAAS,EAAE,CAAC,CAAC,UAAU;QACvB,SAAS,EAAE,CAAC,CAAC,UAAU;KACxB,CAAC;AACJ,CAAC;AAED,SAAS,SAAS;IAChB,OAAO,OAAO,WAAW,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;AAClD,CAAC;AAED,MAAM,OAAO,cAAc;IACI;IAA7B,YAA6B,EAAqB;QAArB,OAAE,GAAF,EAAE,CAAmB;IAAG,CAAC;IAEtD,IAAI;QACF,MAAM,IAAI,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CAC1B,uCAAuC,CACxC,CAAC,GAAG,EAAE,CAAC;QACR,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;IACvC,CAAC;IAED,GAAG,CAAC,EAAU;QACZ,MAAM,GAAG,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CACzB,oCAAoC,CACrC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACV,OAAO,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACrC,CAAC;IAED,SAAS,CAAC,IAAY;QACpB,MAAM,GAAG,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CACzB,sCAAsC,CACvC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACZ,OAAO,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACrC,CAAC;IAED,MAAM,CAAC,KAAmB;QACxB,MAAM,KAAK,GAAG,KAAK,CAAC,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;QAC5D,MAAM,IAAI,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CAAC;;;KAG5B,CAAC,CAAC;QACH,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC;YACtB,IAAI,EAAE,KAAK,CAAC,IAAI;YAChB,IAAI,EAAE,KAAK,CAAC,IAAI;YAChB,WAAW,EAAE,KAAK,CAAC,SAAS,IAAI,IAAI;YACpC,aAAa,EAAE,KAAK,CAAC,YAAY;YACjC,YAAY,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,WAAW,IAAI,EAAE,CAAC;YACrD,OAAO,EAAE,KAAK,CAAC,OAAO,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YACxC,KAAK;SACN,CAAC,CAAC;QACH,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,eAAe,CAAC,CAAC;QAC1C,MAAM,KAAK,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CAC3B,oCAAoC,CACrC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACV,IAAI,CAAC,KAAK;YAAE,MAAM,IAAI,KAAK,CAAC,8BAA8B,EAAE,yBAAyB,CAAC,CAAC;QACvF,oEAAoE;QACpE,qDAAqD;QACrD,OAAO,SAAS,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACjC,CAAC;IAED,oEAAoE;IACpE,WAAW,CAAC,KAAa;QACvB,IAAI,CAAC,KAAK;YAAE,OAAO,IAAI,CAAC;QACxB,MAAM,GAAG,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CACzB,uCAAuC,CACxC,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;QACb,OAAO,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACrC,CAAC;IAED,4EAA4E;IAC5E,QAAQ,CAAC,EAAU;QACjB,MAAM,GAAG,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CACzB,wCAAwC,CACzC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACV,OAAO,GAAG,EAAE,KAAK,IAAI,IAAI,CAAC;IAC5B,CAAC;IAED,yDAAyD;IACzD,eAAe,CAAC,EAAU;QACxB,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QAC7B,IAAI,CAAC,OAAO,IAAI,OAAO,CAAC,IAAI,KAAK,SAAS;YAAE,OAAO,IAAI,CAAC;QACxD,MAAM,KAAK,GAAG,SAAS,EAAE,CAAC;QAC1B,IAAI,CAAC,EAAE,CAAC,OAAO,CAAC,yEAAyE,CAAC;aACvF,GAAG,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;QAClB,OAAO,KAAK,CAAC;IACf,CAAC;IAED,MAAM,CAAC,EAAU,EAAE,KAAmB;QACpC,MAAM,MAAM,GAAa,EAAE,CAAC;QAC5B,MAAM,MAAM,GAA4B,EAAE,EAAE,EAAE,CAAC;QAC/C,IAAI,KAAK,CAAC,IAAI,KAAK,SAAS,EAAE,CAAC;YAAC,MAAM,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;YAAC,MAAM,CAAC,MAAM,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC;QAAC,CAAC;QAC3F,IAAI,KAAK,CAAC,SAAS,KAAK,SAAS,EAAE,CAAC;YAAC,MAAM,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;YAAC,MAAM,CAAC,MAAM,CAAC,GAAG,KAAK,CAAC,SAAS,CAAC;QAAC,CAAC;QAC5G,IAAI,KAAK,CAAC,YAAY,KAAK,SAAS,EAAE,CAAC;YAAC,MAAM,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;YAAC,MAAM,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,YAAY,CAAC;QAAC,CAAC;QAChH,IAAI,KAAK,CAAC,WAAW,KAAK,SAAS,EAAE,CAAC;YAAC,MAAM,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;YAAC,MAAM,CAAC,KAAK,CAAC,GAAG,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC;QAAC,CAAC;QAC/H,IAAI,KAAK,CAAC,OAAO,KAAK,SAAS,EAAE,CAAC;YAAC,MAAM,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC;YAAC,MAAM,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAAC,CAAC;QACxG,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QAC7C,MAAM,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC;QAC5C,IAAI,CAAC,EAAE,CAAC,OAAO,CAAC,sBAAsB,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QACtF,OAAO,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IACtB,CAAC;IAED,MAAM,CAAC,EAAU;QACf,MAAM,MAAM,GAAG,IAAI,CAAC,EAAE,CAAC,OAAO,CAAC,kCAAkC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QAC3E,OAAO,MAAM,CAAC,OAAO,GAAG,CAAC,CAAC;IAC5B,CAAC;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package/dist/core/storage/sqlite-session-store.d.ts

@@ -143,6 +143,7 @@ export declare class SqliteSessionStore implements SessionStore {
      */
     keywordSearch(query: string, limit: number): Promise<ReadonlyArray<KeywordNeighbor>>;
     updateStatus(sessionId: string, status: SessionStatus): Promise<void>;
+    markSuperseded(predecessorId: string, successorId: string): Promise<void>;
     insertSessionForTest(session: Session): void;
     insertEdgeForTest(fromSession: string, toSession: string, kind?: "supersedes" | "continues"): void;
     insertEmbeddingForTest(sessionId: string, vector: Float32Array): void;

package/dist/core/storage/sqlite-session-store.js

@@ -443,6 +443,30 @@ export class SqliteSessionStore {
             .prepare("UPDATE sessions SET status = ?, updated_at = datetime('now') WHERE id = ?")
             .run(status, sessionId);
     }
+    async markSuperseded(predecessorId, successorId) {
+        if (predecessorId === successorId) {
+            throw new Error("A session cannot supersede itself");
+        }
+        const existsStmt = this.db.prepare("SELECT COUNT(*) AS c FROM sessions WHERE id = ?");
+        const txn = this.db.transaction(() => {
+            const predExists = (existsStmt.get(predecessorId)?.c ?? 0) > 0;
+            if (!predExists) {
+                throw new Error(`predecessor session ${predecessorId} not found`);
+            }
+            const succExists = (existsStmt.get(successorId)?.c ?? 0) > 0;
+            if (!succExists) {
+                throw new Error(`successor session ${successorId} not found`);
+            }
+            this.db
+                .prepare(`INSERT OR IGNORE INTO session_edges (from_session, to_session, kind)
+           VALUES (?, ?, 'supersedes')`)
+                .run(successorId, predecessorId);
+            this.db
+                .prepare("UPDATE sessions SET status = 'superseded', updated_at = datetime('now') WHERE id = ?")
+                .run(predecessorId);
+        });
+        txn();
+    }
     // ── insert helpers used by tests / future ingest path ─────────────────
     insertSessionForTest(session) {
         const stmt = this.db.prepare(`

package/dist/core/storage/sqlite-session-store.js.map

@@ -1 +1 @@
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package/dist/core/storage/supersedence-log.d.ts

@@ -0,0 +1,16 @@
+/**
+ * Append-only JSONL audit log for post-hoc supersedence mutations. One line
+ * per `mark_superseded` MCP call (or future UI action). Atomic-on-insert
+ * supersedence at ingest time is not logged here — that lineage is already
+ * implicit in the session_edges row's predecessor reference.
+ *
+ * Path defaults to ~/.nlm/supersedence-log.jsonl, overridable via
+ * NLM_SUPERSEDENCE_LOG. Telemetry path — never raises.
+ */
+export interface SupersedenceEntry {
+    readonly predecessorId: string;
+    readonly successorId: string;
+    readonly reason?: string;
+    readonly source?: string;
+}
+export declare function appendSupersedence(entry: SupersedenceEntry, logPath?: string): Promise<void>;

package/dist/core/storage/supersedence-log.js

@@ -0,0 +1,33 @@
+/**
+ * Append-only JSONL audit log for post-hoc supersedence mutations. One line
+ * per `mark_superseded` MCP call (or future UI action). Atomic-on-insert
+ * supersedence at ingest time is not logged here — that lineage is already
+ * implicit in the session_edges row's predecessor reference.
+ *
+ * Path defaults to ~/.nlm/supersedence-log.jsonl, overridable via
+ * NLM_SUPERSEDENCE_LOG. Telemetry path — never raises.
+ */
+import { appendFile, mkdir } from "node:fs/promises";
+import { dirname, join } from "node:path";
+import { homedir } from "node:os";
+function defaultLogPath() {
+    return (process.env["NLM_SUPERSEDENCE_LOG"] ??
+        join(homedir(), ".nlm", "supersedence-log.jsonl"));
+}
+export async function appendSupersedence(entry, logPath = defaultLogPath()) {
+    try {
+        await mkdir(dirname(logPath), { recursive: true });
+        const payload = {
+            ts: new Date().toISOString(),
+            predecessor_id: entry.predecessorId,
+            successor_id: entry.successorId,
+            ...(entry.reason !== undefined ? { reason: entry.reason } : {}),
+            ...(entry.source !== undefined ? { source: entry.source } : {}),
+        };
+        await appendFile(logPath, JSON.stringify(payload) + "\n", "utf8");
+    }
+    catch {
+        // Telemetry failure must never break the call path.
+    }
+}
+//# sourceMappingURL=supersedence-log.js.map

package/dist/core/storage/supersedence-log.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"supersedence-log.js","sourceRoot":"","sources":["../../../src/core/storage/supersedence-log.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACrD,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AASlC,SAAS,cAAc;IACrB,OAAO,CACL,OAAO,CAAC,GAAG,CAAC,sBAAsB,CAAC;QACnC,IAAI,CAAC,OAAO,EAAE,EAAE,MAAM,EAAE,wBAAwB,CAAC,CAClD,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,KAAwB,EACxB,UAAkB,cAAc,EAAE;IAElC,IAAI,CAAC;QACH,MAAM,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QACnD,MAAM,OAAO,GAAG;YACd,EAAE,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YAC5B,cAAc,EAAE,KAAK,CAAC,aAAa;YACnC,YAAY,EAAE,KAAK,CAAC,WAAW;YAC/B,GAAG,CAAC,KAAK,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YAC/D,GAAG,CAAC,KAAK,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;SAChE,CAAC;QACF,MAAM,UAAU,CAAC,OAAO,EAAE,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,IAAI,EAAE,MAAM,CAAC,CAAC;IACpE,CAAC;IAAC,MAAM,CAAC;QACP,oDAAoD;IACtD,CAAC;AACH,CAAC"}

package/dist/http/app.js

@@ -1023,7 +1023,7 @@ function parseActionInput(raw) {
     };
 }
 const VALID_SOURCE_KINDS = [
-    "claude-code", "hermes", "pi", "jsonl-generic", "webhook",
+    "claude-code", "codex", "hermes", "pi", "jsonl-generic", "webhook",
 ];
 function parseSourceInsert(raw) {
     if (!raw || typeof raw !== "object")