nlm-memory 0.21.0 → 0.21.12

package/dist/core/exemplars/embed-backfill.js.map

@@ -1 +1 @@
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+{"version":3,"file":"embed-backfill.js","sourceRoot":"","sources":["../../../src/core/exemplars/embed-backfill.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AACtC,OAAO,KAAK,SAAS,MAAM,YAAY,CAAC;AAGxC,OAAO,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAwBnD,MAAM,CAAC,KAAK,UAAU,0BAA0B,CAC9C,IAA6B;IAE7B,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC;QAC7B,OAAO,EAAE,KAAK,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC;IAChE,CAAC;IAED,MAAM,EAAE,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC;IACzD,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEnB,IAAI,IAAkB,CAAC;IACvB,IAAI,CAAC;QACH,MAAM,GAAG,GACP,4DAA4D;YAC5D,iEAAiE;YACjE,uBAAuB;YACvB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,UAAU,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QACzD,IAAI,GAAG,EAAE,CAAC,OAAO,CAAiB,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC;IAC/C,CAAC;YAAS,CAAC;QACT,EAAE,CAAC,KAAK,EAAE,CAAC;IACb,CAAC;IAED,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC;IAC1B,IAAI,SAAS,GAAG,CAAC,CAAC;IAClB,IAAI,MAAM,GAAG,CAAC,CAAC;IAEf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACrC,MAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAE,CAAC;QACrB,MAAM,GAAG,GAAG,CAAC,GAAG,CAAC,CAAC;QAClB,MAAM,IAAI,GAAG,gBAAgB,CAAC,GAAG,CAAC,YAAY,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;QAE1D,IAAI,MAAgC,CAAC;QACrC,IAAI,OAAgB,CAAC;QACrB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,GAAG,CAAC,EAAE,OAAO,EAAE,EAAE,CAAC;YAC7C,IAAI,CAAC;gBACH,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC;gBACxD,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC;gBACpB,OAAO,GAAG,SAAS,CAAC;gBACpB,MAAM;YACR,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,OAAO,GAAG,CAAC,CAAC;gBACZ,IAAI,CAAC,CAAC,CAAC,YAAY,mBAAmB,CAAC;oBAAE,MAAM,CAAC,CAAC;gBACjD,IAAI,OAAO,KAAK,CAAC;oBAAE,MAAM,IAAI,OAAO,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;YAClE,CAAC;QACH,CAAC;QAED,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,MAAM,IAAI,CAAC,CAAC;YACZ,IAAI,CAAC,UAAU,EAAE,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE,EAAE,oBAAqB,OAAiB,EAAE,OAAO,IAAI,SAAS,EAAE,CAAC,CAAC;YACtG,SAAS;QACX,CAAC;QAED,IAAI,CAAC;YACH,MAAM,IAAI,CAAC,KAAK,CAAC,eAAe,CAAC,IAAI,CAAC,QAAQ,EAAE,GAAG,CAAC,EAAE,EAAE,MAAM,CAAC,CAAC;QAClE,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,MAAM,IAAI,CAAC,CAAC;YACZ,IAAI,CAAC,UAAU,EAAE,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE,EAAE,cAAe,CAAW,CAAC,OAAO,EAAE,CAAC,CAAC;YAC5E,SAAS;QACX,CAAC;QAED,SAAS,IAAI,CAAC,CAAC;QACf,IAAI,CAAC,UAAU,EAAE,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC;IAC9C,CAAC;IAED,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,CAAC;AACxD,CAAC"}

package/dist/core/exemplars/recall-code.d.ts

@@ -22,4 +22,4 @@ export interface RecallCodeResult {
  * Recall code exemplars. Returns positives (pass/fix) and negatives (fail/exhausted)
  * as separate lists so the caller can surface them with distinct framing.
  */
-export declare function recallCode(opts: RecallCodeOptions, store: CodeExemplarStore, codeEmbedder: CodeEmbedder | null, proseFallback: LLMClient | null): Promise<RecallCodeResult>;
+export declare function recallCode(tenantId: string, opts: RecallCodeOptions, store: CodeExemplarStore, codeEmbedder: CodeEmbedder | null, proseFallback: LLMClient | null): Promise<RecallCodeResult>;

package/dist/core/exemplars/recall-code.js

@@ -11,7 +11,7 @@ import { laneHealth } from "../health/embedding-lane-state.js";
  * Recall code exemplars. Returns positives (pass/fix) and negatives (fail/exhausted)
  * as separate lists so the caller can surface them with distinct framing.
  */
-export async function recallCode(opts, store, codeEmbedder, proseFallback) {
+export async function recallCode(tenantId, opts, store, codeEmbedder, proseFallback) {
     if (laneHealth("code") === "stale") {
         return { positives: [], negatives: [] };
     }
@@ -45,7 +45,7 @@ export async function recallCode(opts, store, codeEmbedder, proseFallback) {
         includeNegatives: opts.includeNegatives ?? true,
         k: opts.k ?? 5,
     };
-    const hits = await store.searchByVector(queryVector, filter);
+    const hits = await store.searchByVector(tenantId, queryVector, filter);
     const positives = hits.filter((h) => h.outcome === "pass" || h.outcome === "fix");
     const negatives = hits.filter((h) => h.outcome === "fail" || h.outcome === "exhausted");
     return { positives, negatives };

package/dist/core/exemplars/recall-code.js.map

@@ -1 +1 @@
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+{"version":3,"file":"recall-code.js","sourceRoot":"","sources":["../../../src/core/exemplars/recall-code.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,EAAE,UAAU,EAAE,MAAM,sCAAsC,CAAC;AAYlE;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,QAAgB,EAChB,IAAuB,EACvB,KAAwB,EACxB,YAAiC,EACjC,aAA+B;IAE/B,IAAI,UAAU,CAAC,MAAM,CAAC,KAAK,OAAO,EAAE,CAAC;QACnC,OAAO,EAAE,SAAS,EAAE,EAAE,EAAE,SAAS,EAAE,EAAE,EAAE,CAAC;IAC1C,CAAC;IAED,IAAI,WAAW,GAAwB,IAAI,CAAC;IAE5C,IAAI,YAAY,EAAE,CAAC;QACjB,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;YAC7D,WAAW,GAAG,MAAM,CAAC,MAAM,CAAC;QAC9B,CAAC;QAAC,MAAM,CAAC;YACP,2CAA2C;QAC7C,CAAC;IACH,CAAC;IAED,IAAI,CAAC,WAAW,IAAI,aAAa,EAAE,CAAC;QAClC,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;YAC9D,WAAW,GAAG,MAAM,CAAC,MAAM,CAAC;QAC9B,CAAC;QAAC,MAAM,CAAC;YACP,wBAAwB;QAC1B,CAAC;IACH,CAAC;IAED,IAAI,CAAC,WAAW,EAAE,CAAC;QACjB,OAAO,EAAE,SAAS,EAAE,EAAE,EAAE,SAAS,EAAE,EAAE,EAAE,CAAC;IAC1C,CAAC;IAED,MAAM,MAAM,GAA6B;QACvC,YAAY,EAAE,IAAI,CAAC,YAAY;QAC/B,GAAG,CAAC,IAAI,CAAC,IAAI,KAAK,SAAS,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC;QACnD,GAAG,CAAC,IAAI,CAAC,IAAI,KAAK,SAAS,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC;QACnD,GAAG,CAAC,IAAI,CAAC,KAAK,KAAK,SAAS,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,KAAK,EAAE,CAAC;QACtD,gBAAgB,EAAE,IAAI,CAAC,gBAAgB,IAAI,IAAI;QAC/C,CAAC,EAAE,IAAI,CAAC,CAAC,IAAI,CAAC;KACf,CAAC;IAEF,MAAM,IAAI,GAAG,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,EAAE,MAAM,CAAC,CAAC;IAEvE,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,MAAM,IAAI,CAAC,CAAC,OAAO,KAAK,KAAK,CAAC,CAAC;IAClF,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,MAAM,IAAI,CAAC,CAAC,OAAO,KAAK,WAAW,CAAC,CAAC;IAExF,OAAO,EAAE,SAAS,EAAE,SAAS,EAAE,CAAC;AAClC,CAAC"}

package/dist/core/facts/backfill-facts.d.ts

@@ -57,4 +57,4 @@ export interface BackfillFactsReport {
     readonly classifyFailures: number;
     readonly storageFailures: number;
 }
-export declare function backfillFacts(opts: BackfillFactsOptions): Promise<BackfillFactsReport>;
+export declare function backfillFacts(opts: BackfillFactsOptions, tenantId: string): Promise<BackfillFactsReport>;

package/dist/core/facts/backfill-facts.js

@@ -40,7 +40,7 @@ function saveState(path, done) {
         mkdirSync(dir, { recursive: true });
     writeFileSync(path, JSON.stringify({ done: Array.from(done) }, null, 0));
 }
-export async function backfillFacts(opts) {
+export async function backfillFacts(opts, tenantId) {
     const startedAtCutoff = new Date().toISOString();
     const statePath = opts.statePath ?? DEFAULT_STATE_PATH;
     const done = opts.dryRun ? new Set() : loadState(statePath);
@@ -49,7 +49,7 @@ export async function backfillFacts(opts) {
     // transcript text). When reprocess=false, exclude sessions that already
     // have facts attributed to them. SQL lives in each adapter's
     // listBackfillCandidates so backfill is backend-agnostic.
-    const rows = await opts.store.listBackfillCandidates({
+    const rows = await opts.store.listBackfillCandidates(tenantId, {
         cutoff: startedAtCutoff,
         ...(opts.from ? { from: opts.from } : {}),
         reprocess: opts.reprocess ?? false,
@@ -124,10 +124,10 @@ export async function backfillFacts(opts) {
             // so the factStore cast is sound — TS just can't correlate the two union
             // members at one call site.
             if (opts.store instanceof PgSessionStore) {
-                await opts.store.insertFactsForSession(sid, opts.factStore, facts, opts.embedder ?? null);
+                await opts.store.insertFactsForSession(tenantId, sid, opts.factStore, facts, opts.embedder ?? null);
             }
             else {
-                await opts.store.insertFactsForSession(sid, opts.factStore, facts, opts.embedder ?? null);
+                await opts.store.insertFactsForSession(tenantId, sid, opts.factStore, facts, opts.embedder ?? null);
             }
         }
         catch (err) {

package/dist/core/facts/backfill-facts.js.map

@@ -1 +1 @@
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package/dist/core/facts/embed-backfill.d.ts

@@ -0,0 +1,54 @@
+/**
+ * fact embed-backfill — (re)embed active facts that are missing a vector.
+ *
+ * The ingest path embeds facts best-effort: `SqliteSessionStore.embedFacts`
+ * traps per-fact embed errors so one bad call can't abort a batch, which
+ * leaves the fact row current but absent from `fact_embeddings`. Such a fact
+ * is still keyword-recallable via FTS5 and permanently invisible to semantic
+ * recall — and nothing repairs it, because the only existing fact re-embed
+ * runs inside `reembedCorpus` and is gated behind an embedder config change
+ * (a same-config rerun reembeds sessions only). This is that missing repair.
+ *
+ * Mirrors the exemplar embed-backfill (backfillExemplarEmbeddings): same
+ * discovery-by-absence, the store's existing tenant-checked upsertEmbedding,
+ * and a single retry on transient embedder failures. The retry matters here
+ * specifically — the measured production failure is sporadic (~1 in 26 calls,
+ * a steady 3-10% on every busy day since April), not a sustained outage, so
+ * most rows succeed on a second attempt.
+ *
+ * Embed text is `${subject} ${predicate} ${value}`.trim() with role
+ * "document", byte-identical to embedFacts. A different shape here would
+ * produce vectors that don't sit in the same space as live-path ones.
+ *
+ * Only recall-eligible facts are embedded (superseded_by IS NULL AND
+ * retired_at IS NULL). Embedding a dead fact would reintroduce exactly the
+ * ghost vectors scripts/repair-fact-embeddings.mjs deletes (#351), where they
+ * consume ANN k-nearest slots and reduce effective recall.
+ *
+ * Idempotent: discovery is by absence from the vec table, so a second run
+ * finds nothing.
+ *
+ * Layering: depends on the FactStore port for the upsert and on a read-only
+ * better-sqlite3 handle for discovery — the port has no "list rows missing a
+ * vector" method, and adding one for a one-shot operational tool isn't worth
+ * it. Same direct-SQLite call the session and exemplar backfills make.
+ */
+import type { FactStore } from "../../ports/fact-store.js";
+import type { LLMClient } from "../../ports/llm-client.js";
+export interface FactBackfillOptions {
+    readonly tenantId: string;
+    readonly dbPath: string;
+    readonly embedder: LLMClient;
+    readonly store: FactStore;
+    readonly limit?: number;
+    readonly onProgress?: (i: number, total: number, id: string, status: string) => void;
+}
+export interface FactBackfillReport {
+    readonly total: number;
+    readonly succeeded: number;
+    readonly failed: number;
+    readonly dbMissing: boolean;
+}
+/** Byte-identical to SqliteSessionStore.embedFacts — keep the two in sync. */
+export declare function composeFactEmbedText(subject: string, predicate: string, value: string): string;
+export declare function backfillFactEmbeddings(opts: FactBackfillOptions): Promise<FactBackfillReport>;

package/dist/core/facts/embed-backfill.js

@@ -0,0 +1,109 @@
+/**
+ * fact embed-backfill — (re)embed active facts that are missing a vector.
+ *
+ * The ingest path embeds facts best-effort: `SqliteSessionStore.embedFacts`
+ * traps per-fact embed errors so one bad call can't abort a batch, which
+ * leaves the fact row current but absent from `fact_embeddings`. Such a fact
+ * is still keyword-recallable via FTS5 and permanently invisible to semantic
+ * recall — and nothing repairs it, because the only existing fact re-embed
+ * runs inside `reembedCorpus` and is gated behind an embedder config change
+ * (a same-config rerun reembeds sessions only). This is that missing repair.
+ *
+ * Mirrors the exemplar embed-backfill (backfillExemplarEmbeddings): same
+ * discovery-by-absence, the store's existing tenant-checked upsertEmbedding,
+ * and a single retry on transient embedder failures. The retry matters here
+ * specifically — the measured production failure is sporadic (~1 in 26 calls,
+ * a steady 3-10% on every busy day since April), not a sustained outage, so
+ * most rows succeed on a second attempt.
+ *
+ * Embed text is `${subject} ${predicate} ${value}`.trim() with role
+ * "document", byte-identical to embedFacts. A different shape here would
+ * produce vectors that don't sit in the same space as live-path ones.
+ *
+ * Only recall-eligible facts are embedded (superseded_by IS NULL AND
+ * retired_at IS NULL). Embedding a dead fact would reintroduce exactly the
+ * ghost vectors scripts/repair-fact-embeddings.mjs deletes (#351), where they
+ * consume ANN k-nearest slots and reduce effective recall.
+ *
+ * Idempotent: discovery is by absence from the vec table, so a second run
+ * finds nothing.
+ *
+ * Layering: depends on the FactStore port for the upsert and on a read-only
+ * better-sqlite3 handle for discovery — the port has no "list rows missing a
+ * vector" method, and adding one for a one-shot operational tool isn't worth
+ * it. Same direct-SQLite call the session and exemplar backfills make.
+ */
+import { existsSync } from "node:fs";
+import Database from "better-sqlite3";
+import * as sqliteVec from "sqlite-vec";
+import { LLMUnreachableError } from "../../ports/llm-client.js";
+/** Byte-identical to SqliteSessionStore.embedFacts — keep the two in sync. */
+export function composeFactEmbedText(subject, predicate, value) {
+    return `${subject} ${predicate} ${value}`.trim();
+}
+export async function backfillFactEmbeddings(opts) {
+    if (!existsSync(opts.dbPath)) {
+        return { total: 0, succeeded: 0, failed: 0, dbMissing: true };
+    }
+    const db = new Database(opts.dbPath, { readonly: true });
+    sqliteVec.load(db);
+    let rows;
+    try {
+        const sql = "SELECT f.id, f.subject, f.predicate, f.value FROM facts f " +
+            "WHERE f.superseded_by IS NULL AND f.retired_at IS NULL " +
+            "AND f.id NOT IN (SELECT fact_id FROM fact_embeddings) " +
+            "ORDER BY f.created_at" +
+            (opts.limit ? ` LIMIT ${Math.trunc(opts.limit)}` : "");
+        rows = db.prepare(sql).all();
+    }
+    finally {
+        db.close();
+    }
+    const total = rows.length;
+    let succeeded = 0;
+    let failed = 0;
+    for (let i = 0; i < rows.length; i++) {
+        const row = rows[i];
+        const idx = i + 1;
+        const text = composeFactEmbedText(row.subject, row.predicate, row.value);
+        if (!text) {
+            failed += 1;
+            opts.onProgress?.(idx, total, row.id, "FAIL (empty embed text)");
+            continue;
+        }
+        let vector;
+        let lastErr;
+        for (let attempt = 0; attempt < 2; attempt++) {
+            try {
+                const out = await opts.embedder.embed(text, "document");
+                vector = out.vector;
+                lastErr = undefined;
+                break;
+            }
+            catch (e) {
+                lastErr = e;
+                if (!(e instanceof LLMUnreachableError))
+                    throw e;
+                if (attempt === 0)
+                    await new Promise((r) => setTimeout(r, 200));
+            }
+        }
+        if (vector === undefined) {
+            failed += 1;
+            opts.onProgress?.(idx, total, row.id, `FAIL (embedder): ${lastErr?.message ?? "unknown"}`);
+            continue;
+        }
+        try {
+            await opts.store.upsertEmbedding(opts.tenantId, row.id, vector);
+        }
+        catch (e) {
+            failed += 1;
+            opts.onProgress?.(idx, total, row.id, `FAIL (db): ${e.message}`);
+            continue;
+        }
+        succeeded += 1;
+        opts.onProgress?.(idx, total, row.id, "OK");
+    }
+    return { total, succeeded, failed, dbMissing: false };
+}
+//# sourceMappingURL=embed-backfill.js.map

package/dist/core/facts/embed-backfill.js.map

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package/dist/core/facts/reconcile-facts.d.ts

@@ -0,0 +1,42 @@
+/**
+ * Reconcile live facts against operator-supplied authorities. Structured
+ * sources win: a live fact that contradicts an authority, or that names a
+ * deleted file, is retired (never replaced). Deterministic, no LLM calls.
+ */
+import type Database from "better-sqlite3";
+export interface Authority {
+    readonly aliases: readonly string[];
+    readonly predicate: string;
+    readonly value: string;
+    readonly source: string;
+}
+export interface DeletedFile {
+    readonly name: string;
+    readonly deleted_at?: string;
+    readonly source?: string;
+}
+export interface AuthoritiesFile {
+    readonly authorities: readonly Authority[];
+    readonly deleted_files: readonly DeletedFile[];
+}
+export type FindingType = "value_mismatch" | "dead_reference";
+export interface Finding {
+    readonly type: FindingType;
+    readonly factId: string;
+    readonly subject: string;
+    readonly predicate: string;
+    readonly value: string;
+    readonly createdAt: string;
+    readonly tenantId: string;
+    readonly authorityValue: string | null;
+    readonly authoritySource: string;
+}
+export declare function loadAuthorities(path: string): AuthoritiesFile;
+export declare function normalizeSubject(s: string): string;
+export declare function findContradictions(db: Database.Database, file: AuthoritiesFile): Finding[];
+export interface ApplyResult {
+    readonly retired: readonly Finding[];
+    readonly backupPath: string | null;
+}
+export declare function applyRetirements(db: Database.Database, dbFilePath: string, findings: readonly Finding[], limit: number, logPath?: string): Promise<ApplyResult>;
+export declare function formatReport(findings: readonly Finding[], limit: number): string;

package/dist/core/facts/reconcile-facts.js

@@ -0,0 +1,133 @@
+/**
+ * Reconcile live facts against operator-supplied authorities. Structured
+ * sources win: a live fact that contradicts an authority, or that names a
+ * deleted file, is retired (never replaced). Deterministic, no LLM calls.
+ */
+import { readFileSync } from "node:fs";
+import { appendFactSupersedence } from "../storage/supersedence-log.js";
+import { DEFAULT_TEAM_ID } from "../tenancy/default-team.js";
+export function loadAuthorities(path) {
+    const raw = JSON.parse(readFileSync(path, "utf8"));
+    const authorities = raw.authorities ?? [];
+    const deleted = raw.deleted_files ?? [];
+    for (const a of authorities) {
+        if (!Array.isArray(a.aliases) || a.aliases.length === 0 || !a.predicate || a.value === undefined) {
+            throw new Error("each authority needs non-empty aliases, a predicate and a value");
+        }
+    }
+    for (const d of deleted) {
+        if (!d.name)
+            throw new Error("each deleted_files entry needs a name");
+    }
+    return { authorities, deleted_files: deleted };
+}
+export function normalizeSubject(s) {
+    return s.toLowerCase().replace(/[\s_-]+/g, " ").trim();
+}
+function ports(value) {
+    return (value.match(/\d+/g) ?? []).map(Number);
+}
+/**
+ * `host:port` via the WHATWG URL parser only. One parser, so a value can't
+ * read one way to this check and another way to whatever consumes it.
+ */
+function hostPort(value) {
+    try {
+        const u = new URL(value.includes("://") ? value : `http://${value}`);
+        if (u.username || u.password)
+            return null;
+        return u.hostname && u.port ? `${u.hostname}:${u.port}`.toLowerCase() : null;
+    }
+    catch {
+        return null;
+    }
+}
+function contradicts(predicate, factValue, authorityValue) {
+    if (predicate === "port") {
+        const want = Number.parseInt(authorityValue, 10);
+        const have = ports(factValue);
+        return have.length > 0 && !have.includes(want);
+    }
+    if (predicate === "host" || predicate === "url" || predicate === "endpoint") {
+        // Prose values ("the Pro on :7803") aren't comparable; never retire on a guess.
+        const a = hostPort(authorityValue);
+        const f = hostPort(factValue.trim());
+        return a !== null && f !== null && a !== f;
+    }
+    return factValue.trim().toLowerCase() !== authorityValue.trim().toLowerCase();
+}
+export function findContradictions(db, file) {
+    const rows = db
+        .prepare(`SELECT id, subject, predicate, value, created_at, tenant_id FROM facts
+       WHERE superseded_by IS NULL AND retired_at IS NULL AND kind != 'decision'
+       ORDER BY created_at, id`)
+        .all();
+    const aliasMap = new Map();
+    for (const a of file.authorities) {
+        for (const alias of a.aliases) {
+            const key = normalizeSubject(alias);
+            aliasMap.set(key, [...(aliasMap.get(key) ?? []), a]);
+        }
+    }
+    const dead = file.deleted_files.map((d) => ({ d, key: normalizeSubject(d.name) }));
+    const findings = [];
+    for (const row of rows) {
+        const subject = normalizeSubject(row.subject);
+        const base = {
+            factId: row.id,
+            subject: row.subject,
+            predicate: row.predicate,
+            value: row.value,
+            createdAt: row.created_at,
+            tenantId: row.tenant_id ?? DEFAULT_TEAM_ID,
+        };
+        const predicate = row.predicate.trim().toLowerCase();
+        const bad = (aliasMap.get(subject) ?? []).find((a) => a.predicate.trim().toLowerCase() === predicate && contradicts(predicate, row.value, a.value));
+        if (bad) {
+            findings.push({ ...base, type: "value_mismatch", authorityValue: bad.value, authoritySource: bad.source });
+            continue;
+        }
+        const gone = dead.find(({ key }) => subject === key || subject.startsWith(key));
+        if (gone) {
+            findings.push({
+                ...base,
+                type: "dead_reference",
+                authorityValue: null,
+                authoritySource: gone.d.source ?? `deleted file ${gone.d.name}`,
+            });
+        }
+    }
+    return findings;
+}
+export async function applyRetirements(db, dbFilePath, findings, limit, logPath) {
+    const batch = findings.slice(0, limit);
+    if (batch.length === 0)
+        return { retired: [], backupPath: null };
+    const stamp = new Date().toISOString().replace(/[:.]/g, "-");
+    const backupPath = `${dbFilePath}.bak-reconcile-${stamp}`;
+    await db.backup(backupPath);
+    const retire = db.prepare("UPDATE facts SET retired_at = datetime('now') WHERE id = ? AND retired_at IS NULL AND superseded_by IS NULL");
+    db.transaction(() => {
+        for (const f of batch)
+            retire.run(f.factId);
+    })();
+    for (const f of batch) {
+        await appendFactSupersedence(f.tenantId, { factId: f.factId, reason: `${f.type}: contradicted by ${f.authoritySource}`, source: "reconcile" }, logPath);
+    }
+    return { retired: batch, backupPath };
+}
+export function formatReport(findings, limit) {
+    const lines = [];
+    for (const type of ["value_mismatch", "dead_reference"]) {
+        const group = findings.filter((f) => f.type === type);
+        lines.push(`${type} (${group.length})`);
+        for (const f of group) {
+            const auth = f.authorityValue === null ? "" : `authority=${f.authorityValue} `;
+            lines.push(`  ${f.factId}  subject=${f.subject}  predicate=${f.predicate}  value=${f.value}  ` +
+                `${auth}source=${f.authoritySource}  created=${f.createdAt}`);
+        }
+    }
+    lines.push(`total: ${findings.length} (--apply would retire ${Math.min(findings.length, limit)})`);
+    return lines.join("\n");
+}
+//# sourceMappingURL=reconcile-facts.js.map

package/dist/core/facts/reconcile-facts.js.map

@@ -0,0 +1 @@
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package/dist/core/health/embed-failure-state.d.ts

@@ -0,0 +1,4 @@
+export type EmbedFailureKind = "chunk" | "fact";
+export declare function recordEmbedFailure(kind: EmbedFailureKind): void;
+export declare function embedFailureSnapshot(): Readonly<Record<EmbedFailureKind, number>>;
+export declare function resetEmbedFailureForTests(): void;

package/dist/core/health/embed-failure-state.js

@@ -0,0 +1,12 @@
+const state = { chunk: 0, fact: 0 };
+export function recordEmbedFailure(kind) {
+    state[kind] += 1;
+}
+export function embedFailureSnapshot() {
+    return Object.freeze({ ...state });
+}
+export function resetEmbedFailureForTests() {
+    state.chunk = 0;
+    state.fact = 0;
+}
+//# sourceMappingURL=embed-failure-state.js.map

package/dist/core/health/embed-failure-state.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"embed-failure-state.js","sourceRoot":"","sources":["../../../src/core/health/embed-failure-state.ts"],"names":[],"mappings":"AAEA,MAAM,KAAK,GAAqC,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC;AAEtE,MAAM,UAAU,kBAAkB,CAAC,IAAsB;IACvD,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AACnB,CAAC;AAED,MAAM,UAAU,oBAAoB;IAClC,OAAO,MAAM,CAAC,MAAM,CAAC,EAAE,GAAG,KAAK,EAAE,CAAC,CAAC;AACrC,CAAC;AAED,MAAM,UAAU,yBAAyB;IACvC,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC;IAChB,KAAK,CAAC,IAAI,GAAG,CAAC,CAAC;AACjB,CAAC"}

package/dist/core/health/warmup-retry.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Retry loop for a warmup probe that must survive a backend being absent.
+ *
+ * The embedder warmup used to be a single fire-and-forget attempt with an empty
+ * catch. If the backend was not servable at that instant the stage latched cold
+ * for the daemon's entire uptime, even after the backend returned, and only a
+ * restart cleared it. Two costs, both real: a five-day silent outage while the
+ * embedder was reachable throughout, and a three-week hunt for a release
+ * "regression" that did not exist, because restarting inside the same outage
+ * window reproduces the failure every time and reads as determinism.
+ *
+ * Pure except for the injected `sleep`, so the backoff schedule is testable
+ * without timers. Never throws: a warmup probe must not be able to take down
+ * the process it is reporting on.
+ */
+export interface RetryUntilWarmDeps {
+    /** The probe. Resolving means the lane is live. */
+    readonly attempt: () => Promise<unknown>;
+    readonly onSuccess: () => void;
+    /** Called per failed attempt so health can name the cause instead of showing a bare false. */
+    readonly onFailure: (reason: string, attempt: number) => void;
+    readonly sleep: (ms: number) => Promise<void>;
+    readonly maxAttempts?: number;
+    readonly baseDelayMs?: number;
+    readonly maxDelayMs?: number;
+}
+export declare function retryUntilWarm(deps: RetryUntilWarmDeps): Promise<void>;

package/dist/core/health/warmup-retry.js

@@ -0,0 +1,53 @@
+/**
+ * Retry loop for a warmup probe that must survive a backend being absent.
+ *
+ * The embedder warmup used to be a single fire-and-forget attempt with an empty
+ * catch. If the backend was not servable at that instant the stage latched cold
+ * for the daemon's entire uptime, even after the backend returned, and only a
+ * restart cleared it. Two costs, both real: a five-day silent outage while the
+ * embedder was reachable throughout, and a three-week hunt for a release
+ * "regression" that did not exist, because restarting inside the same outage
+ * window reproduces the failure every time and reads as determinism.
+ *
+ * Pure except for the injected `sleep`, so the backoff schedule is testable
+ * without timers. Never throws: a warmup probe must not be able to take down
+ * the process it is reporting on.
+ */
+const DEFAULT_MAX_ATTEMPTS = 60;
+const DEFAULT_BASE_DELAY_MS = 1_000;
+// Caps the tail at a minute: long enough that a backend absent for hours costs
+// ~60 cheap probes, short enough that recovery is noticed within a minute.
+const DEFAULT_MAX_DELAY_MS = 60_000;
+function reasonOf(err) {
+    return err instanceof Error ? err.message : String(err);
+}
+export async function retryUntilWarm(deps) {
+    const maxAttempts = deps.maxAttempts ?? DEFAULT_MAX_ATTEMPTS;
+    const baseDelay = deps.baseDelayMs ?? DEFAULT_BASE_DELAY_MS;
+    const maxDelay = deps.maxDelayMs ?? DEFAULT_MAX_DELAY_MS;
+    for (let attempt = 1; attempt <= maxAttempts; attempt++) {
+        try {
+            await deps.attempt();
+            deps.onSuccess();
+            return;
+        }
+        catch (err) {
+            try {
+                deps.onFailure(reasonOf(err), attempt);
+            }
+            catch {
+                // A broken reporter must not end the retry loop.
+            }
+            if (attempt === maxAttempts)
+                return;
+            const delay = Math.min(baseDelay * 2 ** (attempt - 1), maxDelay);
+            try {
+                await deps.sleep(delay);
+            }
+            catch {
+                return;
+            }
+        }
+    }
+}
+//# sourceMappingURL=warmup-retry.js.map

package/dist/core/health/warmup-retry.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"warmup-retry.js","sourceRoot":"","sources":["../../../src/core/health/warmup-retry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAcH,MAAM,oBAAoB,GAAG,EAAE,CAAC;AAChC,MAAM,qBAAqB,GAAG,KAAK,CAAC;AACpC,+EAA+E;AAC/E,2EAA2E;AAC3E,MAAM,oBAAoB,GAAG,MAAM,CAAC;AAEpC,SAAS,QAAQ,CAAC,GAAY;IAC5B,OAAO,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;AAC1D,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,IAAwB;IAC3D,MAAM,WAAW,GAAG,IAAI,CAAC,WAAW,IAAI,oBAAoB,CAAC;IAC7D,MAAM,SAAS,GAAG,IAAI,CAAC,WAAW,IAAI,qBAAqB,CAAC;IAC5D,MAAM,QAAQ,GAAG,IAAI,CAAC,UAAU,IAAI,oBAAoB,CAAC;IAEzD,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,IAAI,WAAW,EAAE,OAAO,EAAE,EAAE,CAAC;QACxD,IAAI,CAAC;YACH,MAAM,IAAI,CAAC,OAAO,EAAE,CAAC;YACrB,IAAI,CAAC,SAAS,EAAE,CAAC;YACjB,OAAO;QACT,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,IAAI,CAAC;gBACH,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC;YACzC,CAAC;YAAC,MAAM,CAAC;gBACP,iDAAiD;YACnD,CAAC;YACD,IAAI,OAAO,KAAK,WAAW;gBAAE,OAAO;YACpC,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,GAAG,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;YACjE,IAAI,CAAC;gBACH,MAAM,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;YAC1B,CAAC;YAAC,MAAM,CAAC;gBACP,OAAO;YACT,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/core/health/warmup-state.d.ts

@@ -2,11 +2,26 @@ interface WarmupState {
     fts5: boolean;
     textEmbedder: boolean;
 }
+/**
+ * Why a stage is still cold. A bare `false` is indistinguishable between "the
+ * backend was absent at boot" and "this build is broken", and that ambiguity
+ * cost three weeks chasing a release regression that did not exist. `since`
+ * holds the FIRST failure so health can report how long the lane has been down
+ * rather than only the latest retry.
+ */
+export interface WarmupFailure {
+    readonly reason: string;
+    readonly attempts: number;
+    readonly since: string;
+}
+type FailureMap = Partial<Record<keyof WarmupState, WarmupFailure>>;
 export declare function markWarm(stage: keyof WarmupState): void;
+export declare function markWarmFailure(stage: keyof WarmupState, reason: string, attempts: number): void;
 export declare function warmupSnapshot(): {
     fts5: boolean;
     textEmbedder: boolean;
     ready: boolean;
+    lastError?: FailureMap;
 };
 export declare function resetWarmupState(): void;
 export {};