nlm-memory 0.20.1 → 0.21.12

package/dist/core/storage/sqlite-fact-store.js

@@ -14,8 +14,18 @@
  *   B.3 — listForRecall (pre-filter for FactRecallService), semanticSearch,
  *         getHistory (supersedence chain inspection)
  *   B.4 — auto-supersedence on (subject, predicate) collision (deferred)
+ *
+ * Tenancy (program spec §4, M2 plan Wave B): every method takes `tenantId`
+ * as its non-optional first parameter. `facts` is a STAMP table; every
+ * SELECT/UPDATE/DELETE routes its WHERE fragment through `tenantClause`,
+ * and INSERTs stamp `tenant_id` explicitly. `fact_embeddings` carries no
+ * tenant_id (DERIVE-VIA-FK, keyed by fact_id) — `semanticSearch`'s KNN scan
+ * has no tenant awareness of its own, so callers (FactRecallService) resolve
+ * neighbor ids back through the tenant-filtered `getByIds`/`getById` before
+ * trusting them (program spec §4.3, vector-path rule).
  */
 import { batchWinners } from "./fact-batch.js";
+import { tenantClause } from "../tenancy/tenant-clause.js";
 export class SqliteFactStore {
     db;
     /**
@@ -27,10 +37,10 @@ export class SqliteFactStore {
         this.db = db;
     }
     cachedInsertStmt;
-    async insert(fact) {
-        this.insertStmt().run(this.toRow(fact));
+    async insert(tenantId, fact) {
+        this.insertStmt().run(this.toRow(fact, null, tenantId));
     }
-    async insertMany(facts) {
+    async insertMany(tenantId, facts) {
         if (facts.length === 0)
             return;
         const stmt = this.insertStmt();
@@ -38,43 +48,47 @@ export class SqliteFactStore {
             for (const row of rows)
                 stmt.run(row);
         });
-        txn(facts.map((f) => this.toRow(f)));
+        txn(facts.map((f) => this.toRow(f, null, tenantId)));
     }
-    async getById(id) {
+    async getById(tenantId, id) {
+        const tc = tenantClause(tenantId);
         const row = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
                 source_quote, created_at, superseded_by, confidence, retired_at
-         FROM facts WHERE id = ?`)
-            .get(id);
+         FROM facts WHERE id = ? AND ${tc.sql}`)
+            .get(id, tc.param);
         return row ? this.rowToFact(row) : null;
     }
-    async getByIds(ids) {
+    async getByIds(tenantId, ids) {
         if (ids.length === 0)
             return [];
         const placeholders = ids.map(() => "?").join(",");
+        const tc = tenantClause(tenantId);
         const rows = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
                 source_quote, created_at, superseded_by, confidence, retired_at
-         FROM facts WHERE id IN (${placeholders})`)
-            .all(...ids);
+         FROM facts WHERE id IN (${placeholders}) AND ${tc.sql}`)
+            .all(...ids, tc.param);
         return rows.map((r) => this.rowToFact(r));
     }
-    async findCurrent(subject, predicate) {
+    async findCurrent(tenantId, subject, predicate) {
+        const tc = tenantClause(tenantId);
         const row = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
                 source_quote, created_at, superseded_by, confidence, retired_at
          FROM facts
-         WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND retired_at IS NULL
+         WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND retired_at IS NULL AND ${tc.sql}
          ORDER BY created_at DESC
          LIMIT 1`)
-            .get(subject, predicate);
+            .get(subject, predicate, tc.param);
         return row ? this.rowToFact(row) : null;
     }
-    async list(query) {
+    async list(tenantId, query) {
         const limit = Math.max(1, Math.trunc(query.limit ?? 50));
         const includeSuperseded = query.includeSuperseded === true;
-        const where = ["subject = ?"];
-        const params = [query.subject];
+        const tc = tenantClause(tenantId);
+        const where = ["subject = ?", tc.sql];
+        const params = [query.subject, tc.param];
         if (query.predicate !== undefined) {
             where.push("predicate = ?");
             params.push(query.predicate);
@@ -94,31 +108,34 @@ export class SqliteFactStore {
             .all(...params);
         return rows.map((r) => this.rowToFact(r));
     }
-    async listBySession(sessionId) {
+    async listBySession(tenantId, sessionId) {
+        const tc = tenantClause(tenantId);
         const rows = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
                 source_quote, created_at, superseded_by, confidence, retired_at
          FROM facts
-         WHERE source_session_id = ?
+         WHERE source_session_id = ? AND ${tc.sql}
          ORDER BY created_at ASC`)
-            .all(sessionId);
+            .all(sessionId, tc.param);
         return rows.map((r) => this.rowToFact(r));
     }
-    async listBySessions(sessionIds, opts) {
+    async listBySessions(tenantId, sessionIds, opts) {
         if (sessionIds.length === 0)
             return [];
         const ph = sessionIds.map(() => "?").join(",");
         const filter = opts?.includeSuperseded === true ? "" : " AND superseded_by IS NULL AND retired_at IS NULL";
+        const tc = tenantClause(tenantId);
         const rows = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
                 source_quote, created_at, superseded_by, confidence, retired_at
-         FROM facts WHERE source_session_id IN (${ph})${filter} ORDER BY created_at ASC`)
-            .all(...sessionIds);
+         FROM facts WHERE source_session_id IN (${ph}) AND ${tc.sql}${filter} ORDER BY created_at ASC`)
+            .all(...sessionIds, tc.param);
         return rows.map((r) => this.rowToFact(r));
     }
-    async listForRecall(filter) {
-        const where = [];
-        const params = [];
+    async listForRecall(tenantId, filter) {
+        const tc = tenantClause(tenantId);
+        const where = [tc.sql];
+        const params = [tc.param];
         if (filter.subject !== undefined) {
             where.push("subject = ?");
             params.push(filter.subject);
@@ -145,7 +162,7 @@ export class SqliteFactStore {
       SELECT id, kind, subject, predicate, value, source_session_id,
              source_quote, created_at, superseded_by, confidence, retired_at
       FROM facts
-      ${where.length > 0 ? "WHERE " + where.join(" AND ") : ""}
+      WHERE ${where.join(" AND ")}
       ORDER BY created_at DESC
       LIMIT ?
     `;
@@ -154,9 +171,15 @@ export class SqliteFactStore {
             .all(...params);
         return rows.map((r) => this.rowToFact(r));
     }
-    async semanticSearch(queryVector, limit) {
+    async semanticSearch(tenantId, queryVector, limit) {
         const k = Math.max(1, Math.trunc(limit));
         const blob = Buffer.from(queryVector.buffer, queryVector.byteOffset, queryVector.byteLength);
+        // fact_embeddings carries no tenant_id (DERIVE-VIA-FK) — the KNN scan
+        // returns neighbors from the whole corpus. Re-resolve candidate ids
+        // against the tenant-filtered `facts` table before returning, per the
+        // vector-path rule (program spec §4.3): a neighbor whose fact doesn't
+        // resolve within the caller's tenant is dropped, not down-ranked.
+        const overfetchK = k * 4;
         const rows = this.db
             .prepare(`
         SELECT fact_id, distance
@@ -165,24 +188,37 @@ export class SqliteFactStore {
           AND k = ?
         ORDER BY distance
       `)
-            .all(blob, k);
-        return rows.map((r) => ({ factId: r.fact_id, distance: r.distance }));
+            .all(blob, overfetchK);
+        if (rows.length === 0)
+            return [];
+        const candidateIds = [...new Set(rows.map((r) => r.fact_id))];
+        const placeholders = candidateIds.map(() => "?").join(",");
+        const tc = tenantClause(tenantId);
+        const resolvedRows = this.db
+            .prepare(`SELECT id FROM facts WHERE id IN (${placeholders}) AND ${tc.sql}`)
+            .all(...candidateIds, tc.param);
+        const resolved = new Set(resolvedRows.map((r) => r.id));
+        return rows
+            .filter((r) => resolved.has(r.fact_id))
+            .slice(0, k)
+            .map((r) => ({ factId: r.fact_id, distance: r.distance }));
     }
-    async getHistory(subject, predicate) {
+    async getHistory(tenantId, subject, predicate) {
+        const tc = tenantClause(tenantId);
         const sql = predicate
             ? `SELECT id, kind, subject, predicate, value, source_session_id,
                 source_quote, created_at, superseded_by, confidence
          FROM facts
-         WHERE subject = ? AND predicate = ?
+         WHERE subject = ? AND predicate = ? AND ${tc.sql}
          ORDER BY predicate ASC, created_at DESC`
             : `SELECT id, kind, subject, predicate, value, source_session_id,
                 source_quote, created_at, superseded_by, confidence
          FROM facts
-         WHERE subject = ?
+         WHERE subject = ? AND ${tc.sql}
          ORDER BY predicate ASC, created_at DESC`;
         const rows = predicate
-            ? this.db.prepare(sql).all(subject, predicate)
-            : this.db.prepare(sql).all(subject);
+            ? this.db.prepare(sql).all(subject, predicate, tc.param)
+            : this.db.prepare(sql).all(subject, tc.param);
         const byPred = new Map();
         for (const r of rows) {
             const fact = this.rowToFact(r);
@@ -198,7 +234,7 @@ export class SqliteFactStore {
         }
         return chains;
     }
-    async corroborationCounts(triples) {
+    async corroborationCounts(tenantId, triples) {
         const out = new Map();
         if (triples.length === 0)
             return out;
@@ -211,6 +247,7 @@ export class SqliteFactStore {
         for (const t of triples) {
             args.push(t.subject, t.predicate, t.value);
         }
+        const corrTc = tenantClause(tenantId, "f.tenant_id");
         const sql = `
       WITH q(subject, predicate, value) AS (VALUES ${placeholders})
       SELECT q.subject, q.predicate, q.value,
@@ -220,46 +257,110 @@ export class SqliteFactStore {
         ON f.subject = q.subject
        AND f.predicate = q.predicate
        AND f.value = q.value
+       AND ${corrTc.sql}
       GROUP BY q.subject, q.predicate, q.value
     `;
-        const rows = this.db.prepare(sql).all(...args);
+        const rows = this.db.prepare(sql).all(...args, corrTc.param);
         for (const r of rows) {
             out.set(`${r.subject} ${r.predicate} ${r.value}`, r.session_count);
         }
         return out;
     }
+    /**
+     * Aggregate current (non-superseded, non-retired) facts by subject.
+     * Covered by idx_facts_subject_current.
+     */
+    async listSubjectStats(tenantId) {
+        const tc = tenantClause(tenantId);
+        const rows = this.db
+            .prepare(`SELECT subject,
+                COUNT(*) AS fact_count,
+                COUNT(DISTINCT source_session_id) AS session_count
+         FROM facts
+         WHERE superseded_by IS NULL AND retired_at IS NULL AND ${tc.sql}
+         GROUP BY subject
+         ORDER BY fact_count DESC, subject ASC`)
+            .all(tc.param);
+        return rows.map((r) => ({
+            subject: r.subject,
+            factCount: r.fact_count,
+            sessionCount: r.session_count,
+        }));
+    }
+    /**
+     * Every non-retired fact for the given subjects, current and superseded,
+     * in one query — the wiki projection's rollup stage calls this once for
+     * all selected subjects instead of fanning out one listForRecall call per
+     * subject. Chunked at 500 subjects per query because SQLite's default
+     * host-parameter limit is 999 and the tenant param takes one slot. No SQL
+     * ORDER BY: chunk boundaries don't align with the requested subject/date
+     * order, so the concatenated rows are sorted once in JS afterward instead.
+     */
+    async listBySubjects(tenantId, subjects) {
+        if (subjects.length === 0)
+            return [];
+        const tc = tenantClause(tenantId);
+        const CHUNK_SIZE = 500;
+        const rows = [];
+        for (let i = 0; i < subjects.length; i += CHUNK_SIZE) {
+            const chunk = subjects.slice(i, i + CHUNK_SIZE);
+            const placeholders = chunk.map(() => "?").join(",");
+            const chunkRows = this.db
+                .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
+                  source_quote, created_at, superseded_by, confidence, retired_at
+           FROM facts
+           WHERE subject IN (${placeholders}) AND retired_at IS NULL AND ${tc.sql}`)
+                .all(...chunk, tc.param);
+            rows.push(...chunkRows);
+        }
+        rows.sort((a, b) => a.subject.localeCompare(b.subject) ||
+            a.created_at.localeCompare(b.created_at) ||
+            a.id.localeCompare(b.id));
+        return rows.map((r) => this.rowToFact(r));
+    }
     /**
      * Insert (or replace) the embedding row for a fact. Best-effort: callers
      * trap embedder errors so an unreachable Ollama doesn't roll back ingest.
-     * vec0 doesn't UPDATE, so this is a DELETE+INSERT pair.
+     * vec0 doesn't UPDATE, so this is a DELETE+INSERT pair. Guarded by a
+     * tenant-scoped existence check — writing an embedding for a fact outside
+     * the caller's tenant is a no-op, not a fallthrough write.
      */
-    async upsertEmbedding(factId, vector) {
+    async upsertEmbedding(tenantId, factId, vector) {
+        const tc = tenantClause(tenantId);
+        const owned = this.db
+            .prepare(`SELECT id FROM facts WHERE id = ? AND ${tc.sql}`)
+            .get(factId, tc.param);
+        if (!owned)
+            return;
         const blob = Buffer.from(vector.buffer, vector.byteOffset, vector.byteLength);
         this.db.prepare("DELETE FROM fact_embeddings WHERE fact_id = ?").run(factId);
         this.db
             .prepare("INSERT INTO fact_embeddings (fact_id, embedding) VALUES (?, ?)")
             .run(factId, blob);
     }
-    async markSuperseded(oldId, newId) {
+    async markSuperseded(tenantId, oldId, newId) {
         if (newId !== null && oldId === newId) {
             throw new Error("A fact cannot supersede itself");
         }
         const txn = this.db.transaction(() => {
+            const oldTc = tenantClause(tenantId);
             const old = this.db
-                .prepare("SELECT id FROM facts WHERE id = ?")
-                .get(oldId);
+                .prepare(`SELECT id FROM facts WHERE id = ? AND ${oldTc.sql}`)
+                .get(oldId, oldTc.param);
             if (!old)
                 throw new Error(`Fact ${oldId} not found`);
             if (newId !== null) {
+                const newTc = tenantClause(tenantId);
                 const next = this.db
-                    .prepare("SELECT id FROM facts WHERE id = ?")
-                    .get(newId);
+                    .prepare(`SELECT id FROM facts WHERE id = ? AND ${newTc.sql}`)
+                    .get(newId, newTc.param);
                 if (!next)
                     throw new Error(`Fact ${newId} not found`);
             }
+            const updateTc = tenantClause(tenantId);
             this.db
-                .prepare("UPDATE facts SET superseded_by = ? WHERE id = ?")
-                .run(newId, oldId);
+                .prepare(`UPDATE facts SET superseded_by = ? WHERE id = ? AND ${updateTc.sql}`)
+                .run(newId, oldId, updateTc.param);
             // A superseded fact is recall-ineligible, so its embedding must leave the
             // ANN index (matching retire()'s behavior) — otherwise it consumes
             // k-nearest slots and silently reduces effective recall (NLM #351).
@@ -269,22 +370,24 @@ export class SqliteFactStore {
         });
         txn();
     }
-    async retire(factId) {
+    async retire(tenantId, factId) {
         const txn = this.db.transaction(() => {
+            const rowTc = tenantClause(tenantId);
             const row = this.db
-                .prepare("SELECT id FROM facts WHERE id = ?")
-                .get(factId);
+                .prepare(`SELECT id FROM facts WHERE id = ? AND ${rowTc.sql}`)
+                .get(factId, rowTc.param);
             if (!row)
                 throw new Error(`Fact ${factId} not found`);
+            const updateTc = tenantClause(tenantId);
             this.db
-                .prepare("UPDATE facts SET retired_at = ? WHERE id = ?")
-                .run(new Date().toISOString(), factId);
+                .prepare(`UPDATE facts SET retired_at = ? WHERE id = ? AND ${updateTc.sql}`)
+                .run(new Date().toISOString(), factId, updateTc.param);
             this.db.prepare("DELETE FROM fact_embeddings WHERE fact_id = ?").run(factId);
         });
         txn();
     }
-    async ingestSessionFacts(sessionId, facts) {
-        this.ingestSessionFactsInTxn(sessionId, facts);
+    async ingestSessionFacts(tenantId, sessionId, facts) {
+        this.ingestSessionFactsInTxn(tenantId, sessionId, facts);
     }
     /**
      * Sync core of ingestSessionFacts, callable from inside an existing
@@ -296,13 +399,15 @@ export class SqliteFactStore {
      * originally landed only here and silently skipped the inlined copies — the
      * path production actually uses — leaving both bugs live in production.
      */
-    ingestSessionFactsInTxn(sessionId, facts) {
+    ingestSessionFactsInTxn(tenantId, sessionId, facts, scope = null) {
         // Re-ingesting a session replaces its facts; drop the old facts' embeddings
         // too, or they orphan in the ANN index as ghosts (NLM #351).
+        const staleTc = tenantClause(tenantId);
         const stale = this.db
-            .prepare("SELECT id FROM facts WHERE source_session_id = ?")
-            .all(sessionId);
-        this.db.prepare("DELETE FROM facts WHERE source_session_id = ?").run(sessionId);
+            .prepare(`SELECT id FROM facts WHERE source_session_id = ? AND ${staleTc.sql}`)
+            .all(sessionId, staleTc.param);
+        const deleteStaleTc = tenantClause(tenantId);
+        this.db.prepare(`DELETE FROM facts WHERE source_session_id = ? AND ${deleteStaleTc.sql}`).run(sessionId, deleteStaleTc.param);
         const delStaleEmb = this.db.prepare("DELETE FROM fact_embeddings WHERE fact_id = ?");
         for (const row of stale)
             delStaleEmb.run(row.id);
@@ -310,14 +415,16 @@ export class SqliteFactStore {
             return;
         const insertStmt = this.insertStmt();
         for (const f of facts)
-            insertStmt.run(this.toRow(f));
+            insertStmt.run(this.toRow(f, scope, tenantId));
         // Collapse EVERY other active fact for this (subject, predicate) under the
         // new fact, not just the single most-recent prior. A single-prior loop
         // cannot restore the invariant once two priors are already active and
         // leaves the duplicate live forever. See NLM #301.
-        const findSupersededStmt = this.db.prepare(`SELECT id FROM facts WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND id != ?`);
+        const findTc = tenantClause(tenantId);
+        const findSupersededStmt = this.db.prepare(`SELECT id FROM facts WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND id != ? AND ${findTc.sql}`);
+        const markTc = tenantClause(tenantId);
         const markSupersededStmt = this.db.prepare(`UPDATE facts SET superseded_by = ?
-       WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND id != ?`);
+       WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND id != ? AND ${markTc.sql}`);
         const delEmbeddingStmt = this.db.prepare("DELETE FROM fact_embeddings WHERE fact_id = ?");
         // Collapse ONCE per (subject, predicate), under a single winner. Running the
         // collapse per-fact creates a supersedence CYCLE when a batch carries two
@@ -329,8 +436,8 @@ export class SqliteFactStore {
             // Capture which facts this collapse supersedes BEFORE the update, then
             // drop their embeddings — a superseded fact must not linger in the ANN
             // index (NLM #351). Same reason markSuperseded/retire delete embeddings.
-            const collapsed = findSupersededStmt.all(f.subject, f.predicate, f.id);
-            markSupersededStmt.run(f.id, f.subject, f.predicate, f.id);
+            const collapsed = findSupersededStmt.all(f.subject, f.predicate, f.id, tenantId);
+            markSupersededStmt.run(f.id, f.subject, f.predicate, f.id, tenantId);
             for (const row of collapsed)
                 delEmbeddingStmt.run(row.id);
         }
@@ -340,16 +447,18 @@ export class SqliteFactStore {
             this.cachedInsertStmt = this.db.prepare(`
         INSERT INTO facts (
           id, kind, subject, predicate, value, source_session_id,
-          source_quote, created_at, superseded_by, confidence, retired_at
+          source_quote, created_at, superseded_by, confidence, retired_at,
+          scope, tenant_id
         ) VALUES (
           @id, @kind, @subject, @predicate, @value, @source_session_id,
-          @source_quote, @created_at, @superseded_by, @confidence, @retired_at
+          @source_quote, @created_at, @superseded_by, @confidence, @retired_at,
+          @scope, @tenant_id
         )
       `);
         }
         return this.cachedInsertStmt;
     }
-    toRow(fact) {
+    toRow(fact, scope, tenantId) {
         return {
             id: fact.id,
             kind: fact.kind,
@@ -362,6 +471,8 @@ export class SqliteFactStore {
             superseded_by: fact.supersededBy,
             confidence: fact.confidence,
             retired_at: fact.retiredAt ?? null,
+            scope,
+            tenant_id: tenantId,
         };
     }
     rowToFact(row) {

package/dist/core/storage/sqlite-fact-store.js.map

@@ -1 +1 @@
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package/dist/core/storage/sqlite-learner-store.d.ts

@@ -0,0 +1,33 @@
+/**
+ * SqliteLearnerStore — LearnerStore over the shared better-sqlite3 connection.
+ *
+ * Constructor takes an already-opened, already-migrated Database handle from
+ * SqliteSessionStore.rawDb(). It does not open its own connection (same
+ * single-writer rationale as SqliteFactStore).
+ *
+ * Tenancy: `learners`, `enrollments`, `learning_events` are STAMP tables;
+ * every SELECT/UPDATE WHERE routes through `tenantClause`, INSERTs stamp
+ * `tenant_id` explicitly. Learner ids are human slugs, so `learners` PK is
+ * (tenant_id, id) — same-tenant addressing only, no cross-tenant visibility.
+ */
+import type Database from "better-sqlite3";
+import type { EnrollmentInput, LearnerInit, LearnerStore, LearningEventInput, RecordResult } from "../../ports/learner-store.js";
+import type { Enrollment, Learner, LearningEvent } from "../learner/model.js";
+export declare class SqliteLearnerStore implements LearnerStore {
+    private readonly db;
+    /**
+     * @internal. Construct via SqliteStorage.create(...) instead — see
+     * SqliteFactStore for the rationale.
+     */
+    constructor(db: Database.Database);
+    initLearner(tenantId: string, input: LearnerInit): Promise<void>;
+    getLearner(tenantId: string, id: string): Promise<Learner | null>;
+    enroll(tenantId: string, input: EnrollmentInput): Promise<Enrollment>;
+    getEnrollment(tenantId: string, learnerId: string, courseId: string): Promise<Enrollment | null>;
+    listEnrollments(tenantId: string, learnerId: string): Promise<ReadonlyArray<Enrollment>>;
+    listEnrollmentsByWorkstreams(tenantId: string, workstreamIds: ReadonlyArray<string>): Promise<ReadonlyArray<Enrollment>>;
+    recordEvent(tenantId: string, learnerId: string, courseId: string, event: LearningEventInput): Promise<RecordResult>;
+    listEvents(tenantId: string, learnerId: string, courseId: string): Promise<ReadonlyArray<LearningEvent>>;
+    completeCourse(tenantId: string, learnerId: string, courseId: string): Promise<void>;
+    private getEnrollmentRow;
+}