nlm-memory 0.16.0 → 0.19.0

package/dist/core/ingest/reclassify-oversized.js

@@ -0,0 +1,104 @@
+import { classifyAdaptive } from "../classifier/hierarchical-classify.js";
+import { extractFacts } from "../facts/extract-facts.js";
+const BODY_CAP = 200_000;
+const CONFIDENCE_FLOOR = 0.3;
+export function selectOversizedFailures(db, limit) {
+    const sql = "SELECT adapter_name, source_path FROM adapter_state " +
+        "WHERE session_id IS NULL AND failure_count >= 1 ORDER BY file_size DESC" +
+        (limit !== undefined ? ` LIMIT ${Math.floor(limit)}` : "");
+    return db.prepare(sql).all();
+}
+export async function reclassifyOversized(deps, opts = {}) {
+    const log = deps.log ?? ((m) => console.error(m));
+    const byName = new Map(deps.adapters.map((a) => [a.name, a]));
+    const rows = selectOversizedFailures(deps.db, opts.limit);
+    let ingested = 0;
+    let skippedLowConfidence = 0;
+    let failed = 0;
+    let missingFile = 0;
+    let entities = 0;
+    let decisions = 0;
+    let facts = 0;
+    for (const row of rows) {
+        const adapter = byName.get(row.adapter_name);
+        if (!adapter) {
+            failed++;
+            log(`[reclassify] no adapter for ${row.adapter_name}`);
+            continue;
+        }
+        let chunk;
+        try {
+            chunk = await adapter.parseSession(row.source_path);
+        }
+        catch (e) {
+            missingFile++;
+            log(`[reclassify] parse failed ${row.source_path}: ${e instanceof Error ? e.message : String(e)}`);
+            continue;
+        }
+        if (!chunk) {
+            missingFile++;
+            continue;
+        }
+        let classification;
+        try {
+            classification = await classifyAdaptive(chunk.text, deps.classifier);
+        }
+        catch (e) {
+            failed++;
+            log(`[reclassify] classify failed ${chunk.id}: ${e instanceof Error ? e.message : String(e)}`);
+            continue;
+        }
+        if (opts.dryRun) {
+            // dry-run classifies and counts candidates but performs NO writes —
+            // including not resetting failure_count on low-confidence rows.
+            continue;
+        }
+        if (classification.confidence < CONFIDENCE_FLOOR) {
+            skippedLowConfidence++;
+            deps.db
+                .prepare("UPDATE adapter_state SET failure_count = 0 WHERE adapter_name = ? AND source_path = ?")
+                .run(row.adapter_name, row.source_path);
+            continue;
+        }
+        const record = {
+            id: chunk.id,
+            runtime: chunk.runtime,
+            runtimeSessionId: chunk.runtimeSessionId,
+            startedAt: chunk.startedAt,
+            endedAt: chunk.endedAt,
+            durationMin: chunk.durationMin,
+            label: classification.label,
+            summary: classification.summary,
+            body: chunk.text.slice(0, BODY_CAP),
+            status: "closed",
+            transcriptKind: adapter.transcriptKind,
+            transcriptPath: row.source_path,
+            transcriptOffset: null,
+            transcriptLength: chunk.text.length,
+            entities: classification.entities,
+            decisions: classification.decisions,
+            openQuestions: classification.open,
+        };
+        const extracted = extractFacts(classification, chunk.id, chunk.startedAt);
+        try {
+            await deps.store.insertSession(record, deps.embedder, null, {
+                factStore: deps.factStore,
+                facts: extracted,
+            });
+            deps.db
+                .prepare("UPDATE adapter_state SET session_id = ?, last_offset = file_size, failure_count = 0 " +
+                "WHERE adapter_name = ? AND source_path = ?")
+                .run(chunk.id, row.adapter_name, row.source_path);
+            ingested++;
+            entities += classification.entities.length;
+            decisions += classification.decisions.length;
+            facts += extracted.length;
+        }
+        catch (e) {
+            failed++;
+            log(`[reclassify] ingest failed ${chunk.id}: ${e instanceof Error ? e.message : String(e)}`);
+        }
+    }
+    return { attempted: rows.length, ingested, skippedLowConfidence, failed, missingFile, entities, decisions, facts };
+}
+//# sourceMappingURL=reclassify-oversized.js.map

package/dist/core/ingest/reclassify-oversized.js.map

@@ -0,0 +1 @@
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package/dist/core/storage/pg-code-exemplar-store.d.ts

@@ -11,7 +11,7 @@
  * SQLite store, which deletes from code_exemplars_vec explicitly).
  */
 import type { Pool } from "pg";
-import type { CodeExemplarSearchFilter, CodeExemplarStore } from "../../ports/code-exemplar-store.js";
+import type { CodeExemplarSearchFilter, CodeExemplarStore, ExemplarVerdictPatch, ExemplarVerdictResult, ExemplarVerdictSource } from "../../ports/code-exemplar-store.js";
 import type { CodeExemplar, CodeExemplarHit, CodeExemplarInput } from "../../shared/types.js";
 export declare class PgCodeExemplarStore implements CodeExemplarStore {
     private readonly pool;
@@ -26,6 +26,7 @@ export declare class PgCodeExemplarStore implements CodeExemplarStore {
     getById(id: string): Promise<CodeExemplar | null>;
     applyBucketCap(installScope: string, maxPerBucket: number): Promise<number>;
     pruneReverted(installScope: string): Promise<number>;
+    setVerdict(id: string, patch: ExemplarVerdictPatch, source: ExemplarVerdictSource): Promise<ExemplarVerdictResult>;
     pruneOlderThan(olderThanTs: string): Promise<number>;
     private rowToExemplar;
 }

package/dist/core/storage/pg-code-exemplar-store.js

@@ -13,7 +13,8 @@
 import { exemplarId } from "./sqlite-code-exemplar-store.js";
 const VEC_DIM = 768;
 const COLUMNS = "id, install_scope, signal_id, session_id, repo, model, lang, " +
-    "task_context, code, code_hash, outcome, git_sha, survived, ts, created_at";
+    "task_context, code, code_hash, outcome, git_sha, survived, ts, created_at, " +
+    "retired_at, label_source";
 function insertParams(input) {
     const id = exemplarId({
         installScope: input.installScope,
@@ -98,7 +99,7 @@ export class PgCodeExemplarStore {
               e.embedding <-> $1::vector AS distance
        FROM code_exemplar_embeddings e
        JOIN code_exemplars ce ON ce.id = e.exemplar_id
-       WHERE ce.install_scope = $2
+       WHERE ce.install_scope = $2 AND ce.retired_at IS NULL
        ORDER BY e.embedding <-> $1::vector
        LIMIT $3`, [vecStr, filter.installScope, overFetch]);
         let hits = res.rows.map((r) => ({
@@ -156,6 +157,29 @@ export class PgCodeExemplarStore {
         const res = await this.pool.query("DELETE FROM code_exemplars WHERE install_scope = $1 AND survived = 0", [installScope]);
         return res.rowCount ?? 0;
     }
+    async setVerdict(id, patch, source) {
+        const cur = await this.pool.query("SELECT label_source FROM code_exemplars WHERE id = $1", [id]);
+        if (cur.rows.length === 0)
+            return { status: "not_found" };
+        if (source === "llm" && cur.rows[0].label_source === "human")
+            return { status: "human_locked" };
+        const sets = [];
+        const values = [];
+        let n = 1;
+        sets.push(`label_source = $${n++}`);
+        values.push(source);
+        if (patch.retired !== undefined) {
+            sets.push(`retired_at = $${n++}`);
+            values.push(patch.retired ? new Date().toISOString() : null);
+        }
+        if (patch.outcome !== undefined) {
+            sets.push(`outcome = $${n++}`);
+            values.push(patch.outcome);
+        }
+        values.push(id);
+        await this.pool.query(`UPDATE code_exemplars SET ${sets.join(", ")} WHERE id = $${n}`, values);
+        return { status: "applied" };
+    }
     async pruneOlderThan(olderThanTs) {
         const res = await this.pool.query("DELETE FROM code_exemplars WHERE ts < $1", [olderThanTs]);
         return res.rowCount ?? 0;
@@ -177,6 +201,8 @@ export class PgCodeExemplarStore {
             survived: row.survived,
             ts: row.ts,
             createdAt: row.created_at,
+            retiredAt: row.retired_at,
+            labelSource: row.label_source,
         };
     }
 }

package/dist/core/storage/pg-code-exemplar-store.js.map

@@ -1 +1 @@
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package/dist/core/storage/sqlite-code-exemplar-store.d.ts

@@ -8,7 +8,7 @@
  * even when no embedder is configured.
  */
 import type Database from "better-sqlite3";
-import type { CodeExemplarSearchFilter, CodeExemplarStore } from "../../ports/code-exemplar-store.js";
+import type { CodeExemplarSearchFilter, CodeExemplarStore, ExemplarVerdictPatch, ExemplarVerdictResult, ExemplarVerdictSource } from "../../ports/code-exemplar-store.js";
 import type { CodeExemplar, CodeExemplarHit, CodeExemplarInput } from "../../shared/types.js";
 /**
  * Deterministic primary key: sha256(install_scope|repo|code_hash|outcome)[:16].
@@ -33,6 +33,7 @@ export declare class SqliteCodeExemplarStore implements CodeExemplarStore {
     getById(id: string): Promise<CodeExemplar | null>;
     applyBucketCap(installScope: string, maxPerBucket: number): Promise<number>;
     pruneReverted(installScope: string): Promise<number>;
+    setVerdict(id: string, patch: ExemplarVerdictPatch, source: ExemplarVerdictSource): Promise<ExemplarVerdictResult>;
     pruneOlderThan(olderThanTs: string): Promise<number>;
     private insertStmt;
     private toRow;

package/dist/core/storage/sqlite-code-exemplar-store.js

@@ -88,7 +88,7 @@ export class SqliteCodeExemplarStore {
             .prepare(`SELECT id, install_scope, signal_id, session_id, repo, model, lang,
                 task_context, code, code_hash, outcome, git_sha, survived, ts, created_at
          FROM code_exemplars
-         WHERE id IN (${placeholders}) AND install_scope = ?`)
+         WHERE id IN (${placeholders}) AND install_scope = ? AND retired_at IS NULL`)
             .all(...ids, filter.installScope);
         let hits = rows.map((r) => ({
             id: r.id,
@@ -123,7 +123,8 @@ export class SqliteCodeExemplarStore {
     async getById(id) {
         const row = this.db
             .prepare(`SELECT id, install_scope, signal_id, session_id, repo, model, lang,
-                task_context, code, code_hash, outcome, git_sha, survived, ts, created_at
+                task_context, code, code_hash, outcome, git_sha, survived, ts, created_at,
+                retired_at, label_source
          FROM code_exemplars WHERE id = ?`)
             .get(id);
         return row ? this.rowToExemplar(row) : null;
@@ -178,6 +179,27 @@ export class SqliteCodeExemplarStore {
         txn();
         return deleted;
     }
+    async setVerdict(id, patch, source) {
+        const row = this.db
+            .prepare("SELECT label_source FROM code_exemplars WHERE id = ?")
+            .get(id);
+        if (!row)
+            return { status: "not_found" };
+        if (source === "llm" && row.label_source === "human")
+            return { status: "human_locked" };
+        const sets = ["label_source = @source"];
+        const params = { id, source };
+        if (patch.retired !== undefined) {
+            sets.push("retired_at = @retiredAt");
+            params["retiredAt"] = patch.retired ? new Date().toISOString() : null;
+        }
+        if (patch.outcome !== undefined) {
+            sets.push("outcome = @outcome");
+            params["outcome"] = patch.outcome;
+        }
+        this.db.prepare(`UPDATE code_exemplars SET ${sets.join(", ")} WHERE id = @id`).run(params);
+        return { status: "applied" };
+    }
     async pruneOlderThan(olderThanTs) {
         const ids = this.db
             .prepare("SELECT id FROM code_exemplars WHERE ts < ?")
@@ -222,6 +244,8 @@ export class SqliteCodeExemplarStore {
             survived: inp.survived,
             ts: inp.ts,
             created_at: new Date().toISOString(),
+            retired_at: null,
+            label_source: "llm",
         };
     }
     rowToExemplar(row) {
@@ -241,6 +265,8 @@ export class SqliteCodeExemplarStore {
             survived: row.survived,
             ts: row.ts,
             createdAt: row.created_at,
+            retiredAt: row.retired_at,
+            labelSource: row.label_source,
         };
     }
 }

package/dist/core/storage/sqlite-code-exemplar-store.js.map

@@ -1 +1 @@
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package/dist/http/app.js

@@ -1565,6 +1565,34 @@ function registerSignalRoutes(app, deps) {
         }
         return c.json({ id, skipped, status: "accepted" }, 202);
     });
+    app.post("/api/exemplar/:id/verdict", async (c) => {
+        if (!deps.exemplarStore) {
+            return c.json({ error: "exemplar store not wired in this deployment" }, 503);
+        }
+        if (process.env["NLM_CODE_EXEMPLARS_ENABLED"] !== "1") {
+            return c.json({ error: "code exemplars disabled" }, 403);
+        }
+        let body;
+        try {
+            body = (await c.req.json());
+        }
+        catch {
+            return c.json({ error: "body must be JSON" }, 400);
+        }
+        const patch = {};
+        if (typeof body.retire === "boolean")
+            patch.retired = body.retire;
+        if (body.outcome === "pass" || body.outcome === "fail" || body.outcome === "fix" || body.outcome === "exhausted") {
+            patch.outcome = body.outcome;
+        }
+        if (patch.retired === undefined && patch.outcome === undefined) {
+            return c.json({ error: "provide retire (boolean) and/or outcome" }, 400);
+        }
+        const result = await deps.exemplarStore.setVerdict(c.req.param("id"), patch, "human");
+        if (result.status === "not_found")
+            return c.json({ error: "exemplar not found" }, 404);
+        return c.json({ id: c.req.param("id"), status: result.status }, 200);
+    });
     app.get("/api/recall-code", async (c) => {
         if (!deps.exemplarStore || deps.installScope === undefined) {
             return c.json({ error: "exemplar store not wired in this deployment" }, 503);