nlm-memory 0.16.0 → 0.18.0

package/dist/mcp/server.js

@@ -668,6 +668,28 @@ export function createMcpServer(deps) {
             }, exemplarStore, codeEmbedder, null);
             return { content: [{ type: "text", text: format(result) }] };
         });
+        server.registerTool("supersede_exemplar", {
+            title: "Supersede a Code Exemplar",
+            description: "Retire (exclude from recall) or relabel the outcome of a code exemplar returned by recall_code. Records the change as a human verdict, which an automated pass will not override.",
+            inputSchema: {
+                exemplar_id: z.string().min(4).describe("Exemplar id from recall_code."),
+                retire: z.boolean().optional().describe("true to exclude from recall, false to restore."),
+                outcome: z.enum(["pass", "fail", "fix", "exhausted"]).optional().describe("Relabel the exemplar's outcome."),
+            },
+            annotations: { readOnlyHint: false, destructiveHint: false, idempotentHint: true, openWorldHint: false },
+        }, async (args) => {
+            const a = args;
+            const patch = {};
+            if (a.retire !== undefined)
+                patch.retired = a.retire;
+            if (a.outcome !== undefined)
+                patch.outcome = a.outcome;
+            if (patch.retired === undefined && patch.outcome === undefined) {
+                return { content: [{ type: "text", text: JSON.stringify({ error: "provide retire and/or outcome" }) }] };
+            }
+            const res = await exemplarStore.setVerdict(a.exemplar_id, patch, "human");
+            return { content: [{ type: "text", text: JSON.stringify({ exemplar_id: a.exemplar_id, status: res.status }) }] };
+        });
     }
     return server;
 }

package/dist/mcp/server.js.map

@@ -1 +1 @@
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package/dist/ports/code-exemplar-store.d.ts

@@ -7,7 +7,15 @@
  * vec lane is optional — inserts succeed without an embedding; search
  * requires one.
  */
-import type { CodeExemplar, CodeExemplarHit, CodeExemplarInput } from "../shared/types.js";
+import type { CodeExemplar, CodeExemplarHit, CodeExemplarInput, CodeExemplarOutcome } from "../shared/types.js";
+export type ExemplarVerdictSource = "llm" | "human";
+export interface ExemplarVerdictPatch {
+    readonly retired?: boolean;
+    readonly outcome?: CodeExemplarOutcome;
+}
+export interface ExemplarVerdictResult {
+    readonly status: "applied" | "not_found" | "human_locked";
+}
 export interface CodeExemplarSearchFilter {
     readonly installScope: string;
     readonly repo?: string;
@@ -42,4 +50,10 @@ export interface CodeExemplarStore {
     pruneReverted(installScope: string): Promise<number>;
     /** Delete exemplars with ts < olderThanTs (optional clock-based escape hatch). */
     pruneOlderThan(olderThanTs: string): Promise<number>;
+    /**
+     * Apply an operator/LLM verdict (retire/un-retire and/or relabel outcome).
+     * Human-wins: a `source: "llm"` call is a no-op when the row is already
+     * `label_source: "human"`. Returns the outcome so callers can surface it.
+     */
+    setVerdict(id: string, patch: ExemplarVerdictPatch, source: ExemplarVerdictSource): Promise<ExemplarVerdictResult>;
 }

package/dist/shared/types.d.ts

@@ -277,6 +277,8 @@ export interface CodeExemplarInput {
 export interface CodeExemplar extends CodeExemplarInput {
     readonly id: string;
     readonly createdAt: string;
+    readonly retiredAt: string | null;
+    readonly labelSource: "llm" | "human";
 }
 /** One result row from recall_code. */
 export interface CodeExemplarHit {

package/migrations/023_code_exemplars_supersedence.sql

@@ -0,0 +1,10 @@
+-- Migration 023: code_exemplars supersedence — operator/LLM verdict on exemplars.
+--
+-- retired_at: non-null = excluded from recall (the "verdict"), like facts.retired_at.
+-- label_source: who last set the verdict/outcome ('llm' at capture; 'human' on
+-- operator override). A human verdict is sticky — see CodeExemplarStore.setVerdict.
+
+ALTER TABLE code_exemplars ADD COLUMN retired_at TEXT;
+ALTER TABLE code_exemplars ADD COLUMN label_source TEXT NOT NULL DEFAULT 'llm';
+
+INSERT OR IGNORE INTO schema_migrations (version, name) VALUES (23, '023_code_exemplars_supersedence');

package/migrations/pg/001_initial.sql

@@ -237,7 +237,9 @@ CREATE TABLE IF NOT EXISTS code_exemplars (
   git_sha       TEXT,
   survived      INTEGER,
   ts            TEXT NOT NULL,
-  created_at    TEXT NOT NULL DEFAULT (now()::text)
+  created_at    TEXT NOT NULL DEFAULT (now()::text),
+  retired_at    TEXT,
+  label_source  TEXT NOT NULL DEFAULT 'llm'
 );
 CREATE INDEX IF NOT EXISTS idx_exemplars_scope_repo ON code_exemplars(install_scope, repo, outcome);
 CREATE INDEX IF NOT EXISTS idx_exemplars_ts ON code_exemplars(ts);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "nlm-memory",
-  "version": "0.16.0",
+  "version": "0.18.0",
   "description": "Local-first non-linear memory operating system for AI operators.",
   "type": "module",
   "license": "Apache-2.0",

package/plugin/.codex-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "nlm-memory",
-  "version": "0.16.0",
+  "version": "0.18.0",
   "description": "Local-first persistent memory for AI coding agents. Recalls relevant prior sessions on every prompt; learns which sessions actually get cited. Owner-edited timeline beats append-only memory layers.",
   "author": {
     "name": "Edward Chalupa",

package/migrations/pg/018_repair_self_supersede.sql

@@ -1,16 +0,0 @@
--- PG parity for SQLite migration 018: repair self-supersedence damage.
---
--- One-shot repair, applied manually by an operator against a PG canonical
--- store (PgStorage.init only runs 001_initial.sql, there is no version-gated
--- runner on the PG side). Mirrors migrations/018_repair_self_supersede.sql.
---
--- Removes self-loop 'supersedes' edges (id -> id) written by the unguarded
--- scan path, then restores sessions wrongly marked superseded — those left
--- without any real incoming 'supersedes' edge.
-
-DELETE FROM session_edges WHERE from_session = to_session AND kind = 'supersedes';
-
-UPDATE sessions
-SET status = 'closed', updated_at = NOW()
-WHERE status = 'superseded'
-  AND id NOT IN (SELECT to_session FROM session_edges WHERE kind = 'supersedes');

package/migrations/pg/020_collapse_duplicate_active_facts.sql

@@ -1,46 +0,0 @@
--- PG parity for SQLite migration 020: collapse duplicate active facts (#301).
---
--- One-shot repair, applied manually by an operator against a PG canonical store
--- (PgStorage.init only runs 001_initial.sql; there is no version-gated runner on
--- the PG side). Mirrors migrations/020_collapse_duplicate_active_facts.sql.
---
--- Within each conflicting (subject, predicate) group, the newest active fact
--- (created_at, then id) stays active; the older actives get superseded_by set
--- to that newest fact's id. The PG ingest path already collapsed all priors
--- set-wise, so this only repairs rows the SQLite-era single-prior loop stranded
--- in a corpus migrated to PG.
-
-BEGIN;
-
-WITH winners AS (
-  SELECT subject, predicate, id AS winner_id
-  FROM (
-    SELECT
-      subject, predicate, id,
-      ROW_NUMBER() OVER (
-        PARTITION BY subject, predicate
-        ORDER BY created_at DESC, id DESC
-      ) AS rn
-    FROM facts
-    WHERE superseded_by IS NULL
-  ) ranked
-  WHERE rn = 1
-),
-conflicts AS (
-  SELECT subject, predicate
-  FROM facts
-  WHERE superseded_by IS NULL
-  GROUP BY subject, predicate
-  HAVING COUNT(*) > 1
-)
-UPDATE facts f
-SET superseded_by = w.winner_id
-FROM winners w, conflicts c
-WHERE f.subject = w.subject
-  AND f.predicate = w.predicate
-  AND f.subject = c.subject
-  AND f.predicate = c.predicate
-  AND f.superseded_by IS NULL
-  AND f.id != w.winner_id;
-
-COMMIT;

package/migrations/pg/021_code_exemplars.sql

@@ -1,45 +0,0 @@
--- PG parity for SQLite migration 021: code_exemplars lane.
---
--- Mirrors migrations/021_code_exemplars.sql. Uses pgvector `vector(768)`
--- instead of sqlite-vec `vec0`. Applied manually by an operator.
-
-BEGIN;
-
-CREATE TABLE IF NOT EXISTS code_exemplars (
-  id            TEXT PRIMARY KEY,
-  install_scope TEXT NOT NULL,
-  signal_id     TEXT,
-  session_id    TEXT,
-  repo          TEXT NOT NULL,
-  model         TEXT NOT NULL,
-  lang          TEXT,
-  task_context  TEXT NOT NULL,
-  code          TEXT NOT NULL,
-  code_hash     TEXT NOT NULL,
-  outcome       TEXT NOT NULL CHECK (outcome IN ('pass','fail','fix','exhausted')),
-  git_sha       TEXT,
-  survived      SMALLINT,
-  ts            TEXT NOT NULL,
-  created_at    TIMESTAMPTZ NOT NULL DEFAULT NOW()
-);
-
-CREATE INDEX IF NOT EXISTS idx_exemplars_scope_repo
-  ON code_exemplars(install_scope, repo, outcome);
-
-CREATE INDEX IF NOT EXISTS idx_exemplars_ts
-  ON code_exemplars(ts);
-
-CREATE INDEX IF NOT EXISTS idx_exemplars_code_hash
-  ON code_exemplars(install_scope, code_hash);
-
--- Vector lane. 768 dims matches CodeRankEmbed-137M output.
-CREATE TABLE IF NOT EXISTS code_exemplars_vec (
-  exemplar_id  TEXT PRIMARY KEY,
-  embedding    vector(768) NOT NULL
-);
-
-CREATE INDEX IF NOT EXISTS code_exemplars_vec_embedding_idx
-  ON code_exemplars_vec USING ivfflat (embedding vector_l2_ops)
-  WITH (lists = 10);
-
-COMMIT;

package/migrations/pg/022_facts_retired_at.sql

@@ -1,12 +0,0 @@
--- PG parity for SQLite migration 022: facts.retired_at.
---
--- Mirrors migrations/022_facts_retired_at.sql. Distinct nullable marker for
--- operator retirement of incorrect facts (NLM #326). Recall excludes retired
--- facts; getHistory / includeSuperseded still surface them. Applied manually
--- by an operator.
-
-BEGIN;
-
-ALTER TABLE facts ADD COLUMN IF NOT EXISTS retired_at TEXT;
-
-COMMIT;