nlm-memory 0.11.1 → 0.13.0

package/dist/core/recall-facts/fact-recall-service.js.map

@@ -1 +1 @@
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package/dist/core/scheduler/scheduler.d.ts

@@ -21,8 +21,10 @@ import type { TranscriptAdapter } from "../../ports/transcript-adapter.js";
 import type { SignalStore } from "../../ports/signal-store.js";
 import type { SqliteFactStore } from "../storage/sqlite-fact-store.js";
 import type { SqliteSessionStore } from "../storage/sqlite-session-store.js";
+import { PgSessionStore } from "../storage/pg-session-store.js";
+import type { PgFactStore } from "../storage/pg-fact-store.js";
 export interface SchedulerOptions {
-    readonly store: SqliteSessionStore;
+    readonly store: SqliteSessionStore | PgSessionStore;
     readonly adapters: ReadonlyArray<TranscriptAdapter>;
     readonly classifier: LLMClient;
     readonly embedder?: LLMClient | null;
@@ -33,7 +35,7 @@ export interface SchedulerOptions {
      * with no facts written (backwards-compatible default for tests not yet
      * updated, and for any future caller that wants facts off).
      */
-    readonly factStore?: SqliteFactStore | null;
+    readonly factStore?: SqliteFactStore | PgFactStore | null;
     /** SignalStore for the self-improvement lane. When set, the tick drains
      *  each chunk's embedded nlm.signal payloads, decoupled from classification. */
     readonly signalStore?: SignalStore | null;

package/dist/core/scheduler/scheduler.js

@@ -21,6 +21,7 @@ import { dirname, join } from "node:path";
 import { homedir } from "node:os";
 import { extractFacts } from "../facts/extract-facts.js";
 import { normalizeSignal } from "../signals/ingest-signal.js";
+import { PgSessionStore } from "../storage/pg-session-store.js";
 import { MAX_CLASSIFY_FAILURES, getFileSize, recordClassified, recordClassifiedPg, recordFailed, recordFailedPg, recordSkippedLowConfidence, recordSkippedLowConfidencePg, scanOnce, scanOncePg } from "./scan-once.js";
 import { runCheapChecksOnSqlite } from "../integrity/check-invariants.js";
 const DEFAULT_INTERVAL_MS = 30 * 60 * 1000; // 30 min, matches Python default
@@ -102,10 +103,14 @@ export class ScanScheduler {
         let storageFailures = 0;
         let chunksSeen = 0;
         const now = Date.now();
-        const _pgPool = this.opts.store.pgPool?.();
+        // Backend split: exactly one of (_pgPool, sqliteDb) is non-null. PG branches
+        // use the pool; SQLite branches use the raw better-sqlite3 handle.
+        const store = this.opts.store;
+        const _pgPool = store instanceof PgSessionStore ? store.pool : null;
+        const sqliteDb = store instanceof PgSessionStore ? null : store.rawDb();
         if (!_pgPool && shouldRunIntegrityCheck(now)) {
             try {
-                const violations = runCheapChecksOnSqlite(this.opts.store.rawDb());
+                const violations = runCheapChecksOnSqlite(sqliteDb);
                 markIntegrityCheckRan(now);
                 for (const v of violations) {
                     this.opts.logger(`[integrity] FAIL ${v.id} count=${v.count} ${v.description}  run \`nlm doctor\` to inspect or \`nlm doctor --fix\` to repair`);
@@ -120,7 +125,7 @@ export class ScanScheduler {
             try {
                 results = _pgPool
                     ? await scanOncePg(adapter, this.opts.idleMinutes, _pgPool)
-                    : await scanOnce(adapter, this.opts.idleMinutes, this.opts.store.rawDb());
+                    : await scanOnce(adapter, this.opts.idleMinutes, sqliteDb);
             }
             catch (e) {
                 this.opts.logger(`[scheduler] scanOnce error for ${adapter.name}: ${e instanceof Error ? e.message : String(e)}`);
@@ -141,8 +146,8 @@ export class ScanScheduler {
                         count = await recordFailedPg(_pgPool, adapter.name, chunk.sourcePath, getFileSize(chunk.sourcePath));
                     }
                     else {
-                        recordFailed(this.opts.store.rawDb(), adapter.name, chunk.sourcePath);
-                        count = this.opts.store.rawDb()
+                        recordFailed(sqliteDb, adapter.name, chunk.sourcePath);
+                        count = sqliteDb
                             .prepare("SELECT COALESCE(failure_count, 0) AS failure_count FROM adapter_state WHERE adapter_name = ? AND source_path = ?")
                             .get(adapter.name, chunk.sourcePath)?.failure_count ?? 1;
                     }
@@ -156,7 +161,7 @@ export class ScanScheduler {
                         await recordSkippedLowConfidencePg(_pgPool, adapter.name, chunk.sourcePath);
                     }
                     else {
-                        recordSkippedLowConfidence(this.opts.store.rawDb(), adapter.name, chunk.sourcePath);
+                        recordSkippedLowConfidence(sqliteDb, adapter.name, chunk.sourcePath);
                     }
                     this.opts.logger(`[scheduler] low-confidence (${classification.confidence} < ${this.opts.confidenceFloor}) for ${chunk.id} - skipping until file grows`);
                     continue;
@@ -180,19 +185,25 @@ export class ScanScheduler {
                     decisions: classification.decisions,
                     openQuestions: classification.open,
                 };
-                const factSink = this.opts.factStore
-                    ? {
-                        factStore: this.opts.factStore,
-                        facts: extractFacts(classification, chunk.id, chunk.startedAt),
-                    }
-                    : null;
+                const supersedesArg = supersedes ? { priorSessionId: supersedes, kind: "replaces" } : null;
+                const facts = this.opts.factStore
+                    ? extractFacts(classification, chunk.id, chunk.startedAt)
+                    : [];
                 try {
-                    await this.opts.store.insertSession(record, this.opts.embedder, supersedes ? { priorSessionId: supersedes, kind: "replaces" } : null, factSink);
+                    // Store + factStore are constructed from the same backend, so the
+                    // factStore cast below is sound — TS just can't correlate the two
+                    // union members across a single call site.
+                    if (store instanceof PgSessionStore) {
+                        await store.insertSession(record, this.opts.embedder, supersedesArg, this.opts.factStore ? { factStore: this.opts.factStore, facts } : null);
+                    }
+                    else {
+                        await store.insertSession(record, this.opts.embedder, supersedesArg, this.opts.factStore ? { factStore: this.opts.factStore, facts } : null);
+                    }
                     if (_pgPool) {
                         await recordClassifiedPg(_pgPool, adapter.name, chunk.sourcePath, chunk.id);
                     }
                     else {
-                        recordClassified(this.opts.store.rawDb(), adapter.name, chunk.sourcePath, chunk.id);
+                        recordClassified(sqliteDb, adapter.name, chunk.sourcePath, chunk.id);
                     }
                     inserted += 1;
                 }
@@ -202,7 +213,7 @@ export class ScanScheduler {
                         await recordFailedPg(_pgPool, adapter.name, chunk.sourcePath, getFileSize(chunk.sourcePath));
                     }
                     else {
-                        recordFailed(this.opts.store.rawDb(), adapter.name, chunk.sourcePath);
+                        recordFailed(sqliteDb, adapter.name, chunk.sourcePath);
                     }
                     this.opts.logger(`[scheduler] storage error for ${chunk.id}: ${e instanceof Error ? e.message : String(e)}`);
                 }

package/dist/core/scheduler/scheduler.js.map

@@ -1 +1 @@
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package/dist/core/sources/source-registry.d.ts

@@ -44,27 +44,46 @@ export interface SourceUpdate {
     readonly parseConfig?: Record<string, unknown>;
     readonly enabled?: boolean;
 }
-export declare class SourceRegistry {
+/**
+ * SourceRegistryPort — the backend-agnostic source-registry contract that
+ * SqliteStorage and PgStorage expose as `storage.sources`. Async across both
+ * backends (the SQLite impl declares async methods with sync bodies, matching
+ * the SignalStore/FactStore convention). `getToken` is intentionally NOT on the
+ * port — only the not-yet-ported scheduler reads it, via rawDb directly.
+ */
+export interface SourceRegistryPort {
+    list(): Promise<SourceRow[]>;
+    get(id: number): Promise<SourceRow | null>;
+    getByName(name: string): Promise<SourceRow | null>;
+    insert(input: SourceInsert): Promise<SourceRow>;
+    findByToken(token: string): Promise<SourceRow | null>;
+    regenerateToken(id: number): Promise<string | null>;
+    update(id: number, patch: SourceUpdate): Promise<SourceRow | null>;
+    delete(id: number): Promise<boolean>;
+    seedDefaults(): Promise<void>;
+}
+export declare class SourceRegistry implements SourceRegistryPort {
     private readonly db;
     constructor(db: Database.Database);
-    list(): SourceRow[];
-    get(id: number): SourceRow | null;
-    getByName(name: string): SourceRow | null;
-    insert(input: SourceInsert): SourceRow;
+    list(): Promise<SourceRow[]>;
+    get(id: number): Promise<SourceRow | null>;
+    getByName(name: string): Promise<SourceRow | null>;
+    insert(input: SourceInsert): Promise<SourceRow>;
     /** Daemon-internal: resolve a bearer token to its owning source. */
-    findByToken(token: string): SourceRow | null;
-    /** Daemon-internal: returns the raw token. Never echo to HTTP responses. */
+    findByToken(token: string): Promise<SourceRow | null>;
+    /** Daemon-internal: returns the raw token. Never echo to HTTP responses.
+     *  Not on SourceRegistryPort — only the (unported) scheduler reads it. */
     getToken(id: number): string | null;
     /** Mint a fresh token, invalidating any previous one. */
-    regenerateToken(id: number): string | null;
-    update(id: number, patch: SourceUpdate): SourceRow | null;
-    delete(id: number): boolean;
+    regenerateToken(id: number): Promise<string | null>;
+    update(id: number, patch: SourceUpdate): Promise<SourceRow | null>;
+    delete(id: number): Promise<boolean>;
     /**
      * Seed the three legacy adapter presets on first boot of an empty
      * registry. Subsequent boots are no-ops. Respects per-runtime env
      * overrides so existing installs don't lose their custom paths.
      */
-    seedDefaults(): void;
+    seedDefaults(): Promise<void>;
 }
 import type { Pool } from "pg";
 /**
@@ -72,11 +91,16 @@ import type { Pool } from "pg";
  * Takes a pg.Pool instead of better-sqlite3.Database.
  * API mirrors SourceRegistry exactly so callers swap the constructor arg.
  */
-export declare class PgSourceRegistry {
+export declare class PgSourceRegistry implements SourceRegistryPort {
     private readonly pool;
     constructor(pool: Pool);
     list(): Promise<SourceRow[]>;
     get(id: number): Promise<SourceRow | null>;
+    getByName(name: string): Promise<SourceRow | null>;
+    /** Daemon-internal: resolve a bearer token to its owning source. */
+    findByToken(token: string): Promise<SourceRow | null>;
+    /** Mint a fresh token, invalidating any previous one. Webhook sources only. */
+    regenerateToken(id: number): Promise<string | null>;
     insert(input: SourceInsert): Promise<SourceRow>;
     update(id: number, patch: SourceUpdate): Promise<SourceRow | null>;
     delete(id: number): Promise<boolean>;

package/dist/core/sources/source-registry.js

@@ -51,19 +51,19 @@ export class SourceRegistry {
     constructor(db) {
         this.db = db;
     }
-    list() {
+    async list() {
         const rows = this.db.prepare(`SELECT * FROM sources ORDER BY id ASC`).all();
         return rows.map((r) => rowFromDb(r));
     }
-    get(id) {
+    async get(id) {
         const row = this.db.prepare(`SELECT * FROM sources WHERE id = ?`).get(id);
         return row ? rowFromDb(row) : null;
     }
-    getByName(name) {
+    async getByName(name) {
         const row = this.db.prepare(`SELECT * FROM sources WHERE name = ?`).get(name);
         return row ? rowFromDb(row) : null;
     }
-    insert(input) {
+    async insert(input) {
         const token = input.kind === "webhook" ? mintToken() : null;
         const stmt = this.db.prepare(`
       INSERT INTO sources (kind, name, path_or_url, runtime_label, parse_config, enabled, token)
@@ -87,20 +87,21 @@ export class SourceRegistry {
         return rowFromDb(dbRow, token);
     }
     /** Daemon-internal: resolve a bearer token to its owning source. */
-    findByToken(token) {
+    async findByToken(token) {
         if (!token)
             return null;
         const row = this.db.prepare(`SELECT * FROM sources WHERE token = ?`).get(token);
         return row ? rowFromDb(row) : null;
     }
-    /** Daemon-internal: returns the raw token. Never echo to HTTP responses. */
+    /** Daemon-internal: returns the raw token. Never echo to HTTP responses.
+     *  Not on SourceRegistryPort — only the (unported) scheduler reads it. */
     getToken(id) {
         const row = this.db.prepare(`SELECT token FROM sources WHERE id = ?`).get(id);
         return row?.token ?? null;
     }
     /** Mint a fresh token, invalidating any previous one. */
-    regenerateToken(id) {
-        const current = this.get(id);
+    async regenerateToken(id) {
+        const current = await this.get(id);
         if (!current || current.kind !== "webhook")
             return null;
         const token = mintToken();
@@ -108,7 +109,7 @@ export class SourceRegistry {
             .run(token, id);
         return token;
     }
-    update(id, patch) {
+    async update(id, patch) {
         const fields = [];
         const params = { id };
         if (patch.name !== undefined) {
@@ -137,7 +138,7 @@ export class SourceRegistry {
         this.db.prepare(`UPDATE sources SET ${fields.join(", ")} WHERE id = @id`).run(params);
         return this.get(id);
     }
-    delete(id) {
+    async delete(id) {
         const result = this.db.prepare(`DELETE FROM sources WHERE id = ?`).run(id);
         return result.changes > 0;
     }
@@ -146,7 +147,7 @@ export class SourceRegistry {
      * registry. Subsequent boots are no-ops. Respects per-runtime env
      * overrides so existing installs don't lose their custom paths.
      */
-    seedDefaults() {
+    async seedDefaults() {
         const count = this.db.prepare(`SELECT COUNT(*) AS c FROM sources`).get();
         if ((count?.c ?? 0) > 0)
             return;
@@ -229,9 +230,29 @@ export class SourceRegistry {
             },
         ];
         for (const p of presets)
-            this.insert(p);
+            await this.insert(p);
     }
 }
+function pgRowToSource(r) {
+    return {
+        id: r.id,
+        kind: r.kind,
+        name: r.name,
+        pathOrUrl: r.path_or_url,
+        runtimeLabel: r.runtime_label,
+        parseConfig: (() => { try {
+            return JSON.parse(r.parse_config);
+        }
+        catch {
+            return {};
+        } })(),
+        enabled: r.enabled,
+        token: null,
+        hasToken: r.token !== null && r.token.length > 0,
+        createdAt: r.created_at,
+        updatedAt: r.updated_at,
+    };
+}
 /**
  * PgSourceRegistry — CRUD over `sources` for the PG storage path.
  * Takes a pg.Pool instead of better-sqlite3.Database.
@@ -246,24 +267,7 @@ export class PgSourceRegistry {
         const result = await this.pool.query(`SELECT id, kind, name, path_or_url, runtime_label, parse_config,
               enabled, token, created_at, updated_at
        FROM sources ORDER BY id`);
-        return result.rows.map((r) => ({
-            id: r.id,
-            kind: r.kind,
-            name: r.name,
-            pathOrUrl: r.path_or_url,
-            runtimeLabel: r.runtime_label,
-            parseConfig: (() => { try {
-                return JSON.parse(r.parse_config);
-            }
-            catch {
-                return {};
-            } })(),
-            enabled: r.enabled,
-            token: null,
-            hasToken: r.token !== null && r.token.length > 0,
-            createdAt: r.created_at,
-            updatedAt: r.updated_at,
-        }));
+        return result.rows.map(pgRowToSource);
     }
     async get(id) {
         const result = await this.pool.query(`SELECT id, kind, name, path_or_url, runtime_label, parse_config,
@@ -271,20 +275,31 @@ export class PgSourceRegistry {
        FROM sources WHERE id = $1`, [id]);
         if (!result.rows[0])
             return null;
-        const r = result.rows[0];
-        return {
-            id: r.id, kind: r.kind, name: r.name, pathOrUrl: r.path_or_url,
-            runtimeLabel: r.runtime_label,
-            parseConfig: (() => { try {
-                return JSON.parse(r.parse_config);
-            }
-            catch {
-                return {};
-            } })(),
-            enabled: r.enabled, token: null,
-            hasToken: r.token !== null && r.token.length > 0,
-            createdAt: r.created_at, updatedAt: r.updated_at,
-        };
+        return pgRowToSource(result.rows[0]);
+    }
+    async getByName(name) {
+        const result = await this.pool.query(`SELECT id, kind, name, path_or_url, runtime_label, parse_config,
+              enabled, token, created_at, updated_at
+       FROM sources WHERE name = $1`, [name]);
+        return result.rows[0] ? pgRowToSource(result.rows[0]) : null;
+    }
+    /** Daemon-internal: resolve a bearer token to its owning source. */
+    async findByToken(token) {
+        if (!token)
+            return null;
+        const result = await this.pool.query(`SELECT id, kind, name, path_or_url, runtime_label, parse_config,
+              enabled, token, created_at, updated_at
+       FROM sources WHERE token = $1`, [token]);
+        return result.rows[0] ? pgRowToSource(result.rows[0]) : null;
+    }
+    /** Mint a fresh token, invalidating any previous one. Webhook sources only. */
+    async regenerateToken(id) {
+        const current = await this.get(id);
+        if (!current || current.kind !== "webhook")
+            return null;
+        const token = mintToken();
+        await this.pool.query("UPDATE sources SET token = $1, updated_at = NOW() WHERE id = $2", [token, id]);
+        return token;
     }
     async insert(input) {
         // Webhook sources get a token minted at insert time — revealed once on the

package/dist/core/sources/source-registry.js.map

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package/dist/core/storage/backup-rotation.d.ts

@@ -0,0 +1,38 @@
+/**
+ * Rolling daily backups of the canonical store.
+ *
+ * A dated snapshot (`canonical-YYYY-MM-DD.sqlite`) is written via VACUUM INTO
+ * (live-consistent, see db-restore.vacuumSnapshot) into `<dbDir>/backups/`, and
+ * snapshots older than the retention window are pruned. This is the worst-case
+ * mitigation: a bad migration that silently corrupts canonical.sqlite is
+ * recoverable from yesterday's snapshot via `nlm restore --from <date>`.
+ *
+ * The date arithmetic (which snapshots to prune, filename <-> date) is pure and
+ * unit-tested; the IO wrapper lives in `runRollingBackup`.
+ */
+import Database from "better-sqlite3";
+export declare function backupDir(dbPath: string): string;
+export declare function backupFilename(date: string): string;
+/** Extract the YYYY-MM-DD date from a backup filename, or null if it isn't one. */
+export declare function parseBackupDate(filename: string): string | null;
+/**
+ * Given the backup filenames present, the retention window, and today's date,
+ * return the filenames to delete — those whose date is more than
+ * `retentionDays` before `today`. Non-backup filenames are ignored. Pure.
+ */
+export declare function backupsToPrune(filenames: ReadonlyArray<string>, retentionDays: number, today: string): string[];
+export interface RollingBackupResult {
+    readonly written: string;
+    readonly bytes: number;
+    readonly pruned: ReadonlyArray<string>;
+}
+/**
+ * Write today's snapshot and prune expired ones. `today` is injected
+ * (YYYY-MM-DD) so the rotation is deterministic and testable. Idempotent: a
+ * second call on the same day overwrites the day's snapshot.
+ */
+export declare function runRollingBackup(db: Database.Database, dbPath: string, today: string, retentionDays: number): RollingBackupResult;
+/** Resolve the snapshot file for a given date, or null if absent. */
+export declare function resolveBackup(dbPath: string, date: string): string | null;
+/** List available backup dates (descending), for error messages and `--list`. */
+export declare function listBackupDates(dbPath: string): string[];