nexusmem 0.10.4 → 0.11.0

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package/CHANGELOG.md CHANGED
@@ -1,16 +1,128 @@
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- # Changelog
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-
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- Notable changes per published version. Format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/);
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- this project uses [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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-
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- Tags were added retroactively on 2026-08-11 and point at the exact commits the npm tarballs were
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- built from, matched by publish timestamp: `v0.1.0` → `67a4776`, `v0.1.1` → `809e62c`,
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- `v0.1.2` → `b22a3b0`.
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-
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+ # Changelog
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+
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+ Notable changes per published version. Format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/);
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+ this project uses [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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+
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+ Tags were added retroactively on 2026-08-11 and point at the exact commits the npm tarballs were
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+ built from, matched by publish timestamp: `v0.1.0` → `67a4776`, `v0.1.1` → `809e62c`,
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+ `v0.1.2` → `b22a3b0`.
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+
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  ## [Unreleased]
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  No unreleased changes yet.
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+ ## [0.11.0] — 2026-09-27
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+
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+ ### Added
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+
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+ - Ambient memory for coding agents: `nexusmem agent install` wires NexusMem into Claude Code's own
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+ hooks, so what the agent tried is recorded and what it already tried is surfaced without anyone
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+ asking for either.
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+ - **Capture.** Every Bash command Claude Code runs, and every file it edits, is recorded with its
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+ outcome. Commands the agent runs are invisible to the shell hook, which only sees interactive
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+ prompts — this is what makes an agent's own dead ends memorable at all. Edits are attached to the
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+ command that follows them, so an attempt reads "edited a.ts, then npm test failed".
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+ - **Recall on failure.** When a command fails, NexusMem injects a short note only if that exact
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+ command failed here before, naming what was edited each time and what eventually fixed it. No
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+ match means no output.
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+ - **Session start.** Starts a background sync, then names commands that failed with no recorded
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+ fix — and, for one already fixed, which file(s) the fix touched — in about 150 tokens. A
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+ repository with nothing unresolved gets nothing.
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+ - Budgeted: at most one note per failure per session, five per session, and no embedding, model or
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+ network call on the path. If NexusMem is missing, broken or slow, the hook prints nothing and
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+ exits 0, and the agent carries on.
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+ - Commands the agent ran are redacted by the same recorder pattern as the shell hook: the raw text
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+ is hashed and redacted in memory, and only redacted text is written. Correlation matches on the
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+ hash, so two commands that differ only by a secret are never treated as the same command.
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+ - `nexusmem agent status` and `nexusmem agent remove` manage the hooks; `remove` takes only
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+ NexusMem's own entries. Installs into user settings by default, or `--project` for
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+ `.claude/settings.local.json`, never a settings file a team would commit.
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+ - `nexusmem agent status` also lists any path in the installed command that does not exist on this
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+ machine. Installing from one environment and running Claude Code in another (WSL vs. the Windows
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+ binary) writes paths the executing shell cannot resolve, and the hook then captures nothing with
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+ no error anywhere; the same line appears once the NexusMem it points at is moved or uninstalled.
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+ - Agent actions are ingested by every `sync`, and their arrival now runs failure→fix correlation
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+ without `--link-failures`.
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+
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+ ### Changed
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+
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+ - Failure→fix correlation treats an agent attempt as files changed, execution and result, rather
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+ than as a command string. When an agent-recorded command fails and the identical command later
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+ passes with nothing edited in between, that pass is reported as unexplained instead of being
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+ linked as the fix — the pass is real, the explanation is not. Human shell history records no files,
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+ so its linking is unchanged.
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+
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+ ### Fixed
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+
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+ - A command piped into `head`, `tail` or `tee` (`node check.js 2>&1 | head -100`) reports the
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+ filter's exit code to Claude Code's hook, not the command it fed — `PostToolUse` fired even when
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+ the piped command failed loudly, and the run was recorded as a false `ok`. Recorded as `unknown`
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+ instead, and a repeat of the same command surfaces an honestly-worded note rather than either a
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+ guessed pass or a guessed failure. A pipe into anything else (`| grep`, `| jq`, ...) is left
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+ untouched — nothing about its own exit code is known here.
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+ - The per-session injection quota — "explain a failure once per session" — was a plain read
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+ (`shouldInject`) then a later write (`markInjected`), racy across the separate OS processes Claude
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+ Code actually spawns per tool call: confirmed live, 3 of 20 concurrent invocations printed the same
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+ recall instead of 1. Replaced with a single lock-protected read-modify-write that never blocks —
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+ contention or a stale lock both decline rather than wait.
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+
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+ ## [0.10.5] — 2026-09-11
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+
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+ Security release. Existing installs need action after upgrading — see "Action required" below.
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+
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+ ### Security
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+
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+ - Secret redaction missed keys whose secret word is part of a longer identifier: `DB_PASSWORD=x`,
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+ `OPENAI_API_KEY=x`, `AUTH_TOKEN=x`, `CLIENT_SECRET=x` were kept verbatim (the rule's leading `\b`
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+ never matches after `_`), as were values shorter than 8 characters or containing characters such
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+ as `@ ! # $`. This affected `scan-shell` output, stored shell and conversation nodes, session
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+ summaries, the FTS index, embeddings, and `search_memory` / `query` results.
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+ - `shell_command` nodes stored the raw command in `meta.command`, so a typed secret was written to
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+ `memory.db` even when the title showed it redacted, and was printed by `scan-shell --json` and
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+ `precheck`. `meta.command` is now redacted; `meta.commandHash` keeps the raw command's hash so node
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+ ids and project-id reconciliation are unchanged.
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+ - The installed shell hooks appended every command raw to `~/.nexusmem/shell-history.jsonl`. Hooks now
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+ pass each command to a NexusMem recorder over stdin; the recorder hashes and redacts it in memory
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+ and writes only the redacted command. It writes no temp files and prints nothing, and it drops any
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+ event it cannot process instead of writing it raw. Hooks installed by earlier versions keep writing
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+ raw commands until reinstalled: `hook status` reports them as outdated, and `sync` redacts what they
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+ write and warns.
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+ - Redaction now also covers credentials in connection URIs (`postgres://user:pass@host`),
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+ `Authorization:` headers and bearer tokens, secret-named options whose value is the next argument
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+ (`--password x`), and `mysql -pX`, `sshpass -p`, `mongosh -p`, `redis-cli -a`, `curl -u user:pass`.
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+
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+ ### Added
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+
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+ - `nexusmem scrub-secrets [--all-projects] [--yes] [--no-embed]` removes secrets that earlier versions
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+ already stored: shell, conversation, session-summary and code-diff rows, contradiction reasons, the
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+ FTS index, embeddings, and the shell hook log. Dry run by default. `--yes` takes a backup of each
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+ database first and prints its path, redacts rows in place (ids unchanged), drops and re-embeds
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+ affected vectors, rebuilds the FTS index, runs `VACUUM`, and truncates the WAL. Safe to run
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+ repeatedly. Existing `memory.db.backup-*` files are listed, never modified or deleted.
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+
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+ ### Action required
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+
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+ 1. Upgrade every NexusMem install (global CLI, MCP server configs, the post-commit hook's `nexusmem`),
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+ then restart MCP clients and editors so no older version keeps writing.
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+ 2. Run `nexusmem hook install` again in each shell you installed the hook for; `nexusmem hook status`
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+ should say `installed`, not `OUTDATED`.
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+ 3. Rotate any credential typed at a shell prompt or pasted into a captured conversation in the
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+ affected forms. Scrubbing cannot recall copies already returned to an LLM, backed up, or synced.
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+ 4. Run `nexusmem scrub-secrets --all-projects`, review, then re-run with `--yes`.
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+ 5. Delete the `memory.db.backup-*` files NexusMem lists (they predate redaction) once you have
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+ verified the scrubbed database.
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+ 6. Do not use `nexusmem forget <secret>` for this: it stores the value itself in the database's
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+ deny-list, and the shell hook captures a bare argument unredacted.
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+
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+ ### Known limitations
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+
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+ - NexusMem cannot change your shell's own history files (PSReadLine `ConsoleHost_history.txt`,
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+ `~/.bash_history`, `~/.zsh_history`); they still contain whatever you typed.
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+ - Not yet redacted: a token used as a URL username (`https://TOKEN@host`), `openssl -passin`,
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+ `keytool -storepass`, `ssh-keygen -N`, secret-bearing keys without a secret word (`STRIPE_KEY`,
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+ `DB_PW`), secrets passed as plain positional arguments, and commit messages, docs and GitHub
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+ threads (never redacted).
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+
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  ## [0.10.4] — 2026-09-07
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  ### Added
@@ -29,645 +141,650 @@ No unreleased changes yet.
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  evidence is excluded from failure-to-fix correlation.
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  - Schema V13 adds `nodes.capture_mode` and nullable `nodes.source_ts`. Existing approximate
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  shell timestamps and document mtimes migrate to a null `source_ts`; other existing event timestamps are retained.
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-
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- ## [0.10.3] — 2026-08-31
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-
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- ### Added
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-
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- - `hook git-post install|remove|status`: an opt-in git post-commit hook that runs a full
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- `nexusmem sync` (including embedding) in the background after every commit. Detached (`nohup ... &`),
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- so it never makes `git commit` itself wait; output goes to `.nexusmem/post-commit-sync.log` instead
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- of the terminal. `sync` gained a matching `--auto` flag (used only by this hook) that skips instead
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- of running if another `--auto` sync already holds an advisory lock over the project's workspace dir —
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- a burst of commits (e.g. a rebase) coalesces into one sync instead of piling up. The log file is
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- reset once it passes 2000 lines so it can't grow forever, and a skipped/coalesced run is always
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- reported there, even though the hook always passes `--quiet`.
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-
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- ### Known limitations
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-
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- - A burst of commits fast enough to launch genuinely overlapping `sync --auto` processes can
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- interleave two runs' text mid-line in `.nexusmem/post-commit-sync.log` — the advisory lock
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- serializes the actual database writes (never at risk), not who gets to write to this diagnostic
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- log file. Cosmetic only; not planned to be fixed unless it turns out to matter in practice.
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-
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- ## [0.10.2] — 2026-08-30
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-
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- ### Security
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-
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- - `shell_command` nodes never ran through the same secret-redaction pass `conversation_turn` and
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- `code_diff` nodes already get: a command like `export API_KEY=...` landed verbatim in `title`/`body`,
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- which is exactly what the FTS index and vector embeddings are built from — a secret typed at a
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- prompt could resurface later through `search_memory`/`nexusmem query`. Fixed by running `redact()`
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- over the command before it reaches those fields. `meta.command` is kept raw on purpose: project-id
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- reconciliation and failure/fix correlation both hash or exact-match against the real command text,
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- and redacting that copy too would have silently orphaned nodes on a project-id migration.
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-
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- ## [0.10.1] — 2026-08-30
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-
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- ### Added
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-
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- - `nodes.retrieved_count`/`nodes.last_retrieved_at` (schema V12): retrieval outcomes are now recorded
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- instead of silently discarded. Bumped once per completed `nexusmem query`/MCP `search_memory` call,
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- for every node actually packed into the returned context (both CLI and MCP share one pipeline, so
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- both are covered from a single call site). Not yet folded into `rank.ts`'s score formula — every
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- existing ranking factor was tuned against real dogfooded queries and validated with `npm run eval`
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- before being trusted, and a new factor needs the same treatment. This release is the instrumentation
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- half only; confirmed eval-neutral (MRR 0.943 / Recall@5 0.964, unchanged).
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-
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- ### Fixed
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-
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- - `nexusmem precheck`'s "What already failed here" warning implied the failure was located in the
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- flagged file, but the match is against basename word-tokens (`tokensForFile`) — a failing `npm run
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- precheck` flagged every file whose name contained that word, not just the one actually responsible.
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- Reworded to state what's actually true ("commands naming this file failed").
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- - The high-churn warning in `nexusmem precheck` was rendered as a `WARN`, the same severity as the
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- dogfooded failure-correlation warning, despite `HIGH_CHURN_THRESHOLD` being an admitted, untuned
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- guess. Demoted to a lower-severity `note`, explicitly labeled as an untuned heuristic, so it no
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- longer reads as equally trustworthy.
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-
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- ## [0.10.0] — 2026-08-29
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-
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- ### Added
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- - New opt-in `github` source: `sources.github.enabled`, `nexusmem scan-github`, `sync --github`.
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- Reads issue/PR threads (title, body, comments) from this repo's github.com remote via the `gh`
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- CLI, one `github_thread` node per thread. First source with a real external dependency (needs `gh`
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- installed and authenticated) rather than reading only what's already on disk; a missing remote or
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- an unreachable `gh` is a silent no-op, matching how an unreachable Ollama degrades elsewhere.
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-
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- ## [0.9.1] — 2026-08-29
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- Three ranking/retrieval correctness fixes, found and validated against a new 28-case retrieval-quality
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- eval harness (`npm run eval`, dev-only, not part of the published package).
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-
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- ### Fixed
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-
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- - `nodes_vec` (vector search) over-fetched `k` globally, then filtered by `project_id` after the join —
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- a heuristic, not a guarantee. A sparse project sharing `memory.db` with a much larger one could have
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- every true nearest neighbour fall outside the over-fetch window and get silently dropped (reproduced:
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- 495 rows in one project + 5 in another, global `k=50` surfaced 0 of the 5). Schema V11 gives `nodes_vec`
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- a `PARTITION KEY` on `project_id` (`sqlite-vec` 0.1.9+), pushing the equality filter into the k-NN
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- search itself so cross-project exactness is now guaranteed, not probable. Migrates existing databases
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- automatically on next `sync`/`query`. `--as-of` date filtering still over-fetches — only the
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- `project_id` dimension was ever a correctness guarantee.
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- - `MAX_PRIOR_OVERTURN` (the cap on how far a recency/signal prior may overturn relevance) raised
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- `2 → 2.4`, the highest value that both improves eval MRR (0.924→0.943) and still passes every legacy
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- regression test guarding against the original same-day-fix-commits bug this constant exists to bound.
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- - A commit's `code_diff` siblings (one node per changed file, all sharing the same `ts`) could crowd a
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- packed result and bury that commit's own `git_commit` node — its answer — several ranks down. Now
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- capped per commit, matching the existing `conversation_turn`/`doc_section` family cap.
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- - `package.json`/`tsconfig.json` diffs were ranking above more relevant results when a changed file's
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- path happened to echo its commit's conventional-commit scope (title is weighted 10x body, so the scope
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- word counted twice). Down-weighted as mechanical wiring, same reasoning `TEST_PATHS` already applies to
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- tests. Only affects nodes ingested from here on — existing manifest/config diffs need `sync --rebuild`
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- to get the corrected signal retroactively.
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-
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- ## [0.9.0] — 2026-08-27
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-
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- Closes the three remaining mechanisms from a recurring external review (Simon Strandgaard, Agent
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- Memory Atlas): trust_state, bi-temporal reads, and a dismiss verb for standing suggestions. Also
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- fixes two real Windows-specific correctness bugs found dogfooding.
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-
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- ### Added
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-
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- - `nodes.trust_state` (`candidate` | `verified` | `rejected`, schema V10) and `nexusmem review
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- <nodeId> --verify|--reject`: a human verdict on a node, independent of the SLM contradiction
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- checker. `--reject` down-weights ranking (harsher than the existing supersede penalty, since a
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- human said no directly); `--verify` is a label only, no ranking boost. Both render as a tag in
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- packed context. Never deletes — same demote-not-delete rule as `mark-stale`.
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- - `--as-of <date>` on `nexusmem query` and the MCP `search_memory` tool: restricts both the BM25
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- and vector arms to nodes recorded at or before that instant via `created_at` (record time),
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- independent of how old the events themselves (`ts`, event time) are. Read-only — there is no
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- equivalent write, and nodes stay write-once.
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- - `nexusmem stale --dismiss`: silences a contradiction suggestion the user disagrees with, without
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- fabricating a `supersedes` relationship. Previously a wrong `--check-contradictions` verdict had
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- no way to be rejected — it re-decorated every future `stale`/`sync` run forever.
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- - `--prune-source`/`--prune-stale-shell` now record a `mutation_audit` row on their `--yes` path,
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- matching what `forget` already did. The dry-run preview stays a pure read.
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-
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- ### Fixed
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-
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- - `git rev-parse` failures reported as "error launching git: Access is denied." (Git for Windows'
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- launcher shim failing to exec `git.exe` under handle/AV contention) were treated as git's own
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- verdict instead of a transient spawn failure, turning a one-off environment hiccup into a hard
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- failure. Now retried the same as the other known transient-spawn classes.
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- - The PowerShell prompt hook read only `$LASTEXITCODE`, which cmdlets (`Remove-Item`, `Copy-Item`,
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- …) never set — every failing cmdlet was silently logged as a success, and a stale
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- `$LASTEXITCODE` from an earlier native command could misattribute to later successful cmdlet
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- runs. Now reads `$?` alongside `$LASTEXITCODE`, before anything else can overwrite `$?`.
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-
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- ## [0.8.0] — 2026-08-22
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-
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- ### Added
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- - Provenance widened from 2 tiers to a 4-tier trust hierarchy: `observed` (commits, diffs, shell
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- exit codes) > `authored` (doc sections — human-written claims) > `recorded` (conversation turns —
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- verbatim discourse) > `derived` (session summaries — a model's distillation). Schema V7 backfills
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- existing databases by kind. The ranker decays each tier at its own rate (lower trust fades
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- faster); the ordering is the design claim, the exact ratios are documented judgment calls.
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- - Contradiction checking now runs automatically during `sync`: at most 3 new SLM judgments per run
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- (`contradictions.maxPerSync`; `contradictions.autoCheck: false` turns it off), gated on the
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- embedding provider already being reachable. Every judgment — either verdict — is memoized in a new
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- `contradiction_checks` table (schema V8), so a judged pair is never sent to the model again and
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- repeat syncs converge to zero model calls. Measured live against this repo's own database: 5.4s
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- for the first 10 judgments, 0.5s for the identical re-run. Still suggest-only: nothing ever writes
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- `supersedes` automatically.
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- - Standing suggestions now surface everywhere without a model in the loop: plain `nexusmem stale`
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- decorates flagged candidates from the memoized judgments (instant, offline), `nexusmem status`
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- gains a `flagged` line, and the sync summary reports new/open suggestion counts.
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- - `stale --check-contradictions` reuses each candidate's stored embedding instead of re-embedding
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- it, and stops after two consecutive null SLM replies so a down provider costs at most two timeouts
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- rather than one per candidate.
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-
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- ## [0.7.0] — 2026-08-21
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-
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- ### Added
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-
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- - `nexusmem stale --check-contradictions`: for each stale candidate, finds the most similar newer
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- node (local embedding search) and asks a local SLM (Ollama, `qwen2.5:3b` by default) whether it
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- actually contradicts the older one, instead of only surfacing by age. Suggest-only — nothing is
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- written, same as plain `stale`. Live-dogfooded against this repo's own real database and Ollama
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- instance; found and fixed a real gap along the way (below) before the feature surfaced anything
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- useful.
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- - Import graph: bare Python imports with no leading dot (`import foo`, `from foo import bar`)
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- now resolve to a same-directory sibling file too, alongside the existing relative-dot support.
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- Found dogfooding two real local projects: neither used a single PEP 328 relative import, both
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- relied entirely on this flat-script style. Guarded by a static list of stdlib module names so a
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- bare `import os`/`import queue`/etc. is never mistaken for a same-named local file.
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-
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- ### Fixed
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-
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- - Import graph: a Java wildcard import (`import a.b.*;`) no longer merges files from two
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- unrelated packages that happen to share a directory-name suffix (e.g. two Gradle/Maven modules
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- each with their own `.../foo`) — it now refuses to guess, same as the single-class-import case.
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- - `stale --check-contradictions`'s neighbor search now looks past same-timestamp sibling nodes
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- (e.g. the many chunks one long conversation gets split into) to reach genuinely newer content.
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- Found live-dogfooding against this repo's own database: the first real candidate's closest 15
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- neighbors were all same-conversation siblings sharing its exact timestamp, so the original
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- 5-neighbor default silently found zero suggestions for every candidate, regardless of what the
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- SLM would have said.
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-
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- ## [0.6.0] — 2026-08-20
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- ### Added
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-
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- - Ranker: `inferred` nodes (summaries, doc snapshots) now decay twice as fast as `observed` ones
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- (git commits, diffs, shell commands) for retrieval purposes. A judgment call, not a measured
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- optimum — see `INFERRED_HALF_LIFE_RATIO` in `src/retrieval/rank.ts`.
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- - `nexusmem stale`: lists aging `inferred` nodes nothing has superseded yet, as candidates for
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- `mark-stale`. A heuristic on age and provenance, not real contradiction detection — writes nothing.
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- - `nexusmem status` now surfaces an `aging` line with the stale-candidate count when any exist.
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- - Import graph: Python relative imports (`from .foo import bar`, `from . import x`) now produce
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- file edges too, alongside the existing JS/TS support. Absolute Python imports are still skipped —
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- same "missed edge over wrong edge" reasoning as JS/TS's bare-specifier skip.
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- - Import graph: Go internal imports (resolved against `go.mod`'s module path, one edge per
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- non-test file in the imported package) and Rust `mod foo;` declarations (2018+ edition module
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- layout) now produce file edges too. External Go imports and Rust `use` paths are out of scope for
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- the same reason.
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- - Import graph: Java imports (`import a.b.C;` / `import a.b.*;`, resolved by unambiguous suffix
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- match against the tracked source tree) and `__DIR__`-anchored PHP `require`/`include` now produce
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- file edges too — all six of `nexusmem scan-structure`'s tracked languages. `import static`, PHP's
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- autoloaded `use Namespace\Class;`, and any unanchored PHP include are out of scope for the same
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- "missed edge over wrong edge" reason as everywhere else in the import graph.
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-
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- ## [0.5.4] — 2026-08-20
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-
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- ### Added
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-
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- - `nexusmem status --share`: a plain-text, no-color summary (node count, failure→fix chains
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- linked, days of history) meant to be pasted somewhere, not scraped by a script.
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-
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- ## [0.5.3] — 2026-08-19
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-
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- No functional changes to the CLI, MCP server, or published package -- a test-coverage and
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- CI-reliability pass.
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-
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- ### Verified
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-
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- - **Closed 15 genuine test-coverage gaps**, found by grepping for real call sites in `tests/`
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- rather than guessing from filenames (an Explore agent found the first 7; the rest by hand the
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- same way). All 7 `scan-*` CLI subcommands (`scan-git`/`diff`/`shell`/`docs`/`conversation`/
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- `structure`/`session`) had zero coverage -- `tests/cli-scan.test.ts`'s name was misleading, it
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- only pinned `cli/format.ts`'s shared helpers. Also closed: `runStatus`'s report body beyond the
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- stale-identity branch, `runQuery`, `forget --import`'s dry-run preview path, `shell/detect.ts`'s
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- zsh scraping and hook-log `repoRoot` scoping, `openAllProjectSources`'s `unreadable` branch,
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- `cli/context.ts`'s `loadContext`, `store/fts.ts`'s `toStrictMatchQuery`/`significantTokens`,
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- `list_recent_memory`'s MCP `structuredContent` at the protocol level, `structure/resolve.ts`'s
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- `.mjs`/`.cjs` rewrite, `docs/read.ts`'s `include` option, and `git/log.ts`'s `buildLogArgs`. Test
257
- suite: 559 → 592 tests.
258
-
259
- ### Fixed
260
-
261
- - **A real test-isolation bug: a test could scrape a developer's actual shell history into a
262
- throwaway test database.** `tests/setup.ts` isolated `NEXUSMEM_HOME` (so a test `sync()` can't
263
- pollute the real `~/.nexusmem/projects.json` registry -- fixed 2026-08-15 for the same reason)
264
- but never isolated `APPDATA`/`HISTFILE_BASH`/`HISTFILE`, so any test running a real `sync()`
265
- scraped whatever PSReadLine/bash/zsh history actually exists on the machine running the suite.
266
- Observed directly: a new test here ingested 300 real `shell_command` nodes off this machine's
267
- own history before the fix. Now isolated the same way as the registry.
268
- - **CI failed (deterministically, all 4 jobs) on 4 assertions that assumed adjacent words in
269
- colorized CLI output stay contiguous.** GitHub Actions' runners don't have `NO_COLOR` set the
270
- way this project's local dev shells apparently do, so `picocolors` emits real ANSI codes there --
271
- a regex like `/git\s+last run/` breaks when an escape sequence sits between a padded label and a
272
- separately-colored value. `tests/forget.test.ts` already carries a `stripAnsi()` helper for
273
- exactly this trap; applied the same fix to the 4 newly-added test files that had it. Verified by
274
- reproducing the CI failure locally with `FORCE_COLOR=1` before the fix, then re-running the full
275
- 592-test suite under `FORCE_COLOR=1` after, to check for any other latent instance.
276
-
277
- ## [0.5.2] — 2026-08-18
278
-
279
- ### Added
280
-
281
- - **`nexusmem mark-stale <nodeId> --supersedes <newNodeId>`, `provenance`, and manual staleness
282
- tracking.** A pre-Show-HN pass answering a public critique that this couldn't tell an observed
283
- fact from a guess, or retire a stale conclusion. Every node now carries `provenance`
284
- (`observed`/`inferred`, set per-collector: git commits, diffs, and shell commands are `observed`;
285
- conversation turns, session summaries, and doc sections are `inferred`) and an optional
286
- `supersedes` link. `mark-stale` writes that link; the ranker applies a flat down-weight to whatever
287
- it points at, but never deletes it -- the old node stays queryable, just usually loses to its
288
- replacement. `provenance` is shown as a `[observed]`/`[inferred]` tag on every query result (CLI
289
- and MCP `search_memory` share the same renderer). This is deliberately not automatic: nothing
290
- detects staleness on its own, a human or agent still has to notice the contradiction and run the
291
- command. See the README's new "Manual staleness & provenance" section.
292
-
293
- ### Verified
294
-
295
- - **`forget` does not leak through vector search.** Checked whether `MemoryStore.forget` excludes a
296
- tombstoned node from `sqlite-vec` results only via a query-time filter (which every vector query
297
- path would need to apply consistently) or by deleting the embedding row outright. It already does
298
- the latter -- `dropEmbedding` runs before the node row is deleted, in the same transaction, on both
299
- query paths (`runHybridQuery` and `runCrossProjectQuery`, which both call the same
300
- `MemoryStore.vectorSearch`). No fix was needed; added a regression test
301
- (`tests/vector.test.ts`) that forgets an embedded node and asserts both `vectorSearch` returns
302
- nothing and the `nodes_vec` row count drops to zero, so this can't silently regress.
303
- - **`forget` survives `sync --rebuild`.** This was the point of v0.5.0 and was already covered
304
- end-to-end in `tests/forget.test.ts`. Added a lower-level `tests/store.test.ts` case pinning the
305
- exact mechanism: `clearProject` (what `--rebuild` calls before re-ingesting) only touches
306
- `nodes`/`nodes_vec`/`sync_state`, never `deny_list`, so a re-ingest of the same content is denied
307
- again rather than resurrected.
308
-
309
- ## [0.5.1] — 2026-08-17
310
-
311
- ### Added
312
-
313
- - **`nexusmem forget --export <path>` / `forget --import <path>`: carry a deny-list across a clone or
314
- restore.** `.nexusmem/` is gitignored by design, so `deny_list` never traveled with `git clone`/
315
- `git push` — confirmed live 2026-08-17 that a fresh clone of the exact same repo resurrected a value
316
- already forgotten elsewhere, with zero deny-list protection, because git history (what a fresh `sync`
317
- re-derives from) is fully portable while the deny-list that would have blocked it was not. `--export`
318
- writes the active entries to a plaintext JSON file (loudly warned as exactly as sensitive as the
319
- values it holds — never meant for git, moved through whatever secure channel the user already
320
- trusts); `--import` re-applies each new entry through `forget` itself, so an imported value is
321
- deleted from the new checkout's nodes too, not just blocked going forward. Same dry-run-by-default /
322
- `--yes` convention as the rest of `forget`. See `docs/forget-mechanism.md`.
323
-
324
- ## [0.5.0] — 2026-08-17
325
-
326
- ### Added
327
-
328
- - **`nexusmem forget <value>`: permanent, value-keyed deletion.** The finer-grained complement to
329
- `sync --prune-source` (which only deletes at the whole-collector-source granularity): forgets one
330
- exact string or `--regex` pattern, deleting every node it currently matches *and* writing a
331
- standing deny-list entry so the value can never be re-ingested — closing the one gap an external
332
- source-level review flagged as its most serious finding: the append-only shell-hook log (and a
333
- full transcript re-read) are untouched by any prune, so `sync --rebuild` used to resurrect exactly
334
- what had just been deleted. Every removal leaves a hash-only tombstone (never the forgotten
335
- content itself — `body`/`title` are stored as sha256 only) and the whole operation writes one
336
- `mutation_audit` row, whether or not anything matched. Dry-run by default, matching
337
- `--prune-source`'s convention exactly; `--yes` confirms; `--list` shows active entries. Permanent
338
- in v0 — no `--remove`, matching the existing irreversible framing of `--prune-source`/`--rebuild`.
339
- See `docs/forget-mechanism.md`.
340
-
341
- ## [0.4.0] — 2026-08-16
342
-
343
- ### Added
344
-
345
- - **`nexusmem status` now warns when prior project identities still hold nodes.** A renamed git
346
- remote can leave stale data under the old identity; status reports both the identity and node
347
- counts and points to `sync --prune-source <name>` instead of leaving that data discoverable only
348
- through a raw SQLite query.
349
- - **`docs/competitor-comparison.md`: an honest, source-level comparison against `riponcm/projectmem`** (705
350
- GitHub stars vs. this project's 8, at time of writing) — a real, working competitor read in full (not
351
- judged from its README), covering where the two tools' failure-tracking, import-graph coverage, and
352
- token-savings claims genuinely differ. Cites a freshly re-run benchmark (`npm run bench`, not a stale
353
- table) alongside projectmem's own `pjm score` constants, read directly from its source. Linked from the
354
- README's `## What it costs you` section and a short website section near the existing stats.
355
- - **`nexusmem hook git install|remove|status`: a real git pre-commit hook.** Installs a marked block into
356
- `.git/hooks/pre-commit` that runs `nexusmem precheck` (no `--strict`, so it can never block a commit on
357
- its own) before each commit — the automatic counterpart to the advisory `precheck` command. Refuses to
358
- touch a pre-existing foreign hook (husky, lint-staged, lefthook, ...) unless `--force` is passed, in which
359
- case it appends after the existing content rather than before, so the foreign hook still runs first and
360
- keeps deciding whatever it already decided. Idempotent (`nexusmem hook git install` twice is a no-op) and
361
- removable cleanly, including restoring a foreign hook to its original content if one was appended onto.
362
- Live-verified against a real scratch git repo on Windows: fresh install, a real `git commit` that
363
- triggered the hook and printed a correct precheck report, clean removal, and both the refuse-without-force
364
- and append-with-force foreign-hook paths.
365
- - **`nexusmem precheck`: proactive pre-commit warnings.** Checks staged (or `--working`, or explicit `--files`)
366
- files against project memory and warns about unresolved past failures and high recent churn *before* you
367
- commit — advisory by default (always exits 0; `--strict` turns an unresolved failure into a non-zero exit).
368
- Matches a file's own basename tokens against still-unlinked `shell_command` failures (no
369
- `resolved_by:*` link from `sync --link-failures`), reusing `filterBoilerplateTokens` from the
370
- discussion-bridge heuristic — now exported and parameterized by node kind so it can be corpus-relative
371
- against `shell_command` history instead of only `conversation_turn`/`session_summary`. Churn is scoped to
372
- `git_commit`-kind `node_files` touches only, so it doesn't double-count the identical touches `code_diff`
373
- nodes also record. Deliberately does not yet install as a real git hook (see the module comment in
374
- `src/correlate/precheck.ts` for why capture-time `git status` diffing and past-commit correlation were both
375
- rejected) — that's a follow-up once this signal has been dogfooded.
376
- - **JS/TS import-graph edges.** `nexusmem scan-structure` previews (and `sync` now ingests) file→file
377
- import relationships across a project's tracked `.ts`/`.tsx`/`.js`/`.jsx` files — a dependency-free
378
- regex extractor (`src/structure/extract.ts`) resolves relative `import`/`export ... from`/`require`/
379
- dynamic-`import` specifiers against the tracked-path set, correctly rewriting the common TS/ESM
380
- `./foo.js` specifier back to its real `foo.ts` source. Stored in a new `file_edges` table (schema
381
- v4), replaced wholesale on every sync since edges describe current tree state, not history. Surfaced
382
- as a `structure` line in `nexusmem status`; not yet wired into `query` ranking or exposed as an MCP
383
- tool — that's a follow-on design question, not this pass's job.
384
-
385
- ## [0.3.3] — 2026-08-16
386
-
387
- ### Added
388
-
389
- - **`nexusmem status` now shows failure→fix chain counts** — `N/M failure(s) resolved (X retry, Y
390
- discussion)`, plus a hint to run `sync --link-failures` when failures remain unresolved. The
391
- chain feature is this project's most distinctive capability, but was previously invisible to
392
- anyone who didn't already know to query `node_links` directly. Backed by the new
393
- `getChainStats` in `src/correlate/failure-fix.ts`, which dedupes failures resolved by both
394
- heuristics rather than double-counting them.
395
-
396
- ### Fixed
397
-
398
- - **Discussion-bridge heuristic (`sync --link-failures`): corpus-relative boilerplate tokens no
399
- longer produce false-positive failure→fix links.** Re-dogfooded at larger scale against a second
400
- real project's history: a command made entirely of words that saturate a project's own corpus
401
- (e.g. this repo's own name/verbs) could AND-match an unrelated turn that just happened to mention
402
- the same words, and bm25 score alone could not separate that from a true positive (measured: the
403
- false positive scored *stronger* than two real true positives). `filterBoilerplateTokens` in
404
- `src/correlate/failure-fix.ts` drops any token that appears in over 20% of a project's own
405
- `conversation_turn`/`session_summary` history before building the match query — measured against
406
- real data, not guessed — and skips the discussion-match attempt entirely (rather than falling back
407
- unfiltered) when every token turns out to be boilerplate, since a missed link is preferred over a
408
- false one for this heuristic. Below 10 discussable nodes the filter is skipped, since frequency
409
- isn't a meaningful signal yet on a young project.
410
-
411
- ## [0.3.2] — 2026-08-16
412
-
413
- ### Added
414
-
415
- - **`mcpName` field in `package.json`**, required by the official MCP registry
416
- (registry.modelcontextprotocol.io) to verify that whoever publishes `server.json` under
417
- `io.github.yaminbkk/nexusmem` also controls the `nexusmem` npm package itself — the registry
418
- rejects a publish attempt otherwise. No behavior change for CLI/MCP users; this is purely a
419
- registry-ownership proof.
420
- - **`list_recent_memory` MCP tool** — chronological listing of a repository's most recently
421
- remembered nodes (git commits, diffs, shell commands, docs, conversation, session summaries),
422
- newest first. Distinct from `search_memory`: no query, just "what has this project's memory
423
- recorded lately" — built for the VS Code extension's sidebar view, which lists rather than
424
- searches. Backed by `MemoryStore.listRecentNodes`, reusing the existing `idx_nodes_project_ts`
425
- index.
426
- - **`sync --prune-source <name>` and `sync --prune-stale-shell`** — drop one source's nodes without a
427
- full `--rebuild`, which loses history that can't be re-read from disk (the shell tail window, older
428
- conversation turns). `--prune-stale-shell` is a shortcut for the three dead pre-hook shell-scrape
429
- sources (`shell:pwsh`, `shell:bash`, `shell:zsh`) at once. Dry-run by default — prints the matching
430
- count and does nothing until `--yes` is also given, since this is an irreversible full wipe of the
431
- named source(s), unlike `--rebuild`'s no-prompt full-project reset. Also sweeps any prior project
432
- identity of this same repo (the id a renamed git remote leaves behind after
433
- `fix(store): reconcile memory stranded by a changed git remote URL` migrates what it can) — a
434
- live-id-only prune could not reach nodes reconciliation deliberately left in place. Exposed on both
435
- the CLI and the MCP `sync_project` tool.
436
- - **Discussion-heuristic failure→fix chains now surface**, tightened to an AND-joined significant-
437
- token match instead of the original OR match. Re-verified against this repo's own real database:
438
- 5/5 discussion links correct (was ~half wrong when it shipped unsurfaced in 0.3.0). Chains now
439
- follow across projects in `query --all-projects` too.
440
-
441
- ### Fixed
442
-
443
- - **`sync_project`'s summary no longer contains raw ANSI color codes on Windows.** `runInit`/`runSync`
444
- format their output with picocolors for terminal display, and picocolors treats `platform ===
445
- 'win32'` as sufficient evidence of color support on its own, without checking `isTTY` — correct for
446
- a real terminal, wrong for the MCP JSON-RPC channel, which is piped on every platform. Found live: a
447
- real MCP client (the VS Code extension's Output channel) rendered the raw escape codes as literal
448
- text instead of color. Stripped at the MCP boundary in `syncProject`, leaving the CLI's own terminal
449
- output untouched.
450
-
451
- ## [0.3.1] — 2026-08-15
452
-
453
- ### Added
454
-
455
- - **`scripts/benchmark.ts` (`npm run bench`) — a reproducible end-to-end token-saving benchmark.**
456
- Compares `packed.tokensUsed` against two baselines (full-file-read and `git log -p`) for the same
457
- files a query's packed nodes touch, over a query set derived mechanically from the corpus itself
458
- rather than hand-picked. Used to measure the README's `## What it costs you` numbers against both
459
- this repo (62 commits) and a 9,567-commit external corpus (`vitejs/vite`) — see README for the
460
- numbers and their methodology caveats.
461
-
462
- ### Fixed
463
-
464
- - **A generic 2-3 letter local model title, "id" as a search token, and one node's chunks flooding a
465
- result set — three ranking/retrieval edge cases found by dogfooding, each verified with a red test
466
- before the fix.**
467
- - Session-summary titles: the local model sometimes wrote a role-framing line ("Role: Lead Systems
468
- Engineer...") instead of a summary, in Thai and English alike. The existing generic-title filter
469
- didn't catch either language, since it only matched English words like "summary"/"update".
470
- - Search: the token `id` alone was prefix-matching unrelated shell commands like
471
- `winget install --id ...`, because every query token was OR-ed with no floor and no stopword
472
- list, and bm25 gives a rare-but-generic token an inflated score purely from scarcity.
473
- - Packing: `conversation_turn` and `doc_section` both chunk one reply or file into several nodes
474
- sharing the same timestamp; up to 2 may now appear in one packed result, down from unlimited.
475
-
476
- - **A repo's memory could silently split in two if its git remote URL ever changed** (a GitHub
477
- account rename, an org transfer). Project identity is derived from the remote URL on purpose — so
478
- the same repo re-cloned to a new path or machine keeps sharing memory — but a changed URL on the
479
- *same* path minted a new id and stranded every node synced under the old one, invisible to
480
- `status`/`query`/MCP from then on. `sync` now detects a prior id already recorded in the repo's own
481
- database and reconciles it forward: recomputable node kinds (session summaries, hook-sourced shell
482
- history) are migrated under their correct new id and deduplicated against anything already synced;
483
- conversation turns, whose identity can't be recomputed, are reassigned in place. Git commits,
484
- diffs, and doc sections are left alone — a normal sync already re-derives them completely, so
485
- there is nothing to migrate.
486
-
487
- ## [0.3.0] — 2026-08-13
488
-
489
- **Upgrade note.** The first `sync` after upgrading drops every stored embedding and rebuilds it.
490
- This is not optional and it is not a bug: embeddings now come from Ollama's `/api/embed`, which
491
- returns L2-normalised vectors, while the previous `/api/embeddings` did not — measured norms of 1.0
492
- and 20.7 for the same input. `nodes_vec` ranks by Euclidean distance and records no per-row
493
- provenance, so a corpus holding both would separate by scale rather than by meaning. `sync` says
494
- what it dropped, nodes are untouched, and BM25 keeps working while the rebuild runs. On this repo
495
- the rebuild was 833 nodes in one pass, inside a 9-second sync.
496
-
497
- ### Added
498
-
499
- - **Session summaries via a local model** (`sources.session`, opt-in, off by default). Each
500
- finished session becomes one distilled `session_summary` node — decisions and their reasons —
501
- alongside the raw exchanges. Runs a local Ollama chat model (`qwen2.5:3b` by default); nothing is
502
- downloaded automatically and no transcript leaves the machine. New `scan-session` command, with
503
- `--dry-run` to print the exact prompt a session would produce without calling the model.
504
- Bounded three ways: a session must be quiet for `settleMinutes` (default 30) before it is
505
- eligible, the prompt is hashed so an unchanged session never reaches the model again, and
506
- `maxSessions` caps how many are summarized per sync. Every exchange is redacted before the model
507
- sees it, and the model's own output is redacted again before it is stored.
508
- - **`sync --embed-limit <n>`** to cap the embedding pass, for when draining the whole backlog is not
509
- wanted.
510
-
511
- ### Changed
512
-
513
- - **The embedding pass drains the backlog in one `sync`** instead of stopping after 200 nodes, and
514
- sends texts to Ollama in batches of 32 — measured at 4.21x the throughput of one call per node
515
- (20.3ms → 4.8ms per node, over 96 real nodes from this repo). Leaving it uncapped is safe because
516
- paging walks rowids monotonically, so a node the provider failed on is passed over rather than
517
- retried forever, and because three consecutive dead requests end the pass: an Ollama that is not
518
- running now costs three requests rather than one timeout per node.
519
- - **Embeddings carry a provider identity.** Changing the embedding model, or upgrading from a
520
- release that recorded no identity, drops the vectors and re-embeds rather than ranking across a
521
- mixture.
522
- - **Ranking priors now share one budget instead of getting one each.** `signal` and `recency` are
523
- query-independent, and each was separately capped at overturning a 2× relevance gap. The score
524
- multiplies them, so together they could overturn 4× — which is not a corner case but a description
525
- of every commit made during an active working day, fresh and high-signal at once. A query about the
526
- PowerShell hook returned two unrelated same-day `fix:` commits at ranks 3 and 4 while the section
527
- that answered it sat at rank 6. The 2× budget is now the bound on the priors *jointly*, split
528
- between them (`signal^0.215 × recency^0.288`, down from `^0.431` and `^0.576`), and a third prior
529
- would re-divide the same budget rather than enlarge it. Measured on four real queries against this
530
- repository's memory: the answering section rose in three of them — the rationale for "why BM25
531
- before vector search" went from rank 4 to rank 1 — and no query's correct top hit was displaced.
532
-
533
- ### Known limitation
534
-
535
- - Session-summary *titles* depend on the model following a fixed output format, and a 3B model often
536
- does not. Measured over 14 real sessions, roughly a third came back usable; the rest were
537
- conversational preambles, stray bullets, or a bare "Summary of the Session". Those are rejected
538
- and the title falls back to the first line of the question that opened the session — always
539
- specific, not always elegant. Compliance was worst on long sessions and on transcripts not in
540
- English. `sources.session.model` takes a larger model if it matters.
541
-
542
- ## [0.2.0] — 2026-08-12
543
-
544
- **Upgrade note.** Both new sources are on by default, so the first `sync` after upgrading an
545
- existing project ingests the patches of its 200 most recent commits and starts recording the
546
- repository in `~/.nexusmem/projects.json`. Set `sources.diff.enabled` to `false` in
547
- `.nexusmem/config.json` if you would rather not, and `NEXUSMEM_HOME` relocates the user-scoped
548
- directory. Nothing existing is rewritten or lost.
549
-
550
- ### Added
551
-
552
- - **Diff-level nodes.** Commit patches are now indexed, one node per changed file, so a question
553
- about *what the change looked like* reaches the lines themselves rather than the commit message
554
- and a `+41/-6` summary. New `code_diff` kind, `diff` source, `scan-diff` preview command, and a
555
- `sources.diff` config block. Read by a second `git log --patch` walk with its own cursor: folding
556
- it into the existing `--numstat` walk would put patch text and numstat rows in one field, where a
557
- diff line reading `-1\t2\tfoo` is indistinguishable from a real file entry.
558
- Bounded on purpose — 200 commits on a first sync, 20 files per commit, no merges (their patch
559
- exists only in a combined format this parser does not read), and binaries, lockfiles and build
560
- output skipped. Patches are redacted with the shape-matching rules only; the key/value rule that
561
- serves prose would rewrite `const apiKey = process.env.SERVICE_API_KEY` into a redaction marker.
562
- - **Cross-project recall.** `query --all-projects` (and `search_memory`'s `allProjects`) searches
563
- every repository NexusMem has been run in on this machine, tagging each result with the repository
564
- it came from. Databases stay per-repository — a shared global store was rejected for giving up the
565
- property that deleting one repo's `.nexusmem/` removes that repo's memory and nothing else — so a
566
- plain index at `~/.nexusmem/projects.json`, written by `init` and refreshed by `sync`, is what
567
- makes the others findable. New `projects` command lists it; `--prune` forgets entries whose
568
- database is gone. A stale or corrupt registry degrades the query, never fails it.
569
- Ranking fuses each project's list by rank (RRF) instead of comparing raw BM25 costs, which are
570
- computed against their own corpus and are not comparable across databases. The bias this leaves —
571
- every project's rank-1 hit is worth the same, so recall favours breadth — is documented rather
572
- than hidden.
573
- - **Query-aware diff excerpts.** A packed summary is ~320 characters and a patch is thousands, so
574
- the packer now picks the hunk whose tokens match the query and starts the excerpt at the changed
575
- line. Found by dogfooding: "what flags are passed to every git invocation" retrieved the right
576
- file and then spent the whole summary on a class definition seventy lines above the answer.
577
- Matching splits identifiers on case and underscore boundaries, because `\bretry\b` does not match
578
- `RETRY_DELAYS_MS` and a natural-language question otherwise never meets the code it is about.
579
- - `CHANGELOG.md` now ships inside the npm tarball. npm's always-included list covers `package.json`,
580
- `README` and `LICENSE` but not the changelog, so it previously reached GitHub readers only.
581
-
582
- ### Internal
583
-
584
- - The test suite no longer writes to the developer's real `~/.nexusmem`. `sync` records the
585
- repository it ingested in the project registry, and the suite syncs temporary repositories in
586
- several places, so a green run left seven dead entries behind — found by running `nexusmem
587
- projects` after the fact, not by any test. `tests/setup.ts` now points `NEXUSMEM_HOME` at a
588
- throwaway directory for the whole suite, and one test fails if that guard is ever removed.
589
- - `npm run smoke` drives the *packaged* artifact: build, pack, install into a throwaway directory,
590
- then run the installed CLI, an end-to-end ingest/query against a fixture repository, and an
591
- `initialize` handshake over real stdio. It also audits the manifest `npm publish` would send,
592
- which is a different artifact from the tarball. Both defects that ever reached npm users passed a
593
- green unit suite first; each is now pinned by a check verified to fail when the defect is
594
- reintroduced. Runs in CI on Linux and Windows as its own job.
595
-
596
- ## [0.1.2] — 2026-08-10
597
-
598
- ### Fixed
599
-
600
- - `nexusmem --version` printed `0.1.0` on 0.1.1. The version string in `src/cli/index.ts` was a
601
- literal separate from `package.json`, and the 0.1.1 bump only touched the latter. `src/mcp/server.ts`
602
- had the same problem in its `McpServer` constructor, so an MCP client's `initialize` handshake
603
- would have reported the same stale version. Both now read the real version through
604
- `readOwnVersion()` in `src/core/version.ts`, which resolves `package.json` via `import.meta.url`.
605
- Found by running the published package end to end rather than trusting `npm publish --dry-run`
606
- and the registry API, neither of which executes a `--version` flag.
607
-
608
- The ingestion and retrieval pipeline was never affected — only the two places that report a version
609
- independently of running a command.
610
-
611
- ## [0.1.1] — 2026-08-10
612
-
613
- ### Changed
614
-
615
- - README rewritten for someone deciding whether to read the source: what it does, how retrieval
616
- scores, what it costs, and where it breaks. `README.md` ships inside the package, so this is a
617
- real change to what npm delivers — but no code changed between 0.1.0 and 0.1.1.
618
- - Documented the ranking flaw the tool found in itself, and the fact that the conversation source
619
- in the sample `status` output is opt-in rather than default.
620
- - Dropped `&&` from the quickstart, which Windows PowerShell 5.1 cannot parse.
621
-
622
- ## [0.1.0] — 2026-08-10
623
-
624
- First public release.
625
-
626
- ### Added
627
-
628
- - **Collectors.** Git history (commit metadata and diff stats, not diff bodies), shell commands with
629
- exit codes via an opt-in PowerShell hook, tracked markdown docs via `git ls-files -- '*.md'`, and
630
- opt-in assistant transcripts.
631
- - **Hybrid retrieval.** SQLite FTS5 BM25 and `sqlite-vec` KNN over 768-dim embeddings, fused with
632
- reciprocal rank fusion, then ranked by relevance against signal and recency priors and packed into
633
- an explicit token budget.
634
- - **MCP server** over stdio (`nexusmem mcp`) exposing `search_memory`, `sync_project` and
635
- `get_status`, for Claude Desktop, Cursor, Windsurf and other MCP clients.
636
- - **CLI**: `init`, `sync`, `query`, `status`, `mcp`, and `hook install|remove|status`, plus four
637
- dry-run previews — `scan-git`, `scan-shell`, `scan-docs`, `scan-conversation` — that write nothing
638
- and print the nodes ingestion would create with their signal scores.
639
- - Content-addressed node ids (`sha256(projectId + kind + naturalKey)`), so `sync` is idempotent and
640
- two clones of one repository share a memory namespace.
641
- - Everything stays on the machine: one SQLite database in WAL mode under `<repo>/.nexusmem/`.
642
-
643
- ### Notes
644
-
645
- - Requires Node **>= 22**. `better-sqlite3` 12.11.1 publishes no prebuilt binary for Node 20 — its
646
- prebuilds start at ABI 127 — so a lower floor would have been a promise the package could not keep.
647
- Do not lower it without checking upstream prebuilds first.
648
- - Not done at this release: diff bodies are not indexed, queries are scoped to a single project,
649
- there is no local-model summarization pass, and the conversation collector has never been audited
650
- for the stale-node bug that was found and fixed in the docs collector.
651
-
652
- [Unreleased]: https://github.com/yaminbkk/NexusMem/compare/v0.10.1...HEAD
653
- [0.10.1]: https://github.com/yaminbkk/NexusMem/compare/v0.10.0...v0.10.1
654
- [0.10.0]: https://github.com/yaminbkk/NexusMem/compare/v0.9.1...v0.10.0
655
- [0.9.1]: https://github.com/yaminbkk/NexusMem/compare/v0.9.0...v0.9.1
656
- [0.9.0]: https://github.com/yaminbkk/NexusMem/compare/v0.8.0...v0.9.0
657
- [0.8.0]: https://github.com/yaminbkk/NexusMem/compare/v0.7.0...v0.8.0
658
- [0.7.0]: https://github.com/yaminbkk/NexusMem/compare/v0.6.0...v0.7.0
659
- [0.6.0]: https://github.com/yaminbkk/NexusMem/compare/v0.5.4...v0.6.0
660
- [0.5.4]: https://github.com/yaminbkk/NexusMem/compare/v0.5.3...v0.5.4
661
- [0.5.3]: https://github.com/yaminbkk/NexusMem/compare/v0.5.2...v0.5.3
662
- [0.5.2]: https://github.com/yaminbkk/NexusMem/compare/v0.5.1...v0.5.2
663
- [0.5.1]: https://github.com/yaminbkk/NexusMem/compare/v0.5.0...v0.5.1
664
- [0.5.0]: https://github.com/yaminbkk/NexusMem/compare/v0.4.0...v0.5.0
665
- [0.4.0]: https://github.com/yaminbkk/NexusMem/compare/v0.3.3...v0.4.0
666
- [0.3.3]: https://github.com/yaminbkk/NexusMem/compare/v0.3.2...v0.3.3
667
- [0.3.2]: https://github.com/yaminbkk/NexusMem/compare/v0.3.1...v0.3.2
668
- [0.3.1]: https://github.com/yaminbkk/NexusMem/compare/v0.3.0...v0.3.1
669
- [0.3.0]: https://github.com/yaminbkk/NexusMem/compare/v0.2.0...v0.3.0
670
- [0.2.0]: https://github.com/yaminbkk/NexusMem/compare/v0.1.2...v0.2.0
671
- [0.1.2]: https://github.com/yaminbkk/NexusMem/compare/v0.1.1...v0.1.2
672
- [0.1.1]: https://github.com/yaminbkk/NexusMem/compare/v0.1.0...v0.1.1
673
- [0.1.0]: https://github.com/yaminbkk/NexusMem/releases/tag/v0.1.0
144
+
145
+ ## [0.10.3] — 2026-08-31
146
+
147
+ ### Added
148
+
149
+ - `hook git-post install|remove|status`: an opt-in git post-commit hook that runs a full
150
+ `nexusmem sync` (including embedding) in the background after every commit. Detached (`nohup ... &`),
151
+ so it never makes `git commit` itself wait; output goes to `.nexusmem/post-commit-sync.log` instead
152
+ of the terminal. `sync` gained a matching `--auto` flag (used only by this hook) that skips instead
153
+ of running if another `--auto` sync already holds an advisory lock over the project's workspace dir —
154
+ a burst of commits (e.g. a rebase) coalesces into one sync instead of piling up. The log file is
155
+ reset once it passes 2000 lines so it can't grow forever, and a skipped/coalesced run is always
156
+ reported there, even though the hook always passes `--quiet`.
157
+
158
+ ### Known limitations
159
+
160
+ - A burst of commits fast enough to launch genuinely overlapping `sync --auto` processes can
161
+ interleave two runs' text mid-line in `.nexusmem/post-commit-sync.log` — the advisory lock
162
+ serializes the actual database writes (never at risk), not who gets to write to this diagnostic
163
+ log file. Cosmetic only; not planned to be fixed unless it turns out to matter in practice.
164
+
165
+ ## [0.10.2] — 2026-08-30
166
+
167
+ ### Security
168
+
169
+ - `shell_command` nodes never ran through the same secret-redaction pass `conversation_turn` and
170
+ `code_diff` nodes already get: a command like `export API_KEY=...` landed verbatim in `title`/`body`,
171
+ which is exactly what the FTS index and vector embeddings are built from — a secret typed at a
172
+ prompt could resurface later through `search_memory`/`nexusmem query`. Fixed by running `redact()`
173
+ over the command before it reaches those fields. `meta.command` is kept raw on purpose: project-id
174
+ reconciliation and failure/fix correlation both hash or exact-match against the real command text,
175
+ and redacting that copy too would have silently orphaned nodes on a project-id migration.
176
+
177
+ ## [0.10.1] — 2026-08-30
178
+
179
+ ### Added
180
+
181
+ - `nodes.retrieved_count`/`nodes.last_retrieved_at` (schema V12): retrieval outcomes are now recorded
182
+ instead of silently discarded. Bumped once per completed `nexusmem query`/MCP `search_memory` call,
183
+ for every node actually packed into the returned context (both CLI and MCP share one pipeline, so
184
+ both are covered from a single call site). Not yet folded into `rank.ts`'s score formula — every
185
+ existing ranking factor was tuned against real dogfooded queries and validated with `npm run eval`
186
+ before being trusted, and a new factor needs the same treatment. This release is the instrumentation
187
+ half only; confirmed eval-neutral (MRR 0.943 / Recall@5 0.964, unchanged).
188
+
189
+ ### Fixed
190
+
191
+ - `nexusmem precheck`'s "What already failed here" warning implied the failure was located in the
192
+ flagged file, but the match is against basename word-tokens (`tokensForFile`) — a failing `npm run
193
+ precheck` flagged every file whose name contained that word, not just the one actually responsible.
194
+ Reworded to state what's actually true ("commands naming this file failed").
195
+ - The high-churn warning in `nexusmem precheck` was rendered as a `WARN`, the same severity as the
196
+ dogfooded failure-correlation warning, despite `HIGH_CHURN_THRESHOLD` being an admitted, untuned
197
+ guess. Demoted to a lower-severity `note`, explicitly labeled as an untuned heuristic, so it no
198
+ longer reads as equally trustworthy.
199
+
200
+ ## [0.10.0] — 2026-08-29
201
+
202
+ ### Added
203
+
204
+ - New opt-in `github` source: `sources.github.enabled`, `nexusmem scan-github`, `sync --github`.
205
+ Reads issue/PR threads (title, body, comments) from this repo's github.com remote via the `gh`
206
+ CLI, one `github_thread` node per thread. First source with a real external dependency (needs `gh`
207
+ installed and authenticated) rather than reading only what's already on disk; a missing remote or
208
+ an unreachable `gh` is a silent no-op, matching how an unreachable Ollama degrades elsewhere.
209
+
210
+ ## [0.9.1] — 2026-08-29
211
+
212
+ Three ranking/retrieval correctness fixes, found and validated against a new 28-case retrieval-quality
213
+ eval harness (`npm run eval`, dev-only, not part of the published package).
214
+
215
+ ### Fixed
216
+
217
+ - `nodes_vec` (vector search) over-fetched `k` globally, then filtered by `project_id` after the join —
218
+ a heuristic, not a guarantee. A sparse project sharing `memory.db` with a much larger one could have
219
+ every true nearest neighbour fall outside the over-fetch window and get silently dropped (reproduced:
220
+ 495 rows in one project + 5 in another, global `k=50` surfaced 0 of the 5). Schema V11 gives `nodes_vec`
221
+ a `PARTITION KEY` on `project_id` (`sqlite-vec` 0.1.9+), pushing the equality filter into the k-NN
222
+ search itself so cross-project exactness is now guaranteed, not probable. Migrates existing databases
223
+ automatically on next `sync`/`query`. `--as-of` date filtering still over-fetches — only the
224
+ `project_id` dimension was ever a correctness guarantee.
225
+ - `MAX_PRIOR_OVERTURN` (the cap on how far a recency/signal prior may overturn relevance) raised
226
+ `2 → 2.4`, the highest value that both improves eval MRR (0.924→0.943) and still passes every legacy
227
+ regression test guarding against the original same-day-fix-commits bug this constant exists to bound.
228
+ - A commit's `code_diff` siblings (one node per changed file, all sharing the same `ts`) could crowd a
229
+ packed result and bury that commit's own `git_commit` node — its answer — several ranks down. Now
230
+ capped per commit, matching the existing `conversation_turn`/`doc_section` family cap.
231
+ - `package.json`/`tsconfig.json` diffs were ranking above more relevant results when a changed file's
232
+ path happened to echo its commit's conventional-commit scope (title is weighted 10x body, so the scope
233
+ word counted twice). Down-weighted as mechanical wiring, same reasoning `TEST_PATHS` already applies to
234
+ tests. Only affects nodes ingested from here on — existing manifest/config diffs need `sync --rebuild`
235
+ to get the corrected signal retroactively.
236
+
237
+ ## [0.9.0] — 2026-08-27
238
+
239
+ Closes the three remaining mechanisms from a recurring external review (Simon Strandgaard, Agent
240
+ Memory Atlas): trust_state, bi-temporal reads, and a dismiss verb for standing suggestions. Also
241
+ fixes two real Windows-specific correctness bugs found dogfooding.
242
+
243
+ ### Added
244
+
245
+ - `nodes.trust_state` (`candidate` | `verified` | `rejected`, schema V10) and `nexusmem review
246
+ <nodeId> --verify|--reject`: a human verdict on a node, independent of the SLM contradiction
247
+ checker. `--reject` down-weights ranking (harsher than the existing supersede penalty, since a
248
+ human said no directly); `--verify` is a label only, no ranking boost. Both render as a tag in
249
+ packed context. Never deletes — same demote-not-delete rule as `mark-stale`.
250
+ - `--as-of <date>` on `nexusmem query` and the MCP `search_memory` tool: restricts both the BM25
251
+ and vector arms to nodes recorded at or before that instant via `created_at` (record time),
252
+ independent of how old the events themselves (`ts`, event time) are. Read-only — there is no
253
+ equivalent write, and nodes stay write-once.
254
+ - `nexusmem stale --dismiss`: silences a contradiction suggestion the user disagrees with, without
255
+ fabricating a `supersedes` relationship. Previously a wrong `--check-contradictions` verdict had
256
+ no way to be rejected — it re-decorated every future `stale`/`sync` run forever.
257
+ - `--prune-source`/`--prune-stale-shell` now record a `mutation_audit` row on their `--yes` path,
258
+ matching what `forget` already did. The dry-run preview stays a pure read.
259
+
260
+ ### Fixed
261
+
262
+ - `git rev-parse` failures reported as "error launching git: Access is denied." (Git for Windows'
263
+ launcher shim failing to exec `git.exe` under handle/AV contention) were treated as git's own
264
+ verdict instead of a transient spawn failure, turning a one-off environment hiccup into a hard
265
+ failure. Now retried the same as the other known transient-spawn classes.
266
+ - The PowerShell prompt hook read only `$LASTEXITCODE`, which cmdlets (`Remove-Item`, `Copy-Item`,
267
+ …) never set — every failing cmdlet was silently logged as a success, and a stale
268
+ `$LASTEXITCODE` from an earlier native command could misattribute to later successful cmdlet
269
+ runs. Now reads `$?` alongside `$LASTEXITCODE`, before anything else can overwrite `$?`.
270
+
271
+ ## [0.8.0] — 2026-08-22
272
+
273
+ ### Added
274
+
275
+ - Provenance widened from 2 tiers to a 4-tier trust hierarchy: `observed` (commits, diffs, shell
276
+ exit codes) > `authored` (doc sections — human-written claims) > `recorded` (conversation turns —
277
+ verbatim discourse) > `derived` (session summaries — a model's distillation). Schema V7 backfills
278
+ existing databases by kind. The ranker decays each tier at its own rate (lower trust fades
279
+ faster); the ordering is the design claim, the exact ratios are documented judgment calls.
280
+ - Contradiction checking now runs automatically during `sync`: at most 3 new SLM judgments per run
281
+ (`contradictions.maxPerSync`; `contradictions.autoCheck: false` turns it off), gated on the
282
+ embedding provider already being reachable. Every judgment — either verdict — is memoized in a new
283
+ `contradiction_checks` table (schema V8), so a judged pair is never sent to the model again and
284
+ repeat syncs converge to zero model calls. Measured live against this repo's own database: 5.4s
285
+ for the first 10 judgments, 0.5s for the identical re-run. Still suggest-only: nothing ever writes
286
+ `supersedes` automatically.
287
+ - Standing suggestions now surface everywhere without a model in the loop: plain `nexusmem stale`
288
+ decorates flagged candidates from the memoized judgments (instant, offline), `nexusmem status`
289
+ gains a `flagged` line, and the sync summary reports new/open suggestion counts.
290
+ - `stale --check-contradictions` reuses each candidate's stored embedding instead of re-embedding
291
+ it, and stops after two consecutive null SLM replies so a down provider costs at most two timeouts
292
+ rather than one per candidate.
293
+
294
+ ## [0.7.0] — 2026-08-21
295
+
296
+ ### Added
297
+
298
+ - `nexusmem stale --check-contradictions`: for each stale candidate, finds the most similar newer
299
+ node (local embedding search) and asks a local SLM (Ollama, `qwen2.5:3b` by default) whether it
300
+ actually contradicts the older one, instead of only surfacing by age. Suggest-only — nothing is
301
+ written, same as plain `stale`. Live-dogfooded against this repo's own real database and Ollama
302
+ instance; found and fixed a real gap along the way (below) before the feature surfaced anything
303
+ useful.
304
+ - Import graph: bare Python imports with no leading dot (`import foo`, `from foo import bar`)
305
+ now resolve to a same-directory sibling file too, alongside the existing relative-dot support.
306
+ Found dogfooding two real local projects: neither used a single PEP 328 relative import, both
307
+ relied entirely on this flat-script style. Guarded by a static list of stdlib module names so a
308
+ bare `import os`/`import queue`/etc. is never mistaken for a same-named local file.
309
+
310
+ ### Fixed
311
+
312
+ - Import graph: a Java wildcard import (`import a.b.*;`) no longer merges files from two
313
+ unrelated packages that happen to share a directory-name suffix (e.g. two Gradle/Maven modules
314
+ each with their own `.../foo`) — it now refuses to guess, same as the single-class-import case.
315
+ - `stale --check-contradictions`'s neighbor search now looks past same-timestamp sibling nodes
316
+ (e.g. the many chunks one long conversation gets split into) to reach genuinely newer content.
317
+ Found live-dogfooding against this repo's own database: the first real candidate's closest 15
318
+ neighbors were all same-conversation siblings sharing its exact timestamp, so the original
319
+ 5-neighbor default silently found zero suggestions for every candidate, regardless of what the
320
+ SLM would have said.
321
+
322
+ ## [0.6.0] — 2026-08-20
323
+
324
+ ### Added
325
+
326
+ - Ranker: `inferred` nodes (summaries, doc snapshots) now decay twice as fast as `observed` ones
327
+ (git commits, diffs, shell commands) for retrieval purposes. A judgment call, not a measured
328
+ optimum — see `INFERRED_HALF_LIFE_RATIO` in `src/retrieval/rank.ts`.
329
+ - `nexusmem stale`: lists aging `inferred` nodes nothing has superseded yet, as candidates for
330
+ `mark-stale`. A heuristic on age and provenance, not real contradiction detection — writes nothing.
331
+ - `nexusmem status` now surfaces an `aging` line with the stale-candidate count when any exist.
332
+ - Import graph: Python relative imports (`from .foo import bar`, `from . import x`) now produce
333
+ file edges too, alongside the existing JS/TS support. Absolute Python imports are still skipped —
334
+ same "missed edge over wrong edge" reasoning as JS/TS's bare-specifier skip.
335
+ - Import graph: Go internal imports (resolved against `go.mod`'s module path, one edge per
336
+ non-test file in the imported package) and Rust `mod foo;` declarations (2018+ edition module
337
+ layout) now produce file edges too. External Go imports and Rust `use` paths are out of scope for
338
+ the same reason.
339
+ - Import graph: Java imports (`import a.b.C;` / `import a.b.*;`, resolved by unambiguous suffix
340
+ match against the tracked source tree) and `__DIR__`-anchored PHP `require`/`include` now produce
341
+ file edges too — all six of `nexusmem scan-structure`'s tracked languages. `import static`, PHP's
342
+ autoloaded `use Namespace\Class;`, and any unanchored PHP include are out of scope for the same
343
+ "missed edge over wrong edge" reason as everywhere else in the import graph.
344
+
345
+ ## [0.5.4] — 2026-08-20
346
+
347
+ ### Added
348
+
349
+ - `nexusmem status --share`: a plain-text, no-color summary (node count, failure→fix chains
350
+ linked, days of history) meant to be pasted somewhere, not scraped by a script.
351
+
352
+ ## [0.5.3] — 2026-08-19
353
+
354
+ No functional changes to the CLI, MCP server, or published package -- a test-coverage and
355
+ CI-reliability pass.
356
+
357
+ ### Verified
358
+
359
+ - **Closed 15 genuine test-coverage gaps**, found by grepping for real call sites in `tests/`
360
+ rather than guessing from filenames (an Explore agent found the first 7; the rest by hand the
361
+ same way). All 7 `scan-*` CLI subcommands (`scan-git`/`diff`/`shell`/`docs`/`conversation`/
362
+ `structure`/`session`) had zero coverage -- `tests/cli-scan.test.ts`'s name was misleading, it
363
+ only pinned `cli/format.ts`'s shared helpers. Also closed: `runStatus`'s report body beyond the
364
+ stale-identity branch, `runQuery`, `forget --import`'s dry-run preview path, `shell/detect.ts`'s
365
+ zsh scraping and hook-log `repoRoot` scoping, `openAllProjectSources`'s `unreadable` branch,
366
+ `cli/context.ts`'s `loadContext`, `store/fts.ts`'s `toStrictMatchQuery`/`significantTokens`,
367
+ `list_recent_memory`'s MCP `structuredContent` at the protocol level, `structure/resolve.ts`'s
368
+ `.mjs`/`.cjs` rewrite, `docs/read.ts`'s `include` option, and `git/log.ts`'s `buildLogArgs`. Test
369
+ suite: 559 → 592 tests.
370
+
371
+ ### Fixed
372
+
373
+ - **A real test-isolation bug: a test could scrape a developer's actual shell history into a
374
+ throwaway test database.** `tests/setup.ts` isolated `NEXUSMEM_HOME` (so a test `sync()` can't
375
+ pollute the real `~/.nexusmem/projects.json` registry -- fixed 2026-08-15 for the same reason)
376
+ but never isolated `APPDATA`/`HISTFILE_BASH`/`HISTFILE`, so any test running a real `sync()`
377
+ scraped whatever PSReadLine/bash/zsh history actually exists on the machine running the suite.
378
+ Observed directly: a new test here ingested 300 real `shell_command` nodes off this machine's
379
+ own history before the fix. Now isolated the same way as the registry.
380
+ - **CI failed (deterministically, all 4 jobs) on 4 assertions that assumed adjacent words in
381
+ colorized CLI output stay contiguous.** GitHub Actions' runners don't have `NO_COLOR` set the
382
+ way this project's local dev shells apparently do, so `picocolors` emits real ANSI codes there --
383
+ a regex like `/git\s+last run/` breaks when an escape sequence sits between a padded label and a
384
+ separately-colored value. `tests/forget.test.ts` already carries a `stripAnsi()` helper for
385
+ exactly this trap; applied the same fix to the 4 newly-added test files that had it. Verified by
386
+ reproducing the CI failure locally with `FORCE_COLOR=1` before the fix, then re-running the full
387
+ 592-test suite under `FORCE_COLOR=1` after, to check for any other latent instance.
388
+
389
+ ## [0.5.2] — 2026-08-18
390
+
391
+ ### Added
392
+
393
+ - **`nexusmem mark-stale <nodeId> --supersedes <newNodeId>`, `provenance`, and manual staleness
394
+ tracking.** A pre-Show-HN pass answering a public critique that this couldn't tell an observed
395
+ fact from a guess, or retire a stale conclusion. Every node now carries `provenance`
396
+ (`observed`/`inferred`, set per-collector: git commits, diffs, and shell commands are `observed`;
397
+ conversation turns, session summaries, and doc sections are `inferred`) and an optional
398
+ `supersedes` link. `mark-stale` writes that link; the ranker applies a flat down-weight to whatever
399
+ it points at, but never deletes it -- the old node stays queryable, just usually loses to its
400
+ replacement. `provenance` is shown as a `[observed]`/`[inferred]` tag on every query result (CLI
401
+ and MCP `search_memory` share the same renderer). This is deliberately not automatic: nothing
402
+ detects staleness on its own, a human or agent still has to notice the contradiction and run the
403
+ command. See the README's new "Manual staleness & provenance" section.
404
+
405
+ ### Verified
406
+
407
+ - **`forget` does not leak through vector search.** Checked whether `MemoryStore.forget` excludes a
408
+ tombstoned node from `sqlite-vec` results only via a query-time filter (which every vector query
409
+ path would need to apply consistently) or by deleting the embedding row outright. It already does
410
+ the latter -- `dropEmbedding` runs before the node row is deleted, in the same transaction, on both
411
+ query paths (`runHybridQuery` and `runCrossProjectQuery`, which both call the same
412
+ `MemoryStore.vectorSearch`). No fix was needed; added a regression test
413
+ (`tests/vector.test.ts`) that forgets an embedded node and asserts both `vectorSearch` returns
414
+ nothing and the `nodes_vec` row count drops to zero, so this can't silently regress.
415
+ - **`forget` survives `sync --rebuild`.** This was the point of v0.5.0 and was already covered
416
+ end-to-end in `tests/forget.test.ts`. Added a lower-level `tests/store.test.ts` case pinning the
417
+ exact mechanism: `clearProject` (what `--rebuild` calls before re-ingesting) only touches
418
+ `nodes`/`nodes_vec`/`sync_state`, never `deny_list`, so a re-ingest of the same content is denied
419
+ again rather than resurrected.
420
+
421
+ ## [0.5.1] — 2026-08-17
422
+
423
+ ### Added
424
+
425
+ - **`nexusmem forget --export <path>` / `forget --import <path>`: carry a deny-list across a clone or
426
+ restore.** `.nexusmem/` is gitignored by design, so `deny_list` never traveled with `git clone`/
427
+ `git push` — confirmed live 2026-08-17 that a fresh clone of the exact same repo resurrected a value
428
+ already forgotten elsewhere, with zero deny-list protection, because git history (what a fresh `sync`
429
+ re-derives from) is fully portable while the deny-list that would have blocked it was not. `--export`
430
+ writes the active entries to a plaintext JSON file (loudly warned as exactly as sensitive as the
431
+ values it holds — never meant for git, moved through whatever secure channel the user already
432
+ trusts); `--import` re-applies each new entry through `forget` itself, so an imported value is
433
+ deleted from the new checkout's nodes too, not just blocked going forward. Same dry-run-by-default /
434
+ `--yes` convention as the rest of `forget`. See `docs/forget-mechanism.md`.
435
+
436
+ ## [0.5.0] — 2026-08-17
437
+
438
+ ### Added
439
+
440
+ - **`nexusmem forget <value>`: permanent, value-keyed deletion.** The finer-grained complement to
441
+ `sync --prune-source` (which only deletes at the whole-collector-source granularity): forgets one
442
+ exact string or `--regex` pattern, deleting every node it currently matches *and* writing a
443
+ standing deny-list entry so the value can never be re-ingested — closing the one gap an external
444
+ source-level review flagged as its most serious finding: the append-only shell-hook log (and a
445
+ full transcript re-read) are untouched by any prune, so `sync --rebuild` used to resurrect exactly
446
+ what had just been deleted. Every removal leaves a hash-only tombstone (never the forgotten
447
+ content itself — `body`/`title` are stored as sha256 only) and the whole operation writes one
448
+ `mutation_audit` row, whether or not anything matched. Dry-run by default, matching
449
+ `--prune-source`'s convention exactly; `--yes` confirms; `--list` shows active entries. Permanent
450
+ in v0 — no `--remove`, matching the existing irreversible framing of `--prune-source`/`--rebuild`.
451
+ See `docs/forget-mechanism.md`.
452
+
453
+ ## [0.4.0] — 2026-08-16
454
+
455
+ ### Added
456
+
457
+ - **`nexusmem status` now warns when prior project identities still hold nodes.** A renamed git
458
+ remote can leave stale data under the old identity; status reports both the identity and node
459
+ counts and points to `sync --prune-source <name>` instead of leaving that data discoverable only
460
+ through a raw SQLite query.
461
+ - **`docs/competitor-comparison.md`: an honest, source-level comparison against `riponcm/projectmem`** (705
462
+ GitHub stars vs. this project's 8, at time of writing) — a real, working competitor read in full (not
463
+ judged from its README), covering where the two tools' failure-tracking, import-graph coverage, and
464
+ token-savings claims genuinely differ. Cites a freshly re-run benchmark (`npm run bench`, not a stale
465
+ table) alongside projectmem's own `pjm score` constants, read directly from its source. Linked from the
466
+ README's `## What it costs you` section and a short website section near the existing stats.
467
+ - **`nexusmem hook git install|remove|status`: a real git pre-commit hook.** Installs a marked block into
468
+ `.git/hooks/pre-commit` that runs `nexusmem precheck` (no `--strict`, so it can never block a commit on
469
+ its own) before each commit — the automatic counterpart to the advisory `precheck` command. Refuses to
470
+ touch a pre-existing foreign hook (husky, lint-staged, lefthook, ...) unless `--force` is passed, in which
471
+ case it appends after the existing content rather than before, so the foreign hook still runs first and
472
+ keeps deciding whatever it already decided. Idempotent (`nexusmem hook git install` twice is a no-op) and
473
+ removable cleanly, including restoring a foreign hook to its original content if one was appended onto.
474
+ Live-verified against a real scratch git repo on Windows: fresh install, a real `git commit` that
475
+ triggered the hook and printed a correct precheck report, clean removal, and both the refuse-without-force
476
+ and append-with-force foreign-hook paths.
477
+ - **`nexusmem precheck`: proactive pre-commit warnings.** Checks staged (or `--working`, or explicit `--files`)
478
+ files against project memory and warns about unresolved past failures and high recent churn *before* you
479
+ commit — advisory by default (always exits 0; `--strict` turns an unresolved failure into a non-zero exit).
480
+ Matches a file's own basename tokens against still-unlinked `shell_command` failures (no
481
+ `resolved_by:*` link from `sync --link-failures`), reusing `filterBoilerplateTokens` from the
482
+ discussion-bridge heuristic — now exported and parameterized by node kind so it can be corpus-relative
483
+ against `shell_command` history instead of only `conversation_turn`/`session_summary`. Churn is scoped to
484
+ `git_commit`-kind `node_files` touches only, so it doesn't double-count the identical touches `code_diff`
485
+ nodes also record. Deliberately does not yet install as a real git hook (see the module comment in
486
+ `src/correlate/precheck.ts` for why capture-time `git status` diffing and past-commit correlation were both
487
+ rejected) — that's a follow-up once this signal has been dogfooded.
488
+ - **JS/TS import-graph edges.** `nexusmem scan-structure` previews (and `sync` now ingests) file→file
489
+ import relationships across a project's tracked `.ts`/`.tsx`/`.js`/`.jsx` files — a dependency-free
490
+ regex extractor (`src/structure/extract.ts`) resolves relative `import`/`export ... from`/`require`/
491
+ dynamic-`import` specifiers against the tracked-path set, correctly rewriting the common TS/ESM
492
+ `./foo.js` specifier back to its real `foo.ts` source. Stored in a new `file_edges` table (schema
493
+ v4), replaced wholesale on every sync since edges describe current tree state, not history. Surfaced
494
+ as a `structure` line in `nexusmem status`; not yet wired into `query` ranking or exposed as an MCP
495
+ tool — that's a follow-on design question, not this pass's job.
496
+
497
+ ## [0.3.3] — 2026-08-16
498
+
499
+ ### Added
500
+
501
+ - **`nexusmem status` now shows failure→fix chain counts** — `N/M failure(s) resolved (X retry, Y
502
+ discussion)`, plus a hint to run `sync --link-failures` when failures remain unresolved. The
503
+ chain feature is this project's most distinctive capability, but was previously invisible to
504
+ anyone who didn't already know to query `node_links` directly. Backed by the new
505
+ `getChainStats` in `src/correlate/failure-fix.ts`, which dedupes failures resolved by both
506
+ heuristics rather than double-counting them.
507
+
508
+ ### Fixed
509
+
510
+ - **Discussion-bridge heuristic (`sync --link-failures`): corpus-relative boilerplate tokens no
511
+ longer produce false-positive failure→fix links.** Re-dogfooded at larger scale against a second
512
+ real project's history: a command made entirely of words that saturate a project's own corpus
513
+ (e.g. this repo's own name/verbs) could AND-match an unrelated turn that just happened to mention
514
+ the same words, and bm25 score alone could not separate that from a true positive (measured: the
515
+ false positive scored *stronger* than two real true positives). `filterBoilerplateTokens` in
516
+ `src/correlate/failure-fix.ts` drops any token that appears in over 20% of a project's own
517
+ `conversation_turn`/`session_summary` history before building the match query — measured against
518
+ real data, not guessed — and skips the discussion-match attempt entirely (rather than falling back
519
+ unfiltered) when every token turns out to be boilerplate, since a missed link is preferred over a
520
+ false one for this heuristic. Below 10 discussable nodes the filter is skipped, since frequency
521
+ isn't a meaningful signal yet on a young project.
522
+
523
+ ## [0.3.2] — 2026-08-16
524
+
525
+ ### Added
526
+
527
+ - **`mcpName` field in `package.json`**, required by the official MCP registry
528
+ (registry.modelcontextprotocol.io) to verify that whoever publishes `server.json` under
529
+ `io.github.yaminbkk/nexusmem` also controls the `nexusmem` npm package itself — the registry
530
+ rejects a publish attempt otherwise. No behavior change for CLI/MCP users; this is purely a
531
+ registry-ownership proof.
532
+ - **`list_recent_memory` MCP tool** — chronological listing of a repository's most recently
533
+ remembered nodes (git commits, diffs, shell commands, docs, conversation, session summaries),
534
+ newest first. Distinct from `search_memory`: no query, just "what has this project's memory
535
+ recorded lately" — built for the VS Code extension's sidebar view, which lists rather than
536
+ searches. Backed by `MemoryStore.listRecentNodes`, reusing the existing `idx_nodes_project_ts`
537
+ index.
538
+ - **`sync --prune-source <name>` and `sync --prune-stale-shell`** — drop one source's nodes without a
539
+ full `--rebuild`, which loses history that can't be re-read from disk (the shell tail window, older
540
+ conversation turns). `--prune-stale-shell` is a shortcut for the three dead pre-hook shell-scrape
541
+ sources (`shell:pwsh`, `shell:bash`, `shell:zsh`) at once. Dry-run by default — prints the matching
542
+ count and does nothing until `--yes` is also given, since this is an irreversible full wipe of the
543
+ named source(s), unlike `--rebuild`'s no-prompt full-project reset. Also sweeps any prior project
544
+ identity of this same repo (the id a renamed git remote leaves behind after
545
+ `fix(store): reconcile memory stranded by a changed git remote URL` migrates what it can) — a
546
+ live-id-only prune could not reach nodes reconciliation deliberately left in place. Exposed on both
547
+ the CLI and the MCP `sync_project` tool.
548
+ - **Discussion-heuristic failure→fix chains now surface**, tightened to an AND-joined significant-
549
+ token match instead of the original OR match. Re-verified against this repo's own real database:
550
+ 5/5 discussion links correct (was ~half wrong when it shipped unsurfaced in 0.3.0). Chains now
551
+ follow across projects in `query --all-projects` too.
552
+
553
+ ### Fixed
554
+
555
+ - **`sync_project`'s summary no longer contains raw ANSI color codes on Windows.** `runInit`/`runSync`
556
+ format their output with picocolors for terminal display, and picocolors treats `platform ===
557
+ 'win32'` as sufficient evidence of color support on its own, without checking `isTTY` — correct for
558
+ a real terminal, wrong for the MCP JSON-RPC channel, which is piped on every platform. Found live: a
559
+ real MCP client (the VS Code extension's Output channel) rendered the raw escape codes as literal
560
+ text instead of color. Stripped at the MCP boundary in `syncProject`, leaving the CLI's own terminal
561
+ output untouched.
562
+
563
+ ## [0.3.1] — 2026-08-15
564
+
565
+ ### Added
566
+
567
+ - **`scripts/benchmark.ts` (`npm run bench`) — a reproducible end-to-end token-saving benchmark.**
568
+ Compares `packed.tokensUsed` against two baselines (full-file-read and `git log -p`) for the same
569
+ files a query's packed nodes touch, over a query set derived mechanically from the corpus itself
570
+ rather than hand-picked. Used to measure the README's `## What it costs you` numbers against both
571
+ this repo (62 commits) and a 9,567-commit external corpus (`vitejs/vite`) — see README for the
572
+ numbers and their methodology caveats.
573
+
574
+ ### Fixed
575
+
576
+ - **A generic 2-3 letter local model title, "id" as a search token, and one node's chunks flooding a
577
+ result set — three ranking/retrieval edge cases found by dogfooding, each verified with a red test
578
+ before the fix.**
579
+ - Session-summary titles: the local model sometimes wrote a role-framing line ("Role: Lead Systems
580
+ Engineer...") instead of a summary, in Thai and English alike. The existing generic-title filter
581
+ didn't catch either language, since it only matched English words like "summary"/"update".
582
+ - Search: the token `id` alone was prefix-matching unrelated shell commands like
583
+ `winget install --id ...`, because every query token was OR-ed with no floor and no stopword
584
+ list, and bm25 gives a rare-but-generic token an inflated score purely from scarcity.
585
+ - Packing: `conversation_turn` and `doc_section` both chunk one reply or file into several nodes
586
+ sharing the same timestamp; up to 2 may now appear in one packed result, down from unlimited.
587
+
588
+ - **A repo's memory could silently split in two if its git remote URL ever changed** (a GitHub
589
+ account rename, an org transfer). Project identity is derived from the remote URL on purpose — so
590
+ the same repo re-cloned to a new path or machine keeps sharing memory — but a changed URL on the
591
+ *same* path minted a new id and stranded every node synced under the old one, invisible to
592
+ `status`/`query`/MCP from then on. `sync` now detects a prior id already recorded in the repo's own
593
+ database and reconciles it forward: recomputable node kinds (session summaries, hook-sourced shell
594
+ history) are migrated under their correct new id and deduplicated against anything already synced;
595
+ conversation turns, whose identity can't be recomputed, are reassigned in place. Git commits,
596
+ diffs, and doc sections are left alone — a normal sync already re-derives them completely, so
597
+ there is nothing to migrate.
598
+
599
+ ## [0.3.0] — 2026-08-13
600
+
601
+ **Upgrade note.** The first `sync` after upgrading drops every stored embedding and rebuilds it.
602
+ This is not optional and it is not a bug: embeddings now come from Ollama's `/api/embed`, which
603
+ returns L2-normalised vectors, while the previous `/api/embeddings` did not — measured norms of 1.0
604
+ and 20.7 for the same input. `nodes_vec` ranks by Euclidean distance and records no per-row
605
+ provenance, so a corpus holding both would separate by scale rather than by meaning. `sync` says
606
+ what it dropped, nodes are untouched, and BM25 keeps working while the rebuild runs. On this repo
607
+ the rebuild was 833 nodes in one pass, inside a 9-second sync.
608
+
609
+ ### Added
610
+
611
+ - **Session summaries via a local model** (`sources.session`, opt-in, off by default). Each
612
+ finished session becomes one distilled `session_summary` node — decisions and their reasons —
613
+ alongside the raw exchanges. Runs a local Ollama chat model (`qwen2.5:3b` by default); nothing is
614
+ downloaded automatically and no transcript leaves the machine. New `scan-session` command, with
615
+ `--dry-run` to print the exact prompt a session would produce without calling the model.
616
+ Bounded three ways: a session must be quiet for `settleMinutes` (default 30) before it is
617
+ eligible, the prompt is hashed so an unchanged session never reaches the model again, and
618
+ `maxSessions` caps how many are summarized per sync. Every exchange is redacted before the model
619
+ sees it, and the model's own output is redacted again before it is stored.
620
+ - **`sync --embed-limit <n>`** to cap the embedding pass, for when draining the whole backlog is not
621
+ wanted.
622
+
623
+ ### Changed
624
+
625
+ - **The embedding pass drains the backlog in one `sync`** instead of stopping after 200 nodes, and
626
+ sends texts to Ollama in batches of 32 — measured at 4.21x the throughput of one call per node
627
+ (20.3ms → 4.8ms per node, over 96 real nodes from this repo). Leaving it uncapped is safe because
628
+ paging walks rowids monotonically, so a node the provider failed on is passed over rather than
629
+ retried forever, and because three consecutive dead requests end the pass: an Ollama that is not
630
+ running now costs three requests rather than one timeout per node.
631
+ - **Embeddings carry a provider identity.** Changing the embedding model, or upgrading from a
632
+ release that recorded no identity, drops the vectors and re-embeds rather than ranking across a
633
+ mixture.
634
+ - **Ranking priors now share one budget instead of getting one each.** `signal` and `recency` are
635
+ query-independent, and each was separately capped at overturning a 2× relevance gap. The score
636
+ multiplies them, so together they could overturn 4× — which is not a corner case but a description
637
+ of every commit made during an active working day, fresh and high-signal at once. A query about the
638
+ PowerShell hook returned two unrelated same-day `fix:` commits at ranks 3 and 4 while the section
639
+ that answered it sat at rank 6. The 2× budget is now the bound on the priors *jointly*, split
640
+ between them (`signal^0.215 × recency^0.288`, down from `^0.431` and `^0.576`), and a third prior
641
+ would re-divide the same budget rather than enlarge it. Measured on four real queries against this
642
+ repository's memory: the answering section rose in three of them — the rationale for "why BM25
643
+ before vector search" went from rank 4 to rank 1 — and no query's correct top hit was displaced.
644
+
645
+ ### Known limitation
646
+
647
+ - Session-summary *titles* depend on the model following a fixed output format, and a 3B model often
648
+ does not. Measured over 14 real sessions, roughly a third came back usable; the rest were
649
+ conversational preambles, stray bullets, or a bare "Summary of the Session". Those are rejected
650
+ and the title falls back to the first line of the question that opened the session — always
651
+ specific, not always elegant. Compliance was worst on long sessions and on transcripts not in
652
+ English. `sources.session.model` takes a larger model if it matters.
653
+
654
+ ## [0.2.0] — 2026-08-12
655
+
656
+ **Upgrade note.** Both new sources are on by default, so the first `sync` after upgrading an
657
+ existing project ingests the patches of its 200 most recent commits and starts recording the
658
+ repository in `~/.nexusmem/projects.json`. Set `sources.diff.enabled` to `false` in
659
+ `.nexusmem/config.json` if you would rather not, and `NEXUSMEM_HOME` relocates the user-scoped
660
+ directory. Nothing existing is rewritten or lost.
661
+
662
+ ### Added
663
+
664
+ - **Diff-level nodes.** Commit patches are now indexed, one node per changed file, so a question
665
+ about *what the change looked like* reaches the lines themselves rather than the commit message
666
+ and a `+41/-6` summary. New `code_diff` kind, `diff` source, `scan-diff` preview command, and a
667
+ `sources.diff` config block. Read by a second `git log --patch` walk with its own cursor: folding
668
+ it into the existing `--numstat` walk would put patch text and numstat rows in one field, where a
669
+ diff line reading `-1\t2\tfoo` is indistinguishable from a real file entry.
670
+ Bounded on purpose — 200 commits on a first sync, 20 files per commit, no merges (their patch
671
+ exists only in a combined format this parser does not read), and binaries, lockfiles and build
672
+ output skipped. Patches are redacted with the shape-matching rules only; the key/value rule that
673
+ serves prose would rewrite `const apiKey = process.env.SERVICE_API_KEY` into a redaction marker.
674
+ - **Cross-project recall.** `query --all-projects` (and `search_memory`'s `allProjects`) searches
675
+ every repository NexusMem has been run in on this machine, tagging each result with the repository
676
+ it came from. Databases stay per-repository — a shared global store was rejected for giving up the
677
+ property that deleting one repo's `.nexusmem/` removes that repo's memory and nothing else — so a
678
+ plain index at `~/.nexusmem/projects.json`, written by `init` and refreshed by `sync`, is what
679
+ makes the others findable. New `projects` command lists it; `--prune` forgets entries whose
680
+ database is gone. A stale or corrupt registry degrades the query, never fails it.
681
+ Ranking fuses each project's list by rank (RRF) instead of comparing raw BM25 costs, which are
682
+ computed against their own corpus and are not comparable across databases. The bias this leaves —
683
+ every project's rank-1 hit is worth the same, so recall favours breadth — is documented rather
684
+ than hidden.
685
+ - **Query-aware diff excerpts.** A packed summary is ~320 characters and a patch is thousands, so
686
+ the packer now picks the hunk whose tokens match the query and starts the excerpt at the changed
687
+ line. Found by dogfooding: "what flags are passed to every git invocation" retrieved the right
688
+ file and then spent the whole summary on a class definition seventy lines above the answer.
689
+ Matching splits identifiers on case and underscore boundaries, because `\bretry\b` does not match
690
+ `RETRY_DELAYS_MS` and a natural-language question otherwise never meets the code it is about.
691
+ - `CHANGELOG.md` now ships inside the npm tarball. npm's always-included list covers `package.json`,
692
+ `README` and `LICENSE` but not the changelog, so it previously reached GitHub readers only.
693
+
694
+ ### Internal
695
+
696
+ - The test suite no longer writes to the developer's real `~/.nexusmem`. `sync` records the
697
+ repository it ingested in the project registry, and the suite syncs temporary repositories in
698
+ several places, so a green run left seven dead entries behind — found by running `nexusmem
699
+ projects` after the fact, not by any test. `tests/setup.ts` now points `NEXUSMEM_HOME` at a
700
+ throwaway directory for the whole suite, and one test fails if that guard is ever removed.
701
+ - `npm run smoke` drives the *packaged* artifact: build, pack, install into a throwaway directory,
702
+ then run the installed CLI, an end-to-end ingest/query against a fixture repository, and an
703
+ `initialize` handshake over real stdio. It also audits the manifest `npm publish` would send,
704
+ which is a different artifact from the tarball. Both defects that ever reached npm users passed a
705
+ green unit suite first; each is now pinned by a check verified to fail when the defect is
706
+ reintroduced. Runs in CI on Linux and Windows as its own job.
707
+
708
+ ## [0.1.2] — 2026-08-10
709
+
710
+ ### Fixed
711
+
712
+ - `nexusmem --version` printed `0.1.0` on 0.1.1. The version string in `src/cli/index.ts` was a
713
+ literal separate from `package.json`, and the 0.1.1 bump only touched the latter. `src/mcp/server.ts`
714
+ had the same problem in its `McpServer` constructor, so an MCP client's `initialize` handshake
715
+ would have reported the same stale version. Both now read the real version through
716
+ `readOwnVersion()` in `src/core/version.ts`, which resolves `package.json` via `import.meta.url`.
717
+ Found by running the published package end to end rather than trusting `npm publish --dry-run`
718
+ and the registry API, neither of which executes a `--version` flag.
719
+
720
+ The ingestion and retrieval pipeline was never affected — only the two places that report a version
721
+ independently of running a command.
722
+
723
+ ## [0.1.1] — 2026-08-10
724
+
725
+ ### Changed
726
+
727
+ - README rewritten for someone deciding whether to read the source: what it does, how retrieval
728
+ scores, what it costs, and where it breaks. `README.md` ships inside the package, so this is a
729
+ real change to what npm delivers — but no code changed between 0.1.0 and 0.1.1.
730
+ - Documented the ranking flaw the tool found in itself, and the fact that the conversation source
731
+ in the sample `status` output is opt-in rather than default.
732
+ - Dropped `&&` from the quickstart, which Windows PowerShell 5.1 cannot parse.
733
+
734
+ ## [0.1.0] — 2026-08-10
735
+
736
+ First public release.
737
+
738
+ ### Added
739
+
740
+ - **Collectors.** Git history (commit metadata and diff stats, not diff bodies), shell commands with
741
+ exit codes via an opt-in PowerShell hook, tracked markdown docs via `git ls-files -- '*.md'`, and
742
+ opt-in assistant transcripts.
743
+ - **Hybrid retrieval.** SQLite FTS5 BM25 and `sqlite-vec` KNN over 768-dim embeddings, fused with
744
+ reciprocal rank fusion, then ranked by relevance against signal and recency priors and packed into
745
+ an explicit token budget.
746
+ - **MCP server** over stdio (`nexusmem mcp`) exposing `search_memory`, `sync_project` and
747
+ `get_status`, for Claude Desktop, Cursor, Windsurf and other MCP clients.
748
+ - **CLI**: `init`, `sync`, `query`, `status`, `mcp`, and `hook install|remove|status`, plus four
749
+ dry-run previews — `scan-git`, `scan-shell`, `scan-docs`, `scan-conversation` — that write nothing
750
+ and print the nodes ingestion would create with their signal scores.
751
+ - Content-addressed node ids (`sha256(projectId + kind + naturalKey)`), so `sync` is idempotent and
752
+ two clones of one repository share a memory namespace.
753
+ - Everything stays on the machine: one SQLite database in WAL mode under `<repo>/.nexusmem/`.
754
+
755
+ ### Notes
756
+
757
+ - Requires Node **>= 22**. `better-sqlite3` 12.11.1 publishes no prebuilt binary for Node 20 — its
758
+ prebuilds start at ABI 127 — so a lower floor would have been a promise the package could not keep.
759
+ Do not lower it without checking upstream prebuilds first.
760
+ - Not done at this release: diff bodies are not indexed, queries are scoped to a single project,
761
+ there is no local-model summarization pass, and the conversation collector has never been audited
762
+ for the stale-node bug that was found and fixed in the docs collector.
763
+
764
+ [Unreleased]: https://github.com/yaminbkk/NexusMem/compare/v0.11.0...HEAD
765
+ [0.11.0]: https://github.com/yaminbkk/NexusMem/compare/v0.10.5...v0.11.0
766
+ [0.10.5]: https://github.com/yaminbkk/NexusMem/compare/v0.10.4...v0.10.5
767
+ [0.10.4]: https://github.com/yaminbkk/NexusMem/compare/v0.10.3...v0.10.4
768
+ [0.10.3]: https://github.com/yaminbkk/NexusMem/compare/v0.10.2...v0.10.3
769
+ [0.10.2]: https://github.com/yaminbkk/NexusMem/compare/v0.10.1...v0.10.2
770
+ [0.10.1]: https://github.com/yaminbkk/NexusMem/compare/v0.10.0...v0.10.1
771
+ [0.10.0]: https://github.com/yaminbkk/NexusMem/compare/v0.9.1...v0.10.0
772
+ [0.9.1]: https://github.com/yaminbkk/NexusMem/compare/v0.9.0...v0.9.1
773
+ [0.9.0]: https://github.com/yaminbkk/NexusMem/compare/v0.8.0...v0.9.0
774
+ [0.8.0]: https://github.com/yaminbkk/NexusMem/compare/v0.7.0...v0.8.0
775
+ [0.7.0]: https://github.com/yaminbkk/NexusMem/compare/v0.6.0...v0.7.0
776
+ [0.6.0]: https://github.com/yaminbkk/NexusMem/compare/v0.5.4...v0.6.0
777
+ [0.5.4]: https://github.com/yaminbkk/NexusMem/compare/v0.5.3...v0.5.4
778
+ [0.5.3]: https://github.com/yaminbkk/NexusMem/compare/v0.5.2...v0.5.3
779
+ [0.5.2]: https://github.com/yaminbkk/NexusMem/compare/v0.5.1...v0.5.2
780
+ [0.5.1]: https://github.com/yaminbkk/NexusMem/compare/v0.5.0...v0.5.1
781
+ [0.5.0]: https://github.com/yaminbkk/NexusMem/compare/v0.4.0...v0.5.0
782
+ [0.4.0]: https://github.com/yaminbkk/NexusMem/compare/v0.3.3...v0.4.0
783
+ [0.3.3]: https://github.com/yaminbkk/NexusMem/compare/v0.3.2...v0.3.3
784
+ [0.3.2]: https://github.com/yaminbkk/NexusMem/compare/v0.3.1...v0.3.2
785
+ [0.3.1]: https://github.com/yaminbkk/NexusMem/compare/v0.3.0...v0.3.1
786
+ [0.3.0]: https://github.com/yaminbkk/NexusMem/compare/v0.2.0...v0.3.0
787
+ [0.2.0]: https://github.com/yaminbkk/NexusMem/compare/v0.1.2...v0.2.0
788
+ [0.1.2]: https://github.com/yaminbkk/NexusMem/compare/v0.1.1...v0.1.2
789
+ [0.1.1]: https://github.com/yaminbkk/NexusMem/compare/v0.1.0...v0.1.1
790
+ [0.1.0]: https://github.com/yaminbkk/NexusMem/releases/tag/v0.1.0