nexus-prime 4.3.2 → 4.4.0

package/dist/engines/rag-collections.js

@@ -3,16 +3,22 @@ import * as path from 'path';
 import * as http from 'http';
 import * as https from 'https';
 import { randomUUID } from 'crypto';
+import { createEmbedder } from './embedder.js';
 import { resolveNexusStateDir } from './runtime-registry.js';
+import { computeSemanticScore } from './semantic-ranking.js';
 const MAX_CHUNK_CHARS = 1200;
 const DEFAULT_REMOTE_FETCH_TIMEOUT_MS = 15_000;
 const COLLECTION_ID_PATTERN = /^[A-Za-z0-9_-]{1,128}$/;
 export class RagCollectionStore {
     rootDir;
     requestTimeoutMs;
+    embedder;
+    embeddingDimensions;
     constructor(stateRoot = resolveNexusStateDir(), options = {}) {
         this.rootDir = path.join(stateRoot, 'rag-collections');
         this.requestTimeoutMs = Math.max(100, options.requestTimeoutMs ?? DEFAULT_REMOTE_FETCH_TIMEOUT_MS);
+        this.embedder = createEmbedder();
+        this.embeddingDimensions = this.embedder.embedSync('nexus rag probe').length;
         fs.mkdirSync(this.rootDir, { recursive: true });
     }
     listCollections() {
@@ -31,7 +37,7 @@ export class RagCollectionStore {
             return undefined;
         try {
             const parsed = JSON.parse(fs.readFileSync(target, 'utf8'));
-            return {
+            const collection = {
                 ...parsed,
                 tags: parsed.tags ?? [],
                 attachedRuntimeIds: parsed.attachedRuntimeIds ?? [],
@@ -39,6 +45,10 @@ export class RagCollectionStore {
                 sources: parsed.sources ?? [],
                 chunks: parsed.chunks ?? [],
             };
+            if (this.backfillCollectionEmbeddings(collection)) {
+                this.persist(collection);
+            }
+            return collection;
         }
         catch {
             return undefined;
@@ -80,6 +90,7 @@ export class RagCollectionStore {
                 bytes: Buffer.byteLength(content, 'utf8'),
             };
             const chunks = chunkText(content, sourceId, dedupeStrings(input.tags ?? collection.tags));
+            await this.embedChunks(source.label, chunks);
             collection.sources.push(source);
             collection.chunks.push(...chunks);
             sourcesAdded += 1;
@@ -122,7 +133,7 @@ export class RagCollectionStore {
     }
     retrieve(query, options = {}) {
         const limit = Math.max(1, Math.min(20, options.limit ?? 6));
-        const keywords = extractKeywords(query);
+        const queryVector = this.embedder.embedSync(query);
         const collections = options.collectionIds?.length
             ? options.collectionIds.map((collectionId) => this.getCollection(collectionId)).filter((collection) => Boolean(collection))
             : this.listCollections()
@@ -138,7 +149,20 @@ export class RagCollectionStore {
         return collections
             .flatMap((collection) => collection.chunks.map((chunk) => {
             const source = collection.sources.find((entry) => entry.sourceId === chunk.sourceId);
-            const score = scoreText(chunk.text, keywords) + scoreText(source?.label ?? '', keywords);
+            const normalizedEmbedding = this.ensureChunkEmbedding(chunk, source?.label ?? '');
+            const scoreBreakdown = computeSemanticScore({
+                query,
+                queryVector,
+                candidateText: `${source?.label ?? ''}\n${chunk.text}`,
+                candidateVector: normalizedEmbedding,
+                lexicalTexts: [chunk.text, source?.label ?? ''],
+                embedder: this.embedder,
+                weights: {
+                    semantic: 0.84,
+                    lexical: 0.16,
+                    path: 0,
+                },
+            });
             return {
                 collectionId: collection.collectionId,
                 collectionName: collection.name,
@@ -148,7 +172,8 @@ export class RagCollectionStore {
                 text: chunk.text,
                 tokens: chunk.tokens,
                 tags: chunk.tags,
-                score,
+                score: scoreBreakdown.final,
+                scoreBreakdown,
             };
         }))
             .filter((hit) => hit.score > 0)
@@ -207,6 +232,40 @@ export class RagCollectionStore {
         }
         return '';
     }
+    async embedChunks(sourceLabel, chunks) {
+        await Promise.all(chunks.map(async (chunk) => {
+            try {
+                chunk.embedding = await this.embedder.embed(`${sourceLabel}\n${chunk.text}`);
+            }
+            catch {
+                chunk.embedding = undefined;
+            }
+            chunk.embedding = this.ensureChunkEmbedding(chunk, sourceLabel);
+        }));
+    }
+    backfillCollectionEmbeddings(collection) {
+        let changed = false;
+        const sourceLabels = new Map(collection.sources.map((source) => [source.sourceId, source.label]));
+        for (const chunk of collection.chunks) {
+            const normalized = this.ensureChunkEmbedding(chunk, sourceLabels.get(chunk.sourceId) ?? '');
+            if (chunk.embedding !== normalized) {
+                chunk.embedding = normalized;
+                changed = true;
+            }
+            else if (!Array.isArray(chunk.embedding) || chunk.embedding.length !== this.embeddingDimensions) {
+                changed = true;
+            }
+        }
+        return changed;
+    }
+    ensureChunkEmbedding(chunk, sourceLabel) {
+        if (Array.isArray(chunk.embedding)
+            && chunk.embedding.length === this.embeddingDimensions
+            && chunk.embedding.every((value) => Number.isFinite(value))) {
+            return chunk.embedding;
+        }
+        return this.embedder.embedSync(`${sourceLabel}\n${chunk.text}`);
+    }
 }
 function dedupeStrings(values) {
     return [...new Set(values.map((value) => value.trim()).filter(Boolean))];
@@ -288,16 +347,6 @@ function fetchText(targetUrl, timeoutMs) {
         req.on('error', (error) => finish(() => reject(error)));
     });
 }
-function extractKeywords(value) {
-    return String(value || '')
-        .toLowerCase()
-        .split(/[^a-z0-9]+/)
-        .filter((token) => token.length >= 3);
-}
-function scoreText(value, keywords) {
-    const lower = String(value || '').toLowerCase();
-    return keywords.reduce((sum, keyword) => sum + (lower.includes(keyword) ? 3 : 0), 0);
-}
 function estimateTokens(value) {
     return Math.max(1, Math.ceil(String(value || '').length / 4));
 }

package/dist/engines/rag-collections.js.map

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package/dist/engines/runtime-registry.d.ts

@@ -123,6 +123,7 @@ export interface RuntimeCatalogHealthEntry {
     rejected: number;
     readable: boolean;
     localDirectory?: string;
+    localDirectories?: string[];
     localOverrideFiles?: number;
     issues: string[];
 }

package/dist/engines/runtime-registry.d.ts.map

@@ -1 +1 @@
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package/dist/engines/runtime-registry.js

@@ -36,22 +36,20 @@ export function resolveNexusStateDir() {
     const candidates = [
         process.env.NEXUS_STATE_DIR?.trim(),
         path.join(os.homedir(), '.nexus-prime'),
-        path.join(os.tmpdir(), 'nexus-prime-state'),
-    ].filter((c) => Boolean(c) && !c.startsWith('/.'));
-    for (const candidate of candidates) {
+        path.join('/tmp', 'nexus-prime-state'),
+    ].filter((c) => Boolean(c));
+    const writable = candidates.filter((candidate) => {
         try {
-            fs.mkdirSync(candidate, { recursive: true });
             fs.accessSync(candidate, fs.constants.W_OK);
-            return candidate;
+            return true;
         }
         catch {
-            // Try next candidate
+            return false;
         }
-    }
-    // Last resort: tmpdir should always be writable
-    const fallback = path.join(os.tmpdir(), 'nexus-prime-state');
-    fs.mkdirSync(fallback, { recursive: true });
-    return fallback;
+    });
+    const selected = writable[0] ?? path.join('/tmp', 'nexus-prime-state');
+    fs.mkdirSync(selected, { recursive: true });
+    return selected;
 }
 export class RuntimeRegistry {
     registryDir;

package/dist/engines/runtime-registry.js.map

@@ -1 +1 @@
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package/dist/engines/semantic-ranking.d.ts

@@ -0,0 +1,27 @@
+import type { Embedder } from './embedder.js';
+export interface SemanticScoreBreakdown {
+    semantic: number;
+    lexical: number;
+    keywordCoverage: number;
+    pathBoost: number;
+    final: number;
+    fallbackUsed: boolean;
+}
+export interface SemanticScoreInput {
+    query: string;
+    embedder: Embedder;
+    queryVector?: number[];
+    candidateText: string;
+    candidateVector?: number[];
+    lexicalTexts?: string[];
+    pathText?: string;
+    weights?: {
+        semantic?: number;
+        lexical?: number;
+        path?: number;
+    };
+}
+export declare function tokenizeSemanticText(text: string): Set<string>;
+export declare function extractSemanticKeywords(text: string): string[];
+export declare function computeSemanticScore(input: SemanticScoreInput): SemanticScoreBreakdown;
+//# sourceMappingURL=semantic-ranking.d.ts.map

package/dist/engines/semantic-ranking.d.ts.map

@@ -0,0 +1 @@
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package/dist/engines/semantic-ranking.js

@@ -0,0 +1,83 @@
+const DEFAULT_WEIGHTS = {
+    semantic: 0.78,
+    lexical: 0.17,
+    path: 0.05,
+};
+export function tokenizeSemanticText(text) {
+    return new Set(String(text || '')
+        .toLowerCase()
+        .replace(/[^a-z0-9\s]/g, ' ')
+        .split(/\s+/)
+        .filter((token) => token.length > 2));
+}
+export function extractSemanticKeywords(text) {
+    return [...tokenizeSemanticText(text)];
+}
+export function computeSemanticScore(input) {
+    const weights = { ...DEFAULT_WEIGHTS, ...input.weights };
+    const queryVector = input.queryVector ?? input.embedder.embedSync(input.query);
+    const candidateVector = input.candidateVector;
+    const semantic = (Array.isArray(candidateVector)
+        && candidateVector.length === queryVector.length)
+        ? clamp(input.embedder.cosineSimilarity(queryVector, candidateVector))
+        : 0;
+    const lexicalTexts = input.lexicalTexts?.length ? input.lexicalTexts : [input.candidateText];
+    const lexical = lexicalTexts.reduce((best, candidate) => Math.max(best, lexicalSimilarity(input.query, candidate)), 0);
+    const keywordCoverage = lexicalTexts.reduce((best, candidate) => Math.max(best, keywordCoverageScore(input.query, candidate)), 0);
+    const pathBoost = clamp(pathBoostScore(input.query, input.pathText), 0, 0.25);
+    const lexicalComposite = Math.max(lexical, keywordCoverage);
+    if (semantic <= 0) {
+        return {
+            semantic: 0,
+            lexical,
+            keywordCoverage,
+            pathBoost,
+            final: clamp(lexicalComposite * 0.85 + pathBoost),
+            fallbackUsed: lexicalComposite > 0 || pathBoost > 0,
+        };
+    }
+    return {
+        semantic,
+        lexical,
+        keywordCoverage,
+        pathBoost,
+        final: clamp(semantic * weights.semantic
+            + lexicalComposite * weights.lexical
+            + pathBoost * weights.path),
+        fallbackUsed: false,
+    };
+}
+function lexicalSimilarity(query, candidate) {
+    const queryTokens = tokenizeSemanticText(query);
+    const candidateTokens = tokenizeSemanticText(candidate);
+    if (queryTokens.size === 0 || candidateTokens.size === 0)
+        return 0;
+    const overlap = [...queryTokens].filter((token) => candidateTokens.has(token)).length;
+    const union = new Set([...queryTokens, ...candidateTokens]).size;
+    return union === 0 ? 0 : overlap / union;
+}
+function keywordCoverageScore(query, candidate) {
+    const keywords = extractSemanticKeywords(query);
+    if (keywords.length === 0)
+        return 0;
+    const haystack = String(candidate || '').toLowerCase();
+    const matched = keywords.filter((keyword) => haystack.includes(keyword)).length;
+    return matched / keywords.length;
+}
+function pathBoostScore(query, pathText) {
+    if (!pathText)
+        return 0;
+    const keywords = extractSemanticKeywords(query);
+    const haystack = pathText.toLowerCase();
+    let matched = 0;
+    for (const keyword of keywords) {
+        if (haystack.includes(keyword)) {
+            matched += 1;
+        }
+    }
+    return Math.min(0.25, matched * 0.05);
+}
+function clamp(value, min = 0, max = 1) {
+    return Math.max(min, Math.min(max, Number.isFinite(value) ? value : 0));
+}
+//# sourceMappingURL=semantic-ranking.js.map

package/dist/engines/semantic-ranking.js.map

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package/dist/engines/skill-runtime.d.ts

@@ -85,6 +85,7 @@ export declare class SkillRuntime {
     private persistArtifact;
     private renderMarkdown;
     private registerSkillCard;
+    private persistCanonicalArtifact;
 }
 export declare const createSkillRuntime: (registry?: SkillCardRegistry, rootDir?: string, workspaceRoot?: string) => SkillRuntime;
 //# sourceMappingURL=skill-runtime.d.ts.map

package/dist/engines/skill-runtime.d.ts.map

@@ -1 +1 @@
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package/dist/engines/skill-runtime.js

@@ -6,47 +6,20 @@ import { z } from 'zod';
 import { BUILTIN_SKILL_PACKS, detectDomains, readMarkdownArtifacts, slugify, } from './runtime-assets.js';
 import { createEmbedder } from './embedder.js';
 import { getSharedNgramIndex } from './ngram-index.js';
-function tokenize(text) {
-    return new Set(text.toLowerCase()
-        .replace(/[^a-z0-9\s]/g, ' ')
-        .split(/\s+/)
-        .filter((word) => word.length > 2));
-}
-function jaccardSimilarity(setA, setB) {
-    if (setA.size === 0 || setB.size === 0)
-        return 0;
-    const intersection = new Set([...setA].filter((x) => setB.has(x)));
-    const union = new Set([...setA, ...setB]);
-    return intersection.size / union.size;
-}
-function computeSkillRelevance(goal, artifact) {
-    const goalTokens = tokenize(goal);
-    const nameTokens = tokenize(artifact.name);
-    const instructionTokens = tokenize(artifact.instructions || '');
-    const domainTokens = artifact.domain ? tokenize(artifact.domain) : new Set();
-    const nameScore = jaccardSimilarity(goalTokens, nameTokens);
-    const instructionScore = jaccardSimilarity(goalTokens, instructionTokens);
-    const domainScore = jaccardSimilarity(goalTokens, domainTokens);
-    // Substring boost: if any goal token appears as a substring of the skill name or domain, add +0.2
-    const nameLower = artifact.name.toLowerCase();
-    const domainLower = (artifact.domain || '').toLowerCase();
-    let substringBoost = 0;
-    for (const token of goalTokens) {
-        if (nameLower.includes(token) || domainLower.includes(token)) {
-            substringBoost = 0.2;
-            break;
-        }
-    }
-    return Math.max(nameScore, instructionScore * 0.7, domainScore * 0.5) + substringBoost;
-}
+import { computeSemanticScore } from './semantic-ranking.js';
 async function computeSemanticRelevance(goal, goalVector, artifact, embedder) {
     const artifactText = `${artifact.name} ${artifact.domain || ''} ${artifact.instructions || ''}`;
     if (!artifact.embedding) {
         artifact.embedding = await embedder.embed(artifactText);
     }
-    const semanticScore = embedder.cosineSimilarity(goalVector, artifact.embedding);
-    const lexicalScore = computeSkillRelevance(goal, artifact);
-    return Math.max(semanticScore, lexicalScore);
+    return computeSemanticScore({
+        query: goal,
+        queryVector: goalVector,
+        candidateText: artifactText,
+        candidateVector: artifact.embedding,
+        lexicalTexts: [artifact.name, artifact.domain ?? '', artifact.instructions ?? ''],
+        embedder,
+    }).final;
 }
 export class SkillRuntime {
     registry;
@@ -301,6 +274,14 @@ export class SkillRuntime {
         };
     }
     stage(artifact) {
+        if (!artifact.embedding) {
+            try {
+                artifact.embedding = this.getEmbedder().embedSync(`${artifact.name} ${artifact.domain ?? ''} ${artifact.instructions ?? ''}`);
+            }
+            catch {
+                // Semantic precomputation is best-effort.
+            }
+        }
         this.artifacts.set(artifact.skillId, artifact);
         this.persistArtifact(artifact);
         this.registerSkillCard(artifact);
@@ -402,31 +383,36 @@ export class SkillRuntime {
         }
     }
     loadLocalOverrides() {
-        const skillDir = path.join(this.workspaceRoot, '.agent', 'skills');
-        for (const entry of readMarkdownArtifacts(skillDir)) {
-            const frontmatter = entry.parsed.frontmatter;
-            const name = String(frontmatter.name ?? path.basename(entry.path, '.md'));
-            this.stage({
-                skillId: `skill_local_${slugify(name)}`,
-                version: 1,
-                name,
-                domain: String(frontmatter.domain ?? detectDomains(name)[0] ?? ''),
-                instructions: entry.parsed.body,
-                toolBindings: [],
-                riskClass: normalizeRiskClass(frontmatter.riskClass),
-                scope: 'base',
-                provenance: `local:${entry.path}`,
-                validationStatus: 'validated',
-                rolloutStatus: 'promoted',
-                effectiveness: {
-                    successes: 0,
-                    failures: 0,
-                    tokenDelta: 0,
-                    retriesAvoided: 0,
-                    verificationPasses: 0,
-                },
-                deploymentPoints: [],
-            });
+        const skillDirs = [
+            path.join(this.workspaceRoot, '.agent', 'skills'),
+            path.join(this.workspaceRoot, '.agents', 'skills'),
+        ];
+        for (const skillDir of skillDirs) {
+            for (const entry of readMarkdownArtifacts(skillDir)) {
+                const frontmatter = entry.parsed.frontmatter;
+                const name = String(frontmatter.name ?? path.basename(entry.path, '.md'));
+                this.stage({
+                    skillId: `skill_local_${slugify(name)}`,
+                    version: 1,
+                    name,
+                    domain: String(frontmatter.domain ?? detectDomains(name)[0] ?? ''),
+                    instructions: entry.parsed.body,
+                    toolBindings: [],
+                    riskClass: normalizeRiskClass(frontmatter.riskClass),
+                    scope: 'base',
+                    provenance: `local:${entry.path}`,
+                    validationStatus: 'validated',
+                    rolloutStatus: 'promoted',
+                    effectiveness: {
+                        successes: 0,
+                        failures: 0,
+                        tokenDelta: 0,
+                        retriesAvoided: 0,
+                        verificationPasses: 0,
+                    },
+                    deploymentPoints: [],
+                });
+            }
         }
     }
     persistArtifact(artifact) {
@@ -434,6 +420,7 @@ export class SkillRuntime {
         fs.mkdirSync(dir, { recursive: true });
         fs.writeFileSync(path.join(dir, 'artifact.json'), JSON.stringify(artifact, null, 2), 'utf-8');
         fs.writeFileSync(path.join(dir, 'skill.md'), this.renderMarkdown(artifact), 'utf-8');
+        this.persistCanonicalArtifact(artifact);
     }
     renderMarkdown(artifact) {
         const isQuarantined = artifact.provenance.startsWith('peer:');
@@ -483,6 +470,16 @@ export class SkillRuntime {
         };
         this.registry.register(card);
     }
+    persistCanonicalArtifact(artifact) {
+        if (artifact.rolloutStatus !== 'promoted')
+            return;
+        if (artifact.provenance === 'bundled' || artifact.provenance.startsWith('local:'))
+            return;
+        const canonicalDir = path.join(this.workspaceRoot, '.agent', 'skills', 'generated');
+        fs.mkdirSync(canonicalDir, { recursive: true });
+        const fileName = `${slugify(artifact.name).toLowerCase() || artifact.skillId}.md`;
+        fs.writeFileSync(path.join(canonicalDir, fileName), this.renderMarkdown(artifact), 'utf-8');
+    }
 }
 function normalizeRiskClass(value) {
     return value === 'mutate' || value === 'orchestrate' ? value : 'read';