nexus-agents 2.92.5 → 2.93.0

package/dist/chunk-NESW2TTD.js

@@ -0,0 +1,134 @@
+// src/config/defaults-env.ts
+function parseIntEnv(envKey, fallback) {
+  const envValue = process.env[envKey];
+  if (envValue === void 0) {
+    return fallback;
+  }
+  const parsed = parseInt(envValue, 10);
+  return isNaN(parsed) || parsed <= 0 ? fallback : parsed;
+}
+function parseFloatEnv(envKey, fallback) {
+  const envValue = process.env[envKey];
+  if (envValue === void 0) {
+    return fallback;
+  }
+  const parsed = parseFloat(envValue);
+  return isNaN(parsed) || !isFinite(parsed) ? fallback : parsed;
+}
+function parseBoolEnv(envKey, fallback) {
+  const envValue = process.env[envKey]?.toLowerCase();
+  if (envValue === void 0) {
+    return fallback;
+  }
+  if (envValue === "true" || envValue === "1") return true;
+  if (envValue === "false" || envValue === "0") return false;
+  return fallback;
+}
+function createGetTimeout(timeoutDefaults) {
+  return (key) => {
+    const envKey = `NEXUS_TIMEOUT_${key.replace(/Ms$/, "").toUpperCase()}`;
+    return parseIntEnv(envKey, timeoutDefaults[key]);
+  };
+}
+function createGetRetryConfig(retryDefaults) {
+  return () => {
+    return {
+      maxRetries: parseIntEnv("NEXUS_RETRY_MAX_RETRIES", retryDefaults.maxRetries),
+      baseDelayMs: parseIntEnv("NEXUS_RETRY_BASE_DELAY", retryDefaults.baseDelayMs),
+      maxDelayMs: parseIntEnv("NEXUS_RETRY_MAX_DELAY", retryDefaults.maxDelayMs),
+      jitterFactor: parseFloatEnv("NEXUS_RETRY_JITTER", retryDefaults.jitterFactor)
+    };
+  };
+}
+function createGetRateLimitConfig(rateLimitDefaults) {
+  return () => {
+    return {
+      requestsPerMinute: parseIntEnv("NEXUS_RATE_LIMIT_RPM", rateLimitDefaults.requestsPerMinute),
+      enabled: parseBoolEnv("NEXUS_RATE_LIMIT_ENABLED", rateLimitDefaults.enabled),
+      maxConcurrent: parseIntEnv(
+        "NEXUS_RATE_LIMIT_MAX_CONCURRENT",
+        rateLimitDefaults.maxConcurrent
+      ),
+      capacity: parseIntEnv("NEXUS_RATE_LIMIT_CAPACITY", rateLimitDefaults.capacity),
+      refillRate: parseIntEnv("NEXUS_RATE_LIMIT_REFILL_RATE", rateLimitDefaults.refillRate),
+      refillIntervalMs: parseIntEnv(
+        "NEXUS_RATE_LIMIT_REFILL_INTERVAL",
+        rateLimitDefaults.refillIntervalMs
+      )
+    };
+  };
+}
+function createGetCircuitBreakerConfig(cbDefaults) {
+  return () => {
+    return {
+      failureThreshold: parseIntEnv("NEXUS_CIRCUIT_BREAKER_THRESHOLD", cbDefaults.failureThreshold),
+      resetTimeoutMs: parseIntEnv("NEXUS_CIRCUIT_BREAKER_RESET_TIMEOUT", cbDefaults.resetTimeoutMs),
+      halfOpenSuccessThreshold: cbDefaults.halfOpenSuccessThreshold,
+      countTimeoutsAsFailures: cbDefaults.countTimeoutsAsFailures,
+      countAuthFailuresAsFailures: cbDefaults.countAuthFailuresAsFailures,
+      countRateLimitsAsFailures: cbDefaults.countRateLimitsAsFailures,
+      halfOpenMaxRequests: cbDefaults.halfOpenMaxRequests
+    };
+  };
+}
+function createGetToolRateLimit(toolRateLimits) {
+  return (tool) => {
+    return toolRateLimits[tool];
+  };
+}
+function createGetEnvVarDocumentation(defaults) {
+  return () => {
+    const t = defaults.TIMEOUT_DEFAULTS;
+    const r = defaults.RATE_LIMIT_DEFAULTS;
+    const rt = defaults.RETRY_DEFAULTS;
+    const cb = defaults.CIRCUIT_BREAKER_DEFAULTS;
+    return `# Environment Variable Overrides
+
+All defaults can be overridden via environment variables using the NEXUS_ prefix.
+
+## Timeouts
+
+| Variable | Default | Description |
+| -------- | ------- | ----------- |
+| NEXUS_TIMEOUT_CLI | ${String(t.cliMs)} | CLI execution timeout (ms) |
+| NEXUS_TIMEOUT_API | ${String(t.apiMs)} | API request timeout (ms) |
+| NEXUS_TIMEOUT_WORKFLOW | ${String(t.workflowMs)} | Workflow timeout (ms) |
+| NEXUS_TIMEOUT_MCP | ${String(t.mcpMs)} | MCP operation timeout (ms) |
+
+## Rate Limits
+
+| Variable | Default | Description |
+| -------- | ------- | ----------- |
+| NEXUS_RATE_LIMIT_RPM | ${String(r.requestsPerMinute)} | Requests per minute |
+| NEXUS_RATE_LIMIT_ENABLED | ${String(r.enabled)} | Enable rate limiting |
+| NEXUS_RATE_LIMIT_CAPACITY | ${String(r.capacity)} | Token bucket capacity |
+
+## Retries
+
+| Variable | Default | Description |
+| -------- | ------- | ----------- |
+| NEXUS_RETRY_MAX_RETRIES | ${String(rt.maxRetries)} | Maximum retry attempts |
+| NEXUS_RETRY_BASE_DELAY | ${String(rt.baseDelayMs)} | Base delay (ms) |
+| NEXUS_RETRY_MAX_DELAY | ${String(rt.maxDelayMs)} | Maximum delay (ms) |
+| NEXUS_RETRY_JITTER | ${String(rt.jitterFactor)} | Jitter factor (0-1) |
+
+## Circuit Breaker
+
+| Variable | Default | Description |
+| -------- | ------- | ----------- |
+| NEXUS_CIRCUIT_BREAKER_THRESHOLD | ${String(cb.failureThreshold)} | Failure threshold |
+| NEXUS_CIRCUIT_BREAKER_RESET_TIMEOUT | ${String(cb.resetTimeoutMs)} | Reset timeout (ms) |
+`;
+  };
+}
+
+export {
+  parseBoolEnv,
+  createGetTimeout,
+  createGetRetryConfig,
+  createGetRateLimitConfig,
+  createGetCircuitBreakerConfig,
+  createGetToolRateLimit,
+  createGetEnvVarDocumentation
+};
+//# sourceMappingURL=chunk-NESW2TTD.js.map

package/dist/chunk-NESW2TTD.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/config/defaults-env.ts"],"sourcesContent":["/**\n * Environment Variable Override Helpers\n *\n * Provides utilities for reading configuration from environment variables\n * with type-safe fallbacks to defaults.\n *\n * @module config/defaults-env\n */\n\nimport type {\n  CircuitBreakerDefaults,\n  RateLimitDefaults,\n  RetryDefaults,\n  ToolRateLimitConfig,\n} from './defaults-types.js';\n\n// ============================================================================\n// Environment Variable Parsers\n// ============================================================================\n\n/**\n * Parses an integer from an environment variable with fallback.\n */\nexport function parseIntEnv(envKey: string, fallback: number): number {\n  const envValue = process.env[envKey];\n  if (envValue === undefined) {\n    return fallback;\n  }\n  const parsed = parseInt(envValue, 10);\n  return isNaN(parsed) || parsed <= 0 ? fallback : parsed;\n}\n\n/**\n * Parses a float from an environment variable with fallback.\n */\nexport function parseFloatEnv(envKey: string, fallback: number): number {\n  const envValue = process.env[envKey];\n  if (envValue === undefined) {\n    return fallback;\n  }\n  const parsed = parseFloat(envValue);\n  return isNaN(parsed) || !isFinite(parsed) ? fallback : parsed;\n}\n\n/**\n * Parses a boolean from an environment variable with fallback.\n * Only 'true'/'1' are truthy, 'false'/'0' are falsy.\n * Any other value returns the fallback.\n */\nexport function parseBoolEnv(envKey: string, fallback: boolean): boolean {\n  const envValue = process.env[envKey]?.toLowerCase();\n  if (envValue === undefined) {\n    return fallback;\n  }\n  if (envValue === 'true' || envValue === '1') return true;\n  if (envValue === 'false' || envValue === '0') return false;\n  return fallback;\n}\n\n// ============================================================================\n// Config Getter Types (for lazy initialization)\n// ============================================================================\n\n/** Timeout defaults type from DEFAULTS object */\nexport interface TimeoutDefaultsConst {\n  readonly cliMs: number;\n  readonly cliSimpleMs: number;\n  readonly cliComplexMs: number;\n  readonly apiMs: number;\n  readonly apiMaxMs: number;\n  readonly workflowMs: number;\n  readonly workflowMaxMs: number;\n  readonly stepMs: number;\n  readonly mcpMs: number;\n  readonly mcpMaxMs: number;\n  readonly healthCheckMs: number;\n  readonly testGlobalMs: number;\n  readonly testTaskMs: number;\n  readonly circuitBreakerResetMs: number;\n}\n\n/** Tool rate limits type from DEFAULTS object */\nexport interface ToolRateLimitsConst {\n  readonly orchestrate: ToolRateLimitConfig;\n  readonly delegate: ToolRateLimitConfig;\n  readonly workflow: ToolRateLimitConfig;\n  readonly expert: ToolRateLimitConfig;\n}\n\n/** Rate limit defaults type from DEFAULTS object */\ninterface RateLimitDefaultsConst {\n  readonly requestsPerMinute: number;\n  readonly enabled: boolean;\n  readonly maxConcurrent: number;\n  readonly capacity: number;\n  readonly refillRate: number;\n  readonly refillIntervalMs: number;\n}\n\n/** Retry defaults type from DEFAULTS object */\ninterface RetryDefaultsConst {\n  readonly maxRetries: number;\n  readonly baseDelayMs: number;\n  readonly maxDelayMs: number;\n  readonly jitterFactor: number;\n}\n\n/** Circuit breaker defaults type from DEFAULTS object */\ninterface CircuitBreakerDefaultsConst {\n  readonly failureThreshold: number;\n  readonly resetTimeoutMs: number;\n  readonly halfOpenSuccessThreshold: number;\n  readonly countTimeoutsAsFailures: boolean;\n  readonly countAuthFailuresAsFailures: boolean;\n  readonly countRateLimitsAsFailures: boolean;\n  readonly halfOpenMaxRequests: number;\n}\n\n// ============================================================================\n// Config Getter Factory Functions\n// ============================================================================\n\n/**\n * Creates a timeout getter function bound to the DEFAULTS object.\n */\nexport function createGetTimeout(\n  timeoutDefaults: TimeoutDefaultsConst\n): (key: keyof TimeoutDefaultsConst) => number {\n  return (key: keyof TimeoutDefaultsConst): number => {\n    const envKey = `NEXUS_TIMEOUT_${key.replace(/Ms$/, '').toUpperCase()}`;\n    return parseIntEnv(envKey, timeoutDefaults[key]);\n  };\n}\n\n/**\n * Creates a retry config getter function bound to the DEFAULTS object.\n */\nexport function createGetRetryConfig(retryDefaults: RetryDefaultsConst): () => RetryDefaults {\n  return (): RetryDefaults => {\n    return {\n      maxRetries: parseIntEnv('NEXUS_RETRY_MAX_RETRIES', retryDefaults.maxRetries),\n      baseDelayMs: parseIntEnv('NEXUS_RETRY_BASE_DELAY', retryDefaults.baseDelayMs),\n      maxDelayMs: parseIntEnv('NEXUS_RETRY_MAX_DELAY', retryDefaults.maxDelayMs),\n      jitterFactor: parseFloatEnv('NEXUS_RETRY_JITTER', retryDefaults.jitterFactor),\n    };\n  };\n}\n\n/**\n * Creates a rate limit config getter function bound to the DEFAULTS object.\n */\nexport function createGetRateLimitConfig(\n  rateLimitDefaults: RateLimitDefaultsConst\n): () => RateLimitDefaults {\n  return (): RateLimitDefaults => {\n    return {\n      requestsPerMinute: parseIntEnv('NEXUS_RATE_LIMIT_RPM', rateLimitDefaults.requestsPerMinute),\n      enabled: parseBoolEnv('NEXUS_RATE_LIMIT_ENABLED', rateLimitDefaults.enabled),\n      maxConcurrent: parseIntEnv(\n        'NEXUS_RATE_LIMIT_MAX_CONCURRENT',\n        rateLimitDefaults.maxConcurrent\n      ),\n      capacity: parseIntEnv('NEXUS_RATE_LIMIT_CAPACITY', rateLimitDefaults.capacity),\n      refillRate: parseIntEnv('NEXUS_RATE_LIMIT_REFILL_RATE', rateLimitDefaults.refillRate),\n      refillIntervalMs: parseIntEnv(\n        'NEXUS_RATE_LIMIT_REFILL_INTERVAL',\n        rateLimitDefaults.refillIntervalMs\n      ),\n    };\n  };\n}\n\n// createGetWorkerConfig removed in #2977 — see comment in config/defaults.ts.\n\n/**\n * Creates a circuit breaker config getter function bound to the DEFAULTS object.\n */\nexport function createGetCircuitBreakerConfig(\n  cbDefaults: CircuitBreakerDefaultsConst\n): () => CircuitBreakerDefaults {\n  return (): CircuitBreakerDefaults => {\n    return {\n      failureThreshold: parseIntEnv('NEXUS_CIRCUIT_BREAKER_THRESHOLD', cbDefaults.failureThreshold),\n      resetTimeoutMs: parseIntEnv('NEXUS_CIRCUIT_BREAKER_RESET_TIMEOUT', cbDefaults.resetTimeoutMs),\n      halfOpenSuccessThreshold: cbDefaults.halfOpenSuccessThreshold,\n      countTimeoutsAsFailures: cbDefaults.countTimeoutsAsFailures,\n      countAuthFailuresAsFailures: cbDefaults.countAuthFailuresAsFailures,\n      countRateLimitsAsFailures: cbDefaults.countRateLimitsAsFailures,\n      halfOpenMaxRequests: cbDefaults.halfOpenMaxRequests,\n    };\n  };\n}\n\n/**\n * Creates a tool rate limit getter function bound to the DEFAULTS object.\n */\nexport function createGetToolRateLimit(\n  toolRateLimits: ToolRateLimitsConst\n): (tool: keyof ToolRateLimitsConst) => ToolRateLimitConfig {\n  return (tool: keyof ToolRateLimitsConst): ToolRateLimitConfig => {\n    return toolRateLimits[tool];\n  };\n}\n\n// ============================================================================\n// Documentation Helper\n// ============================================================================\n\n/** DEFAULTS structure for documentation generation */\ninterface DefaultsForDocs {\n  readonly TIMEOUT_DEFAULTS: TimeoutDefaultsConst;\n  readonly RATE_LIMIT_DEFAULTS: RateLimitDefaultsConst;\n  readonly RETRY_DEFAULTS: RetryDefaultsConst;\n  readonly CIRCUIT_BREAKER_DEFAULTS: CircuitBreakerDefaultsConst;\n}\n\n/**\n * Creates a documentation generator function bound to the DEFAULTS object.\n *\n * @param defaults - The DEFAULTS object\n * @returns Function that generates environment variable documentation\n */\nexport function createGetEnvVarDocumentation(defaults: DefaultsForDocs): () => string {\n  return (): string => {\n    const t = defaults.TIMEOUT_DEFAULTS;\n    const r = defaults.RATE_LIMIT_DEFAULTS;\n    const rt = defaults.RETRY_DEFAULTS;\n    const cb = defaults.CIRCUIT_BREAKER_DEFAULTS;\n\n    return `# Environment Variable Overrides\n\nAll defaults can be overridden via environment variables using the NEXUS_ prefix.\n\n## Timeouts\n\n| Variable | Default | Description |\n| -------- | ------- | ----------- |\n| NEXUS_TIMEOUT_CLI | ${String(t.cliMs)} | CLI execution timeout (ms) |\n| NEXUS_TIMEOUT_API | ${String(t.apiMs)} | API request timeout (ms) |\n| NEXUS_TIMEOUT_WORKFLOW | ${String(t.workflowMs)} | Workflow timeout (ms) |\n| NEXUS_TIMEOUT_MCP | ${String(t.mcpMs)} | MCP operation timeout (ms) |\n\n## Rate Limits\n\n| Variable | Default | Description |\n| -------- | ------- | ----------- |\n| NEXUS_RATE_LIMIT_RPM | ${String(r.requestsPerMinute)} | Requests per minute |\n| NEXUS_RATE_LIMIT_ENABLED | ${String(r.enabled)} | Enable rate limiting |\n| NEXUS_RATE_LIMIT_CAPACITY | ${String(r.capacity)} | Token bucket capacity |\n\n## Retries\n\n| Variable | Default | Description |\n| -------- | ------- | ----------- |\n| NEXUS_RETRY_MAX_RETRIES | ${String(rt.maxRetries)} | Maximum retry attempts |\n| NEXUS_RETRY_BASE_DELAY | ${String(rt.baseDelayMs)} | Base delay (ms) |\n| NEXUS_RETRY_MAX_DELAY | ${String(rt.maxDelayMs)} | Maximum delay (ms) |\n| NEXUS_RETRY_JITTER | ${String(rt.jitterFactor)} | Jitter factor (0-1) |\n\n## Circuit Breaker\n\n| Variable | Default | Description |\n| -------- | ------- | ----------- |\n| NEXUS_CIRCUIT_BREAKER_THRESHOLD | ${String(cb.failureThreshold)} | Failure threshold |\n| NEXUS_CIRCUIT_BREAKER_RESET_TIMEOUT | ${String(cb.resetTimeoutMs)} | Reset timeout (ms) |\n`;\n  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package/dist/{chunk-MBK6P4VV.js → chunk-RTUZSR4R.js}

@@ -5,7 +5,7 @@ import {
   getErrorMessage,
   getTimeProvider,
   ok
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/cli-adapters/circuit-breaker-types.ts
 var CircuitErrorCode = {
@@ -354,4 +354,4 @@ export {
   CircuitBreakerRegistry,
   mapCliErrorToCategory
 };
-//# sourceMappingURL=chunk-MBK6P4VV.js.map
+//# sourceMappingURL=chunk-RTUZSR4R.js.map

package/dist/{chunk-QXGLZETS.js → chunk-SHSKW5ML.js}

@@ -1,6 +1,6 @@
 import {
   DEFAULTS
-} from "./chunk-PIDABDFE.js";
+} from "./chunk-4A4WPM75.js";
 import {
   resolveInsideRoot
 } from "./chunk-NUBSJGQZ.js";
@@ -10,7 +10,7 @@ import {
 import {
   createAllAdapters,
   probeCli
-} from "./chunk-DNSBKQ7I.js";
+} from "./chunk-BHA6V7GK.js";
 import {
   CliNameSchema,
   DEFAULT_CAPABILITIES,
@@ -26,7 +26,7 @@ import {
   ok,
   symbols,
   writeLine
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 import {
   detectSandbox,
   getLearningDir,
@@ -40,7 +40,7 @@ import {
 } from "./chunk-CH7QIDHQ.js";
 
 // src/version.ts
-var VERSION = true ? "2.92.5" : "dev";
+var VERSION = true ? "2.93.0" : "dev";
 
 // src/config/schemas-core.ts
 import { z } from "zod";
@@ -2096,7 +2096,7 @@ async function runDoctorFix(result) {
   writeLine2("\u2500".repeat(40));
   let fixCount = 0;
   if (!result.dataDirectory.rootExists || result.dataDirectory.subdirectories.some((d) => !d.exists || !d.writable)) {
-    const { runSetup } = await import("./setup-command-ZV6VZLP4.js");
+    const { runSetup } = await import("./setup-command-NBXZ4NGV.js");
     const setupResult = runSetup({
       skipMcp: true,
       skipRules: true,
@@ -2110,7 +2110,7 @@ async function runDoctorFix(result) {
     }
   }
   if (!result.configFile.found) {
-    const { runConfigInitSync } = await import("./setup-config-CYRK4UFF.js");
+    const { runConfigInitSync } = await import("./setup-config-Y4JA5QWO.js");
     const configResult = runConfigInitSync(process.cwd(), false, false);
     if (configResult.success && configResult.created) {
       writeLine2(`\u2713 Generated config: ${configResult.path}`);
@@ -2208,4 +2208,4 @@ export {
   startStdioServer,
   closeServer
 };
-//# sourceMappingURL=chunk-QXGLZETS.js.map
+//# sourceMappingURL=chunk-SHSKW5ML.js.map

package/dist/{chunk-YJUHVQSG.js → chunk-SMGH2B3A.js}

@@ -1,7 +1,7 @@
 import {
   DEFAULT_MODEL_PER_CLI,
   getTimeProvider
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/config/model-availability.ts
 var DEFAULT_TTL_MS = 6e4;
@@ -133,4 +133,4 @@ export {
   resetAvailabilityCache,
   filterAvailableModels
 };
-//# sourceMappingURL=chunk-YJUHVQSG.js.map
+//# sourceMappingURL=chunk-SMGH2B3A.js.map

package/dist/{chunk-ZYYU26YH.js → chunk-SORBJPRA.js}

@@ -1,7 +1,7 @@
 import {
   getRandomProvider,
   getTimeProvider
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/utils/id-utils.ts
 import { randomUUID } from "crypto";
@@ -24,4 +24,4 @@ export {
   generateHyphenId,
   generateUUID
 };
-//# sourceMappingURL=chunk-ZYYU26YH.js.map
+//# sourceMappingURL=chunk-SORBJPRA.js.map

package/dist/{chunk-EI2E43HI.js → chunk-T73G67GT.js}

@@ -2,14 +2,14 @@ import {
   CircuitBreakerRegistry,
   CircuitError,
   mapCliErrorToCategory
-} from "./chunk-MBK6P4VV.js";
+} from "./chunk-RTUZSR4R.js";
 import {
   createLogger,
   err,
   getFallbackChainForCategory,
   getTimeProvider,
   ok
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/cli-adapters/cli-circuit-breaker.ts
 var CATEGORY_TO_FALLBACK = {
@@ -152,4 +152,4 @@ export {
   CliCircuitBreakerIntegration,
   createCliCircuitBreakerIntegration
 };
-//# sourceMappingURL=chunk-EI2E43HI.js.map
+//# sourceMappingURL=chunk-T73G67GT.js.map

package/dist/{chunk-2QJJYCPD.js → chunk-ULBKFMVO.js}

@@ -4,7 +4,7 @@ import {
 import {
   createLogger,
   getTimeProvider
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/mcp/tools/scanner-registry-fetcher.ts
 import { z } from "zod";
@@ -721,4 +721,4 @@ export {
   generateSecurityPlan,
   buildPlanFromAnalysis
 };
-//# sourceMappingURL=chunk-2QJJYCPD.js.map
+//# sourceMappingURL=chunk-ULBKFMVO.js.map

package/dist/{chunk-3TU3RJNK.js → chunk-VSG6RSE6.js}

@@ -9,11 +9,11 @@ import {
   gateWithReputation,
   resolveReputationGatingMode,
   sanitizeInput
-} from "./chunk-VBIAMMZZ.js";
+} from "./chunk-DTFMYM3V.js";
 import {
   createLogger,
   getTimeProvider
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/dogfooding/pr-reviewer-helpers.ts
 import { randomUUID } from "crypto";
@@ -288,4 +288,4 @@ export {
   formatReviewComment,
   createFailedReview
 };
-//# sourceMappingURL=chunk-3TU3RJNK.js.map
+//# sourceMappingURL=chunk-VSG6RSE6.js.map

package/dist/{chunk-DQEREDUW.js → chunk-WU3SUA35.js}

@@ -2,7 +2,7 @@ import {
   createLogger,
   err,
   ok
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/scm/token-resolver.ts
 import { execFile } from "child_process";
@@ -87,4 +87,4 @@ export {
   hasToken,
   getTokenEnvVars
 };
-//# sourceMappingURL=chunk-DQEREDUW.js.map
+//# sourceMappingURL=chunk-WU3SUA35.js.map

package/dist/{chunk-G55LVPNH.js → chunk-XVY3I7JT.js}

@@ -1,12 +1,12 @@
 import {
   getCliForModelId
-} from "./chunk-YJUHVQSG.js";
+} from "./chunk-SMGH2B3A.js";
 import {
   MODEL_IDS,
   createLogger,
   getTimeProvider,
   isRateLimitText
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/pipeline/expert-bridge.ts
 function resolveCliFromModelString(model) {
@@ -24,7 +24,7 @@ async function getMcpConfigPath() {
   if (cachedMcpConfigPath !== null) return cachedMcpConfigPath;
   mcpConfigInitPromise ??= (async () => {
     try {
-      const { generateMcpConfig } = await import("./child-mcp-config-PIDVHWJ7.js");
+      const { generateMcpConfig } = await import("./child-mcp-config-WNISXFYD.js");
       const config = await generateMcpConfig();
       cachedMcpConfigPath = config.configPath;
       cachedMcpConfigCleanup = config.cleanup;
@@ -74,8 +74,8 @@ var routerInitPromise = null;
 async function getRouter() {
   if (cachedRouter !== null) return cachedRouter;
   routerInitPromise ??= (async () => {
-    const { createAllAdapters } = await import("./factory-734UWF4C.js");
-    const { createCompositeRouter } = await import("./composite-router-T2XYCQOU.js");
+    const { createAllAdapters } = await import("./factory-RJTRVII5.js");
+    const { createCompositeRouter } = await import("./composite-router-MQOPXLVV.js");
     const adapters = createAllAdapters();
     if (adapters.size === 0) {
       routerInitPromise = null;
@@ -83,7 +83,7 @@ async function getRouter() {
     }
     cachedRouter = adaptCompositeRouter(createCompositeRouter(adapters));
     try {
-      const { createCliCircuitBreakerIntegration } = await import("./cli-circuit-breaker-HFSOBCPK.js");
+      const { createCliCircuitBreakerIntegration } = await import("./cli-circuit-breaker-6E4E2IU7.js");
       cachedCircuitBreaker = createCliCircuitBreakerIntegration([...adapters.values()]);
     } catch (error) {
       const msg = error instanceof Error ? error.message : String(error);
@@ -188,4 +188,4 @@ export {
   shutdownExpertBridge,
   executeExpert
 };
-//# sourceMappingURL=chunk-G55LVPNH.js.map
+//# sourceMappingURL=chunk-XVY3I7JT.js.map

package/dist/{chunk-P646QQYW.js → chunk-ZOAU7RE4.js}

@@ -1,13 +1,16 @@
 import {
   resolveInsideRoot
 } from "./chunk-NUBSJGQZ.js";
+import {
+  parseBoolEnv
+} from "./chunk-NESW2TTD.js";
 import {
   ParseError,
   SecurityError,
   err,
   getErrorMessage,
   ok
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/cli/research-helpers-synthesize.ts
 import { z } from "zod";
@@ -33,8 +36,7 @@ function announceOnce(path, kind) {
   );
 }
 function scaffoldDisabled() {
-  const v = process.env["NEXUS_NO_SCAFFOLD"];
-  return v === "1" || v === "true";
+  return parseBoolEnv("NEXUS_NO_SCAFFOLD", false);
 }
 function emptyPapersYaml() {
   return stringifyYaml({ schema_version: SCHEMA_VERSION, papers: {} });
@@ -1015,4 +1017,4 @@ export {
   AttributedInsightSchema,
   synthesizeResearch
 };
-//# sourceMappingURL=chunk-P646QQYW.js.map
+//# sourceMappingURL=chunk-ZOAU7RE4.js.map

package/dist/chunk-ZOAU7RE4.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/research-helpers-synthesize.ts","../src/cli/research-helpers-io.ts","../src/cli/research-scaffold.ts","../src/cli/research-alignment-map.ts","../src/research/topic-aliases.ts"],"sourcesContent":["/**\n * Research Synthesis Helper\n *\n * Groups papers by topic cluster and generates structured synthesis\n * summaries with themes, findings, and implementation opportunities.\n *\n * @module cli/research-helpers-synthesize\n * (Source: Issue #1386 — Research Synthesis Pipeline)\n */\n\nimport { z } from 'zod';\nimport { loadPapersRegistry } from './research-helpers-io.js';\nimport type { PapersRegistry } from './research-types.js';\nimport type { Result } from '../core/result.js';\nimport { getErrorMessage } from '../core/index.js';\nimport { TECHNIQUE_IMPLEMENTATION_MAP, FEATURE_GATE_INVENTORY } from './research-alignment-map.js';\nimport { normalizeTopicToCanonical } from '../research/topic-aliases.js';\n\n// =============================================================================\n// TYPES\n// =============================================================================\n\n/** A paper entry from the registry, simplified for synthesis. */\nexport interface SynthesisPaper {\n  readonly id: string;\n  readonly title: string;\n  readonly topics: readonly string[];\n  readonly tags: readonly string[];\n  readonly summary: string;\n  readonly keyFindings: readonly string[];\n  readonly relevance: string;\n  readonly implementationStatus: string;\n  readonly techniquesExtracted: readonly string[];\n  readonly qualityScore: number;\n  readonly evidenceTier: 'high' | 'medium' | 'low';\n  /** Source URI — the paper URL, or `arxiv:<id>` (#2663 provenance). */\n  readonly sourceUri?: string;\n  /** Publication date as recorded in the registry (#2663 provenance). */\n  readonly publicationDate?: string;\n}\n\n/**\n * A reference to a source paper, carried into synthesis output so a\n * cluster is traceable back to its inputs (#2663).\n */\nexport interface SynthesisPaperRef {\n  readonly id: string;\n  readonly title: string;\n  readonly sourceUri?: string;\n}\n\n/**\n * A synthesized insight with its provenance (#2663). `sourcePaperIds` is\n * never empty — every merged claim is attributed. When two papers assert\n * the same finding, BOTH ids appear, so a contradiction is *representable*\n * as multiple attributed sources rather than silently collapsed into one.\n */\nexport interface AttributedInsight {\n  readonly insight: string;\n  readonly sourcePaperIds: readonly string[];\n}\n\n/**\n * Structural enforcement of the #2663 provenance invariant: every\n * synthesized insight must carry at least one source paper id. A doc rule\n * alone is fragile — this Zod schema makes \"no unattributed claim\" a\n * validated guarantee, not a hope.\n */\nexport const AttributedInsightSchema = z.object({\n  insight: z.string().min(1),\n  sourcePaperIds: z.array(z.string().min(1)).min(1),\n});\n\n/** A cluster of related papers grouped by topic. */\nexport interface PaperCluster {\n  readonly topic: string;\n  readonly papers: readonly SynthesisPaper[];\n  readonly paperCount: number;\n}\n\n/** A technique aligned to an existing implementation. */\nexport interface TechniqueAlignment {\n  readonly technique: string;\n  readonly status: 'implemented' | 'partial' | 'not-started';\n  readonly canonicalPath?: string | undefined;\n  readonly improvementHint?: string | undefined;\n}\n\n/** Quality distribution within a cluster. */\nexport interface QualityDistribution {\n  readonly avgScore: number;\n  readonly high: number;\n  readonly medium: number;\n  readonly low: number;\n}\n\n/** Synthesis output for a single topic cluster. */\nexport interface ClusterSynthesis {\n  readonly topic: string;\n  readonly paperCount: number;\n  readonly papers: readonly SynthesisPaperRef[];\n  readonly commonThemes: readonly string[];\n  readonly keyInsights: readonly AttributedInsight[];\n  readonly techniques: readonly string[];\n  readonly implementationOpportunities: readonly string[];\n  readonly gaps: readonly string[];\n  readonly alignedTechniques: readonly TechniqueAlignment[];\n  readonly qualityDistribution: QualityDistribution;\n}\n\n/** Summary of alignment between research and implementation. */\nexport interface AlignmentSummary {\n  readonly implemented: number;\n  readonly partial: number;\n  readonly notStarted: number;\n  readonly total: number;\n  readonly topOpportunities: readonly string[];\n}\n\n/** Summary of a single feature gate for synthesis output. */\nexport interface FeatureGateStatus {\n  readonly envVar: string;\n  readonly defaultValue: string;\n  readonly description: string;\n  readonly linkedTechniqueCount: number;\n}\n\n/** Full synthesis result across all clusters. */\nexport interface SynthesisResult {\n  readonly clusters: readonly ClusterSynthesis[];\n  readonly totalPapers: number;\n  readonly topicCount: number;\n  readonly crossCuttingThemes: readonly string[];\n  readonly alignmentSummary: AlignmentSummary;\n  readonly featureGates: readonly FeatureGateStatus[];\n}\n\n/** Error for synthesis operations. */\nexport interface SynthesisError {\n  readonly code: 'LOAD_ERROR' | 'NO_PAPERS';\n  readonly message: string;\n}\n\n// =============================================================================\n// CONSTANTS\n// =============================================================================\n\n/** Minimum papers in a cluster to generate cross-cutting themes. */\nconst MIN_CROSS_CUTTING_CLUSTER_SIZE = 2;\n\n/** Tags that appear across many topics and indicate cross-cutting themes. */\nconst CROSS_CUTTING_TAG_THRESHOLD = 3;\n\n// =============================================================================\n// PUBLIC API\n// =============================================================================\n\n/**\n * Synthesize the research registry by grouping papers into topic clusters\n * and generating structured summaries.\n *\n * @param topicFilter - Optional topic to filter to a single cluster\n * @returns Structured synthesis result\n */\nexport async function synthesizeResearch(\n  topicFilter?: string\n): Promise<Result<SynthesisResult, SynthesisError>> {\n  const registryResult = await loadPapersRegistry();\n  if (!registryResult.ok) {\n    return {\n      ok: false,\n      error: {\n        code: 'LOAD_ERROR',\n        message: `Failed to load papers: ${getErrorMessage(registryResult.error)}`,\n      },\n    };\n  }\n\n  const papers = extractPapers(registryResult.value);\n  if (papers.length === 0) {\n    return {\n      ok: false,\n      error: { code: 'NO_PAPERS', message: 'No papers found in registry' },\n    };\n  }\n\n  const clusters = groupByTopic(papers);\n  const filtered =\n    topicFilter !== undefined ? clusters.filter((c) => c.topic === topicFilter) : clusters;\n\n  const syntheses = filtered.map(synthesizeCluster);\n  const crossCutting = findCrossCuttingThemes(filtered);\n  const alignmentSummary = buildAlignmentSummary(syntheses);\n  const featureGates = buildFeatureGateSummary();\n\n  return {\n    ok: true,\n    value: {\n      clusters: syntheses,\n      totalPapers: papers.length,\n      topicCount: filtered.length,\n      crossCuttingThemes: crossCutting,\n      alignmentSummary,\n      featureGates,\n    },\n  };\n}\n\n// =============================================================================\n// EXTRACTION\n// =============================================================================\n\n/**\n * Safely convert a field that types say is `readonly string[]` but may be\n * null/undefined at runtime (YAML parsing of empty array fields).\n */\nfunction safeArray(value: readonly string[]): string[] {\n  // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition -- YAML parsing can yield null despite type\n  if (value === null || value === undefined) return [];\n  return Array.from(value);\n}\n\n/** Extract papers from the registry structure. */\n/** Source URI for a paper: prefer the URL, else `arxiv:<id>` (#2663). */\nfunction paperSourceUri(p: PapersRegistry['papers'][string]): string | undefined {\n  if (typeof p.url === 'string' && p.url.length > 0) return p.url;\n  if (typeof p.arxiv_id === 'string' && p.arxiv_id.length > 0) return `arxiv:${p.arxiv_id}`;\n  return undefined;\n}\n\nfunction extractPapers(registry: PapersRegistry): SynthesisPaper[] {\n  return Object.entries(registry.papers).map(([id, p]) => {\n    const sourceUri = paperSourceUri(p);\n    return {\n      id,\n      title: p.title,\n      topics: safeArray(p.topics),\n      tags: safeArray(p.tags),\n      summary: p.summary.trim(),\n      keyFindings: safeArray(p.key_findings),\n      relevance: p.relevance,\n      implementationStatus: p.implementation_status,\n      techniquesExtracted: safeArray(p.techniques_extracted),\n      qualityScore: p.quality_score ?? 0,\n      evidenceTier: p.evidence_tier ?? 'low',\n      // #2663 — carry provenance from the registry into synthesis.\n      ...(sourceUri !== undefined ? { sourceUri } : {}),\n      ...(typeof p.publication_date === 'string' ? { publicationDate: p.publication_date } : {}),\n    };\n  });\n}\n\n// =============================================================================\n// GROUPING\n// =============================================================================\n\n/** Group papers by primary topic into clusters, normalizing free-form topics. */\nfunction groupByTopic(papers: readonly SynthesisPaper[]): PaperCluster[] {\n  const topicMap = new Map<string, SynthesisPaper[]>();\n\n  for (const paper of papers) {\n    for (const rawTopic of paper.topics) {\n      const topic = normalizeTopicToCanonical(rawTopic);\n      const existing = topicMap.get(topic);\n      if (existing !== undefined) {\n        existing.push(paper);\n      } else {\n        topicMap.set(topic, [paper]);\n      }\n    }\n  }\n\n  const clusters: PaperCluster[] = [];\n  for (const [topic, unsortedPapers] of topicMap) {\n    // Sort papers within cluster by quality_score descending (high-quality first)\n    const topicPapers = [...unsortedPapers].sort((a, b) => b.qualityScore - a.qualityScore);\n    clusters.push({\n      topic,\n      papers: topicPapers,\n      paperCount: topicPapers.length,\n    });\n  }\n\n  return clusters.sort((a, b) => b.paperCount - a.paperCount);\n}\n\n// =============================================================================\n// SYNTHESIS\n// =============================================================================\n\n/** Generate synthesis for a single topic cluster. */\n/** Compute quality score distribution for a set of papers. */\nfunction computeClusterQuality(papers: readonly SynthesisPaper[]): QualityDistribution {\n  const scores = papers.map((p) => p.qualityScore);\n  const totalScore = scores.reduce((sum, s) => sum + s, 0);\n  return {\n    avgScore: scores.length > 0 ? Math.round((totalScore / scores.length) * 10) / 10 : 0,\n    high: papers.filter((p) => p.evidenceTier === 'high').length,\n    medium: papers.filter((p) => p.evidenceTier === 'medium').length,\n    low: papers.filter((p) => p.evidenceTier === 'low').length,\n  };\n}\n\nfunction synthesizeCluster(cluster: PaperCluster): ClusterSynthesis {\n  const allTags = collectFrequencies(cluster.papers.flatMap((p) => [...p.tags]));\n  const allTechniques = collectFrequencies(\n    cluster.papers.flatMap((p) => [...p.techniquesExtracted])\n  );\n\n  // Common themes: tags that appear in 2+ papers\n  const commonThemes = [...allTags.entries()]\n    .filter(([, count]) => count >= MIN_CROSS_CUTTING_CLUSTER_SIZE)\n    .sort((a, b) => b[1] - a[1])\n    .map(([tag]) => tag);\n\n  // Techniques across the cluster\n  const techniques = [...allTechniques.entries()]\n    .sort((a, b) => b[1] - a[1])\n    .map(([tech, count]) => (count > 1 ? `${tech} (${String(count)} papers)` : tech));\n\n  // Implementation opportunities: techniques not yet implemented\n  const notStarted = cluster.papers\n    .filter((p) => p.implementationStatus === 'not-started')\n    .flatMap((p) => [...p.techniquesExtracted]);\n  const uniqueOpportunities = [...new Set(notStarted)];\n\n  // Gaps: topics with few papers or missing techniques\n  const gaps: string[] = [];\n  if (cluster.paperCount === 1) {\n    gaps.push(`Only 1 paper — more research needed on ${cluster.topic}`);\n  }\n  const highRelevanceUnimplemented = cluster.papers.filter(\n    (p) => p.relevance === 'high' && p.implementationStatus === 'not-started'\n  );\n  if (highRelevanceUnimplemented.length > 0) {\n    gaps.push(\n      `${String(highRelevanceUnimplemented.length)} high-relevance paper(s) not yet implemented`\n    );\n  }\n\n  // Alignment analysis: map techniques to existing implementations\n  const allTechNames = [...allTechniques.keys()];\n  const alignedTechniques = analyzeClusterAlignment(allTechNames);\n\n  const qualityDistribution = computeClusterQuality(cluster.papers);\n\n  // Add quality gap if most papers are low-quality\n  if (qualityDistribution.low > qualityDistribution.high + qualityDistribution.medium) {\n    gaps.push(\n      `Mostly low-evidence papers (${String(qualityDistribution.low)}/${String(cluster.paperCount)}) — findings need stronger validation`\n    );\n  }\n\n  return {\n    topic: cluster.topic,\n    paperCount: cluster.paperCount,\n    papers: cluster.papers.map(toPaperRef),\n    commonThemes,\n    keyInsights: attributeFindings(cluster.papers).slice(0, 10),\n    techniques,\n    implementationOpportunities: uniqueOpportunities,\n    gaps,\n    alignedTechniques,\n    qualityDistribution,\n  };\n}\n\n/** Find themes that span multiple topic clusters. */\nfunction findCrossCuttingThemes(clusters: readonly PaperCluster[]): string[] {\n  const tagToTopics = new Map<string, Set<string>>();\n\n  for (const cluster of clusters) {\n    for (const paper of cluster.papers) {\n      for (const tag of paper.tags) {\n        const existing = tagToTopics.get(tag);\n        if (existing !== undefined) {\n          existing.add(cluster.topic);\n        } else {\n          tagToTopics.set(tag, new Set([cluster.topic]));\n        }\n      }\n    }\n  }\n\n  return [...tagToTopics.entries()]\n    .filter(([, topics]) => topics.size >= CROSS_CUTTING_TAG_THRESHOLD)\n    .sort((a, b) => b[1].size - a[1].size)\n    .map(([tag, topics]) => `${tag} (spans: ${[...topics].join(', ')})`);\n}\n\n// =============================================================================\n// ALIGNMENT ANALYSIS\n// =============================================================================\n\n/** Analyze technique alignment for a cluster. */\nfunction analyzeClusterAlignment(techniques: readonly string[]): TechniqueAlignment[] {\n  const alignments: TechniqueAlignment[] = [];\n\n  for (const tech of techniques) {\n    // Strip count annotation like \"technique (2 papers)\"\n    const baseTech = tech.replace(/\\s*\\(\\d+\\s*papers?\\)$/, '');\n    const mapping = TECHNIQUE_IMPLEMENTATION_MAP.get(baseTech);\n\n    if (mapping !== undefined) {\n      alignments.push({\n        technique: baseTech,\n        status: mapping.status,\n        canonicalPath: mapping.path,\n        ...(mapping.hint !== undefined ? { improvementHint: mapping.hint } : {}),\n      });\n    } else {\n      alignments.push({ technique: baseTech, status: 'not-started' });\n    }\n  }\n\n  return alignments;\n}\n\n/** Build alignment summary across all clusters. */\nfunction buildAlignmentSummary(clusters: readonly ClusterSynthesis[]): AlignmentSummary {\n  const allAlignments = clusters.flatMap((c) => c.alignedTechniques);\n  const implemented = allAlignments.filter((a) => a.status === 'implemented').length;\n  const partial = allAlignments.filter((a) => a.status === 'partial').length;\n  const notStarted = allAlignments.filter((a) => a.status === 'not-started').length;\n\n  // Top opportunities: partial implementations with hints (most improvable)\n  const opportunities = allAlignments\n    .filter((a) => a.status === 'partial' && a.improvementHint !== undefined)\n    .map((a) => `${a.technique}: ${a.improvementHint ?? ''}`)\n    .slice(0, 10);\n\n  return {\n    implemented,\n    partial,\n    notStarted,\n    total: allAlignments.length,\n    topOpportunities: opportunities,\n  };\n}\n\n/** Build feature gate summary from the inventory. */\nfunction buildFeatureGateSummary(): FeatureGateStatus[] {\n  return FEATURE_GATE_INVENTORY.map((g) => ({\n    envVar: g.envVar,\n    defaultValue: g.defaultValue,\n    description: g.description,\n    linkedTechniqueCount: g.techniques?.length ?? 0,\n  }));\n}\n\n// =============================================================================\n// UTILITIES\n// =============================================================================\n\nfunction collectFrequencies(items: readonly string[]): Map<string, number> {\n  const counts = new Map<string, number>();\n  for (const item of items) {\n    counts.set(item, (counts.get(item) ?? 0) + 1);\n  }\n  return counts;\n}\n\n/** Project a source paper to the lean reference carried into output (#2663). */\nfunction toPaperRef(p: SynthesisPaper): SynthesisPaperRef {\n  return {\n    id: p.id,\n    title: p.title,\n    ...(p.sourceUri !== undefined ? { sourceUri: p.sourceUri } : {}),\n  };\n}\n\n/**\n * Deduplicate findings across a cluster's papers WHILE preserving\n * provenance (#2663). Findings are keyed by normalized text; when two\n * papers assert the same finding, both ids are collected — so a\n * contradiction is representable as multiple attributed sources rather\n * than silently collapsed. Every returned insight is validated to carry\n * at least one source id (`AttributedInsightSchema`).\n */\nfunction attributeFindings(papers: readonly SynthesisPaper[]): AttributedInsight[] {\n  const byNormalized = new Map<string, { insight: string; sourcePaperIds: Set<string> }>();\n  for (const paper of papers) {\n    for (const finding of paper.keyFindings) {\n      const normalized = finding.toLowerCase().trim();\n      if (normalized.length === 0) continue;\n      const existing = byNormalized.get(normalized);\n      if (existing !== undefined) {\n        existing.sourcePaperIds.add(paper.id);\n      } else {\n        byNormalized.set(normalized, {\n          insight: finding,\n          sourcePaperIds: new Set([paper.id]),\n        });\n      }\n    }\n  }\n  return [...byNormalized.values()].map((e) =>\n    AttributedInsightSchema.parse({ insight: e.insight, sourcePaperIds: [...e.sourcePaperIds] })\n  );\n}\n","/**\n * Research Registry I/O Operations\n *\n * File operations for loading and saving research registry YAML files.\n * Includes path traversal protection per Issue #353.\n *\n * @see docs/research/RESEARCH_INDEX.md\n * @see Issue #237 (Epic #225)\n * @see Issue #353 (Security - Path traversal fix)\n */\n\nimport * as fs from 'node:fs/promises';\nimport { join, resolve } from 'node:path';\nimport { resolveInsideRoot } from '../security/safe-path.js';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\nimport type { Result } from '../core/index.js';\nimport { SecurityError, getErrorMessage } from '../core/index.js';\nimport { ParseError } from '../core/types/workflow.js';\nimport type { TechniquesRegistry, PapersRegistry } from './research-types.js';\nimport { ensureRegistryFile } from './research-scaffold.js';\n\n// =============================================================================\n// CONSTANTS\n// =============================================================================\n\n/** Path to research registry directory relative to project root */\nexport const REGISTRY_PATH = 'docs/research/registry';\n\n/** Filename for techniques registry */\nexport const TECHNIQUES_FILE = 'techniques.yaml';\n\n/** Filename for papers registry */\nexport const PAPERS_FILE = 'papers.yaml';\n\n// =============================================================================\n// PROJECT ROOT\n// =============================================================================\n\n/**\n * Get the project root directory.\n * Note: Returns cwd since registry operations use explicit rootDir parameter\n */\nexport function getProjectRoot(): string {\n  return process.cwd();\n}\n\n// =============================================================================\n// PATH VALIDATION\n// =============================================================================\n\n/**\n * Validates that a constructed path stays within the allowed root directory.\n * Prevents path traversal attacks (e.g., ../../../etc/passwd).\n *\n * @param constructedPath - The full path to validate\n * @param allowedRoot - The root directory that paths must be within\n * @returns Result with validated absolute path or SecurityError\n */\nfunction validatePath(constructedPath: string, allowedRoot: string): Result<string, SecurityError> {\n  const resolved = resolveInsideRoot(constructedPath, allowedRoot);\n  if (resolved === null) {\n    return {\n      ok: false,\n      error: new SecurityError('Path traversal detected: path escapes allowed root directory', {\n        context: { constructedPath, allowedRoot: resolve(allowedRoot) },\n      }),\n    };\n  }\n  return { ok: true, value: resolved };\n}\n\n// =============================================================================\n// LOAD OPERATIONS\n// =============================================================================\n\n/**\n * Load techniques registry from YAML file.\n * Validates path to prevent directory traversal attacks.\n *\n * @param rootDir - Project root directory (defaults to cwd)\n * @returns Result with TechniquesRegistry or SecurityError/ParseError\n */\nexport async function loadTechniquesRegistry(\n  rootDir?: string\n): Promise<Result<TechniquesRegistry, SecurityError | ParseError>> {\n  const root = rootDir ?? process.cwd();\n  const filePath = join(root, REGISTRY_PATH, TECHNIQUES_FILE);\n\n  const pathValidation = validatePath(filePath, root);\n  if (!pathValidation.ok) {\n    return pathValidation;\n  }\n\n  // #2470: try to scaffold an empty techniques.yaml on first run so research_*\n  // workflows don't error on a fresh install. No-op when file exists.\n  // When scaffold refuses (e.g. <rootDir>/docs/ doesn't exist, or\n  // NEXUS_NO_SCAFFOLD=1), fall through and let readFile produce the original\n  // ENOENT error — that's the existing contract.\n  await ensureRegistryFile(root, TECHNIQUES_FILE);\n\n  try {\n    const content = await fs.readFile(pathValidation.value, 'utf-8');\n    return { ok: true, value: parseYaml(content) as TechniquesRegistry };\n  } catch (error) {\n    const message = getErrorMessage(error);\n    return { ok: false, error: new ParseError(`Failed to load techniques registry: ${message}`) };\n  }\n}\n\n/**\n * Load papers registry from YAML file.\n * Validates path to prevent directory traversal attacks.\n *\n * @param rootDir - Project root directory (defaults to cwd)\n * @returns Result with PapersRegistry or SecurityError/ParseError\n */\nexport async function loadPapersRegistry(\n  rootDir?: string\n): Promise<Result<PapersRegistry, SecurityError | ParseError>> {\n  const root = rootDir ?? process.cwd();\n  const filePath = join(root, REGISTRY_PATH, PAPERS_FILE);\n\n  const pathValidation = validatePath(filePath, root);\n  if (!pathValidation.ok) {\n    return pathValidation;\n  }\n\n  // #2470: try to scaffold an empty papers.yaml on first run so research_*\n  // workflows don't error on a fresh install. No-op when file exists; falls\n  // through silently when scaffold refuses (no docs/ root, or NEXUS_NO_SCAFFOLD).\n  await ensureRegistryFile(root, PAPERS_FILE);\n\n  try {\n    const content = await fs.readFile(pathValidation.value, 'utf-8');\n    return { ok: true, value: parseYaml(content) as PapersRegistry };\n  } catch (error) {\n    const message = getErrorMessage(error);\n    return { ok: false, error: new ParseError(`Failed to load papers registry: ${message}`) };\n  }\n}\n\n// =============================================================================\n// SAVE OPERATIONS\n// =============================================================================\n\n/**\n * Save techniques registry to YAML file.\n * Validates path to prevent directory traversal attacks.\n *\n * @param registry - The techniques registry to save\n * @param rootDir - Project root directory (defaults to cwd)\n * @returns Result with void on success or SecurityError/ParseError on failure\n */\nexport async function saveTechniquesRegistry(\n  registry: TechniquesRegistry,\n  rootDir?: string\n): Promise<Result<void, SecurityError | ParseError>> {\n  const root = rootDir ?? process.cwd();\n  const filePath = join(root, REGISTRY_PATH, TECHNIQUES_FILE);\n\n  const pathValidation = validatePath(filePath, root);\n  if (!pathValidation.ok) {\n    return pathValidation;\n  }\n\n  try {\n    const content = stringifyYaml(registry, { lineWidth: 100 });\n    await fs.writeFile(pathValidation.value, content, 'utf-8');\n    return { ok: true, value: undefined };\n  } catch (error) {\n    const message = getErrorMessage(error);\n    return { ok: false, error: new ParseError(`Failed to save techniques registry: ${message}`) };\n  }\n}\n\n/**\n * Save papers registry to YAML file.\n * Validates path to prevent directory traversal attacks.\n *\n * @param registry - The papers registry to save\n * @param rootDir - Project root directory (defaults to cwd)\n * @returns Result with void on success or SecurityError/ParseError on failure\n */\nexport async function savePapersRegistry(\n  registry: PapersRegistry,\n  rootDir?: string\n): Promise<Result<void, SecurityError | ParseError>> {\n  const root = rootDir ?? process.cwd();\n  const filePath = join(root, REGISTRY_PATH, PAPERS_FILE);\n\n  const pathValidation = validatePath(filePath, root);\n  if (!pathValidation.ok) {\n    return pathValidation;\n  }\n\n  try {\n    const content = stringifyYaml(registry, { lineWidth: 100 });\n    await fs.writeFile(pathValidation.value, content, 'utf-8');\n    return { ok: true, value: undefined };\n  } catch (error) {\n    const message = getErrorMessage(error);\n    return { ok: false, error: new ParseError(`Failed to save papers registry: ${message}`) };\n  }\n}\n","/**\n * research-scaffold — auto-create empty research registry files when missing.\n *\n * On a fresh install or in a sandboxed environment where the project doesn't\n * have `docs/research/registry/`, the research workflows previously errored\n * with `Failed to load papers registry: ENOENT`. The user has no idea what\n * to do.\n *\n * This module provides `ensureResearchRegistry()`: idempotent scaffolding\n * that creates empty YAML registries on ENOENT, announces what it did to\n * stderr (so the operator knows), and returns the path that's now safe to\n * read.\n *\n * Source: Issue #2470 (epic #2467 child).\n */\n\nimport * as fs from 'node:fs/promises';\nimport { existsSync } from 'node:fs';\nimport { dirname, resolve } from 'node:path';\nimport { stringify as stringifyYaml } from 'yaml';\n\nimport type { Result } from '../core/index.js';\nimport { ok, err, getErrorMessage } from '../core/index.js';\nimport { ParseError } from '../core/types/workflow.js';\n\nimport { REGISTRY_PATH, PAPERS_FILE, TECHNIQUES_FILE } from './research-helpers-io.js';\nimport { parseBoolEnv } from '../config/defaults-env.js';\n\n/**\n * Names of the registry files this scaffolder knows how to create.\n * `sources.yaml` and `alignments.yaml` live alongside but are populated by\n * different code paths; this scaffolder only owns the two YAML registries\n * that block `research_query` / `research_synthesize` on a fresh install.\n */\ntype ScaffoldedFile = typeof PAPERS_FILE | typeof TECHNIQUES_FILE;\n\nconst SCHEMA_VERSION = '1.0';\n\nconst ANNOUNCED = new Set<string>();\n\nfunction announceOnce(path: string, kind: ScaffoldedFile): void {\n  // De-dupe so that running multiple research commands in one session\n  // produces one announcement per scaffolded file, not per call.\n  if (ANNOUNCED.has(path)) return;\n  ANNOUNCED.add(path);\n  process.stderr.write(\n    `[scaffold] Created empty ${kind} at ${path}; add entries via 'nexus-agents research add' or research_add MCP tool.\\n`\n  );\n}\n\n/**\n * Operator opt-out. When set, scaffolding errors loudly with an actionable\n * message instead of silently writing files. Useful for CI and for\n * environments that want strict \"fail when state is wrong\" semantics.\n */\nfunction scaffoldDisabled(): boolean {\n  return parseBoolEnv('NEXUS_NO_SCAFFOLD', false);\n}\n\nfunction emptyPapersYaml(): string {\n  return stringifyYaml({ schema_version: SCHEMA_VERSION, papers: {} });\n}\n\nfunction emptyTechniquesYaml(): string {\n  return stringifyYaml({ schema_version: SCHEMA_VERSION, techniques: {} });\n}\n\n/**\n * Create the registry directory + an empty YAML file if either is missing.\n * Idempotent: existing files are left untouched.\n *\n * Scaffolds only when `<rootDir>/docs/` already exists. That guard keeps\n * tests, vitest's package cwd, and random scratch directories from getting\n * a `docs/research/` subtree implicitly. Operators on a real project root\n * (which always has `docs/`, either from cloning the repo or running\n * `nexus-agents init`) still get the auto-create behavior the issue asks for.\n *\n * Returns the resolved file path on success, or a ParseError when scaffolding\n * is disabled / refused (so the caller can pass the error through unchanged\n * for backwards compat with existing call sites).\n */\nexport async function ensureRegistryFile(\n  rootDir: string,\n  filename: ScaffoldedFile\n): Promise<Result<string, ParseError>> {\n  const filePath = resolve(rootDir, REGISTRY_PATH, filename);\n\n  if (existsSync(filePath)) return ok(filePath);\n\n  if (scaffoldDisabled()) {\n    return err(\n      new ParseError(\n        `Registry file missing: ${filePath}. Scaffolding disabled (NEXUS_NO_SCAFFOLD=1). Create the file manually or unset the env var.`\n      )\n    );\n  }\n\n  // Refuse to create a docs/ subtree in directories that aren't already\n  // documented project roots. The presence of `<rootDir>/docs/` is the\n  // strong signal we use.\n  if (!existsSync(resolve(rootDir, 'docs'))) {\n    return err(\n      new ParseError(\n        `Registry file missing: ${filePath}. ${rootDir}/docs/ does not exist; ` +\n          `refusing to create a Nexus subtree in a non-documented root. ` +\n          `Run 'nexus-agents init' first, or create ${rootDir}/docs/ manually.`\n      )\n    );\n  }\n\n  try {\n    await fs.mkdir(dirname(filePath), { recursive: true });\n    const content = filename === PAPERS_FILE ? emptyPapersYaml() : emptyTechniquesYaml();\n    await fs.writeFile(filePath, content, 'utf-8');\n    announceOnce(filePath, filename);\n    return ok(filePath);\n  } catch (e: unknown) {\n    return err(\n      new ParseError(\n        `Failed to scaffold ${filename} at ${filePath}: ${getErrorMessage(e)}. Set NEXUS_NO_SCAFFOLD=1 and create manually if scaffolding is unwanted.`\n      )\n    );\n  }\n}\n\n/**\n * Convenience: scaffold both papers.yaml and techniques.yaml. Used by the\n * research workflow startup paths that need both registries available.\n */\nexport async function ensureResearchRegistry(rootDir?: string): Promise<Result<void, ParseError>> {\n  const root = rootDir ?? process.cwd();\n  const papers = await ensureRegistryFile(root, PAPERS_FILE);\n  if (!papers.ok) return papers;\n  const techniques = await ensureRegistryFile(root, TECHNIQUES_FILE);\n  if (!techniques.ok) return techniques;\n  return ok(undefined);\n}\n\n/**\n * Test-only reset of the announcement de-dupe set. Production code never\n * needs this; tests do because Vitest reuses process state across files.\n */\nexport function _resetAnnouncedForTests(): void {\n  ANNOUNCED.clear();\n}\n","/**\n * Research Alignment Map\n *\n * Maps technique names from the research registry to canonical code paths\n * in the nexus-agents codebase. Used by research synthesis to determine\n * which paper techniques are implemented, partially implemented, or new.\n *\n * @module cli/research-alignment-map\n * (Source: Issue #1386 — Research Synthesis Pipeline)\n */\n\n// =============================================================================\n// TYPES\n// =============================================================================\n\n/** Implementation status for a mapped technique. */\nexport interface TechniqueMapping {\n  readonly status: 'implemented' | 'partial';\n  readonly path: string;\n  readonly hint?: string | undefined;\n}\n\n/** A feature gate that controls an implementation. */\nexport interface FeatureGate {\n  /** Environment variable or config key. */\n  readonly envVar: string;\n  /** Default value when not explicitly set. */\n  readonly defaultValue: string;\n  /** Brief description of what the gate controls. */\n  readonly description: string;\n  /** Related technique names from the alignment map (if any). */\n  readonly techniques?: readonly string[];\n}\n\n// =============================================================================\n// MAP\n// =============================================================================\n\n/**\n * Maps technique names to canonical code paths.\n * 'implemented' = full implementation exists matching the technique.\n * 'partial' = related code exists but doesn't fully implement the technique.\n */\nexport const TECHNIQUE_IMPLEMENTATION_MAP: ReadonlyMap<string, TechniqueMapping> = new Map([\n  // Routing techniques\n  ['linucb-routing', { status: 'implemented', path: 'cli-adapters/linucb-bandit.ts' }],\n  ['topsis-routing', { status: 'implemented', path: 'cli-adapters/topsis-router.ts' }],\n  [\n    'cascade-routing',\n    { status: 'implemented', path: 'routing/stages/confidence-cascade-stage.ts' },\n  ],\n  [\n    'complexity-based-routing',\n    { status: 'implemented', path: 'routing/stages/confidence-cascade-stage.ts' },\n  ],\n  [\n    'moe-routing',\n    {\n      status: 'implemented',\n      path: 'cli-adapters/composite-router.ts',\n      hint: '5-stage composite routing selects among specialized CLI experts based on task features',\n    },\n  ],\n  ['two-stage-routing', { status: 'implemented', path: 'cli-adapters/composite-router-stages.ts' }],\n  [\n    'capability-instruction-tuning',\n    {\n      status: 'partial',\n      path: 'routing/stages/capability-match-stage.ts',\n      hint: 'Static capability profiles, not instruction-tuned',\n    },\n  ],\n  [\n    'knn-routing',\n    {\n      status: 'implemented',\n      path: 'routing/stages/knn-routing-stage.ts',\n      hint: 'KnnRoutingStage: cosine similarity over keyword vectors, K-nearest experience patterns, weighted by success rate',\n    },\n  ],\n  ['pilot-budget-routing', { status: 'implemented', path: 'cli-adapters/budget-router.ts' }],\n  [\n    'tolerance-routing',\n    {\n      status: 'implemented',\n      path: 'cli-adapters/composite-router-helpers.ts',\n      hint: 'TOPSIS_TOLERANCE_BAND_PERCENT (5%) identifies quality-equivalent candidates after TOPSIS ranking',\n    },\n  ],\n  [\n    'sater-routing',\n    {\n      status: 'implemented',\n      path: 'routing/stages/quality-constraint-stage.ts',\n      hint: 'QualityConstraintStage filters models by min quality (0.7), max cost, max latency before selection',\n    },\n  ],\n  [\n    'preference-trained-routing',\n    { status: 'implemented', path: 'cli-adapters/preference-router.ts' },\n  ],\n  [\n    'strmac-state-routing',\n    {\n      status: 'implemented',\n      path: 'context/routing-memory.ts',\n      hint: 'RoutingMemory maintains state across calls (profile, experience, action cache) feeding LinUCB + weather bonus stages',\n    },\n  ],\n  [\n    'cross-attention-routing',\n    {\n      status: 'implemented',\n      path: 'routing/stages/capability-match-stage.ts',\n      hint: 'AttentionMatrix maps task features to capability weights (configurable cross-attention)',\n    },\n  ],\n\n  // Consensus techniques\n  ['consensus-protocol', { status: 'implemented', path: 'consensus/engine.ts' }],\n  ['majority-voting', { status: 'implemented', path: 'consensus/engine.ts' }],\n  ['higher-order-voting', { status: 'implemented', path: 'consensus/higher-order-strategy.ts' }],\n  [\n    'anti-conformity-weighting',\n    { status: 'implemented', path: 'consensus/higher-order-strategy.ts' },\n  ],\n  [\n    'agreement-based-cascading',\n    {\n      status: 'implemented',\n      path: 'consensus/engine.ts',\n      hint: 'canCascadeEarly() closes proposals when outcome is mathematically determined',\n    },\n  ],\n  [\n    'incremental-quorum',\n    {\n      status: 'implemented',\n      path: 'consensus/incremental-quorum.ts',\n      hint: 'Ambiguity detection + voter expansion via VoterExpansionCallback (#1408)',\n    },\n  ],\n  [\n    'aegean-consensus',\n    { status: 'partial', path: 'consensus/engine.ts', hint: 'Byzantine tolerance not implemented' },\n  ],\n  [\n    'cp-wbft-consensus',\n    {\n      status: 'partial',\n      path: 'consensus/engine.ts',\n      hint: 'No weighted Byzantine fault tolerance',\n    },\n  ],\n\n  // Memory techniques\n  ['adaptive-memory', { status: 'implemented', path: 'memory/adaptive/' }],\n  ['mirix-six-type-memory', { status: 'implemented', path: 'memory/typed/' }],\n  [\n    'mem0-memory-architecture',\n    { status: 'partial', path: 'memory/', hint: 'Multi-backend memory but not mem0 pattern' },\n  ],\n  [\n    'graph-based-memory',\n    {\n      status: 'partial',\n      path: 'memory/belief/',\n      hint: 'Belief triples are graph-like but not full graph DB',\n    },\n  ],\n  ['experience-memory', { status: 'implemented', path: 'memory/session/' }],\n  ['hindsight-belief-memory', { status: 'implemented', path: 'memory/belief/' }],\n  [\n    'profile-memory',\n    {\n      status: 'implemented',\n      path: 'context/routing-memory.ts',\n      hint: 'RoutingMemory stores model preferences per task type and feeds recommendations into composite router via PERSISTENCE_AWARE_FLAGS',\n    },\n  ],\n  [\n    'action-memory',\n    {\n      status: 'implemented',\n      path: 'orchestration/outcomes/',\n      hint: 'OutcomeStore records actions+results+context with query-by-category/CLI/time and cross-session persistence',\n    },\n  ],\n  ['reflection-memory', { status: 'implemented', path: 'mcp/tools/orchestrate-reflection.ts' }],\n  [\n    'history-encoding',\n    {\n      status: 'partial',\n      path: 'context/token-counter.ts',\n      hint: 'Token counting exists but no learned history encoding',\n    },\n  ],\n\n  // Orchestration techniques\n  [\n    'aflow-mcts-workflows',\n    {\n      status: 'partial',\n      path: 'workflows/aflow/',\n      hint: 'AFlow scaffolding exists but MCTS not implemented',\n    },\n  ],\n  [\n    'dynamic-agent-selection',\n    { status: 'implemented', path: 'orchestration/aorchestra/agent-planner.ts' },\n  ],\n  ['dynamic-subagent-creation', { status: 'implemented', path: 'mcp/tools/create-expert.ts' }],\n  ['role-based-protocols', { status: 'implemented', path: 'agents/expert-roles.ts' }],\n  [\n    'rule-based-coordination',\n    { status: 'implemented', path: 'orchestration/aorchestra/worker-dispatcher.ts' },\n  ],\n  [\n    'temporal-graph-orchestration',\n    {\n      status: 'partial',\n      path: 'orchestration/graph/',\n      hint: 'Graph workflows exist but not temporal-aware',\n    },\n  ],\n  [\n    'model-based-coordination',\n    {\n      status: 'partial',\n      path: 'orchestration/aorchestra/',\n      hint: 'Worker dispatch but not model-based coordination theory',\n    },\n  ],\n  [\n    'trinity-roles',\n    {\n      status: 'partial',\n      path: 'agents/expert-roles.ts',\n      hint: '10 expert roles, not trinity pattern',\n    },\n  ],\n  [\n    'sew-self-evolving-workflows',\n    {\n      status: 'partial',\n      path: 'workflows/aflow/',\n      hint: 'AFlow framework but no self-evolution loop',\n    },\n  ],\n  [\n    'scaling-coordination-predictor',\n    {\n      status: 'partial',\n      path: 'orchestration/aorchestra/agent-planner.ts',\n      hint: 'Wave sizing but no scaling prediction',\n    },\n  ],\n\n  // Learning techniques\n  [\n    'self-refine-loop',\n    {\n      status: 'implemented',\n      path: 'mcp/tools/orchestrate-dispatch.ts',\n    },\n  ],\n  [\n    'recursive-improvement',\n    {\n      status: 'implemented',\n      path: 'mcp/tools/orchestrate-dispatch.ts',\n    },\n  ],\n  [\n    'rl-orchestrator',\n    {\n      status: 'implemented',\n      path: 'cli-adapters/linucb-bandit.ts',\n      hint: 'LinUCB contextual bandit actively selects models via explore-exploit in routing pipeline',\n    },\n  ],\n  ['reflexion-verbal-rl', { status: 'implemented', path: 'mcp/tools/orchestrate-reflection.ts' }],\n\n  // Source-derived techniques (Wave 6 — from open-source project analysis)\n  ['failure-lesson-injection', { status: 'implemented', path: 'orchestration/failure-lessons.ts' }],\n  [\n    'skill-relevance-matching',\n    {\n      status: 'implemented',\n      path: 'agents/experts/skill-matcher.ts',\n      hint: 'Matches task keywords to agent skill descriptions for optimal routing',\n    },\n  ],\n  [\n    'context-rot-prevention',\n    {\n      status: 'implemented',\n      path: 'agents/context-pruner.ts',\n      hint: 'Token-efficient context pruning prevents quality degradation in long sessions',\n    },\n  ],\n  [\n    'wave-based-parallel-execution',\n    {\n      status: 'implemented',\n      path: 'orchestration/aorchestra/worker-dispatcher.ts',\n      hint: 'AOrchestra worker dispatch with cross-wave context sharing',\n    },\n  ],\n  [\n    'write-time-deduplication',\n    {\n      status: 'implemented',\n      path: 'mcp/tools/memory-write.ts',\n      hint: 'Semantic dedup at write time prevents memory bloat',\n    },\n  ],\n]);\n\n// =============================================================================\n// FEATURE GATE INVENTORY\n// =============================================================================\n\n/** Inventory of feature gates linked to research-aligned techniques. */\nexport const FEATURE_GATE_INVENTORY: readonly FeatureGate[] = [\n  {\n    envVar: 'NEXUS_V2_MODE',\n    defaultValue: 'full',\n    description: 'V2 pipeline mode (off/partial/full)',\n    techniques: ['two-stage-routing', 'cascade-routing'],\n  },\n  {\n    envVar: 'NEXUS_AORCHESTRA',\n    defaultValue: 'true',\n    description: 'AOrchestra dynamic agent planning',\n    techniques: ['dynamic-agent-selection', 'model-based-coordination'],\n  },\n  {\n    envVar: 'NEXUS_AORCHESTRA_DISPATCH',\n    defaultValue: 'true',\n    description: 'AOrchestra worker dispatch',\n    techniques: ['rule-based-coordination', 'self-refine-loop'],\n  },\n  {\n    envVar: 'NEXUS_PERSIST_LEARNING',\n    defaultValue: 'true',\n    description: 'Cross-session routing persistence',\n    techniques: ['linucb-routing', 'preference-trained-routing', 'experience-memory'],\n  },\n  {\n    envVar: 'NEXUS_REFLECTIVE_MEMORY',\n    defaultValue: 'shadow',\n    description: 'Reflective memory retrieval (shadow=default, true=full, false=off)',\n    techniques: ['reflection-memory', 'adaptive-memory', 'reflexion-verbal-rl'],\n  },\n  {\n    envVar: 'NEXUS_BILLING_MODE',\n    defaultValue: 'plan',\n    description: 'Cost mode (plan=strongest, api=cost-aware)',\n    techniques: ['pilot-budget-routing', 'topsis-routing'],\n  },\n  {\n    envVar: 'NEXUS_WORKER_MAX_CALLS',\n    defaultValue: '6',\n    description: 'Max model calls per orchestrate',\n    techniques: ['self-refine-loop', 'recursive-improvement'],\n  },\n  { envVar: 'NEXUS_AUTH_ENABLED', defaultValue: 'true', description: 'Server authentication' },\n  { envVar: 'NEXUS_EVENTBUS_ENABLED', defaultValue: 'true', description: 'EventBus A2A bridge' },\n  {\n    envVar: 'NEXUS_RATE_LIMIT_ENABLED',\n    defaultValue: 'true',\n    description: 'Token-bucket rate limiter',\n  },\n  {\n    envVar: 'NEXUS_CIRCUIT_BREAKER_THRESHOLD',\n    defaultValue: '5',\n    description: 'Circuit breaker failure threshold',\n  },\n  {\n    envVar: 'NEXUS_V2_POLICY_MODE',\n    defaultValue: 'block',\n    description: 'Policy enforcement (off/warn/block)',\n  },\n  { envVar: 'NEXUS_LOG_LEVEL', defaultValue: 'info', description: 'Logging verbosity' },\n  {\n    envVar: 'NEXUS_DISABLE_SESSIONS',\n    defaultValue: 'false',\n    description: 'Disable session tracking',\n  },\n  {\n    envVar: 'NEXUS_DISABLE_METRICS',\n    defaultValue: 'false',\n    description: 'Disable metrics tracking',\n  },\n  {\n    envVar: 'NEXUS_ALLOW_MOCK_ORCHESTRATION',\n    defaultValue: 'false',\n    description: 'Allow mock orchestration (test/CI)',\n  },\n  {\n    envVar: 'NEXUS_MAX_CONCURRENT_EXPERTS',\n    defaultValue: '6',\n    description: 'Expert pool semaphore capacity',\n  },\n  {\n    envVar: 'NEXUS_VOTE_TIMEOUT_MS',\n    defaultValue: '60000',\n    description: 'Consensus vote timeout override',\n  },\n  {\n    envVar: 'NEXUS_EXPERT_TIMEOUT_MS',\n    defaultValue: '120000',\n    description: 'Expert handler timeout override',\n  },\n  {\n    envVar: 'NEXUS_WORKER_TIMEOUT_MS',\n    defaultValue: '60000',\n    description: 'Worker subprocess timeout override',\n  },\n];\n","/**\n * Topic alias map for normalizing free-form topic strings to canonical topics.\n *\n * Maps 200+ free-form topic strings found in papers.yaml to 12 canonical topics.\n * Used by normalizeTopicToCanonical() in research-schemas.ts.\n *\n * @module research/topic-aliases\n * @see Issue #1578 — Topic taxonomy normalization\n */\n\n/**\n * Map of free-form topic strings to canonical topics.\n */\nexport const TOPIC_ALIASES: Readonly<Record<string, string>> = {\n  // → consensus\n  voting: 'consensus',\n  'consensus-voting': 'consensus',\n  debate: 'consensus',\n  quorum: 'consensus',\n  byzantine: 'consensus',\n  'anti-conformity': 'consensus',\n  'agreement-based': 'consensus',\n  'correlation-aware': 'consensus',\n  'LLM consensus and multi-agent voting mechanisms': 'consensus',\n  'tolerance-parameter': 'consensus',\n\n  // → routing\n  'model-routing': 'routing',\n  'model routing': 'routing',\n  'llm-routing': 'routing',\n  cascade: 'routing',\n  'cascade-routing': 'routing',\n  'cost-optimization': 'routing',\n  'cost-reduction': 'routing',\n  'model-selection': 'routing',\n  topsis: 'routing',\n  linucb: 'routing',\n  'contextual-bandit': 'routing',\n  'quality-constrained': 'routing',\n  'budget-constraints': 'routing',\n  'unified-routing': 'routing',\n  'query-model-matching': 'routing',\n  'adaptive model routing and selection optimization': 'routing',\n  'multi-model routing optimization': 'routing',\n  'Single-head cross-attention for query-model matching': 'routing',\n  'performance-cost-tradeoff': 'routing',\n  'task-routing': 'routing',\n  'difficulty-estimation': 'routing',\n  'score-based': 'routing',\n  'optimal-weighting': 'routing',\n  'hierarchical-filtering': 'routing',\n  'preference-optimization': 'routing',\n  'preference-data': 'routing',\n  dpo: 'routing',\n  'cross-attention': 'routing',\n  'cma-es': 'routing',\n  profile: 'routing',\n  prediction: 'routing',\n  lightweight: 'routing',\n  bayesian: 'routing',\n  'quality-diversity': 'routing',\n  'resource-optimization': 'routing',\n  'routing-latency': 'routing',\n  optimization: 'routing',\n  'model-merging': 'routing',\n  'model-zoo': 'routing',\n\n  // → memory\n  'context-management': 'memory',\n  'context-compression': 'memory',\n  'context-control': 'memory',\n  compression: 'memory',\n  'kv-cache': 'memory',\n  'long-context': 'memory',\n  'long-term-memory': 'memory',\n  'episodic-memory': 'memory',\n  'graph-memory': 'memory',\n  'hierarchical-memory': 'memory',\n  'agentic-memory': 'memory',\n  'lifelong-learning': 'memory',\n  'cross-session-learning': 'memory',\n  'continual-learning': 'memory',\n  'self-editing-memory': 'memory',\n  'six-type-memory': 'memory',\n  'belief-memory': 'memory',\n  'belief-state': 'memory',\n  'action-memory': 'memory',\n  'memory-evolution': 'memory',\n  'virtual-context': 'memory',\n  paging: 'memory',\n  'prompt-compression': 'memory',\n  'learned-compression': 'memory',\n  zettelkasten: 'memory',\n  'knowledge-distillation': 'memory',\n  'history-encoding': 'memory',\n  'ictm-tuple': 'memory',\n  'latent-space': 'memory',\n  'vector-db': 'memory',\n  embedding: 'memory',\n  'Taxonomy of context management strategies': 'memory',\n  'Task-specific context compression': 'memory',\n  'Learned compression modules': 'memory',\n  rag: 'memory',\n  'retrieval augmented generation': 'memory',\n  svd: 'memory',\n  'svd-mutation': 'memory',\n  vae: 'memory',\n  knn: 'memory',\n  experience: 'memory',\n  'state-aware': 'memory',\n  'temporal-graph': 'memory',\n  versioning: 'memory',\n\n  // → code-generation\n  'code-repair': 'code-generation',\n  'code-agent': 'code-generation',\n  'code-review': 'code-generation',\n  'software-engineering': 'code-generation',\n  'swe-bench': 'code-generation',\n  'self-improvement': 'code-generation',\n  'self-evolving': 'code-generation',\n  'self-debug': 'code-generation',\n  'self-modification': 'code-generation',\n  'skill-library': 'code-generation',\n  'skill-discovery': 'code-generation',\n  'code review benchmarks': 'code-generation',\n  'code generation evaluation': 'code-generation',\n  'execution-feedback': 'code-generation',\n\n  // → cli-tools\n  mcp: 'cli-tools',\n  'MCP protocol': 'cli-tools',\n  'MCP security': 'cli-tools',\n  'MCP Security': 'cli-tools',\n  'mcp-applications': 'cli-tools',\n  'model-context-protocol': 'cli-tools',\n  puppeteer: 'cli-tools',\n  streaming: 'cli-tools',\n  integration: 'cli-tools',\n\n  // → orchestration\n  'multi-agent': 'orchestration',\n  'multi-agent-systems': 'orchestration',\n  'multi-agent orchestration': 'orchestration',\n  'Multi-Agent Orchestration': 'orchestration',\n  'multi-agent-orchestration': 'orchestration',\n  'multi-agent coordination': 'orchestration',\n  'multi-agent-coordination': 'orchestration',\n  'multi-agent-worker-dispatch': 'orchestration',\n  'multi-agent reliability': 'orchestration',\n  'multi-agent-rl': 'orchestration',\n  coordination: 'orchestration',\n  coordinator: 'orchestration',\n  collaboration: 'orchestration',\n  'graph-orchestration': 'orchestration',\n  'agent architecture': 'orchestration',\n  'dynamic-agent-creation': 'orchestration',\n  'specialized-agents': 'orchestration',\n  'thinker-worker-verifier': 'orchestration',\n  'two-agent': 'orchestration',\n  'meta-agent': 'orchestration',\n  agents: 'orchestration',\n  'workflow-optimization': 'orchestration',\n  'workflow-generation': 'orchestration',\n  'agent-communication': 'orchestration',\n  'inter-agent': 'orchestration',\n  'gvu-operator': 'orchestration',\n  'rubber-duck': 'orchestration',\n  'parallel-exploration': 'orchestration',\n  kubernetes: 'orchestration',\n  'scale-to-zero': 'orchestration',\n  edge: 'orchestration',\n  llm: 'orchestration',\n  multimodal: 'orchestration',\n  production: 'orchestration',\n  hybrid: 'orchestration',\n  'automatic-discovery': 'orchestration',\n  roadmap: 'orchestration',\n\n  // → security\n  'prompt injection defense': 'security',\n  'inter-agent-security': 'security',\n  'agent security': 'security',\n  compliance: 'security',\n  'formal-verification': 'security',\n  'formal-safety': 'security',\n\n  // → evaluation\n  benchmark: 'evaluation',\n  benchmarking: 'evaluation',\n  survey: 'evaluation',\n  'autonomous agent evaluation benchmarks': 'evaluation',\n  'evaluation-methods': 'evaluation',\n  'LLM evaluation': 'evaluation',\n  'hallucination-detection': 'evaluation',\n  'self-evaluation': 'evaluation',\n  'confidence-probe': 'evaluation',\n  'confidence-aware': 'evaluation',\n  verifier: 'evaluation',\n  observability: 'evaluation',\n  theoretical: 'evaluation',\n  'post-deployment': 'evaluation',\n  capability: 'evaluation',\n  'knowledge-gaps': 'evaluation',\n  helm: 'evaluation',\n\n  // → safety\n  'agentic-safety': 'safety',\n  'agentic AI safety': 'safety',\n  'safety-evaluation': 'safety',\n  'reward-modeling': 'safety',\n  'constitutional-ai': 'safety',\n  'hazard-analysis': 'safety',\n  stpa: 'safety',\n  'risk-assessment': 'safety',\n  'fault-tolerance': 'safety',\n  'ai-feedback': 'safety',\n  rlaif: 'safety',\n  'human-in-the-loop': 'safety',\n  feedback: 'safety',\n  'feedback-loop': 'safety',\n  'feedback-learning': 'safety',\n  anthropic: 'safety',\n\n  // → planning\n  'decision-making': 'planning',\n  'tree-search': 'planning',\n  'tree-structure': 'planning',\n  'multi-tree': 'planning',\n  mcts: 'planning',\n  backtrack: 'planning',\n  hindsight: 'planning',\n  'task-specific': 'planning',\n\n  // → tool-use\n  'tool use': 'tool-use',\n  'tool-augmented reasoning and function calling': 'tool-use',\n  'tool routing optimization': 'tool-use',\n  'dynamic-linking': 'tool-use',\n  'Sparse outcome rewards reduce tool calls by 72%': 'tool-use',\n\n  // → reasoning\n  'test-time': 'reasoning',\n  'test-time-scaling': 'reasoning',\n  'inference-scaling': 'reasoning',\n  'inference-optimization': 'reasoning',\n  'self-critique': 'reasoning',\n  'self-reflection': 'reasoning',\n  'self-referential': 'reasoning',\n  'self-play': 'reasoning',\n  reflexion: 'reasoning',\n  reflection: 'reasoning',\n  'reasoning-optimization': 'reasoning',\n  'meta-thinking': 'reasoning',\n  scaling: 'reasoning',\n  recursive: 'reasoning',\n  'trajectory-abstraction': 'reasoning',\n  'verbal-rl': 'reasoning',\n  exploration: 'reasoning',\n  'Reducible uncertainty modeling across agent trajectories': 'reasoning',\n  'Environmental feedback reduces uncertainty at decision gates': 'reasoning',\n  'reinforcement-learning': 'reasoning',\n  transformer: 'reasoning',\n  ssm: 'reasoning',\n  'sparse-activation': 'reasoning',\n  'behavior-distillation': 'reasoning',\n  'training-free': 'reasoning',\n  'transfer-learning': 'reasoning',\n  'instruction-tuning': 'reasoning',\n  'Dense process rewards improve performance by 22%': 'reasoning',\n  'prompt-optimization': 'reasoning',\n};\n\n/**\n * Normalize a free-form topic string to a canonical topic.\n * Returns the canonical topic if a mapping exists, otherwise the original string.\n */\nexport function normalizeTopicToCanonical(topic: string): string {\n  return TOPIC_ALIASES[topic] ?? 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package/dist/{chunk-GKFFRRS4.js → chunk-ZYHHDPFW.js}

@@ -1,14 +1,14 @@
 import {
   resolveToken
-} from "./chunk-DQEREDUW.js";
+} from "./chunk-WU3SUA35.js";
 import {
   GitHubProvider,
   ScmError
-} from "./chunk-YQAS2EGR.js";
+} from "./chunk-CPH6LKXO.js";
 import {
   err,
   ok
-} from "./chunk-L5BXCSMP.js";
+} from "./chunk-HKISF2E7.js";
 
 // src/scm/factory.ts
 async function createScmProvider(config) {
@@ -41,4 +41,4 @@ export {
   createScmProvider,
   createGitHubProvider
 };
-//# sourceMappingURL=chunk-GKFFRRS4.js.map
+//# sourceMappingURL=chunk-ZYHHDPFW.js.map