nexus-agents 2.89.1 → 2.90.0

package/dist/{child-mcp-config-AT2L3EAS.js → child-mcp-config-WUHKXBWX.js}

@@ -1,6 +1,6 @@
 import {
   createLogger
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import "./chunk-CH7QIDHQ.js";
 import "./chunk-PR4QN5HX.js";
 
@@ -59,4 +59,4 @@ export {
   generateMcpConfig,
   getDefaultAllowedTools
 };
-//# sourceMappingURL=child-mcp-config-AT2L3EAS.js.map
+//# sourceMappingURL=child-mcp-config-WUHKXBWX.js.map

package/dist/{chunk-JHU27PB2.js → chunk-2SMTCNXP.js}

@@ -1,6 +1,6 @@
 import {
   getErrorMessage
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/cli/setup-config.ts
 import { copyFileSync, existsSync, mkdirSync, writeFileSync } from "fs";
@@ -77,4 +77,4 @@ function ensureBackup(outputPath) {
 export {
   runConfigInitSync
 };
-//# sourceMappingURL=chunk-JHU27PB2.js.map
+//# sourceMappingURL=chunk-2SMTCNXP.js.map

package/dist/{chunk-O5F6QAIG.js → chunk-3FVSYMHK.js}

@@ -10,7 +10,7 @@ import {
   getTokenEstimator,
   isRateLimitLikeError,
   ok
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/adapters/base-adapter.ts
 var AdapterModelError = class extends ModelError {
@@ -707,4 +707,4 @@ export {
   DEFAULT_COLLECT_STREAM_MAX_CHUNKS,
   collectStream
 };
-//# sourceMappingURL=chunk-O5F6QAIG.js.map
+//# sourceMappingURL=chunk-3FVSYMHK.js.map

package/dist/{chunk-SRTQUTCB.js → chunk-3HTUYAKS.js}

@@ -5,7 +5,7 @@ import {
   MCP_TIMEOUTS,
   TEST_TIMEOUTS,
   WORKFLOW_TIMEOUTS
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/config/defaults-env.ts
 function parseIntEnv(envKey, fallback) {
@@ -348,4 +348,4 @@ export {
   CUSTOM_API_DEFAULT_MODEL,
   DEFAULTS
 };
-//# sourceMappingURL=chunk-SRTQUTCB.js.map
+//# sourceMappingURL=chunk-3HTUYAKS.js.map

package/dist/{chunk-LENO7TKE.js → chunk-3LKW4IEW.js}

@@ -2,14 +2,14 @@ import {
   CircuitBreakerRegistry,
   CircuitError,
   mapCliErrorToCategory
-} from "./chunk-AKO5H63G.js";
+} from "./chunk-JYIKPBXW.js";
 import {
   createLogger,
   err,
   getFallbackChainForCategory,
   getTimeProvider,
   ok
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/cli-adapters/cli-circuit-breaker.ts
 var CATEGORY_TO_FALLBACK = {
@@ -152,4 +152,4 @@ export {
   CliCircuitBreakerIntegration,
   createCliCircuitBreakerIntegration
 };
-//# sourceMappingURL=chunk-LENO7TKE.js.map
+//# sourceMappingURL=chunk-3LKW4IEW.js.map

package/dist/{chunk-DAWLXCLF.js → chunk-3NNVITJF.js}

@@ -1,6 +1,6 @@
 import {
   runConfigInitSync
-} from "./chunk-JHU27PB2.js";
+} from "./chunk-2SMTCNXP.js";
 import {
   VERSION,
   checkApiKeys,
@@ -8,10 +8,10 @@ import {
   checkSqlite,
   defaultConfig,
   initDataDirectories
-} from "./chunk-MXHJMSYQ.js";
+} from "./chunk-IBRZK662.js";
 import {
   probeAllClis
-} from "./chunk-MKKQ3CQJ.js";
+} from "./chunk-X5BQF6HM.js";
 import {
   BUILT_IN_EXPERTS
 } from "./chunk-ZM4O442V.js";
@@ -25,7 +25,7 @@ import {
   getErrorMessage,
   getTimeProvider,
   symbols
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   ensureGitignored,
   findRepoRoot
@@ -1987,4 +1987,4 @@ export {
   setupCommand,
   setupCommandAsync
 };
-//# sourceMappingURL=chunk-DAWLXCLF.js.map
+//# sourceMappingURL=chunk-3NNVITJF.js.map

package/dist/{chunk-W7YR5SGV.js → chunk-4GOT42ZA.js}

@@ -1,13 +1,13 @@
 import {
   getToolMemory
-} from "./chunk-SI7ZBCGU.js";
+} from "./chunk-7QXEK3O6.js";
 import {
   CLI_NAMES,
   StrategyDistiller,
   createLogger,
   getOutcomeStore,
   registerPersistentDistillerFactory
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   ensureLearningDir,
   getRulesFile
@@ -273,4 +273,4 @@ export {
   inferTaskCategory,
   summarizeContextForPrompt
 };
-//# sourceMappingURL=chunk-W7YR5SGV.js.map
+//# sourceMappingURL=chunk-4GOT42ZA.js.map

package/dist/{chunk-7QTWFRHH.js → chunk-4N54BTZU.js}

@@ -4,21 +4,21 @@ import {
   createStream,
   requireApiKey,
   validateApiKeyPresence
-} from "./chunk-O5F6QAIG.js";
+} from "./chunk-3FVSYMHK.js";
 import {
   CUSTOM_API_BASE_URL_ENV,
   PROVIDER_ENV_KEYS,
   validateCustomApiBaseUrl
-} from "./chunk-TSHCHZ7R.js";
+} from "./chunk-Y7E5ZWRQ.js";
 import {
   getToolMemory
-} from "./chunk-SI7ZBCGU.js";
+} from "./chunk-7QXEK3O6.js";
 import {
   getDefaultAvailableModelsCache
-} from "./chunk-PS7WKRJN.js";
+} from "./chunk-6Q33PBXC.js";
 import {
   CUSTOM_API_DEFAULT_MODEL
-} from "./chunk-SRTQUTCB.js";
+} from "./chunk-3HTUYAKS.js";
 import {
   createCliAdapter,
   createCliDetectionCache,
@@ -27,7 +27,7 @@ import {
   isCliAvailable,
   sanitizeOutput,
   withTimeout
-} from "./chunk-MKKQ3CQJ.js";
+} from "./chunk-X5BQF6HM.js";
 import {
   AgentError,
   CACHE_TIMEOUTS,
@@ -70,7 +70,7 @@ import {
   resolveCliAlias,
   resolveVoteTimeout,
   toRateLimitError
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   ensureLearningDir,
   getNexusDataDir,
@@ -9091,7 +9091,7 @@ async function processVotesWithCascade(engineVotes, opts) {
 var CONTRARIAN_ESCALATION_THRESHOLD = 0.8;
 async function runContrarianCheck(proposal, log) {
   try {
-    const { executeExpert } = await import("./expert-bridge-6KWMO2HT.js");
+    const { executeExpert } = await import("./expert-bridge-VIWFPPGZ.js");
     const prompt = [
       "You are a contrarian analyst. Your job is to find reasons this proposal should be REJECTED.",
       "Look for: YAGNI (not needed), MISALIGNED (wrong tech/architecture), SECURITY_RISK, SCOPE_CREEP.",
@@ -9603,4 +9603,4 @@ export {
   CONSENSUS_VOTE_OUTPUT_SCHEMA,
   registerConsensusVoteTool
 };
-//# sourceMappingURL=chunk-7QTWFRHH.js.map
+//# sourceMappingURL=chunk-4N54BTZU.js.map

package/dist/{chunk-F5GVZBSH.js → chunk-52ACUN6T.js}

@@ -1,14 +1,14 @@
 import {
   resolveToken
-} from "./chunk-QCZEC7H4.js";
+} from "./chunk-EAT4GTMT.js";
 import {
   GitHubProvider,
   ScmError
-} from "./chunk-XV7V3B35.js";
+} from "./chunk-EFHZHCF2.js";
 import {
   err,
   ok
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/scm/factory.ts
 async function createScmProvider(config) {
@@ -41,4 +41,4 @@ export {
   createScmProvider,
   createGitHubProvider
 };
-//# sourceMappingURL=chunk-F5GVZBSH.js.map
+//# sourceMappingURL=chunk-52ACUN6T.js.map

package/dist/{chunk-WF2YOYY7.js → chunk-57HMLBYN.js}

@@ -4,7 +4,7 @@ import {
 import {
   createLogger,
   getTimeProvider
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/mcp/tools/scanner-registry-fetcher.ts
 import { z } from "zod";
@@ -721,4 +721,4 @@ export {
   generateSecurityPlan,
   buildPlanFromAnalysis
 };
-//# sourceMappingURL=chunk-WF2YOYY7.js.map
+//# sourceMappingURL=chunk-57HMLBYN.js.map

package/dist/{chunk-PS7WKRJN.js → chunk-6Q33PBXC.js}

@@ -1,6 +1,6 @@
 import {
   createLogger
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/config/available-models-cache.ts
 var logger = createLogger({ component: "available-models-cache" });
@@ -150,4 +150,4 @@ export {
   getDefaultAvailableModelsCache,
   setDefaultAvailableModelsCache
 };
-//# sourceMappingURL=chunk-PS7WKRJN.js.map
+//# sourceMappingURL=chunk-6Q33PBXC.js.map

package/dist/{chunk-SI7ZBCGU.js → chunk-7QXEK3O6.js}

@@ -5,13 +5,13 @@ import {
 } from "./chunk-6T3EPABN.js";
 import {
   generateId
-} from "./chunk-WWY6V4NK.js";
+} from "./chunk-PRGNJRID.js";
 import {
   getMemoryRegistry
 } from "./chunk-PQHVC4BD.js";
 import {
   SessionMemory
-} from "./chunk-UISGEXHO.js";
+} from "./chunk-YEQE7WLP.js";
 import {
   ErrorCode,
   NexusError,
@@ -24,7 +24,7 @@ import {
   getTimeProvider,
   ok,
   setSharedMobiMemDbPathResolver
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   nexusDataPath
 } from "./chunk-CH7QIDHQ.js";
@@ -1229,6 +1229,37 @@ var MemoryMarkdownHelper = class {
       this.logger.warn("Failed to delete Markdown file", { key, filepath, error });
     }
   }
+  /**
+   * Delete orphaned Markdown files whose key no longer exists in the store
+   * (#3112). Markdown is only cleaned on the explicit `delete()` path; the
+   * `prune` / `expireAll` / auto-expire paths delete SQLite rows without it,
+   * so the directory grows unbounded. Reconcile by forward-mapping every live
+   * key to its filename and removing any `.md` file not in that set (the
+   * forward map is lossy, but a collision only keeps a file a live key still
+   * needs). Best-effort — never throws. Returns the number of files removed.
+   */
+  reconcile(liveKeys) {
+    let removed = 0;
+    try {
+      if (!fs.existsSync(this.markdownDir)) return 0;
+      const expected = new Set(liveKeys.map((k) => this.keyToFilename(k)));
+      for (const file of fs.readdirSync(this.markdownDir)) {
+        if (!file.endsWith(".md") || expected.has(file)) continue;
+        try {
+          fs.unlinkSync(path.join(this.markdownDir, file));
+          removed++;
+        } catch (error) {
+          this.logger.warn("Failed to delete orphaned Markdown file", { file, error });
+        }
+      }
+      if (removed > 0) {
+        this.logger.debug("Reconciled Markdown dir", { removed, live: liveKeys.length });
+      }
+    } catch (error) {
+      this.logger.warn("Markdown reconcile failed", { error });
+    }
+    return removed;
+  }
   /**
    * Convert a memory key to a safe filename.
    */
@@ -1565,11 +1596,30 @@ var HybridMemoryBackend = class {
   }
   prune(olderThan) {
     this.ensureInitialized();
-    return Promise.resolve(pruneOldEntries(this.getDatabase(), olderThan, this.logger));
+    const result = pruneOldEntries(this.getDatabase(), olderThan, this.logger);
+    if (result.ok && result.value > 0) this.reconcileMarkdown();
+    return Promise.resolve(result);
   }
   expireAll() {
     this.ensureInitialized();
-    return Promise.resolve(expireAllEntries(this.getDatabase(), this.logger));
+    const result = expireAllEntries(this.getDatabase(), this.logger);
+    if (result.ok && result.value > 0) this.reconcileMarkdown();
+    return Promise.resolve(result);
+  }
+  /**
+   * Remove Markdown sidecars whose key no longer exists in SQLite (#3112).
+   * Covers every row-deletion path (prune / expire / auto-expire) uniformly,
+   * not just the explicit `delete()`. Best-effort.
+   */
+  reconcileMarkdown() {
+    try {
+      const rows = this.getDatabase().prepare("SELECT key FROM memories").all();
+      this.markdown.reconcile(rows.map((r) => r.key));
+    } catch (error) {
+      this.logger.warn("Markdown reconcile query failed", {
+        error: error instanceof Error ? error.message : String(error)
+      });
+    }
   }
   delete(key) {
     try {
@@ -5562,4 +5612,4 @@ export {
   reinitializeMemoryBackends,
   ToolMemoryManager
 };
-//# sourceMappingURL=chunk-SI7ZBCGU.js.map
+//# sourceMappingURL=chunk-7QXEK3O6.js.map