nexus-agents 2.89.1 → 2.89.2

package/dist/{child-mcp-config-AT2L3EAS.js → child-mcp-config-WUHKXBWX.js}

@@ -1,6 +1,6 @@
 import {
   createLogger
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import "./chunk-CH7QIDHQ.js";
 import "./chunk-PR4QN5HX.js";
 
@@ -59,4 +59,4 @@ export {
   generateMcpConfig,
   getDefaultAllowedTools
 };
-//# sourceMappingURL=child-mcp-config-AT2L3EAS.js.map
+//# sourceMappingURL=child-mcp-config-WUHKXBWX.js.map

package/dist/{chunk-JHU27PB2.js → chunk-2SMTCNXP.js}

@@ -1,6 +1,6 @@
 import {
   getErrorMessage
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/cli/setup-config.ts
 import { copyFileSync, existsSync, mkdirSync, writeFileSync } from "fs";
@@ -77,4 +77,4 @@ function ensureBackup(outputPath) {
 export {
   runConfigInitSync
 };
-//# sourceMappingURL=chunk-JHU27PB2.js.map
+//# sourceMappingURL=chunk-2SMTCNXP.js.map

package/dist/{chunk-O5F6QAIG.js → chunk-3FVSYMHK.js}

@@ -10,7 +10,7 @@ import {
   getTokenEstimator,
   isRateLimitLikeError,
   ok
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/adapters/base-adapter.ts
 var AdapterModelError = class extends ModelError {
@@ -707,4 +707,4 @@ export {
   DEFAULT_COLLECT_STREAM_MAX_CHUNKS,
   collectStream
 };
-//# sourceMappingURL=chunk-O5F6QAIG.js.map
+//# sourceMappingURL=chunk-3FVSYMHK.js.map

package/dist/{chunk-SRTQUTCB.js → chunk-3HTUYAKS.js}

@@ -5,7 +5,7 @@ import {
   MCP_TIMEOUTS,
   TEST_TIMEOUTS,
   WORKFLOW_TIMEOUTS
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/config/defaults-env.ts
 function parseIntEnv(envKey, fallback) {
@@ -348,4 +348,4 @@ export {
   CUSTOM_API_DEFAULT_MODEL,
   DEFAULTS
 };
-//# sourceMappingURL=chunk-SRTQUTCB.js.map
+//# sourceMappingURL=chunk-3HTUYAKS.js.map

package/dist/{chunk-LENO7TKE.js → chunk-3LKW4IEW.js}

@@ -2,14 +2,14 @@ import {
   CircuitBreakerRegistry,
   CircuitError,
   mapCliErrorToCategory
-} from "./chunk-AKO5H63G.js";
+} from "./chunk-JYIKPBXW.js";
 import {
   createLogger,
   err,
   getFallbackChainForCategory,
   getTimeProvider,
   ok
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/cli-adapters/cli-circuit-breaker.ts
 var CATEGORY_TO_FALLBACK = {
@@ -152,4 +152,4 @@ export {
   CliCircuitBreakerIntegration,
   createCliCircuitBreakerIntegration
 };
-//# sourceMappingURL=chunk-LENO7TKE.js.map
+//# sourceMappingURL=chunk-3LKW4IEW.js.map

package/dist/{chunk-RAUA6B2M.js → chunk-44XYCZCU.js}

@@ -1,10 +1,10 @@
 import {
   getTokenEnvVars,
   resolveToken
-} from "./chunk-QCZEC7H4.js";
+} from "./chunk-EAT4GTMT.js";
 import {
   executeExpert
-} from "./chunk-EUMVRLJL.js";
+} from "./chunk-S6FXRXYE.js";
 import {
   EventTopics,
   JobStatusSchema,
@@ -42,7 +42,7 @@ import {
   writeJobComplete,
   writeJobFailed,
   writeJobPending
-} from "./chunk-7QTWFRHH.js";
+} from "./chunk-4N54BTZU.js";
 import {
   REGISTRY_PATH,
   getProjectRoot,
@@ -51,14 +51,14 @@ import {
   normalizeTopicToCanonical,
   savePapersRegistry,
   synthesizeResearch
-} from "./chunk-KR6UR263.js";
+} from "./chunk-CGSVTROC.js";
 import {
   IssueTriage,
   sanitizeInput
-} from "./chunk-O5OJNB4C.js";
+} from "./chunk-IOXR6W24.js";
 import {
   generateSecurityPlan
-} from "./chunk-WF2YOYY7.js";
+} from "./chunk-57HMLBYN.js";
 import {
   analyzeGitHubRepo
 } from "./chunk-HFOQKCD2.js";
@@ -71,25 +71,25 @@ import {
   getContextForTask,
   inferTaskCategory,
   summarizeContextForPrompt
-} from "./chunk-W7YR5SGV.js";
+} from "./chunk-4GOT42ZA.js";
 import {
   DEFAULT_RELEVANCE_CONFIG,
   MemoryImportance,
   calculateTextJaccardSimilarity,
   getToolMemory
-} from "./chunk-SI7ZBCGU.js";
+} from "./chunk-7QXEK3O6.js";
 import {
   DEFAULT_TASK_TTL_MS,
   DEFAULT_TOOL_RATE_LIMITS,
   clampTaskTtl
-} from "./chunk-MXHJMSYQ.js";
+} from "./chunk-5X7GAOVZ.js";
 import {
   getAvailabilityCache,
   resolveFallback
-} from "./chunk-MHPOJAPZ.js";
+} from "./chunk-SFZESA5O.js";
 import {
   DEFAULTS
-} from "./chunk-SRTQUTCB.js";
+} from "./chunk-3HTUYAKS.js";
 import {
   resolveInsideRoot
 } from "./chunk-NUBSJGQZ.js";
@@ -105,11 +105,11 @@ import {
   getAvailableClis,
   sleep,
   withTimeout
-} from "./chunk-MKKQ3CQJ.js";
+} from "./chunk-X5BQF6HM.js";
 import {
   generateHyphenId,
   generateUUID
-} from "./chunk-WWY6V4NK.js";
+} from "./chunk-PRGNJRID.js";
 import {
   BUILT_IN_EXPERTS,
   BuiltInExpertTypeSchema,
@@ -121,7 +121,7 @@ import {
 } from "./chunk-PQHVC4BD.js";
 import {
   createSessionMemory
-} from "./chunk-UISGEXHO.js";
+} from "./chunk-YEQE7WLP.js";
 import {
   AGENT_ROUTER_TIMEOUTS,
   API_TIMEOUTS,
@@ -192,7 +192,7 @@ import {
   resolveModelIdentitySync,
   toExpertTaskAnalysisResult,
   withStep
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   getNexusDataDir,
   nexusDataPath,
@@ -26886,7 +26886,7 @@ async function populateUnifiedContextOnState(state) {
   try {
     const taskCandidate = state["task"];
     if (typeof taskCandidate !== "string" || taskCandidate === "") return;
-    const { getContextForTask: getContextForTask2, inferTaskCategory: inferTaskCategory2 } = await import("./context-retriever-OBGV7Y2U.js");
+    const { getContextForTask: getContextForTask2, inferTaskCategory: inferTaskCategory2 } = await import("./context-retriever-C4CNVKR5.js");
     const ctx = await getContextForTask2({
       task: taskCandidate,
       category: inferTaskCategory2(taskCandidate),
@@ -42521,7 +42521,7 @@ async function tryIssueTriage(task) {
   try {
     const issueMatch = task.match(/github\.com\/([^/]+\/[^/]+)\/issues\/(\d+)/);
     if (issueMatch === null) return null;
-    const { createIssueTriage } = await import("./issue-triage-U3PSWSCY.js");
+    const { createIssueTriage } = await import("./issue-triage-IJGC3VZJ.js");
     const triage = createIssueTriage();
     const owner = issueMatch[1] ?? "";
     const num = issueMatch[2] ?? "";
@@ -42549,7 +42549,7 @@ var VALID_TEMPLATES = /* @__PURE__ */ new Set([
 ]);
 async function classifyWithLLM(task) {
   try {
-    const { executeExpert: executeExpert2 } = await import("./expert-bridge-6KWMO2HT.js");
+    const { executeExpert: executeExpert2 } = await import("./expert-bridge-VIWFPPGZ.js");
     const prompt = [
       "Classify this task into exactly one pipeline template.",
       "Templates: dev (implementation/bug fix/refactor), research (investigate/evaluate/compare),",
@@ -43331,7 +43331,7 @@ var memoryInitPromise = null;
 async function initPipelineMemory() {
   if (cachedMemory !== null) return cachedMemory;
   try {
-    const { createSessionMemory: createSessionMemory2 } = await import("./session-memory-FSLRKYIC.js");
+    const { createSessionMemory: createSessionMemory2 } = await import("./session-memory-HGCDSZ5R.js");
     const { getLearningDir } = await import("./learning-persistence-UKPO7RYK.js");
     const mem = createSessionMemory2(getLearningDir());
     mem.startSession(`pipeline-${String(getTimeProvider().now())}`);
@@ -43388,7 +43388,7 @@ function recordRoutingExperience(category, success, durationMs) {
     callRecord(routingMemoryCache);
     return;
   }
-  routingMemoryInitPromise ??= import("./routing-memory-XBYTU4KZ.js").then(({ createRoutingMemory }) => {
+  routingMemoryInitPromise ??= import("./routing-memory-PYO46COZ.js").then(({ createRoutingMemory }) => {
     routingMemoryCache ??= createRoutingMemory();
     return routingMemoryCache;
   }).catch((error) => {
@@ -43422,7 +43422,7 @@ ${text}` : "";
 }
 async function getWeatherContext() {
   try {
-    const { generateWeatherReport: generateWeatherReport2 } = await import("./weather-report-YLD3VXUC.js");
+    const { generateWeatherReport: generateWeatherReport2 } = await import("./weather-report-RWAMQHBL.js");
     const report = generateWeatherReport2({ includeAdaptive: true });
     const mappings = "recommendedMappings" in report ? report.recommendedMappings : [];
     if (!Array.isArray(mappings) || mappings.length === 0) return "";
@@ -43440,7 +43440,7 @@ ${lines}
 }
 async function getMemoryContext(task) {
   try {
-    const { createSessionMemory: createSessionMemory2 } = await import("./session-memory-FSLRKYIC.js");
+    const { createSessionMemory: createSessionMemory2 } = await import("./session-memory-HGCDSZ5R.js");
     const { getLearningDir } = await import("./learning-persistence-UKPO7RYK.js");
     const memory = createSessionMemory2(getLearningDir(), { maxLearningsInContext: 10 });
     const learnings = memory.searchLearnings(task.slice(0, 200));
@@ -43546,7 +43546,7 @@ ${contextBlock}`;
       const strategy = config.votingStrategy ?? "higher_order";
       await postProgress(config, "Vote", `Running consensus with ${strategy} strategy...`);
       try {
-        const { executeVoting } = await import("./consensus-vote-5NIBODVH.js");
+        const { executeVoting } = await import("./consensus-vote-B6W7YQ6K.js");
         const votingResult = await executeVoting(
           {
             proposal: plan.slice(0, 4e3),
@@ -44473,7 +44473,7 @@ async function searchCodebaseForTask(task) {
 }
 async function queryResearchRegistry(task) {
   try {
-    const { synthesizeResearch: synthesizeResearch2 } = await import("./research-helpers-synthesize-IDK2V5JN.js");
+    const { synthesizeResearch: synthesizeResearch2 } = await import("./research-helpers-synthesize-CNZ4C3FN.js");
     const topic = task.split(/[.!?\n]/).filter((s) => s.trim().length > 10)[0]?.trim();
     if (topic === void 0) return null;
     const result = await synthesizeResearch2(topic.slice(0, 50));
@@ -44544,7 +44544,7 @@ function createScanStageWrapper() {
       try {
         const slug = ctx.task.match(/([a-zA-Z0-9._-]+\/[a-zA-Z0-9._-]+)/)?.[1];
         if (slug !== void 0) {
-          const { generateSecurityPlan: generateSecurityPlan2 } = await import("./repo-security-plan-WOUJAXSZ.js");
+          const { generateSecurityPlan: generateSecurityPlan2 } = await import("./repo-security-plan-5MFY7GGQ.js");
           const plan = await generateSecurityPlan2({ repo: slug, maxScanners: 10 });
           const recs = plan.recommendations.slice(0, 5).map((r) => `${r.priority}: ${r.displayName} (${r.category})`).join("; ");
           return output(PIPELINE_STATE_KEYS.FINDINGS, recs, getTimeProvider().now() - start, true);
@@ -51160,7 +51160,7 @@ var GitHubTaskTracker = class {
   cachedProvider = null;
   async getProvider() {
     if (this.cachedProvider !== null) return this.cachedProvider;
-    const { createScmProvider } = await import("./factory-4RSAV4FC.js");
+    const { createScmProvider } = await import("./factory-NNSXCD25.js");
     const result = await createScmProvider({ repo: this.config.repo ?? "" });
     if (!result.ok) throw new Error(`SCM provider error: ${result.error.message}`);
     this.cachedProvider = result.value;
@@ -51874,4 +51874,4 @@ export {
   detectBackend,
   createTaskTracker
 };
-//# sourceMappingURL=chunk-RAUA6B2M.js.map
+//# sourceMappingURL=chunk-44XYCZCU.js.map

package/dist/{chunk-W7YR5SGV.js → chunk-4GOT42ZA.js}

@@ -1,13 +1,13 @@
 import {
   getToolMemory
-} from "./chunk-SI7ZBCGU.js";
+} from "./chunk-7QXEK3O6.js";
 import {
   CLI_NAMES,
   StrategyDistiller,
   createLogger,
   getOutcomeStore,
   registerPersistentDistillerFactory
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   ensureLearningDir,
   getRulesFile
@@ -273,4 +273,4 @@ export {
   inferTaskCategory,
   summarizeContextForPrompt
 };
-//# sourceMappingURL=chunk-W7YR5SGV.js.map
+//# sourceMappingURL=chunk-4GOT42ZA.js.map

package/dist/{chunk-7QTWFRHH.js → chunk-4N54BTZU.js}

@@ -4,21 +4,21 @@ import {
   createStream,
   requireApiKey,
   validateApiKeyPresence
-} from "./chunk-O5F6QAIG.js";
+} from "./chunk-3FVSYMHK.js";
 import {
   CUSTOM_API_BASE_URL_ENV,
   PROVIDER_ENV_KEYS,
   validateCustomApiBaseUrl
-} from "./chunk-TSHCHZ7R.js";
+} from "./chunk-Y7E5ZWRQ.js";
 import {
   getToolMemory
-} from "./chunk-SI7ZBCGU.js";
+} from "./chunk-7QXEK3O6.js";
 import {
   getDefaultAvailableModelsCache
-} from "./chunk-PS7WKRJN.js";
+} from "./chunk-6Q33PBXC.js";
 import {
   CUSTOM_API_DEFAULT_MODEL
-} from "./chunk-SRTQUTCB.js";
+} from "./chunk-3HTUYAKS.js";
 import {
   createCliAdapter,
   createCliDetectionCache,
@@ -27,7 +27,7 @@ import {
   isCliAvailable,
   sanitizeOutput,
   withTimeout
-} from "./chunk-MKKQ3CQJ.js";
+} from "./chunk-X5BQF6HM.js";
 import {
   AgentError,
   CACHE_TIMEOUTS,
@@ -70,7 +70,7 @@ import {
   resolveCliAlias,
   resolveVoteTimeout,
   toRateLimitError
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   ensureLearningDir,
   getNexusDataDir,
@@ -9091,7 +9091,7 @@ async function processVotesWithCascade(engineVotes, opts) {
 var CONTRARIAN_ESCALATION_THRESHOLD = 0.8;
 async function runContrarianCheck(proposal, log) {
   try {
-    const { executeExpert } = await import("./expert-bridge-6KWMO2HT.js");
+    const { executeExpert } = await import("./expert-bridge-VIWFPPGZ.js");
     const prompt = [
       "You are a contrarian analyst. Your job is to find reasons this proposal should be REJECTED.",
       "Look for: YAGNI (not needed), MISALIGNED (wrong tech/architecture), SECURITY_RISK, SCOPE_CREEP.",
@@ -9603,4 +9603,4 @@ export {
   CONSENSUS_VOTE_OUTPUT_SCHEMA,
   registerConsensusVoteTool
 };
-//# sourceMappingURL=chunk-7QTWFRHH.js.map
+//# sourceMappingURL=chunk-4N54BTZU.js.map

package/dist/{chunk-F5GVZBSH.js → chunk-52ACUN6T.js}

@@ -1,14 +1,14 @@
 import {
   resolveToken
-} from "./chunk-QCZEC7H4.js";
+} from "./chunk-EAT4GTMT.js";
 import {
   GitHubProvider,
   ScmError
-} from "./chunk-XV7V3B35.js";
+} from "./chunk-EFHZHCF2.js";
 import {
   err,
   ok
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/scm/factory.ts
 async function createScmProvider(config) {
@@ -41,4 +41,4 @@ export {
   createScmProvider,
   createGitHubProvider
 };
-//# sourceMappingURL=chunk-F5GVZBSH.js.map
+//# sourceMappingURL=chunk-52ACUN6T.js.map

package/dist/{chunk-WF2YOYY7.js → chunk-57HMLBYN.js}

@@ -4,7 +4,7 @@ import {
 import {
   createLogger,
   getTimeProvider
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/mcp/tools/scanner-registry-fetcher.ts
 import { z } from "zod";
@@ -721,4 +721,4 @@ export {
   generateSecurityPlan,
   buildPlanFromAnalysis
 };
-//# sourceMappingURL=chunk-WF2YOYY7.js.map
+//# sourceMappingURL=chunk-57HMLBYN.js.map

package/dist/{chunk-MXHJMSYQ.js → chunk-5X7GAOVZ.js}

@@ -1,6 +1,6 @@
 import {
   DEFAULTS
-} from "./chunk-SRTQUTCB.js";
+} from "./chunk-3HTUYAKS.js";
 import {
   resolveInsideRoot
 } from "./chunk-NUBSJGQZ.js";
@@ -10,7 +10,7 @@ import {
 import {
   createAllAdapters,
   probeCli
-} from "./chunk-MKKQ3CQJ.js";
+} from "./chunk-X5BQF6HM.js";
 import {
   CliNameSchema,
   DEFAULT_CAPABILITIES,
@@ -26,7 +26,7 @@ import {
   ok,
   symbols,
   writeLine
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   detectSandbox,
   getLearningDir,
@@ -40,7 +40,7 @@ import {
 } from "./chunk-CH7QIDHQ.js";
 
 // src/version.ts
-var VERSION = true ? "2.89.1" : "dev";
+var VERSION = true ? "2.89.2" : "dev";
 
 // src/config/schemas-core.ts
 import { z } from "zod";
@@ -2096,7 +2096,7 @@ async function runDoctorFix(result) {
   writeLine2("\u2500".repeat(40));
   let fixCount = 0;
   if (!result.dataDirectory.rootExists || result.dataDirectory.subdirectories.some((d) => !d.exists || !d.writable)) {
-    const { runSetup } = await import("./setup-command-IRBQGUWR.js");
+    const { runSetup } = await import("./setup-command-MXUNSSNJ.js");
     const setupResult = runSetup({
       skipMcp: true,
       skipRules: true,
@@ -2110,7 +2110,7 @@ async function runDoctorFix(result) {
     }
   }
   if (!result.configFile.found) {
-    const { runConfigInitSync } = await import("./setup-config-7MK6PRX6.js");
+    const { runConfigInitSync } = await import("./setup-config-QPS4K5QU.js");
     const configResult = runConfigInitSync(process.cwd(), false, false);
     if (configResult.success && configResult.created) {
       writeLine2(`\u2713 Generated config: ${configResult.path}`);
@@ -2208,4 +2208,4 @@ export {
   startStdioServer,
   closeServer
 };
-//# sourceMappingURL=chunk-MXHJMSYQ.js.map
+//# sourceMappingURL=chunk-5X7GAOVZ.js.map

package/dist/{chunk-PS7WKRJN.js → chunk-6Q33PBXC.js}

@@ -1,6 +1,6 @@
 import {
   createLogger
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/config/available-models-cache.ts
 var logger = createLogger({ component: "available-models-cache" });
@@ -150,4 +150,4 @@ export {
   getDefaultAvailableModelsCache,
   setDefaultAvailableModelsCache
 };
-//# sourceMappingURL=chunk-PS7WKRJN.js.map
+//# sourceMappingURL=chunk-6Q33PBXC.js.map

package/dist/{chunk-SI7ZBCGU.js → chunk-7QXEK3O6.js}

@@ -5,13 +5,13 @@ import {
 } from "./chunk-6T3EPABN.js";
 import {
   generateId
-} from "./chunk-WWY6V4NK.js";
+} from "./chunk-PRGNJRID.js";
 import {
   getMemoryRegistry
 } from "./chunk-PQHVC4BD.js";
 import {
   SessionMemory
-} from "./chunk-UISGEXHO.js";
+} from "./chunk-YEQE7WLP.js";
 import {
   ErrorCode,
   NexusError,
@@ -24,7 +24,7 @@ import {
   getTimeProvider,
   ok,
   setSharedMobiMemDbPathResolver
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   nexusDataPath
 } from "./chunk-CH7QIDHQ.js";
@@ -1229,6 +1229,37 @@ var MemoryMarkdownHelper = class {
       this.logger.warn("Failed to delete Markdown file", { key, filepath, error });
     }
   }
+  /**
+   * Delete orphaned Markdown files whose key no longer exists in the store
+   * (#3112). Markdown is only cleaned on the explicit `delete()` path; the
+   * `prune` / `expireAll` / auto-expire paths delete SQLite rows without it,
+   * so the directory grows unbounded. Reconcile by forward-mapping every live
+   * key to its filename and removing any `.md` file not in that set (the
+   * forward map is lossy, but a collision only keeps a file a live key still
+   * needs). Best-effort — never throws. Returns the number of files removed.
+   */
+  reconcile(liveKeys) {
+    let removed = 0;
+    try {
+      if (!fs.existsSync(this.markdownDir)) return 0;
+      const expected = new Set(liveKeys.map((k) => this.keyToFilename(k)));
+      for (const file of fs.readdirSync(this.markdownDir)) {
+        if (!file.endsWith(".md") || expected.has(file)) continue;
+        try {
+          fs.unlinkSync(path.join(this.markdownDir, file));
+          removed++;
+        } catch (error) {
+          this.logger.warn("Failed to delete orphaned Markdown file", { file, error });
+        }
+      }
+      if (removed > 0) {
+        this.logger.debug("Reconciled Markdown dir", { removed, live: liveKeys.length });
+      }
+    } catch (error) {
+      this.logger.warn("Markdown reconcile failed", { error });
+    }
+    return removed;
+  }
   /**
    * Convert a memory key to a safe filename.
    */
@@ -1565,11 +1596,30 @@ var HybridMemoryBackend = class {
   }
   prune(olderThan) {
     this.ensureInitialized();
-    return Promise.resolve(pruneOldEntries(this.getDatabase(), olderThan, this.logger));
+    const result = pruneOldEntries(this.getDatabase(), olderThan, this.logger);
+    if (result.ok && result.value > 0) this.reconcileMarkdown();
+    return Promise.resolve(result);
   }
   expireAll() {
     this.ensureInitialized();
-    return Promise.resolve(expireAllEntries(this.getDatabase(), this.logger));
+    const result = expireAllEntries(this.getDatabase(), this.logger);
+    if (result.ok && result.value > 0) this.reconcileMarkdown();
+    return Promise.resolve(result);
+  }
+  /**
+   * Remove Markdown sidecars whose key no longer exists in SQLite (#3112).
+   * Covers every row-deletion path (prune / expire / auto-expire) uniformly,
+   * not just the explicit `delete()`. Best-effort.
+   */
+  reconcileMarkdown() {
+    try {
+      const rows = this.getDatabase().prepare("SELECT key FROM memories").all();
+      this.markdown.reconcile(rows.map((r) => r.key));
+    } catch (error) {
+      this.logger.warn("Markdown reconcile query failed", {
+        error: error instanceof Error ? error.message : String(error)
+      });
+    }
   }
   delete(key) {
     try {
@@ -5562,4 +5612,4 @@ export {
   reinitializeMemoryBackends,
   ToolMemoryManager
 };
-//# sourceMappingURL=chunk-SI7ZBCGU.js.map
+//# sourceMappingURL=chunk-7QXEK3O6.js.map