nexus-agents 2.89.0 → 2.89.2

package/dist/{chunk-F5GVZBSH.js → chunk-52ACUN6T.js}

@@ -1,14 +1,14 @@
 import {
   resolveToken
-} from "./chunk-QCZEC7H4.js";
+} from "./chunk-EAT4GTMT.js";
 import {
   GitHubProvider,
   ScmError
-} from "./chunk-XV7V3B35.js";
+} from "./chunk-EFHZHCF2.js";
 import {
   err,
   ok
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/scm/factory.ts
 async function createScmProvider(config) {
@@ -41,4 +41,4 @@ export {
   createScmProvider,
   createGitHubProvider
 };
-//# sourceMappingURL=chunk-F5GVZBSH.js.map
+//# sourceMappingURL=chunk-52ACUN6T.js.map

package/dist/{chunk-WF2YOYY7.js → chunk-57HMLBYN.js}

@@ -4,7 +4,7 @@ import {
 import {
   createLogger,
   getTimeProvider
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/mcp/tools/scanner-registry-fetcher.ts
 import { z } from "zod";
@@ -721,4 +721,4 @@ export {
   generateSecurityPlan,
   buildPlanFromAnalysis
 };
-//# sourceMappingURL=chunk-WF2YOYY7.js.map
+//# sourceMappingURL=chunk-57HMLBYN.js.map

package/dist/{chunk-SCT26VWJ.js → chunk-5X7GAOVZ.js}

@@ -1,6 +1,6 @@
 import {
   DEFAULTS
-} from "./chunk-SRTQUTCB.js";
+} from "./chunk-3HTUYAKS.js";
 import {
   resolveInsideRoot
 } from "./chunk-NUBSJGQZ.js";
@@ -10,7 +10,7 @@ import {
 import {
   createAllAdapters,
   probeCli
-} from "./chunk-MKKQ3CQJ.js";
+} from "./chunk-X5BQF6HM.js";
 import {
   CliNameSchema,
   DEFAULT_CAPABILITIES,
@@ -26,7 +26,7 @@ import {
   ok,
   symbols,
   writeLine
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   detectSandbox,
   getLearningDir,
@@ -40,7 +40,7 @@ import {
 } from "./chunk-CH7QIDHQ.js";
 
 // src/version.ts
-var VERSION = true ? "2.89.0" : "dev";
+var VERSION = true ? "2.89.2" : "dev";
 
 // src/config/schemas-core.ts
 import { z } from "zod";
@@ -2096,7 +2096,7 @@ async function runDoctorFix(result) {
   writeLine2("\u2500".repeat(40));
   let fixCount = 0;
   if (!result.dataDirectory.rootExists || result.dataDirectory.subdirectories.some((d) => !d.exists || !d.writable)) {
-    const { runSetup } = await import("./setup-command-UMBPSFIJ.js");
+    const { runSetup } = await import("./setup-command-MXUNSSNJ.js");
     const setupResult = runSetup({
       skipMcp: true,
       skipRules: true,
@@ -2110,7 +2110,7 @@ async function runDoctorFix(result) {
     }
   }
   if (!result.configFile.found) {
-    const { runConfigInitSync } = await import("./setup-config-7MK6PRX6.js");
+    const { runConfigInitSync } = await import("./setup-config-QPS4K5QU.js");
     const configResult = runConfigInitSync(process.cwd(), false, false);
     if (configResult.success && configResult.created) {
       writeLine2(`\u2713 Generated config: ${configResult.path}`);
@@ -2208,4 +2208,4 @@ export {
   startStdioServer,
   closeServer
 };
-//# sourceMappingURL=chunk-SCT26VWJ.js.map
+//# sourceMappingURL=chunk-5X7GAOVZ.js.map

package/dist/{chunk-PS7WKRJN.js → chunk-6Q33PBXC.js}

@@ -1,6 +1,6 @@
 import {
   createLogger
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 
 // src/config/available-models-cache.ts
 var logger = createLogger({ component: "available-models-cache" });
@@ -150,4 +150,4 @@ export {
   getDefaultAvailableModelsCache,
   setDefaultAvailableModelsCache
 };
-//# sourceMappingURL=chunk-PS7WKRJN.js.map
+//# sourceMappingURL=chunk-6Q33PBXC.js.map

package/dist/{chunk-SI7ZBCGU.js → chunk-7QXEK3O6.js}

@@ -5,13 +5,13 @@ import {
 } from "./chunk-6T3EPABN.js";
 import {
   generateId
-} from "./chunk-WWY6V4NK.js";
+} from "./chunk-PRGNJRID.js";
 import {
   getMemoryRegistry
 } from "./chunk-PQHVC4BD.js";
 import {
   SessionMemory
-} from "./chunk-UISGEXHO.js";
+} from "./chunk-YEQE7WLP.js";
 import {
   ErrorCode,
   NexusError,
@@ -24,7 +24,7 @@ import {
   getTimeProvider,
   ok,
   setSharedMobiMemDbPathResolver
-} from "./chunk-MVGFF4OY.js";
+} from "./chunk-W5I6L4UT.js";
 import {
   nexusDataPath
 } from "./chunk-CH7QIDHQ.js";
@@ -1229,6 +1229,37 @@ var MemoryMarkdownHelper = class {
       this.logger.warn("Failed to delete Markdown file", { key, filepath, error });
     }
   }
+  /**
+   * Delete orphaned Markdown files whose key no longer exists in the store
+   * (#3112). Markdown is only cleaned on the explicit `delete()` path; the
+   * `prune` / `expireAll` / auto-expire paths delete SQLite rows without it,
+   * so the directory grows unbounded. Reconcile by forward-mapping every live
+   * key to its filename and removing any `.md` file not in that set (the
+   * forward map is lossy, but a collision only keeps a file a live key still
+   * needs). Best-effort — never throws. Returns the number of files removed.
+   */
+  reconcile(liveKeys) {
+    let removed = 0;
+    try {
+      if (!fs.existsSync(this.markdownDir)) return 0;
+      const expected = new Set(liveKeys.map((k) => this.keyToFilename(k)));
+      for (const file of fs.readdirSync(this.markdownDir)) {
+        if (!file.endsWith(".md") || expected.has(file)) continue;
+        try {
+          fs.unlinkSync(path.join(this.markdownDir, file));
+          removed++;
+        } catch (error) {
+          this.logger.warn("Failed to delete orphaned Markdown file", { file, error });
+        }
+      }
+      if (removed > 0) {
+        this.logger.debug("Reconciled Markdown dir", { removed, live: liveKeys.length });
+      }
+    } catch (error) {
+      this.logger.warn("Markdown reconcile failed", { error });
+    }
+    return removed;
+  }
   /**
    * Convert a memory key to a safe filename.
    */
@@ -1565,11 +1596,30 @@ var HybridMemoryBackend = class {
   }
   prune(olderThan) {
     this.ensureInitialized();
-    return Promise.resolve(pruneOldEntries(this.getDatabase(), olderThan, this.logger));
+    const result = pruneOldEntries(this.getDatabase(), olderThan, this.logger);
+    if (result.ok && result.value > 0) this.reconcileMarkdown();
+    return Promise.resolve(result);
   }
   expireAll() {
     this.ensureInitialized();
-    return Promise.resolve(expireAllEntries(this.getDatabase(), this.logger));
+    const result = expireAllEntries(this.getDatabase(), this.logger);
+    if (result.ok && result.value > 0) this.reconcileMarkdown();
+    return Promise.resolve(result);
+  }
+  /**
+   * Remove Markdown sidecars whose key no longer exists in SQLite (#3112).
+   * Covers every row-deletion path (prune / expire / auto-expire) uniformly,
+   * not just the explicit `delete()`. Best-effort.
+   */
+  reconcileMarkdown() {
+    try {
+      const rows = this.getDatabase().prepare("SELECT key FROM memories").all();
+      this.markdown.reconcile(rows.map((r) => r.key));
+    } catch (error) {
+      this.logger.warn("Markdown reconcile query failed", {
+        error: error instanceof Error ? error.message : String(error)
+      });
+    }
   }
   delete(key) {
     try {
@@ -5562,4 +5612,4 @@ export {
   reinitializeMemoryBackends,
   ToolMemoryManager
 };
-//# sourceMappingURL=chunk-SI7ZBCGU.js.map
+//# sourceMappingURL=chunk-7QXEK3O6.js.map