nexus-agents 2.138.0 → 2.139.0

package/README.md

@@ -99,20 +99,22 @@ Add to your Claude Desktop configuration (`~/Library/Application Support/Claude/
 
 The Orchestrator agent analyzes incoming tasks and delegates to specialized experts:
 
-| Expert                    | Specialization                                         |
-| ------------------------- | ------------------------------------------------------ |
-| **Code Expert**           | Implementation, debugging, optimization, refactoring   |
-| **Architecture Expert**   | System design, patterns, trade-offs, scalability       |
-| **Security Expert**       | Vulnerability analysis, secure coding, threat modeling |
-| **Documentation Expert**  | Technical writing, API docs, code comments             |
-| **Testing Expert**        | Test strategies, coverage analysis, test generation    |
-| **DevOps Expert**         | CI/CD, deployment, containerization                    |
-| **Research Expert**       | Literature review, state-of-the-art analysis           |
-| **PM Expert**             | Product management, requirements, priorities           |
-| **UX Expert**             | User experience, usability, accessibility              |
-| **Infrastructure Expert** | Server management, bare metal, networking              |
-
-Experts can collaborate on complex tasks. The Orchestrator combines their outputs into a single response.
+| Expert                        | Specialization                                         |
+| ----------------------------- | ------------------------------------------------------ |
+| **Code Expert**               | Implementation, debugging, optimization, refactoring   |
+| **Architecture Expert**       | System design, patterns, trade-offs, scalability       |
+| **Security Expert**           | Vulnerability analysis, secure coding, threat modeling |
+| **Documentation Expert**      | Technical writing, API docs, code comments             |
+| **Testing Expert**            | Test strategies, coverage analysis, test generation    |
+| **DevOps Expert**             | CI/CD, deployment, containerization                    |
+| **Research Expert**           | Literature review, state-of-the-art analysis           |
+| **PM Expert**                 | Product management, requirements, priorities           |
+| **UX Expert**                 | User experience, usability, accessibility              |
+| **Infrastructure Expert**     | Server management, bare metal, networking              |
+| **QA Expert**                 | Quality gates, test-plan review, defect triage         |
+| **Data-Visualization Expert** | Charts, diagrams, dashboards, data presentation        |
+
+All twelve expert types can collaborate on complex tasks. The Orchestrator combines their outputs into a single response.
 
 ### Model Adapters
 
@@ -155,7 +157,7 @@ steps:
 
 ### MCP Tools
 
-The server exposes 42 MCP tools for integration. Key tools include:
+The server exposes 46 MCP tools for integration. Key tools include:
 
 | Tool                 | Description                                    |
 | -------------------- | ---------------------------------------------- |
@@ -171,7 +173,7 @@ The server exposes 42 MCP tools for integration. Key tools include:
 | `repo_analyze`       | Analyze GitHub repository structure            |
 | `repo_security_plan` | Generate security scanning pipeline for a repo |
 
-See the root [README](../../README.md) for the complete tool list.
+See the [root README](https://github.com/nexus-substrate/nexus-agents/blob/main/README.md) for the complete tool list.
 
 ---
 
@@ -204,7 +206,7 @@ nexus-agents/
 └── pnpm-workspace.yaml
 ```
 
-See [docs/architecture/README.md](../../docs/architecture/README.md) for detailed module descriptions.
+See [docs/architecture/README.md](https://github.com/nexus-substrate/nexus-agents/blob/main/docs/architecture/README.md) for detailed module descriptions.
 
 ### Dependency Flow
 
@@ -280,7 +282,7 @@ import {
 // Create individual adapters
 const claude = createClaudeAdapter({ model: 'claude-sonnet-4-6' });
 const openai = createOpenAIAdapter({ model: 'gpt-4o' });
-const gemini = createGeminiAdapter({ model: 'gemini-1.5-pro' });
+const gemini = createGeminiAdapter({ model: 'gemini-3-pro' });
 const ollama = createOllamaAdapter({ model: 'llama3:8b' });
 
 // Or use the factory
@@ -379,11 +381,11 @@ We welcome contributions! Please see our guidelines:
 
 - Files must be under 400 lines
 - Functions must be under 50 lines
-- Test coverage must be at least 80%
+- Coverage thresholds: 60% statements/functions/lines, 50% branches (`vitest.config.ts`)
 - All code must pass linting and type checking
 
-See [CODING_STANDARDS.md](../../CODING_STANDARDS.md) for detailed guidelines.
-See [CONTRIBUTING.md](../../CONTRIBUTING.md) for contribution workflow.
+See [CODING_STANDARDS.md](https://github.com/nexus-substrate/nexus-agents/blob/main/CODING_STANDARDS.md) for detailed guidelines.
+See [CONTRIBUTING.md](https://github.com/nexus-substrate/nexus-agents/blob/main/CONTRIBUTING.md) for contribution workflow.
 
 ### Commit Convention
 
@@ -402,7 +404,7 @@ chore(scope): maintenance tasks
 
 ## License
 
-MIT - See [LICENSE](../../LICENSE) for details.
+MIT - See [LICENSE](https://github.com/nexus-substrate/nexus-agents/blob/main/LICENSE) for details.
 
 ---
 

package/dist/{child-mcp-config-LCWPKOYE.js → child-mcp-config-3WBDH4XF.js}

@@ -1,6 +1,6 @@
 import {
   createLogger
-} from "./chunk-KWZC5LFC.js";
+} from "./chunk-ALYAJ7UB.js";
 import "./chunk-NL7SZQPW.js";
 import "./chunk-DHVMSIT5.js";
 import "./chunk-ZPWHCABL.js";
@@ -60,4 +60,4 @@ export {
   generateMcpConfig,
   getDefaultAllowedTools
 };
-//# sourceMappingURL=child-mcp-config-LCWPKOYE.js.map
+//# sourceMappingURL=child-mcp-config-3WBDH4XF.js.map

package/dist/{chunk-ZJ3WGARD.js → chunk-2CPGV7OB.js}

@@ -1,9 +1,9 @@
 import {
   loadPapersRegistry
-} from "./chunk-JFKNUEZ7.js";
+} from "./chunk-MGOCRAXF.js";
 import {
   getErrorMessage
-} from "./chunk-KWZC5LFC.js";
+} from "./chunk-ALYAJ7UB.js";
 
 // src/cli/research-helpers-synthesize.ts
 import { z } from "zod";
@@ -876,4 +876,4 @@ export {
   AttributedInsightSchema,
   synthesizeResearch
 };
-//# sourceMappingURL=chunk-ZJ3WGARD.js.map
+//# sourceMappingURL=chunk-2CPGV7OB.js.map

package/dist/{chunk-DKU7O4V2.js → chunk-2GYETCPK.js}

@@ -15,7 +15,7 @@ import {
   createLogger,
   err,
   ok
-} from "./chunk-KWZC5LFC.js";
+} from "./chunk-ALYAJ7UB.js";
 
 // src/adapters/sdk/types.ts
 var PROVIDER_ENV_KEYS = {
@@ -396,4 +396,4 @@ export {
   CUSTOM_API_DEFAULT_MODEL,
   DEFAULTS
 };
-//# sourceMappingURL=chunk-DKU7O4V2.js.map
+//# sourceMappingURL=chunk-2GYETCPK.js.map

package/dist/{chunk-MXDMJGVG.js → chunk-2ML4HOUH.js}

@@ -1,7 +1,7 @@
 import {
   GitHubProvider,
   ScmError
-} from "./chunk-XUH2UFSG.js";
+} from "./chunk-FSVDHN6X.js";
 import {
   ROLE_DEFAULT_TRUST,
   ReputationCache,
@@ -11,14 +11,14 @@ import {
   gateWithReputation,
   resolveReputationGatingMode,
   sanitizeInput
-} from "./chunk-MNXLJ2VX.js";
+} from "./chunk-NHHSBKFL.js";
 import {
   CLI_SUBPROCESS_TIMEOUTS,
   createLogger,
   err,
   getTimeProvider,
   ok
-} from "./chunk-KWZC5LFC.js";
+} from "./chunk-ALYAJ7UB.js";
 
 // src/security/trust-classifier.ts
 function mapAuthorAssociation(association) {
@@ -1401,4 +1401,4 @@ export {
   IssueTriage,
   createIssueTriage
 };
-//# sourceMappingURL=chunk-MXDMJGVG.js.map
+//# sourceMappingURL=chunk-2ML4HOUH.js.map

package/dist/{chunk-Q3EZN3Z2.js → chunk-4YCIRCEJ.js}

@@ -2,7 +2,7 @@ import {
   TASK_CATEGORIES,
   getAdaptiveBonus,
   getOutcomeStore
-} from "./chunk-KWZC5LFC.js";
+} from "./chunk-ALYAJ7UB.js";
 
 // src/cli/doctor-deep.ts
 var CLI_NAMES = ["claude", "gemini", "codex", "opencode"];
@@ -106,4 +106,4 @@ export {
   runDeepDiagnostics,
   formatDeepDiagnostics
 };
-//# sourceMappingURL=chunk-Q3EZN3Z2.js.map
+//# sourceMappingURL=chunk-4YCIRCEJ.js.map

package/dist/{chunk-J2HWO3J3.js → chunk-63XGRODH.js}

@@ -5,17 +5,17 @@ import {
 } from "./chunk-6T3EPABN.js";
 import {
   SessionMemory
-} from "./chunk-D2XWKFZ2.js";
+} from "./chunk-IVUFSLFJ.js";
 import {
   StatsOnlyAdapter,
   ensureSharedMemoryRegistry
-} from "./chunk-RER74KD6.js";
+} from "./chunk-PINS44XA.js";
 import {
   getMemoryRegistry
-} from "./chunk-2XRPKJKX.js";
+} from "./chunk-KSQSWEFH.js";
 import {
   generateId
-} from "./chunk-K62WRHHK.js";
+} from "./chunk-PI5QEJ54.js";
 import {
   ErrorCode,
   NexusError,
@@ -28,7 +28,7 @@ import {
   getTimeProvider,
   ok,
   setSharedMobiMemDbPathResolver
-} from "./chunk-KWZC5LFC.js";
+} from "./chunk-ALYAJ7UB.js";
 import {
   nexusDataPath
 } from "./chunk-DHVMSIT5.js";
@@ -3835,7 +3835,7 @@ var SemanticMemoryImpl = class {
       tags: ["semantic", fact.domain, fact.subject]
     };
     if (fact.validUntil !== void 0) {
-      meta.ttl = fact.validUntil.getTime() - getTimeProvider().now();
+      meta.ttl = Math.max(1, fact.validUntil.getTime() - getTimeProvider().now());
     }
     return this.backend.store(`semantic:${fact.factId}`, fact, meta);
   }
@@ -3957,7 +3957,7 @@ var KnowledgeVaultImpl = class {
     const tags = ["vault", entry.category, entry.importance, ...entry.tags ?? []];
     const meta = { importance, tags };
     if (entry.expiresAt !== void 0) {
-      meta.ttl = entry.expiresAt.getTime() - getTimeProvider().now();
+      meta.ttl = Math.max(1, entry.expiresAt.getTime() - getTimeProvider().now());
     }
     return this.backend.store(`vault:${entry.vaultId}`, entry, meta);
   }
@@ -5552,4 +5552,4 @@ export {
   reinitializeMemoryBackends,
   ToolMemoryManager
 };
-//# sourceMappingURL=chunk-J2HWO3J3.js.map
+//# sourceMappingURL=chunk-63XGRODH.js.map