neuronlayer 0.1.9 → 0.2.0

package/package.json

@@ -1,12 +1,16 @@
 {
   "name": "neuronlayer",
-  "version": "0.1.9",
+  "version": "0.2.0",
   "description": "MCP server that gives AI assistants persistent understanding of your codebase",
   "type": "module",
   "main": "dist/index.js",
   "bin": {
     "neuronlayer": "dist/index.js"
   },
+  "files": [
+    "dist/**",
+    "wasm/**"
+  ],
   "scripts": {
     "build": "node esbuild.config.js",
     "dev": "node --watch dist/index.js",
@@ -40,6 +44,7 @@
     "better-sqlite3": "^11.8.0",
     "chokidar": "^4.0.0",
     "glob": "^13.0.0",
+    "tree-sitter-wasms": "^0.1.13",
     "web-tree-sitter": "^0.24.0"
   },
   "devDependencies": {

package/esbuild.config.js

@@ -1,26 +0,0 @@
-import { build } from 'esbuild';
-
-const commonOptions = {
-  bundle: true,
-  platform: 'node',
-  target: 'node18',
-  format: 'esm',
-  sourcemap: true,
-  external: [
-    'better-sqlite3',    // Native module
-    '@xenova/transformers', // Large, keep external
-    'chokidar',          // Uses CommonJS require
-    'glob',              // Keep external
-    'web-tree-sitter'    // WASM module
-  ]
-};
-
-// Build main MCP server
-await build({
-  ...commonOptions,
-  entryPoints: ['src/index.ts'],
-  outfile: 'dist/index.js',
-  banner: { js: '#!/usr/bin/env node' },
-});
-
-console.log('Build complete!');

package/src/cli/commands.ts

@@ -1,573 +0,0 @@
-import { ProjectManager, type ProjectInfo } from '../core/project-manager.js';
-import { ADRExporter } from '../core/adr-exporter.js';
-import { initializeDatabase } from '../storage/database.js';
-import { Tier2Storage } from '../storage/tier2.js';
-import { join } from 'path';
-import { existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';
-import { homedir } from 'os';
-
-const projectManager = new ProjectManager();
-
-interface CommandResult {
-  success: boolean;
-  message: string;
-  data?: unknown;
-}
-
-// List all projects
-export function listProjects(): CommandResult {
-  const projects = projectManager.listProjects();
-  const activeProject = projectManager.getActiveProject();
-
-  if (projects.length === 0) {
-    return {
-      success: true,
-      message: 'No projects registered. Use "neuronlayer projects add <path>" to add one.'
-    };
-  }
-
-  const lines = ['Registered Projects:', ''];
-  for (const project of projects) {
-    const isActive = activeProject?.id === project.id ? ' (active)' : '';
-    lines.push(`  ${project.name}${isActive}`);
-    lines.push(`    ID: ${project.id}`);
-    lines.push(`    Path: ${project.path}`);
-    lines.push(`    Files: ${project.totalFiles}, Decisions: ${project.totalDecisions}`);
-    lines.push(`    Languages: ${project.languages.join(', ') || 'N/A'}`);
-    lines.push('');
-  }
-
-  return {
-    success: true,
-    message: lines.join('\n'),
-    data: projects
-  };
-}
-
-// Add a project
-export function addProject(projectPath: string): CommandResult {
-  try {
-    const projectInfo = projectManager.registerProject(projectPath);
-    projectManager.setActiveProject(projectInfo.id);
-
-    return {
-      success: true,
-      message: `Project "${projectInfo.name}" registered and set as active.\nID: ${projectInfo.id}\nData directory: ${projectInfo.dataDir}`,
-      data: projectInfo
-    };
-  } catch (error) {
-    return {
-      success: false,
-      message: `Failed to add project: ${error instanceof Error ? error.message : String(error)}`
-    };
-  }
-}
-
-// Remove a project
-export function removeProject(projectId: string): CommandResult {
-  const project = projectManager.getProject(projectId);
-
-  if (!project) {
-    return {
-      success: false,
-      message: `Project not found: ${projectId}`
-    };
-  }
-
-  const removed = projectManager.removeProject(projectId);
-
-  return {
-    success: removed,
-    message: removed
-      ? `Project "${project.name}" removed from registry.`
-      : `Failed to remove project.`
-  };
-}
-
-// Switch to a project
-export function switchProject(projectId: string): CommandResult {
-  const project = projectManager.getProject(projectId);
-
-  if (!project) {
-    return {
-      success: false,
-      message: `Project not found: ${projectId}`
-    };
-  }
-
-  const switched = projectManager.setActiveProject(projectId);
-
-  return {
-    success: switched,
-    message: switched
-      ? `Switched to project: ${project.name}`
-      : `Failed to switch project.`
-  };
-}
-
-// Discover projects
-export function discoverProjects(): CommandResult {
-  const discovered = projectManager.discoverProjects();
-
-  if (discovered.length === 0) {
-    return {
-      success: true,
-      message: 'No projects discovered in common locations.'
-    };
-  }
-
-  const lines = [`Discovered ${discovered.length} potential projects:`, ''];
-  for (const path of discovered) {
-    const name = path.split(/[/\\]/).pop();
-    lines.push(`  ${name}`);
-    lines.push(`    ${path}`);
-    lines.push('');
-  }
-  lines.push('Use "neuronlayer projects add <path>" to register a project.');
-
-  return {
-    success: true,
-    message: lines.join('\n'),
-    data: discovered
-  };
-}
-
-// Export decisions to ADR
-export function exportDecisions(
-  projectPath?: string,
-  options: { outputDir?: string; format?: 'madr' | 'nygard' | 'simple' } = {}
-): CommandResult {
-  // Determine project path
-  let targetPath = projectPath;
-  if (!targetPath) {
-    const activeProject = projectManager.getActiveProject();
-    if (!activeProject) {
-      return {
-        success: false,
-        message: 'No project specified and no active project. Use "neuronlayer projects switch <id>" first.'
-      };
-    }
-    targetPath = activeProject.path;
-  }
-
-  // Get project info
-  const projectInfo = projectManager.getProjectByPath(targetPath);
-  if (!projectInfo) {
-    return {
-      success: false,
-      message: `Project not registered: ${targetPath}. Use "neuronlayer projects add ${targetPath}" first.`
-    };
-  }
-
-  // Open database and get decisions (check both new and old names)
-  let dbPath = join(projectInfo.dataDir, 'neuronlayer.db');
-  if (!existsSync(dbPath)) {
-    // Fall back to old name for backwards compatibility
-    const oldDbPath = join(projectInfo.dataDir, 'memorylayer.db');
-    if (existsSync(oldDbPath)) {
-      dbPath = oldDbPath;
-    } else {
-      return {
-        success: false,
-        message: `Project database not found. Has the project been indexed?`
-      };
-    }
-  }
-
-  const db = initializeDatabase(dbPath);
-  const tier2 = new Tier2Storage(db);
-  const decisions = tier2.getAllDecisions();
-  db.close();
-
-  if (decisions.length === 0) {
-    return {
-      success: true,
-      message: 'No decisions to export.'
-    };
-  }
-
-  // Export
-  const exporter = new ADRExporter(targetPath);
-  const exportedFiles = exporter.exportAllDecisions(decisions, {
-    outputDir: options.outputDir,
-    format: options.format,
-    includeIndex: true
-  });
-
-  return {
-    success: true,
-    message: `Exported ${exportedFiles.length} ADR files to ${options.outputDir || join(targetPath, 'docs', 'decisions')}`,
-    data: exportedFiles
-  };
-}
-
-// Show project info
-export function showProject(projectId?: string): CommandResult {
-  let project: ProjectInfo | null;
-
-  if (projectId) {
-    project = projectManager.getProject(projectId);
-  } else {
-    project = projectManager.getActiveProject();
-  }
-
-  if (!project) {
-    return {
-      success: false,
-      message: projectId
-        ? `Project not found: ${projectId}`
-        : 'No active project. Use "neuronlayer projects switch <id>" first.'
-    };
-  }
-
-  const lines = [
-    `Project: ${project.name}`,
-    `ID: ${project.id}`,
-    `Path: ${project.path}`,
-    `Data Directory: ${project.dataDir}`,
-    `Files Indexed: ${project.totalFiles}`,
-    `Decisions: ${project.totalDecisions}`,
-    `Languages: ${project.languages.join(', ') || 'N/A'}`,
-    `Last Accessed: ${new Date(project.lastAccessed).toLocaleString()}`
-  ];
-
-  return {
-    success: true,
-    message: lines.join('\n'),
-    data: project
-  };
-}
-
-// Helper to configure an MCP client
-function configureMCPClient(
-  clientName: string,
-  configPath: string,
-  serverName: string,
-  projectPath: string
-): { success: boolean; message: string } {
-  let config: { mcpServers?: Record<string, unknown> } = { mcpServers: {} };
-
-  try {
-    if (existsSync(configPath)) {
-      const content = readFileSync(configPath, 'utf-8');
-      config = JSON.parse(content);
-    } else {
-      // Create directory if needed
-      const sep = process.platform === 'win32' ? '\\' : '/';
-      const configDir = configPath.substring(0, configPath.lastIndexOf(sep));
-      mkdirSync(configDir, { recursive: true });
-    }
-  } catch {
-    // Config doesn't exist or is invalid, start fresh
-  }
-
-  if (!config.mcpServers) {
-    config.mcpServers = {};
-  }
-
-  config.mcpServers[serverName] = {
-    command: 'npx',
-    args: ['-y', 'neuronlayer', '--project', projectPath]
-  };
-
-  try {
-    writeFileSync(configPath, JSON.stringify(config, null, 2));
-    return { success: true, message: `${clientName}: ${configPath}` };
-  } catch (err) {
-    return { success: false, message: `${clientName}: Failed - ${err instanceof Error ? err.message : String(err)}` };
-  }
-}
-
-// Helper to configure project-local .mcp.json for Claude Code
-function configureProjectMCP(
-  configPath: string,
-  projectPath: string
-): { success: boolean; message: string } {
-  let config: { mcpServers?: Record<string, unknown> } = { mcpServers: {} };
-
-  try {
-    if (existsSync(configPath)) {
-      const content = readFileSync(configPath, 'utf-8');
-      config = JSON.parse(content);
-    }
-  } catch {
-    // Config doesn't exist or is invalid, start fresh
-  }
-
-  if (!config.mcpServers) {
-    config.mcpServers = {};
-  }
-
-  // Use simple name since this is project-specific
-  config.mcpServers['neuronlayer'] = {
-    command: 'npx',
-    args: ['-y', 'neuronlayer', '--project', '.']
-  };
-
-  try {
-    writeFileSync(configPath, JSON.stringify(config, null, 2));
-    return { success: true, message: `Claude Code: ${configPath} (project-local)` };
-  } catch (err) {
-    return { success: false, message: `Claude Code: Failed - ${err instanceof Error ? err.message : String(err)}` };
-  }
-}
-
-// Initialize neuronlayer for current project + auto-configure Claude Desktop & OpenCode
-export function initProject(projectPath?: string): CommandResult {
-  const targetPath = projectPath || process.cwd();
-
-  // 1. Register the project
-  const addResult = addProject(targetPath);
-  if (!addResult.success) {
-    return addResult;
-  }
-
-  const projectInfo = addResult.data as ProjectInfo;
-  const serverName = `neuronlayer-${projectInfo.name.toLowerCase().replace(/[^a-z0-9]/g, '-')}`;
-  const platform = process.platform;
-
-  const configuredClients: string[] = [];
-  const failedClients: string[] = [];
-
-  // 2. Configure Claude Desktop
-  let claudeConfigPath: string;
-  if (platform === 'win32') {
-    claudeConfigPath = join(homedir(), 'AppData', 'Roaming', 'Claude', 'claude_desktop_config.json');
-  } else if (platform === 'darwin') {
-    claudeConfigPath = join(homedir(), 'Library', 'Application Support', 'Claude', 'claude_desktop_config.json');
-  } else {
-    claudeConfigPath = join(homedir(), '.config', 'claude', 'claude_desktop_config.json');
-  }
-
-  const claudeResult = configureMCPClient('Claude Desktop', claudeConfigPath, serverName, targetPath);
-  if (claudeResult.success) {
-    configuredClients.push(claudeResult.message);
-  } else {
-    failedClients.push(claudeResult.message);
-  }
-
-  // 3. Configure OpenCode
-  const openCodeConfigPath = join(homedir(), '.opencode', 'config.json');
-  const openCodeResult = configureMCPClient('OpenCode', openCodeConfigPath, serverName, targetPath);
-  if (openCodeResult.success) {
-    configuredClients.push(openCodeResult.message);
-  } else {
-    failedClients.push(openCodeResult.message);
-  }
-
-  // 4. Configure Claude Code (CLI) - use project-local .mcp.json
-  // This ensures only the current project's NeuronLayer connects
-  const claudeCodeConfigPath = join(targetPath, '.mcp.json');
-  const claudeCodeResult = configureProjectMCP(claudeCodeConfigPath, targetPath);
-  if (claudeCodeResult.success) {
-    configuredClients.push(claudeCodeResult.message);
-  }
-
-  // 5. Configure Cursor
-  let cursorConfigPath: string;
-  if (platform === 'win32') {
-    cursorConfigPath = join(homedir(), 'AppData', 'Roaming', 'Cursor', 'User', 'globalStorage', 'cursor.mcp', 'mcp.json');
-  } else if (platform === 'darwin') {
-    cursorConfigPath = join(homedir(), 'Library', 'Application Support', 'Cursor', 'User', 'globalStorage', 'cursor.mcp', 'mcp.json');
-  } else {
-    cursorConfigPath = join(homedir(), '.config', 'Cursor', 'User', 'globalStorage', 'cursor.mcp', 'mcp.json');
-  }
-
-  const cursorResult = configureMCPClient('Cursor', cursorConfigPath, serverName, targetPath);
-  if (cursorResult.success) {
-    configuredClients.push(cursorResult.message);
-  }
-
-  // Build result message
-  let message = `
-NeuronLayer initialized!
-
-Project: ${projectInfo.name}
-Path: ${targetPath}
-Data: ${projectInfo.dataDir}
-
-Configured MCP Clients:
-${configuredClients.map(c => '  ✓ ' + c).join('\n')}
-`;
-
-  if (failedClients.length > 0) {
-    message += `\nFailed:\n${failedClients.map(c => '  ✗ ' + c).join('\n')}`;
-  }
-
-  message += `\n\nRestart your AI tools to activate.`;
-
-  return {
-    success: true,
-    message: message.trim(),
-    data: { projectInfo, serverName, configuredClients }
-  };
-}
-
-// Print help
-export function printHelp(): void {
-  console.log(`
-NeuronLayer CLI - Code Intelligence for AI Coding Assistants
-
-USAGE:
-  neuronlayer [command] [options]
-
-COMMANDS:
-  init [path]               Initialize project + auto-configure AI tools
-  serve [options]           Start HTTP API server (for non-MCP tools)
-  (no command)              Start MCP server
-  projects list             List all registered projects
-  projects add <path>       Add a project to the registry
-  projects remove <id>      Remove a project from the registry
-  projects switch <id>      Set a project as active
-  projects show [id]        Show project details
-  projects discover         Discover projects in common locations
-  export [options]          Export decisions to ADR files
-  help                      Show this help message
-
-OPTIONS:
-  --project, -p <path>      Path to the project directory
-  --port <number>           Port for HTTP server (default: 3333)
-  --output, -o <dir>        Output directory for exports
-  --format <type>           ADR format: madr, nygard, simple
-
-EXAMPLES:
-  # Quick setup (auto-configures Claude Desktop)
-  cd /path/to/project
-  neuronlayer init
-
-  # Start MCP server
-  neuronlayer --project /path/to/project
-
-  # List all projects
-  neuronlayer projects list
-
-  # Add a new project
-  neuronlayer projects add /path/to/my-project
-
-  # Switch active project
-  neuronlayer projects switch abc123
-
-  # Export decisions to ADR files
-  neuronlayer export --format madr
-
-  # Discover projects
-  neuronlayer projects discover
-
-  # Start HTTP API server (for tools without MCP support)
-  neuronlayer serve --project /path/to/project
-  neuronlayer serve --port 8080
-
-For more information, visit: https://github.com/abhisavakar/neuronlayer
-`);
-}
-
-// Parse and execute CLI commands
-export function executeCLI(args: string[]): void {
-  const command = args[0];
-  const subcommand = args[1];
-
-  switch (command) {
-    case 'help':
-    case '--help':
-    case '-h':
-      printHelp();
-      break;
-
-    case 'init': {
-      const path = args[1];
-      const result = initProject(path);
-      console.log(result.message);
-      if (!result.success) process.exit(1);
-      break;
-    }
-
-    case 'projects': {
-      switch (subcommand) {
-        case 'list':
-          console.log(listProjects().message);
-          break;
-        case 'add': {
-          const path = args[2];
-          if (!path) {
-            console.error('Error: Project path required.');
-            console.error('Usage: neuronlayer projects add <path>');
-            process.exit(1);
-          }
-          const result = addProject(path);
-          console.log(result.message);
-          if (!result.success) process.exit(1);
-          break;
-        }
-        case 'remove': {
-          const id = args[2];
-          if (!id) {
-            console.error('Error: Project ID required.');
-            console.error('Usage: neuronlayer projects remove <id>');
-            process.exit(1);
-          }
-          const result = removeProject(id);
-          console.log(result.message);
-          if (!result.success) process.exit(1);
-          break;
-        }
-        case 'switch': {
-          const id = args[2];
-          if (!id) {
-            console.error('Error: Project ID required.');
-            console.error('Usage: neuronlayer projects switch <id>');
-            process.exit(1);
-          }
-          const result = switchProject(id);
-          console.log(result.message);
-          if (!result.success) process.exit(1);
-          break;
-        }
-        case 'show': {
-          const id = args[2];
-          const result = showProject(id);
-          console.log(result.message);
-          if (!result.success) process.exit(1);
-          break;
-        }
-        case 'discover':
-          console.log(discoverProjects().message);
-          break;
-        default:
-          console.error(`Unknown subcommand: ${subcommand}`);
-          console.error('Available: list, add, remove, switch, show, discover');
-          process.exit(1);
-      }
-      break;
-    }
-
-    case 'export': {
-      // Parse export options
-      let outputDir: string | undefined;
-      let format: 'madr' | 'nygard' | 'simple' | undefined;
-
-      for (let i = 1; i < args.length; i++) {
-        const arg = args[i];
-        const nextArg = args[i + 1];
-        if ((arg === '--output' || arg === '-o') && nextArg) {
-          outputDir = nextArg;
-          i++;
-        } else if (arg === '--format' && nextArg) {
-          format = nextArg as 'madr' | 'nygard' | 'simple';
-          i++;
-        }
-      }
-
-      const result = exportDecisions(undefined, { outputDir, format });
-      console.log(result.message);
-      if (!result.success) process.exit(1);
-      break;
-    }
-
-    default:
-      // If no command matches, it might be the default MCP server mode
-      // Return without handling - let main() handle it
-      return;
-  }
-
-  process.exit(0);
-}