nemar-cli 0.9.8-dev.1966 → 0.9.8-dev.1968

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Files changed (2) hide show
  1. package/dist/index.js +1 -1
  2. package/package.json +1 -1
package/dist/index.js CHANGED
@@ -102,7 +102,7 @@ ${B.dim(`eta: ${D.eta}`)}`:"";process.stderr.write(`${F}
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  ${$} ${D.message}
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  ${Q}${J}
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  ${F}
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106
106
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107
107
 
108
108
  gh CLI failed: ${Y.error||"could not get token"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "nemar-cli",
3
- "version": "0.9.8-dev.1966",
3
+ "version": "0.9.8-dev.1968",
4
4
  "description": "CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",
5
5
  "type": "module",
6
6
  "main": "dist/index.js",