nemar-cli 0.9.5-dev.1826 → 0.9.5-dev.1842

package/dist/index.js

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 Exemplar Fleet (${Q.length})
-`));for(let J of Q)try{let Y=await VD(J.xx_id);console.log(`  ${J.xx_id.padEnd(10)} ${J.modality.padEnd(6)} <- ${J.source_id.padEnd(10)} ${H.green(Y.visibility)}  doi=${Y.concept_doi??"none"}`)}catch(Y){if(Y instanceof g&&Y.statusCode===404)console.log(`  ${J.xx_id.padEnd(10)} ${J.modality.padEnd(6)} <- ${J.source_id.padEnd(10)} ${H.dim("not created")}`);else console.log(`  ${J.xx_id.padEnd(10)} ${J.modality.padEnd(6)} <- ${J.source_id.padEnd(10)} ${H.red(`status check failed (${d(Y)})`)}`)}});hX.command("remint-dois").description("Re-mint an exemplar's sandbox concept DOI (idempotent)").argument("<xx-id>","Exemplar dataset id (e.g., xx099900)").action(async(D)=>{if(!z0())return;let F=O(`Re-minting DOIs for ${D}...`).start();try{let $=await sp(D);F.succeed(`Re-minted ${$.concept_doi} (status: ${$.status})`);for(let Q of $.warnings??[])console.log(H.yellow(`  ${Q}`))}catch($){s0($,F,"Failed to re-mint exemplar DOIs",{400:"Not an exemplar dataset",403:"Exemplar DOI re-mint is disabled in production",404:"Dataset not found"}),process.exit(1)}});_0.addCommand(hX);function En(D,F){let $=D.enrichment.status,Q=$==="ok"?H.green("enrich:ok"):$==="failed"?H.red("enrich:failed"):H.dim("enrich:skipped"),J=D.sync.status,Y=J==="ok"?H.green("sync:ok"):J==="failed"?H.red("sync:failed"):H.dim("sync:skipped"),X=D.sync.metadata_columns_written===!0?H.green("cols:written"):D.sync.metadata_columns_error?H.red("cols:failed"):"",G=F?.showRef&&D.enrichment.ref?H.dim(`@${D.enrichment.ref}`):"";if(console.log(`  ${D.dataset_id.padEnd(12)} ${Q}${G}  ${Y}  ${X}`),D.enrichment.error)console.log(H.red(`    enrichment: ${D.enrichment.error}`));if(D.sync.metadata_columns_error)console.log(H.red(`    metadata columns: ${D.sync.metadata_columns_error}`))}var uX=new S0("fleet").description("Governance drift reporting and enforcement (epic #713)");uX.command("drift").description("Report dataset repos that are off the governance spec").option("--prefix <prefix>","Filter datasets by id prefix (e.g. nm, on)").option("--visibility <vis>","Filter by visibility: public or private").option("--limit <n>","Max repos to scan (default 25, max 50)","25").option("--json","Output raw JSON").action(async(D)=>{if(!m0())console.log(H.red("Error: Not authenticated")),process.exit(1);if(D.visibility&&!["public","private"].includes(D.visibility))console.log(H.red("Error: --visibility must be public or private")),process.exit(1);let F=O("Scanning fleet for drift...").start();try{let $=await Bd({prefix:D.prefix,visibility:D.visibility,limit:Number.parseInt(D.limit,10)||25});if(F.stop(),D.json){console.log(JSON.stringify($,null,2));return}console.log(),console.log(H.bold(`Fleet drift (scanned ${$.scanned}):`));let Q=["PUBLIC_UNPROTECTED","RED_REQUIRED_CHECK","CONTEXT_NAME_MISMATCH","MISSING_REQUIRED_WORKFLOW","PRIVATE_WITH_STRAY_READ","DEFAULT_BRANCH_OUTLIER","DEPRECATED_WORKFLOW_PRESENT","COMPLIANT"];for(let J of Q){let Y=$.buckets[J];if(!Y||Y.length===0)continue;let X=J==="COMPLIANT"?H.green:H.yellow;if(console.log(`  ${X(J.padEnd(28))} ${Y.length}`),J!=="COMPLIANT"){let G=Y.slice(0,20).join(", ");console.log(H.dim(`    ${G}${Y.length>20?` ... +${Y.length-20}`:""}`))}}console.log()}catch($){if($ instanceof g)F.fail($.message);else F.fail("Failed to scan fleet"),console.log(H.red(`  ${$.message}`));process.exit(1)}});uX.command("enforce").description("Bring dataset repos to the governance spec (single or --all). Dry-run by default.").argument("[dataset-id]","Dataset to enforce (omit when using --all)").option("--all","Bulk enforce across a filtered set (owner-only)").option("--apply","Actually apply changes (default is a dry run)").option("--prefix <prefix>","Bulk: filter by id prefix").option("--visibility <vis>","Bulk: filter by visibility (public|private)").option("--limit <n>","Bulk: max repos (default 25, max 50)","25").option("--json","Output raw JSON").action(async(D,F)=>{if(!m0())console.log(H.red("Error: Not authenticated")),process.exit(1);if(!D&&!F.all)console.log(H.red("Error: provide a dataset-id or use --all")),process.exit(1);if(D&&F.all)console.log(H.red("Error: provide a dataset-id OR --all, not both")),process.exit(1);let $=!F.apply,Q=$?"[dry-run] ":"",J=O(`${Q}Enforcing spec...`).start();try{if(D){let Y=await P5(D,$);if(J.succeed(`${Q}${D} (${Y.result.visibility})`),F.json){console.log(JSON.stringify(Y,null,2));return}for(let[X,G]of Object.entries(Y.result.steps)){let B=G.status==="ok"?H.green:G.status==="skipped"?H.yellow:H.red;console.log(`  ${B(G.status.padEnd(8))} ${X}${G.detail?H.dim(` (${G.detail})`):""}`)}}else{let Y=await Wd({prefix:F.prefix,visibility:F.visibility,limit:Number.parseInt(F.limit,10)||25,dryRun:$});if(J.succeed(`${Q}processed ${Y.count} repo(s)`),F.json){console.log(JSON.stringify(Y,null,2));return}for(let X of Y.results){if(X.error){console.log(`  ${H.red("error")}  ${X.dataset_id}: ${X.error}`);continue}let G=Object.entries(X.steps??{}).filter(([,W])=>W.status!=="ok").map(([W,q])=>`${W}=${q.status}`),B=G.length?H.yellow("drift"):H.green("ok");console.log(`  ${B}    ${X.dataset_id}${G.length?H.dim(` (${G.join(", ")})`):""}`)}}}catch(Y){if(Y instanceof g)J.fail(Y.message);else J.fail("Enforcement failed"),console.log(H.red(`  ${Y.message}`));process.exit(1)}});var m5=(D)=>new Promise((F)=>setTimeout(F,D));async function bk0(D,F,$){let Q=Date.now()+F,J="no probe completed";while(Date.now()<Q){try{let Y=(await P5(D,!0)).result?.steps?.branch_ruleset;if(Y?.status==="ok")return{status:"green"};if(Y?.detail)J=Y.detail}catch(Y){J=Y instanceof g?Y.message:String(Y)}await m5($)}return{status:"timeout",detail:J}}uX.command("revalidate").description("Re-run BIDS validation on main HEAD for unprotected datasets, then optionally enforce (epic #713)").argument("[dataset-id]","Dataset to revalidate (omit when using --all/--prefix)").option("--all","Revalidate across unprotected public datasets").option("--prefix <prefix>","Filter by id prefix (with --all), e.g. nm000 / on").option("--enforce","After a dataset goes green, run enforce (dry-run unless --apply)").option("--apply","With --enforce, actually apply the ruleset (default is a dry run)").option("--force","Override the live-dataset guard (nm000103-107)").option("--limit <n>","Max repos for --all/--prefix (default 25)","25").option("--json","Output raw JSON").action(async(D,F)=>{if(!m0())console.log(H.red("Error: Not authenticated")),process.exit(1);let $=Boolean(F.all||!D&&F.prefix);if(!D&&!$)console.log(H.red("Error: provide a dataset-id, or --all/--prefix")),process.exit(1);let Q;if(D)Q=[D];else{let q=O("Fetching dataset list...").start();try{let K=[];for(let z=0;;z+=200){let E=await k5({limit:200,offset:z});if(K.push(...E.datasets),E.datasets.length<200||K.length>=E.total_count)break}let Z=Number.parseInt(F.limit,10)||25;Q=hd(K,{prefix:F.prefix}).slice(0,Z),q.succeed(`${Q.length} target(s) (from ${K.length} datasets)`)}catch(K){s0(K,q,"Failed to fetch datasets");return}}let J=Boolean(F.enforce),Y=Boolean(F.apply),X={revalidated:0,green:0,locked:0,stillRed:0,skipped:0,errors:0},G=[],B=[],W=0;for(let q of Q){if(W++,lz.has(q)&&!F.force){console.log(`  [${W}/${Q.length}] ${H.dim(`${q}: skip (live; use --force)`)}`),X.skipped++;continue}try{let K=await Hd(q,F.force);if(G.push(K),K.skipped)console.log(`  [${W}/${Q.length}] ${q}: ${H.dim(`skipped (${K.skipped})`)}`),X.skipped++;else X.revalidated++,B.push(q),console.log(`  [${W}/${Q.length}] ${q}: ${H.cyan(`revalidating (${K.triggered_by})`)}`)}catch(K){X.errors++,console.log(`  [${W}/${Q.length}] ${q}: ${H.red(K instanceof g?K.message:String(K))}`)}if(W<Q.length)await m5(4000)}if(J&&B.length>0)if(D){let q=B[0],K=O(`Waiting for ${q} validation to land...`).start(),Z=await bk0(q,300000,15000);if(Z.status!=="green")K.warn(`${q}: not green within 5m \u2014 last: ${Z.detail} (real errors or still running)`),X.stillRed++;else if(X.green++,!Y)K.succeed(`${q}: green (would lock; pass --apply)`);else{let z=await P5(q,!1);if(z.result?.steps?.branch_ruleset?.status==="ok")K.succeed(`${q}: LOCKED`),X.locked++;else K.warn(`${q}: enforce ${z.result?.steps?.branch_ruleset?.status??"?"}`)}}else{let q=O("Waiting ~90s for validations to drain...").start();await m5(90000),q.text="Enforcing green datasets...";for(let K of B)try{if((await P5(K,!0)).result?.steps?.branch_ruleset?.status!=="ok"){X.stillRed++;continue}if(X.green++,Y){if((await P5(K,!1)).result?.steps?.branch_ruleset?.status==="ok")X.locked++}}catch{X.errors++}q.stop()}if(F.json){console.log(JSON.stringify({tally:X,raw:G},null,2));return}console.log(),console.log(H.cyan(`Done: revalidated=${X.revalidated} green=${X.green} locked=${X.locked} still-red=${X.stillRed} skipped=${X.skipped} errors=${X.errors}`))});_0.addCommand(uX);var Tn=new S0("reindex").description("Refresh dataset metadata: enrichment + nemar.org sync + first-class D1 columns");Tn.argument("[dataset-id]","Dataset ID to reindex (e.g., nm000103)").option("--all","Reindex every dataset with a GitHub repo").option("--missing-metadata","Reindex only datasets with NULL metadata columns").option("--stale","Reindex only datasets whose metadata is older than --older-than days").option("--older-than <days>","Threshold in days. Default 30 for --stale, 1 (24h) for --missing-metadata recency guard.").option("--skip-enrichment","Skip the LLM enrichment step").option("--skip-sync","Skip the nemar.org sync + D1 column refresh step").option("--ref <ref>","Ref to enrich from (single-dataset only; default: main)").option("--dry-run","List matched datasets without firing the reindex (bulk only)").action(async(D,F)=>{if(!z0())return;let $=[F.all,F.missingMetadata,F.stale].filter(Boolean).length;if(D&&$>0)console.error(H.red("Provide either a dataset-id OR a bulk flag (--all/--missing-metadata/--stale), not both")),process.exit(1);if(!D&&$===0)console.error(H.red("Provide a dataset-id or one of: --all, --missing-metadata, --stale")),process.exit(1);if($>1)console.error(H.red("Use only one of --all, --missing-metadata, --stale")),process.exit(1);if(F.skipEnrichment&&F.skipSync)console.error(H.red("--skip-enrichment and --skip-sync cannot both be set")),process.exit(1);if(D){let K=O(`Reindexing ${D}...`).start();try{let Z={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,...F.ref&&{ref:F.ref}},z=await w5(D,Z),E=z.enrichment.status!=="failed"&&z.sync.status!=="failed";if(E)K.succeed(`${D} reindexed`);else K.warn(`${D} reindexed with errors`);if(console.log(),En(z,{showRef:!0}),!E)process.exit(1)}catch(Z){K.fail(`Failed to reindex ${D}`),console.error(H.red(d(Z))),process.exit(1)}return}let Q=F.all?"all":F.missingMetadata?"missing-metadata":"stale",J={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,dry_run:F.dryRun===!0};if(F.olderThan!==void 0){let K=Number.parseInt(F.olderThan,10);if(!Number.isFinite(K)||K<0)console.error(H.red(`Invalid --older-than: "${F.olderThan}"`)),process.exit(1);J.older_than_days=K}else if(Q==="missing-metadata")J.older_than_days=1;else if(Q==="stale")J.older_than_days=30;let Y=F.dryRun?`Listing ${Q} datasets...`:`Reindexing ${Q} datasets...`,X=O(Y).start(),G;try{G=await Dd(Q,J)}catch(K){X.fail("Bulk reindex failed"),console.error(H.red(d(K))),process.exit(1)}if(G.dry_run){if(X.succeed(`${G.total} datasets match filter=${Q} (dry run, no changes)`),G.datasets)for(let K of G.datasets)console.log(H.dim(`  - ${K}`));return}let B=G.results??[],W=B.filter((K)=>K.enrichment.status!=="failed"&&K.sync.status!=="failed").length,q=B.length-W;if(q===0)X.succeed(`${B.length}/${B.length} datasets reindexed in ${(G.elapsed_ms/1000).toFixed(1)}s`);else X.warn(`${W}/${B.length} ok; ${q} failed in ${(G.elapsed_ms/1000).toFixed(1)}s`);console.log();for(let K of B)En(K);if(q>0)process.exit(1)});_0.addCommand(Tn);var gk0=new S0("availability-report").description("Report how much of a dataset's declared data is present in S3, and exactly which files are missing + why (#1000). Dry-run by default. --all backfills every managed dataset (#1001).").argument("[dataset-id]","Dataset ID (e.g., nm000103)").option("--write","Commit the report to .nemar/availability-report.json on main (default: preview only)").option("--all","Backfill every managed dataset instead of a single one (#1001)").option("--missing-only","With --all, sweep only datasets already known incomplete (data_complete=0)").option("--limit <n>","With --all, datasets per batch (server clamps to [1,10])","10").option("--reset","With --all, clear every stamped sweep row so it re-sweeps from scratch").option("--verbose","With --all, print per-batch progress").option("--json","Output raw JSON").action(async(D,F)=>{if(!z0())return;if(!D&&!F.all)console.error(H.red("Provide a dataset-id or --all")),process.exit(1);if(D&&(F.all||F.reset||F.missingOnly))console.error(H.red("--all/--reset/--missing-only cannot be combined with a dataset id")),process.exit(1);if(D){let W=O(F.write?`Generating and writing availability report for ${D}...`:`Previewing availability report for ${D}...`).start(),q;try{q=await Yd(D,{write:F.write===!0})}catch(U){W.fail(`Failed to generate availability report for ${D}`),console.error(H.red(d(U))),process.exit(1)}let K="report"in q?q.report:q,Z="report"in q;if(W.succeed(Z?`${D}: availability report written to .nemar/availability-report.json`:`${D}: availability report (dry run, not written)`),F.json){console.log(JSON.stringify(q,null,2));return}if(console.log(),K.version===null)console.log(H.yellow("  No published version manifest to compare against; 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stopping - see errors`);break}if(B=G,(G??0)>0)await m5(1000)}while((G??0)>0);Y.stop()}catch(W){Y.fail("Availability-report sweep failed"),console.error(H.red(d(W))),process.exit(1)}if(F.json)console.log(JSON.stringify({...J,batches:X,remaining:G},null,2));else{if(console.log(),G===null)console.log(H.yellow("Warning: backend returned a null remaining count; the sweep may be incomplete - check server logs."));console.log(H.cyan(`Done in ${X} batch(es): processed=${J.processed} written=${J.written} errors=${J.errors} remaining=${G??"unknown"}`))}if(J.errors>0||G===null)process.exit(1)});_0.addCommand(gk0);var wn=new S0("hed-sweep").description("Backfill HED detection (has_hed / hed_version) for existing datasets (#869)");wn.option("--limit <n>","Datasets per batch (server clamps to [1,30])","15").option("--reset","Clear every probed HED row so a corrected detector can re-sweep").option("--verbose","Print per-batch progress").option("--json","Output raw JSON instead of the human summary").action(async(D)=>{if(!z0())return;if(D.reset){let G=O("Resetting HED sweep state...").start();try{let B=await $d();if(G.succeed(`Cleared ${B.reset} probed HED row(s); 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the sweep may be incomplete - check server logs."));console.log(H.cyan(`Done in ${J} batch(es): processed=${$.processed} hed=${$.withHed} no-hed=${$.withoutHed} unknown=${$.unknown} errors=${$.errors} remaining=${Y??"unknown"}`))}if($.errors>0||Y===null)process.exit(1)});_0.addCommand(wn);async function hk0(D,F,$){let Q=D(),J={processed:0,complete:0,incomplete:0,unknown:0,errors:0},Y=0,X=null,G=null,B=!1;do{let W=await F(Q);if(Y++,J.processed+=W.processed,J.complete+=W.complete,J.incomplete+=W.incomplete,J.unknown+=W.unknown,J.errors+=W.errors.length,X=W.remaining,$?.onBatch?.(W,J,Y),X!=null&&G!=null&&X>=G){B=!0;break}if(G=X,(X??0)>0)await $?.sleepBetweenBatches?.()}while((X??0)>0);return{batches:Y,totals:J,remaining:X,stalled:B}}var Pn=new S0("data-integrity-sweep").description("Audit datasets against their version manifest and backfill data_complete / bytes_present (epic #967 Phase 3, #970)");Pn.option("--limit <n>","Datasets per batch (server clamps to [1,30])","15").option("--older-than <days>","Also re-audit rows checked more than N days ago (periodic re-audit, not just the one-shot drain)").option("--reaudit","Re-verify every already-checked row using an anchored cutoff so the sweep fully converges to 0 (unlike --older-than's moving now()-relative window, which never reaches 0 on its own)").option("--reset","Clear every audited row so a corrected verifier can re-sweep").option("--verbose","Print per-batch progress").option("--json","Output raw JSON instead of the human summary").action(async(D)=>{if(!z0())return;if(D.reset){let B=O("Resetting data-integrity sweep state...").start();try{let W=await Jd();if(B.succeed(`Cleared ${W.reset} audited row(s); eligible datasets are candidates again`),D.json)console.log(JSON.stringify(W,null,2))}catch(W){B.fail("Reset failed"),console.error(H.red(d(W))),process.exit(1)}return}let F=Number.parseInt(D.limit??"15",10)||15,$=D.olderThan?Number.parseInt(D.olderThan,10):void 0,Q=O("Sweeping datasets for data integrity...").start(),J;try{if(J=await hk0(()=>D.reaudit?new Date().toISOString():void 0,async(B)=>{let W=await Qd({limit:F,olderThan:$,before:B});return{processed:W.processed,complete:W.complete,incomplete:W.incomplete,unknown:W.unknown,errors:W.errors,remaining:W.remaining}},{onBatch:(B,W,q)=>{if(D.verbose){Q.stop(),console.log(`  [batch ${q}] processed=${B.processed} complete=${B.complete} incomplete=${B.incomplete} unknown=${B.unknown} errors=${B.errors.length} remaining=${B.remaining??"?"}`);for(let K of B.errors)console.log(`    ${H.red(K.dataset_id)}: ${K.error}`);Q.start("Sweeping datasets for data integrity...")}else Q.text=`Sweeping datasets for data integrity... ${W.processed} processed, ${B.remaining??"?"} remaining`},sleepBetweenBatches:()=>m5(1000)}),J.stalled)Q.warn(`No progress (remaining stuck at ${J.remaining}); stopping - see errors`);else Q.stop()}catch(B){Q.fail("Data-integrity sweep failed"),console.error(H.red(d(B))),process.exit(1)}let{batches:Y,totals:X,remaining:G}=J;if(D.json)console.log(JSON.stringify({...X,batches:Y,remaining:G},null,2));else{if(console.log(),G===null)console.log(H.yellow("Warning: backend returned a null remaining count; the sweep may be incomplete - check server logs."));if(console.log(H.cyan(`Done in ${Y} batch(es): processed=${X.processed} complete=${X.complete} incomplete=${X.incomplete} unknown=${X.unknown} errors=${X.errors} remaining=${G??"unknown"}`)),X.incomplete>0)console.log(H.yellow(`${X.incomplete} dataset(s) verified incomplete -- see 'nemar dataset list --json' (data_complete=0) for details.`))}if(X.errors>0||G===null)process.exit(1)});_0.addCommand(Pn);var AZ=new S0("email-preferences").description("Manage email notification preferences");AZ.command("show").description("Show email notification preferences").option("--user <username>","(owner only) show another user's preferences").action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);let F=O("Fetching email preferences...").start();try{let $=await qd(D.user),Q=$.username?`${$.username}'s`:"Your";F.succeed(`${Q} email notification preferences:`),console.log();let J=[{key:"user_approval",label:"User approval notifications"},{key:"publication_request",label:"Publication request notifications"},{key:"announcements",label:"Announcement emails"}];for(let Y of J){let G=$[Y.key]?H.green("enabled"):H.dim("disabled");console.log(`  ${Y.label.padEnd(40)} ${G}`)}console.log(),console.log(H.dim("  Use 'nemar admin email-preferences update' to change settings."))}catch($){F.fail("Failed to fetch preferences"),console.error(H.red(d($)))}});AZ.command("update").description("Update email notification preferences").option("--user-approval <bool>","Enable/disable user approval notifications").option("--publication-request <bool>","Enable/disable publication request notifications").option("--announcements <bool>","Enable/disable announcement emails").option("--all <bool>","Enable/disable all notifications").option("--user <username>","(owner only) update another user's preferences").action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);function F(J){if(J===void 0)return;let Y=J.toLowerCase();if(Y==="true"||Y==="1"||Y==="on"||Y==="yes")return!0;if(Y==="false"||Y==="0"||Y==="off"||Y==="no")return!1;console.error(H.red(`Invalid boolean value: "${J}". Use true/false, on/off, yes/no.`)),process.exit(1)}let $={};if(D.all!==void 0){let J=F(D.all);$.user_approval=J,$.publication_request=J,$.announcements=J}else{let J=F(D.userApproval),Y=F(D.publicationRequest),X=F(D.announcements);if(J===void 0&&Y===void 0&&X===void 0)console.error(H.red("No preferences specified.")),console.log("  --user-approval <bool>        User approval notifications"),console.log("  --publication-request <bool>   Publication request notifications"),console.log("  --announcements <bool>         Announcement emails"),console.log("  --all <bool>                   All notifications"),process.exit(1);if(J!==void 0)$.user_approval=J;if(Y!==void 0)$.publication_request=Y;if(X!==void 0)$.announcements=X}let Q=O("Updating email preferences...").start();try{let J=await Kd($,D.user),Y=J.username?`${J.username}'s`:"Your";Q.succeed(`${Y} email preferences updated:`),console.log(),console.log(`  User approval:        ${J.user_approval?H.green("enabled"):H.dim("disabled")}`),console.log(`  Publication request:   ${J.publication_request?H.green("enabled"):H.dim("disabled")}`),console.log(`  Announcements:         ${J.announcements?H.green("enabled"):H.dim("disabled")}`)}catch(J){Q.fail("Failed to update preferences"),console.error(H.red(d(J)))}});_0.addCommand(AZ);var mX=new S0("notice").description("Manage system notices displayed to CLI users");mX.command("list").description("List all notices (including expired)").action(async()=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);let D=O("Fetching notices...").start();try{let{notices:F}=await Id();if(F.length===0){D.succeed("No notices found.");return}D.succeed(`${F.length} notice(s):`),console.log();for(let $ of F){let J={critical:H.red.bold,warning:H.yellow,info:H.blue}[$.level]||H.white,Y=$.expires_at&&new Date($.expires_at)<new Date?H.dim(" (expired)"):"";if(console.log(`  ${H.dim(`#${$.id}`)} ${J(`[${$.level.toUpperCase()}]`)} ${H.dim(`scope:${$.scope}`)}${Y}`),console.log(`     ${$.message}`),console.log(`     ${H.dim(`Created: ${$.created_at}`)}`),$.expires_at)console.log(`     ${H.dim(`Expires: ${$.expires_at}`)}`);console.log()}}catch(F){s0(F,D,"Failed to fetch notices")}});mX.command("set").description("Create a new system notice").requiredOption("-m, --message <text>","Notice message text").option("-l, --level <level>","Notice level: info, warning, critical","info").option("-s, --scope <scope>","Target scope: all, admins, members","all").option("-e, --expires <datetime>","Expiry datetime (ISO 8601)").action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(!["info","warning","critical"].includes(D.level))console.error(H.red(`Invalid level: ${D.level}. Use info, warning, or critical.`)),process.exit(1);if(!["all","admins","members"].includes(D.scope))console.error(H.red(`Invalid scope: ${D.scope}. Use all, admins, or members.`)),process.exit(1);let F=O("Creating notice...").start();try{let $=await Sd({message:D.message,level:D.level,scope:D.scope,expires_at:D.expires});if(F.succeed(`Notice created (ID: ${$.id})`),console.log(`  Level: ${$.level}`),console.log(`  Scope: ${$.scope}`),console.log(`  Message: ${$.message}`),$.expires_at)console.log(`  Expires: ${$.expires_at}`)}catch($){s0($,F,"Failed to create notice")}});mX.command("clear <id>").description("Delete a notice by ID").option(P0,I0).option(f0,x0).action(async(D,F)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);let $=Number.parseInt(D,10);if(Number.isNaN($))console.error(H.red("Invalid notice ID")),process.exit(1);if(!await w0(`Delete notice #${$}?`,F,!1))return;let J=O("Deleting notice...").start();try{await kd($),J.succeed(`Notice #${$} deleted`)}catch(Y){s0(Y,J,"Failed to delete notice")}});_0.addCommand(mX);_0.command("notify").description("Send an email to a group or a single user").option("--to <group>","Recipient group: all, admins, members").option("--user <username>","Send to a single user by username").requiredOption("--subject <text>","Email subject line").option("--body <text>","Email body (markdown)").option("--body-file <path>","Read email body from file (markdown)").option("--dry-run","Preview recipients without sending").option(P0,I0).option(f0,x0).action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(D.to&&D.user)console.error(H.red("--to and --user are mutually exclusive. Provide exactly one.")),process.exit(1);if(!D.to&&!D.user)console.error(H.red("Provide either --to <group> or --user <username>.")),process.exit(1);if(D.to&&!["all","admins","members"].includes(D.to))console.error(H.red(`Invalid group: ${D.to}. Use all, admins, or members.`)),process.exit(1);let F;if(D.bodyFile){if(!Ln(D.bodyFile))console.error(H.red(`File not found: ${D.bodyFile}`)),process.exit(1);F=kk0(D.bodyFile,"utf-8")}else if(D.body)F=D.body;else console.error(H.red("Email body required. Use --body or --body-file.")),process.exit(1);let $=D.user?`user:${D.user}`:D.to,Q=D.user?{user:D.user,subject:D.subject,body:F}:{to:D.to,subject:D.subject,body:F};if(D.dryRun){let G=O("Checking recipients...").start();try{let B=await hz({...Q,dry_run:!0});if("dry_run"in B){G.succeed(`Dry run: ${B.recipient_count} recipient(s) for "${B.recipient_group}"`),console.log();for(let W of B.recipients)console.log(`  ${W}`)}}catch(B){s0(B,G,"Failed to check recipients")}return}console.log(H.bold("Email preview:")),console.log(`  To: ${H.cyan($)}`),console.log(`  Subject: ${D.subject}`),console.log(`  Body: ${F.length>100?`${F.substring(0,100)}...`:F}`),console.log();let J=D.user?`Send this email to ${D.user}?`:"Send this broadcast email?";if(!await w0(J,D,!1))return;let X=O(D.user?`Sending to ${D.user}...`:"Sending broadcast...").start();try{let G=await hz(Q);if("broadcast_id"in G)if(G.failure_count>0){X.warn(`Email send: ${G.recipient_count} delivered, ${G.failure_count} failed`);for(let B of G.failed_recipients)console.log(H.red(`  Failed: ${B}`))}else{let B=D.user?`Email sent to ${D.user}`:`Broadcast sent to ${G.recipient_count} recipient(s)`;X.succeed(`${B} (ID: ${G.broadcast_id})`)}}catch(G){s0(G,X,"Failed to send email")}});var uk0=1500;function mk0(D){switch(D.kind){case"ok":return H.green(`ok    ${D.schema_version}`);case"stale":return H.yellow(`stale ${D.schema_version}`);case"missing":return H.red("missing");case"error":return H.red(`error ${D.status||"?"}: ${D.message}`)}}function lk0(D){return D.kind==="stale"||D.kind==="missing"}function pk0(D){let $=D.replace(/[.+^${}()|[\]\\]/g,"\\$&").replace(/\*/g,".*").replace(/\?/g,".");return new RegExp(`^${$}$`)}var In=new S0("summary").description("summary.json coverage across published dataset versions");In.command("check").description("Report which (dataset_id, version) pairs have stale or missing summary.json").option("--fix","Dispatch generate-manifest for every stale/missing version").option("--id <id>","Limit to a single dataset_id (exact match)").option("--match <glob>","Limit to dataset_ids matching a glob pattern: `*` matches any run of chars, `?` matches one char. Examples: `on*`, `nm00010?`, `*99999`. Can be combined with --id (id wins if both passed).").option("--only-stale","Print only rows that are not ok (suppresses ok rows)").option("--json","Emit the full report as JSON instead of a table").option(P0,I0).option(f0,x0).action(async(D)=>{if(!z0())return;let F=O("Building coverage report...").start(),$;try{$=await zd()}catch(Z){s0(Z,F,"Failed to fetch coverage report");return}F.succeed(`Coverage: target=schema ${$.target_schema}, versions=${$.totals.versions}`);let Q=$.versions,J=null;if(D.id){if(Q=Q.filter((Z)=>Z.dataset_id===D.id),J=`dataset_id=${D.id}`,Q.length===0){console.log(H.yellow(`No rows for ${J}`));return}}else if(D.match){let Z=pk0(D.match);if(Q=Q.filter((z)=>Z.test(z.dataset_id)),J=`--match ${D.match}`,Q.length===0){console.log(H.yellow(`No rows match ${J}`));return}console.log(H.dim(`Scoped to ${Q.length} version(s) matching ${D.match}`))}if(D.json){console.log(JSON.stringify(J?{...$,versions:Q,totals:Un(Q)}:$,null,2));return}let Y=D.onlyStale?Q.filter((Z)=>Z.state.kind!=="ok"):Q;if(Y.length===0)console.log(H.green("All versions at target schema \u2014 no drift."));else{let Z=Math.max(...Y.map((E)=>E.dataset_id.length),10),z=Math.max(...Y.map((E)=>E.version.length),7);for(let E of Y)console.log(`  ${E.dataset_id.padEnd(Z)}  ${E.version.padEnd(z)}  ${mk0(E.state)}`)}let X=J?Un(Q):$.totals;if(console.log(),console.log(`  Total: ${X.versions}  ${H.green(`ok=${X.ok}`)}  ${H.yellow(`stale=${X.stale}`)}  ${H.red(`missing=${X.missing}`)}  ${H.red(`error=${X.error}`)}`),!D.fix){if(X.stale+X.missing>0)console.log(H.dim(`
+`));for(let J of Q)try{let Y=await VD(J.xx_id);console.log(`  ${J.xx_id.padEnd(10)} ${J.modality.padEnd(6)} <- ${J.source_id.padEnd(10)} ${H.green(Y.visibility)}  doi=${Y.concept_doi??"none"}`)}catch(Y){if(Y instanceof g&&Y.statusCode===404)console.log(`  ${J.xx_id.padEnd(10)} ${J.modality.padEnd(6)} <- ${J.source_id.padEnd(10)} ${H.dim("not created")}`);else console.log(`  ${J.xx_id.padEnd(10)} ${J.modality.padEnd(6)} <- ${J.source_id.padEnd(10)} ${H.red(`status check failed (${d(Y)})`)}`)}});hX.command("remint-dois").description("Re-mint an exemplar's sandbox concept DOI (idempotent)").argument("<xx-id>","Exemplar dataset id (e.g., xx099900)").action(async(D)=>{if(!z0())return;let F=O(`Re-minting DOIs for ${D}...`).start();try{let $=await sp(D);F.succeed(`Re-minted ${$.concept_doi} (status: ${$.status})`);for(let Q of $.warnings??[])console.log(H.yellow(`  ${Q}`))}catch($){s0($,F,"Failed to re-mint exemplar DOIs",{400:"Not an exemplar dataset",403:"Exemplar DOI re-mint is disabled in production",404:"Dataset not found"}),process.exit(1)}});_0.addCommand(hX);function En(D,F){let $=D.enrichment.status,Q=$==="ok"?H.green("enrich:ok"):$==="failed"?H.red("enrich:failed"):H.dim("enrich:skipped"),J=D.sync.status,Y=J==="ok"?H.green("sync:ok"):J==="failed"?H.red("sync:failed"):H.dim("sync:skipped"),X=D.sync.metadata_columns_written===!0?H.green("cols:written"):D.sync.metadata_columns_error?H.red("cols:failed"):"",G=F?.showRef&&D.enrichment.ref?H.dim(`@${D.enrichment.ref}`):"";if(console.log(`  ${D.dataset_id.padEnd(12)} ${Q}${G}  ${Y}  ${X}`),D.enrichment.error)console.log(H.red(`    enrichment: ${D.enrichment.error}`));if(D.sync.metadata_columns_error)console.log(H.red(`    metadata columns: ${D.sync.metadata_columns_error}`))}var uX=new S0("fleet").description("Governance drift reporting and enforcement (epic #713)");uX.command("drift").description("Report dataset repos that are off the governance spec").option("--prefix <prefix>","Filter datasets by id prefix (e.g. nm, on)").option("--visibility <vis>","Filter by visibility: public or private").option("--limit <n>","Max repos to scan (default 25, max 50)","25").option("--json","Output raw JSON").action(async(D)=>{if(!m0())console.log(H.red("Error: Not authenticated")),process.exit(1);if(D.visibility&&!["public","private"].includes(D.visibility))console.log(H.red("Error: --visibility must be public or private")),process.exit(1);let F=O("Scanning fleet for drift...").start();try{let $=await Bd({prefix:D.prefix,visibility:D.visibility,limit:Number.parseInt(D.limit,10)||25});if(F.stop(),D.json){console.log(JSON.stringify($,null,2));return}console.log(),console.log(H.bold(`Fleet drift (scanned ${$.scanned}):`));let Q=["PUBLIC_UNPROTECTED","RED_REQUIRED_CHECK","CONTEXT_NAME_MISMATCH","MISSING_REQUIRED_WORKFLOW","PRIVATE_WITH_STRAY_READ","DEFAULT_BRANCH_OUTLIER","DEPRECATED_WORKFLOW_PRESENT","COMPLIANT"];for(let J of Q){let Y=$.buckets[J];if(!Y||Y.length===0)continue;let X=J==="COMPLIANT"?H.green:H.yellow;if(console.log(`  ${X(J.padEnd(28))} ${Y.length}`),J!=="COMPLIANT"){let G=Y.slice(0,20).join(", ");console.log(H.dim(`    ${G}${Y.length>20?` ... +${Y.length-20}`:""}`))}}console.log()}catch($){if($ instanceof g)F.fail($.message);else F.fail("Failed to scan fleet"),console.log(H.red(`  ${$.message}`));process.exit(1)}});uX.command("enforce").description("Bring dataset repos to the governance spec (single or --all). Dry-run by default.").argument("[dataset-id]","Dataset to enforce (omit when using --all)").option("--all","Bulk enforce across a filtered set (owner-only)").option("--apply","Actually apply changes (default is a dry run)").option("--prefix <prefix>","Bulk: filter by id prefix").option("--visibility <vis>","Bulk: filter by visibility (public|private)").option("--limit <n>","Bulk: max repos (default 25, max 50)","25").option("--json","Output raw JSON").action(async(D,F)=>{if(!m0())console.log(H.red("Error: Not authenticated")),process.exit(1);if(!D&&!F.all)console.log(H.red("Error: provide a dataset-id or use --all")),process.exit(1);if(D&&F.all)console.log(H.red("Error: provide a dataset-id OR --all, not both")),process.exit(1);let $=!F.apply,Q=$?"[dry-run] ":"",J=O(`${Q}Enforcing spec...`).start();try{if(D){let Y=await P5(D,$);if(J.succeed(`${Q}${D} (${Y.result.visibility})`),F.json){console.log(JSON.stringify(Y,null,2));return}for(let[X,G]of Object.entries(Y.result.steps)){let B=G.status==="ok"?H.green:G.status==="skipped"?H.yellow:H.red;console.log(`  ${B(G.status.padEnd(8))} ${X}${G.detail?H.dim(` (${G.detail})`):""}`)}}else{let Y=await Wd({prefix:F.prefix,visibility:F.visibility,limit:Number.parseInt(F.limit,10)||25,dryRun:$});if(J.succeed(`${Q}processed ${Y.count} repo(s)`),F.json){console.log(JSON.stringify(Y,null,2));return}for(let X of Y.results){if(X.error){console.log(`  ${H.red("error")}  ${X.dataset_id}: ${X.error}`);continue}let G=Object.entries(X.steps??{}).filter(([,W])=>W.status!=="ok").map(([W,q])=>`${W}=${q.status}`),B=G.length?H.yellow("drift"):H.green("ok");console.log(`  ${B}    ${X.dataset_id}${G.length?H.dim(` (${G.join(", ")})`):""}`)}}}catch(Y){if(Y instanceof g)J.fail(Y.message);else J.fail("Enforcement failed"),console.log(H.red(`  ${Y.message}`));process.exit(1)}});var m5=(D)=>new Promise((F)=>setTimeout(F,D));async function bk0(D,F,$){let Q=Date.now()+F,J="no probe completed";while(Date.now()<Q){try{let Y=(await P5(D,!0)).result?.steps?.branch_ruleset;if(Y?.status==="ok")return{status:"green"};if(Y?.detail)J=Y.detail}catch(Y){J=Y instanceof g?Y.message:String(Y)}await m5($)}return{status:"timeout",detail:J}}uX.command("revalidate").description("Re-run BIDS validation on main HEAD for unprotected datasets, then optionally enforce (epic #713)").argument("[dataset-id]","Dataset to revalidate (omit when using --all/--prefix)").option("--all","Revalidate across unprotected public datasets").option("--prefix <prefix>","Filter by id prefix (with --all), e.g. nm000 / on").option("--enforce","After a dataset goes green, run enforce (dry-run unless --apply)").option("--apply","With --enforce, actually apply the ruleset (default is a dry run)").option("--force","Override the live-dataset guard (nm000103-107)").option("--limit <n>","Max repos for --all/--prefix (default 25)","25").option("--json","Output raw JSON").action(async(D,F)=>{if(!m0())console.log(H.red("Error: Not authenticated")),process.exit(1);let $=Boolean(F.all||!D&&F.prefix);if(!D&&!$)console.log(H.red("Error: provide a dataset-id, or --all/--prefix")),process.exit(1);let Q;if(D)Q=[D];else{let q=O("Fetching dataset list...").start();try{let K=[];for(let z=0;;z+=200){let E=await k5({limit:200,offset:z});if(K.push(...E.datasets),E.datasets.length<200||K.length>=E.total_count)break}let Z=Number.parseInt(F.limit,10)||25;Q=hd(K,{prefix:F.prefix}).slice(0,Z),q.succeed(`${Q.length} target(s) (from ${K.length} datasets)`)}catch(K){s0(K,q,"Failed to fetch datasets");return}}let J=Boolean(F.enforce),Y=Boolean(F.apply),X={revalidated:0,green:0,locked:0,stillRed:0,skipped:0,errors:0},G=[],B=[],W=0;for(let q of Q){if(W++,lz.has(q)&&!F.force){console.log(`  [${W}/${Q.length}] ${H.dim(`${q}: skip (live; use --force)`)}`),X.skipped++;continue}try{let K=await Hd(q,F.force);if(G.push(K),K.skipped)console.log(`  [${W}/${Q.length}] ${q}: ${H.dim(`skipped (${K.skipped})`)}`),X.skipped++;else X.revalidated++,B.push(q),console.log(`  [${W}/${Q.length}] ${q}: ${H.cyan(`revalidating (${K.triggered_by})`)}`)}catch(K){X.errors++,console.log(`  [${W}/${Q.length}] ${q}: ${H.red(K instanceof g?K.message:String(K))}`)}if(W<Q.length)await m5(4000)}if(J&&B.length>0)if(D){let q=B[0],K=O(`Waiting for ${q} validation to land...`).start(),Z=await bk0(q,300000,15000);if(Z.status!=="green")K.warn(`${q}: not green within 5m \u2014 last: ${Z.detail} (real errors or still running)`),X.stillRed++;else if(X.green++,!Y)K.succeed(`${q}: green (would lock; pass --apply)`);else{let z=await P5(q,!1);if(z.result?.steps?.branch_ruleset?.status==="ok")K.succeed(`${q}: LOCKED`),X.locked++;else K.warn(`${q}: enforce ${z.result?.steps?.branch_ruleset?.status??"?"}`)}}else{let q=O("Waiting ~90s for validations to drain...").start();await m5(90000),q.text="Enforcing green datasets...";for(let K of B)try{if((await P5(K,!0)).result?.steps?.branch_ruleset?.status!=="ok"){X.stillRed++;continue}if(X.green++,Y){if((await P5(K,!1)).result?.steps?.branch_ruleset?.status==="ok")X.locked++}}catch{X.errors++}q.stop()}if(F.json){console.log(JSON.stringify({tally:X,raw:G},null,2));return}console.log(),console.log(H.cyan(`Done: revalidated=${X.revalidated} green=${X.green} locked=${X.locked} still-red=${X.stillRed} skipped=${X.skipped} errors=${X.errors}`))});_0.addCommand(uX);var Tn=new S0("reindex").description("Refresh dataset metadata: enrichment + first-class D1 columns");Tn.argument("[dataset-id]","Dataset ID to reindex (e.g., nm000103)").option("--all","Reindex every dataset with a GitHub repo").option("--missing-metadata","Reindex only datasets with NULL metadata columns").option("--stale","Reindex only datasets whose metadata is older than --older-than days").option("--older-than <days>","Threshold in days. Default 30 for --stale, 1 (24h) for --missing-metadata recency guard.").option("--skip-enrichment","Skip the LLM enrichment step").option("--skip-sync","Skip the D1 metadata-column refresh step").option("--ref <ref>","Ref to enrich from (single-dataset only; default: main)").option("--dry-run","List matched datasets without firing the reindex (bulk only)").action(async(D,F)=>{if(!z0())return;let $=[F.all,F.missingMetadata,F.stale].filter(Boolean).length;if(D&&$>0)console.error(H.red("Provide either a dataset-id OR a bulk flag (--all/--missing-metadata/--stale), not both")),process.exit(1);if(!D&&$===0)console.error(H.red("Provide a dataset-id or one of: --all, --missing-metadata, --stale")),process.exit(1);if($>1)console.error(H.red("Use only one of --all, --missing-metadata, --stale")),process.exit(1);if(F.skipEnrichment&&F.skipSync)console.error(H.red("--skip-enrichment and --skip-sync cannot both be set")),process.exit(1);if(D){let K=O(`Reindexing ${D}...`).start();try{let Z={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,...F.ref&&{ref:F.ref}},z=await w5(D,Z),E=z.enrichment.status!=="failed"&&z.sync.status!=="failed";if(E)K.succeed(`${D} reindexed`);else K.warn(`${D} reindexed with errors`);if(console.log(),En(z,{showRef:!0}),!E)process.exit(1)}catch(Z){K.fail(`Failed to reindex ${D}`),console.error(H.red(d(Z))),process.exit(1)}return}let Q=F.all?"all":F.missingMetadata?"missing-metadata":"stale",J={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,dry_run:F.dryRun===!0};if(F.olderThan!==void 0){let K=Number.parseInt(F.olderThan,10);if(!Number.isFinite(K)||K<0)console.error(H.red(`Invalid --older-than: "${F.olderThan}"`)),process.exit(1);J.older_than_days=K}else if(Q==="missing-metadata")J.older_than_days=1;else if(Q==="stale")J.older_than_days=30;let Y=F.dryRun?`Listing ${Q} datasets...`:`Reindexing ${Q} datasets...`,X=O(Y).start(),G;try{G=await Dd(Q,J)}catch(K){X.fail("Bulk reindex failed"),console.error(H.red(d(K))),process.exit(1)}if(G.dry_run){if(X.succeed(`${G.total} datasets match filter=${Q} (dry run, no changes)`),G.datasets)for(let K of G.datasets)console.log(H.dim(`  - ${K}`));return}let B=G.results??[],W=B.filter((K)=>K.enrichment.status!=="failed"&&K.sync.status!=="failed").length,q=B.length-W;if(q===0)X.succeed(`${B.length}/${B.length} datasets reindexed in ${(G.elapsed_ms/1000).toFixed(1)}s`);else X.warn(`${W}/${B.length} ok; ${q} failed in ${(G.elapsed_ms/1000).toFixed(1)}s`);console.log();for(let K of B)En(K);if(q>0)process.exit(1)});_0.addCommand(Tn);var gk0=new S0("availability-report").description("Report how much of a dataset's declared data is present in S3, and exactly which files are missing + why (#1000). Dry-run by default. --all backfills every managed dataset (#1001).").argument("[dataset-id]","Dataset ID (e.g., nm000103)").option("--write","Commit the report to .nemar/availability-report.json on main (default: preview only)").option("--all","Backfill every managed dataset instead of a single one (#1001)").option("--missing-only","With --all, sweep only datasets already known incomplete (data_complete=0)").option("--limit <n>","With --all, datasets per batch (server clamps to [1,10])","10").option("--reset","With --all, clear every stamped sweep row so it re-sweeps from scratch").option("--verbose","With --all, print per-batch progress").option("--json","Output raw JSON").action(async(D,F)=>{if(!z0())return;if(!D&&!F.all)console.error(H.red("Provide a dataset-id or --all")),process.exit(1);if(D&&(F.all||F.reset||F.missingOnly))console.error(H.red("--all/--reset/--missing-only cannot be combined with a dataset id")),process.exit(1);if(D){let W=O(F.write?`Generating and writing availability report for ${D}...`:`Previewing availability report for ${D}...`).start(),q;try{q=await Yd(D,{write:F.write===!0})}catch(U){W.fail(`Failed to generate availability report for ${D}`),console.error(H.red(d(U))),process.exit(1)}let K="report"in q?q.report:q,Z="report"in q;if(W.succeed(Z?`${D}: availability report written to .nemar/availability-report.json`:`${D}: availability report (dry run, not written)`),F.json){console.log(JSON.stringify(q,null,2));return}if(console.log(),K.version===null)console.log(H.yellow("  No published version manifest to compare against; completeness unknown."));else console.log(`  Version:   ${K.version}`);console.log(`  Complete:  ${K.complete?H.green("yes"):H.red("no")}`),console.log(`  Files:     ${K.completeness.files_present}/${K.completeness.files_declared} present`);let z=`${GD(K.completeness.bytes_present)}/${GD(K.completeness.bytes_declared)}`,E=K.completeness.pct_bytes!=null?` (${(K.completeness.pct_bytes*100).toFixed(1)}%)`:"";if(console.log(`  Bytes:     ${z}${E}`),K.blocklist_reason)console.log(H.yellow(`  Blocklisted: ${K.blocklist_reason}`));if(K.missing.length>0){console.log(),console.log(H.dim(`  Missing (${K.missing.length}):`));for(let U of K.missing)console.log(H.dim(`    - ${U.path} [${U.reason}]`))}return}if(F.reset){let W=O("Resetting availability-report sweep state...").start();try{let q=await Gd();if(W.succeed(`Cleared ${q.reset} stamped row(s); eligible datasets are candidates again`),F.json)console.log(JSON.stringify(q,null,2))}catch(q){W.fail("Reset failed"),console.error(H.red(d(q))),process.exit(1)}return}let $=Number.parseInt(F.limit??"10",10)||10,Q=F.missingOnly===!0,J={processed:0,written:0,errors:0},Y=O("Sweeping datasets for availability reports...").start(),X=0,G=null,B=null;try{let W;do{if(W=await Xd({limit:$,missingOnly:Q}),X++,J.processed+=W.processed,J.written+=W.written,J.errors+=W.errors.length,G=W.remaining,F.verbose){Y.stop(),console.log(`  [batch ${X}] processed=${W.processed} written=${W.written} errors=${W.errors.length} remaining=${G??"?"}`);for(let q of W.errors)console.log(`    ${H.red(q.dataset_id)}: ${q.error}`);Y.start("Sweeping datasets for availability reports...")}else Y.text=`Sweeping datasets for availability reports... ${J.processed} processed, ${G??"?"} remaining`;if(G!=null&&B!=null&&G>=B){Y.warn(`No progress (remaining stuck at ${G}); stopping - see errors`);break}if(B=G,(G??0)>0)await m5(1000)}while((G??0)>0);Y.stop()}catch(W){Y.fail("Availability-report sweep failed"),console.error(H.red(d(W))),process.exit(1)}if(F.json)console.log(JSON.stringify({...J,batches:X,remaining:G},null,2));else{if(console.log(),G===null)console.log(H.yellow("Warning: backend returned a null remaining count; the sweep may be incomplete - check server logs."));console.log(H.cyan(`Done in ${X} batch(es): processed=${J.processed} written=${J.written} errors=${J.errors} remaining=${G??"unknown"}`))}if(J.errors>0||G===null)process.exit(1)});_0.addCommand(gk0);var wn=new S0("hed-sweep").description("Backfill HED detection (has_hed / hed_version) for existing datasets (#869)");wn.option("--limit <n>","Datasets per batch (server clamps to [1,30])","15").option("--reset","Clear every probed HED row so a corrected detector can re-sweep").option("--verbose","Print per-batch progress").option("--json","Output raw JSON instead of the human summary").action(async(D)=>{if(!z0())return;if(D.reset){let G=O("Resetting HED sweep state...").start();try{let B=await $d();if(G.succeed(`Cleared ${B.reset} probed HED row(s); eligible datasets are candidates again`),D.json)console.log(JSON.stringify(B,null,2))}catch(B){G.fail("Reset failed"),console.error(H.red(d(B))),process.exit(1)}return}let F=Number.parseInt(D.limit??"15",10)||15,$={processed:0,withHed:0,withoutHed:0,unknown:0,errors:0},Q=O("Sweeping datasets for HED...").start(),J=0,Y=null,X=null;try{let G;do{if(G=await Fd({limit:F}),J++,$.processed+=G.processed,$.withHed+=G.withHed,$.withoutHed+=G.withoutHed,$.unknown+=G.unknown,$.errors+=G.errors.length,Y=G.remaining,D.verbose){Q.stop(),console.log(`  [batch ${J}] processed=${G.processed} hed=${G.withHed} no-hed=${G.withoutHed} unknown=${G.unknown} errors=${G.errors.length} remaining=${Y??"?"}`);for(let B of G.errors)console.log(`    ${H.red(B.dataset_id)}: ${B.error}`);Q.start("Sweeping datasets for HED...")}else Q.text=`Sweeping datasets for HED... ${$.processed} processed, ${Y??"?"} remaining`;if(Y!=null&&X!=null&&Y>=X){Q.warn(`No progress (remaining stuck at ${Y}); stopping - see errors`);break}if(X=Y,(Y??0)>0)await m5(1000)}while((Y??0)>0);Q.stop()}catch(G){Q.fail("HED sweep failed"),console.error(H.red(d(G))),process.exit(1)}if(D.json)console.log(JSON.stringify({...$,batches:J,remaining:Y},null,2));else{if(console.log(),Y===null)console.log(H.yellow("Warning: backend returned a null remaining count; the sweep may be incomplete - check server logs."));console.log(H.cyan(`Done in ${J} batch(es): processed=${$.processed} hed=${$.withHed} no-hed=${$.withoutHed} unknown=${$.unknown} errors=${$.errors} remaining=${Y??"unknown"}`))}if($.errors>0||Y===null)process.exit(1)});_0.addCommand(wn);async function hk0(D,F,$){let Q=D(),J={processed:0,complete:0,incomplete:0,unknown:0,errors:0},Y=0,X=null,G=null,B=!1;do{let W=await F(Q);if(Y++,J.processed+=W.processed,J.complete+=W.complete,J.incomplete+=W.incomplete,J.unknown+=W.unknown,J.errors+=W.errors.length,X=W.remaining,$?.onBatch?.(W,J,Y),X!=null&&G!=null&&X>=G){B=!0;break}if(G=X,(X??0)>0)await $?.sleepBetweenBatches?.()}while((X??0)>0);return{batches:Y,totals:J,remaining:X,stalled:B}}var Pn=new S0("data-integrity-sweep").description("Audit datasets against their version manifest and backfill data_complete / bytes_present (epic #967 Phase 3, #970)");Pn.option("--limit <n>","Datasets per batch (server clamps to [1,30])","15").option("--older-than <days>","Also re-audit rows checked more than N days ago (periodic re-audit, not just the one-shot drain)").option("--reaudit","Re-verify every already-checked row using an anchored cutoff so the sweep fully converges to 0 (unlike --older-than's moving now()-relative window, which never reaches 0 on its own)").option("--reset","Clear every audited row so a corrected verifier can re-sweep").option("--verbose","Print per-batch progress").option("--json","Output raw JSON instead of the human summary").action(async(D)=>{if(!z0())return;if(D.reset){let B=O("Resetting data-integrity sweep state...").start();try{let W=await Jd();if(B.succeed(`Cleared ${W.reset} audited row(s); eligible datasets are candidates again`),D.json)console.log(JSON.stringify(W,null,2))}catch(W){B.fail("Reset failed"),console.error(H.red(d(W))),process.exit(1)}return}let F=Number.parseInt(D.limit??"15",10)||15,$=D.olderThan?Number.parseInt(D.olderThan,10):void 0,Q=O("Sweeping datasets for data integrity...").start(),J;try{if(J=await hk0(()=>D.reaudit?new Date().toISOString():void 0,async(B)=>{let W=await Qd({limit:F,olderThan:$,before:B});return{processed:W.processed,complete:W.complete,incomplete:W.incomplete,unknown:W.unknown,errors:W.errors,remaining:W.remaining}},{onBatch:(B,W,q)=>{if(D.verbose){Q.stop(),console.log(`  [batch ${q}] processed=${B.processed} complete=${B.complete} incomplete=${B.incomplete} unknown=${B.unknown} errors=${B.errors.length} remaining=${B.remaining??"?"}`);for(let K of B.errors)console.log(`    ${H.red(K.dataset_id)}: ${K.error}`);Q.start("Sweeping datasets for data integrity...")}else Q.text=`Sweeping datasets for data integrity... ${W.processed} processed, ${B.remaining??"?"} remaining`},sleepBetweenBatches:()=>m5(1000)}),J.stalled)Q.warn(`No progress (remaining stuck at ${J.remaining}); stopping - see errors`);else Q.stop()}catch(B){Q.fail("Data-integrity sweep failed"),console.error(H.red(d(B))),process.exit(1)}let{batches:Y,totals:X,remaining:G}=J;if(D.json)console.log(JSON.stringify({...X,batches:Y,remaining:G},null,2));else{if(console.log(),G===null)console.log(H.yellow("Warning: backend returned a null remaining count; the sweep may be incomplete - check server logs."));if(console.log(H.cyan(`Done in ${Y} batch(es): processed=${X.processed} complete=${X.complete} incomplete=${X.incomplete} unknown=${X.unknown} errors=${X.errors} remaining=${G??"unknown"}`)),X.incomplete>0)console.log(H.yellow(`${X.incomplete} dataset(s) verified incomplete -- see 'nemar dataset list --json' (data_complete=0) for details.`))}if(X.errors>0||G===null)process.exit(1)});_0.addCommand(Pn);var AZ=new S0("email-preferences").description("Manage email notification preferences");AZ.command("show").description("Show email notification preferences").option("--user <username>","(owner only) show another user's preferences").action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);let F=O("Fetching email preferences...").start();try{let $=await qd(D.user),Q=$.username?`${$.username}'s`:"Your";F.succeed(`${Q} email notification preferences:`),console.log();let J=[{key:"user_approval",label:"User approval notifications"},{key:"publication_request",label:"Publication request notifications"},{key:"announcements",label:"Announcement emails"}];for(let Y of J){let G=$[Y.key]?H.green("enabled"):H.dim("disabled");console.log(`  ${Y.label.padEnd(40)} ${G}`)}console.log(),console.log(H.dim("  Use 'nemar admin email-preferences update' to change settings."))}catch($){F.fail("Failed to fetch preferences"),console.error(H.red(d($)))}});AZ.command("update").description("Update email notification preferences").option("--user-approval <bool>","Enable/disable user approval notifications").option("--publication-request <bool>","Enable/disable publication request notifications").option("--announcements <bool>","Enable/disable announcement emails").option("--all <bool>","Enable/disable all notifications").option("--user <username>","(owner only) update another user's preferences").action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);function F(J){if(J===void 0)return;let Y=J.toLowerCase();if(Y==="true"||Y==="1"||Y==="on"||Y==="yes")return!0;if(Y==="false"||Y==="0"||Y==="off"||Y==="no")return!1;console.error(H.red(`Invalid boolean value: "${J}". Use true/false, on/off, yes/no.`)),process.exit(1)}let $={};if(D.all!==void 0){let J=F(D.all);$.user_approval=J,$.publication_request=J,$.announcements=J}else{let J=F(D.userApproval),Y=F(D.publicationRequest),X=F(D.announcements);if(J===void 0&&Y===void 0&&X===void 0)console.error(H.red("No preferences specified.")),console.log("  --user-approval <bool>        User approval notifications"),console.log("  --publication-request <bool>   Publication request notifications"),console.log("  --announcements <bool>         Announcement emails"),console.log("  --all <bool>                   All notifications"),process.exit(1);if(J!==void 0)$.user_approval=J;if(Y!==void 0)$.publication_request=Y;if(X!==void 0)$.announcements=X}let Q=O("Updating email preferences...").start();try{let J=await Kd($,D.user),Y=J.username?`${J.username}'s`:"Your";Q.succeed(`${Y} email preferences updated:`),console.log(),console.log(`  User approval:        ${J.user_approval?H.green("enabled"):H.dim("disabled")}`),console.log(`  Publication request:   ${J.publication_request?H.green("enabled"):H.dim("disabled")}`),console.log(`  Announcements:         ${J.announcements?H.green("enabled"):H.dim("disabled")}`)}catch(J){Q.fail("Failed to update preferences"),console.error(H.red(d(J)))}});_0.addCommand(AZ);var mX=new S0("notice").description("Manage system notices displayed to CLI users");mX.command("list").description("List all notices (including expired)").action(async()=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);let D=O("Fetching notices...").start();try{let{notices:F}=await Id();if(F.length===0){D.succeed("No notices found.");return}D.succeed(`${F.length} notice(s):`),console.log();for(let $ of F){let J={critical:H.red.bold,warning:H.yellow,info:H.blue}[$.level]||H.white,Y=$.expires_at&&new Date($.expires_at)<new Date?H.dim(" (expired)"):"";if(console.log(`  ${H.dim(`#${$.id}`)} ${J(`[${$.level.toUpperCase()}]`)} ${H.dim(`scope:${$.scope}`)}${Y}`),console.log(`     ${$.message}`),console.log(`     ${H.dim(`Created: ${$.created_at}`)}`),$.expires_at)console.log(`     ${H.dim(`Expires: ${$.expires_at}`)}`);console.log()}}catch(F){s0(F,D,"Failed to fetch notices")}});mX.command("set").description("Create a new system notice").requiredOption("-m, --message <text>","Notice message text").option("-l, --level <level>","Notice level: info, warning, critical","info").option("-s, --scope <scope>","Target scope: all, admins, members","all").option("-e, --expires <datetime>","Expiry datetime (ISO 8601)").action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(!["info","warning","critical"].includes(D.level))console.error(H.red(`Invalid level: ${D.level}. Use info, warning, or critical.`)),process.exit(1);if(!["all","admins","members"].includes(D.scope))console.error(H.red(`Invalid scope: ${D.scope}. Use all, admins, or members.`)),process.exit(1);let F=O("Creating notice...").start();try{let $=await Sd({message:D.message,level:D.level,scope:D.scope,expires_at:D.expires});if(F.succeed(`Notice created (ID: ${$.id})`),console.log(`  Level: ${$.level}`),console.log(`  Scope: ${$.scope}`),console.log(`  Message: ${$.message}`),$.expires_at)console.log(`  Expires: ${$.expires_at}`)}catch($){s0($,F,"Failed to create notice")}});mX.command("clear <id>").description("Delete a notice by ID").option(P0,I0).option(f0,x0).action(async(D,F)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);let $=Number.parseInt(D,10);if(Number.isNaN($))console.error(H.red("Invalid notice ID")),process.exit(1);if(!await w0(`Delete notice #${$}?`,F,!1))return;let J=O("Deleting notice...").start();try{await kd($),J.succeed(`Notice #${$} deleted`)}catch(Y){s0(Y,J,"Failed to delete notice")}});_0.addCommand(mX);_0.command("notify").description("Send an email to a group or a single user").option("--to <group>","Recipient group: all, admins, members").option("--user <username>","Send to a single user by username").requiredOption("--subject <text>","Email subject line").option("--body <text>","Email body (markdown)").option("--body-file <path>","Read email body from file (markdown)").option("--dry-run","Preview recipients without sending").option(P0,I0).option(f0,x0).action(async(D)=>{if(!m0())console.error(H.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(D.to&&D.user)console.error(H.red("--to and --user are mutually exclusive. Provide exactly one.")),process.exit(1);if(!D.to&&!D.user)console.error(H.red("Provide either --to <group> or --user <username>.")),process.exit(1);if(D.to&&!["all","admins","members"].includes(D.to))console.error(H.red(`Invalid group: ${D.to}. Use all, admins, or members.`)),process.exit(1);let F;if(D.bodyFile){if(!Ln(D.bodyFile))console.error(H.red(`File not found: ${D.bodyFile}`)),process.exit(1);F=kk0(D.bodyFile,"utf-8")}else if(D.body)F=D.body;else console.error(H.red("Email body required. Use --body or --body-file.")),process.exit(1);let $=D.user?`user:${D.user}`:D.to,Q=D.user?{user:D.user,subject:D.subject,body:F}:{to:D.to,subject:D.subject,body:F};if(D.dryRun){let G=O("Checking recipients...").start();try{let B=await hz({...Q,dry_run:!0});if("dry_run"in B){G.succeed(`Dry run: ${B.recipient_count} recipient(s) for "${B.recipient_group}"`),console.log();for(let W of B.recipients)console.log(`  ${W}`)}}catch(B){s0(B,G,"Failed to check recipients")}return}console.log(H.bold("Email preview:")),console.log(`  To: ${H.cyan($)}`),console.log(`  Subject: ${D.subject}`),console.log(`  Body: ${F.length>100?`${F.substring(0,100)}...`:F}`),console.log();let J=D.user?`Send this email to ${D.user}?`:"Send this broadcast email?";if(!await w0(J,D,!1))return;let X=O(D.user?`Sending to ${D.user}...`:"Sending broadcast...").start();try{let G=await hz(Q);if("broadcast_id"in G)if(G.failure_count>0){X.warn(`Email send: ${G.recipient_count} delivered, ${G.failure_count} failed`);for(let B of G.failed_recipients)console.log(H.red(`  Failed: ${B}`))}else{let B=D.user?`Email sent to ${D.user}`:`Broadcast sent to ${G.recipient_count} recipient(s)`;X.succeed(`${B} (ID: ${G.broadcast_id})`)}}catch(G){s0(G,X,"Failed to send email")}});var uk0=1500;function mk0(D){switch(D.kind){case"ok":return H.green(`ok    ${D.schema_version}`);case"stale":return H.yellow(`stale ${D.schema_version}`);case"missing":return H.red("missing");case"error":return H.red(`error ${D.status||"?"}: ${D.message}`)}}function lk0(D){return D.kind==="stale"||D.kind==="missing"}function pk0(D){let $=D.replace(/[.+^${}()|[\]\\]/g,"\\$&").replace(/\*/g,".*").replace(/\?/g,".");return new RegExp(`^${$}$`)}var In=new S0("summary").description("summary.json coverage across published dataset versions");In.command("check").description("Report which (dataset_id, version) pairs have stale or missing summary.json").option("--fix","Dispatch generate-manifest for every stale/missing version").option("--id <id>","Limit to a single dataset_id (exact match)").option("--match <glob>","Limit to dataset_ids matching a glob pattern: `*` matches any run of chars, `?` matches one char. Examples: `on*`, `nm00010?`, `*99999`. Can be combined with --id (id wins if both passed).").option("--only-stale","Print only rows that are not ok (suppresses ok rows)").option("--json","Emit the full report as JSON instead of a table").option(P0,I0).option(f0,x0).action(async(D)=>{if(!z0())return;let F=O("Building coverage report...").start(),$;try{$=await zd()}catch(Z){s0(Z,F,"Failed to fetch coverage report");return}F.succeed(`Coverage: target=schema ${$.target_schema}, versions=${$.totals.versions}`);let Q=$.versions,J=null;if(D.id){if(Q=Q.filter((Z)=>Z.dataset_id===D.id),J=`dataset_id=${D.id}`,Q.length===0){console.log(H.yellow(`No rows for ${J}`));return}}else if(D.match){let Z=pk0(D.match);if(Q=Q.filter((z)=>Z.test(z.dataset_id)),J=`--match ${D.match}`,Q.length===0){console.log(H.yellow(`No rows match ${J}`));return}console.log(H.dim(`Scoped to ${Q.length} version(s) matching ${D.match}`))}if(D.json){console.log(JSON.stringify(J?{...$,versions:Q,totals:Un(Q)}:$,null,2));return}let Y=D.onlyStale?Q.filter((Z)=>Z.state.kind!=="ok"):Q;if(Y.length===0)console.log(H.green("All versions at target schema \u2014 no drift."));else{let Z=Math.max(...Y.map((E)=>E.dataset_id.length),10),z=Math.max(...Y.map((E)=>E.version.length),7);for(let E of Y)console.log(`  ${E.dataset_id.padEnd(Z)}  ${E.version.padEnd(z)}  ${mk0(E.state)}`)}let X=J?Un(Q):$.totals;if(console.log(),console.log(`  Total: ${X.versions}  ${H.green(`ok=${X.ok}`)}  ${H.yellow(`stale=${X.stale}`)}  ${H.red(`missing=${X.missing}`)}  ${H.red(`error=${X.error}`)}`),!D.fix){if(X.stale+X.missing>0)console.log(H.dim(`
 Run with --fix to dispatch generate-manifest for the ${X.stale+X.missing} drifted version(s).`));return}let G=Q.filter((Z)=>lk0(Z.state));if(G.length===0){console.log(H.green(`
 Nothing to dispatch.`));return}let B=J?` (scoped to ${J})`:"",W=await w0(`Dispatch generate-manifest for ${G.length} version(s)${B}? Each dispatch queues a runner job on nemarDatasets/.github.`,D);if(W!=="confirmed"){console.log(H.dim(W==="declined"?"Skipped":"Cancelled"));return}let q=0,K=0;console.log();for(let[Z,z]of G.entries()){let E=`${z.dataset_id}@${z.version}`,U=O(`[${Z+1}/${G.length}] dispatching ${E}...`).start();try{await Zd(z.dataset_id,z.version),U.succeed(`[${Z+1}/${G.length}] dispatched ${E}`),q++}catch(L){U.fail(`[${Z+1}/${G.length}] ${E}: ${d(L)}`),K++}if(Z<G.length-1)await new Promise((L)=>setTimeout(L,uk0))}if(console.log(),console.log(K===0?H.green(`All ${q} dispatches succeeded.`):H.yellow(`${q} succeeded, ${K} failed.`)),console.log(H.dim("Workflow runs will appear on https://github.com/nemarDatasets/.github/actions. Re-run `nemar admin summary check` once they complete to verify drift cleared.")),K>0)process.exitCode=1});function Un(D){return{versions:D.length,ok:D.filter((F)=>F.state.kind==="ok").length,stale:D.filter((F)=>F.state.kind==="stale").length,missing:D.filter((F)=>F.state.kind==="missing").length,error:D.filter((F)=>F.state.kind==="error").length}}_0.addCommand(In);e0();Z6();F8();X$();var dk0=/^v?\d+\.\d+\.\d+(?:-(?:rc|alpha|beta)\d*)?$/,ck0=/^v\d+\.\d+\.\d+(?:-(?:rc|alpha|beta)\d*)?$/;function nk0(D){return D.startsWith("v")?D:`v${D}`}var Sn=I.string().regex(dk0,"must be a semver version, optionally v-prefixed").transform(nk0),fr0=I.string().regex(ck0,"must be the canonical v-prefixed tag (vX.Y.Z)");X$();var ik0=I.object({id:I.number().int(),username:I.string().nullable(),email:I.string(),github_username:I.string().nullable(),role:I.string(),orcid:I.string().nullable().optional(),created_at:I.string().optional(),approved_at:I.string().nullable().optional(),dataset_count:I.number().int().optional(),sandbox_completed:I.boolean().optional(),sandbox_completed_at:I.string().nullable().optional(),sandbox_dataset_id:I.string().nullable().optional()}).passthrough(),ak0=I.object({prefix:I.string(),created_at:I.string(),last_used_at:I.string().nullable()}).passthrough().nullable(),kn=I.object({user:ik0,token:ak0.optional()}).passthrough();X$();var ok0="0.3.0",sk0=I.enum(["openneuro","nemar","gin","other"]),NZ=I.union([I.literal(0),I.literal(1)]).nullable(),vn=I.object({dataset_id:I.string(),id:I.string().optional(),name:I.string(),description:I.string().nullable().optional(),status:I.string(),visibility:I.string(),concept_doi:I.string().nullable().optional(),doi:I.string().nullable().optional(),created_at:I.string(),updated_at:I.string().optional(),owner_username:I.string().nullable().optional(),source:I.string().nullable().optional(),modalities:I.string().optional(),participants:I.number().int().nonnegative(),tasks:I.string().optional(),authors:I.string().optional(),license:I.string().optional(),file_size:I.number().nonnegative(),file_size_formatted:I.string().optional(),total_files:I.number().nonnegative().nullable().optional(),num_citations:I.number().int().nonnegative().optional(),n_channels:I.number().int().nullable().optional(),electrode_system:I.string().nullable().optional(),has_hed:NZ.optional(),hed_version:I.string().nullable().optional(),data_complete:NZ.optional(),bytes_present:I.number().nonnegative().nullable().optional(),latest_version:Sn.nullable().optional()}).passthrough(),rk0=vn.extend({file_size:I.number().nonnegative().nullable(),modalities:I.string().nullable().optional(),tasks:I.string().nullable().optional(),authors:I.string().nullable().optional(),license:I.string().nullable().optional(),owner_github:I.string().nullable().optional()}).passthrough(),tk0=I.object({id:I.string(),name:I.string(),modalities:I.string().nullable().optional(),participants:I.number().int().nullable().optional(),doi:I.string().nullable().optional(),tasks:I.string().nullable().optional(),authors:I.string().nullable().optional(),has_hed:NZ.optional(),score:I.number().optional(),snippet:I.string().optional()}).passthrough(),lr0=I.object({datasets:I.array(vn),count:I.number().int().nonnegative(),total_count:I.number().int().nonnegative().optional(),limit:I.number().int().optional(),offset:I.number().int().optional()}).passthrough(),pr0=I.object({results:I.array(tk0),count:I.number().int().nonnegative(),method:I.string().optional(),min_score:I.number().optional()}).passthrough(),dr0=I.object({dataset:rk0}).passthrough(),cr0=I.object({schema_version:I.literal(ok0),doc_type:I.literal("dataset"),dataset_id:I.string().regex(/^[a-z]{2}\d+$/,"neuroschema dataset_id pattern"),name:I.string(),source:sk0,recording_modality:I.array(I.string()).min(1),description:I.string().nullable().optional(),bids_version:I.string().nullable().optional(),license:I.string().nullable().optional()}).passthrough();S4();async function yn(D){return y(`/auth/check-username?username=${encodeURIComponent(D)}`)}async function xn(D){return y(`/auth/check-github?username=${encodeURIComponent(D)}`)}async function _n(D){return y("/auth/signup",{method:"POST",body:JSON.stringify(D)})}async function CZ(D){return y("/auth/login",{method:"POST",body:JSON.stringify({api_key:D})})}async function fn(D){return y("/auth/resend-verification",{method:"POST",body:JSON.stringify({email:D})})}async function bn(D,F){return y("/auth/retrieve-key",{method:"POST",body:JSON.stringify({email:D,password:F})})}async function gn(D){return y("/auth/request-key-regeneration",{method:"POST",body:JSON.stringify({email:D})})}async function lX(){return(await y("/users/me",{},!0,kn)).user}async function hn(D){return y("/sandbox/complete",{method:"POST",body:JSON.stringify({dataset_id:D})},!0)}async function un(){return y("/sandbox/reset",{method:"POST"},!0)}async function mn(){return y("/sandbox/status",{},!0)}Z1();I4();V1();var ln={git:{name:"git",purpose:"version control for dataset metadata",cmd:["git","--version"],required:!0,installInstructions:{macos:"brew install git  (or install Xcode Command Line Tools)",linux:"sudo apt-get install git  OR  sudo dnf install git",windows:"winget install Git.Git  (or https://git-scm.com/download/win)"}},"git-annex":{name:"git-annex",purpose:"large-file data transfer (upload/download)",cmd:["git-annex","version"],required:!0,installInstructions:{macos:"brew install git-annex",linux:"sudo apt-get install git-annex  OR  sudo dnf install git-annex",windows:"Download the installer from https://git-annex.branchable.com/install/Windows/"}},gh:{name:"GitHub CLI (gh)",purpose:"GitHub authentication + repository operations",cmd:["gh","--version"],required:!0,installInstructions:{macos:"brew install gh",linux:"See https://cli.github.com/manual/installation",windows:"winget install GitHub.cli  (or: scoop install gh)"}},aws:{name:"AWS CLI",purpose:"S3 data upload/download",cmd:["aws","--version"],required:!0,installInstructions:{macos:"brew install awscli",linux:"pip install awscli  OR  sudo snap install aws-cli --classic",windows:"winget install Amazon.AWSCLI  (or the MSI from https://aws.amazon.com/cli/)"}},deno:{name:"Deno",purpose:"BIDS validation",cmd:["deno","--version"],required:!0,installInstructions:{macos:"brew install deno  (or: curl -fsSL https://deno.land/install.sh | sh)",linux:"curl -fsSL https://deno.land/install.sh | sh",windows:"winget install DenoLand.Deno  (or: irm https://deno.land/install.ps1 | iex)"}}},ek0={upload:["git-annex","gh","aws","deno"],download:["gh"],clone:["git","gh"],push:["git-annex","gh"],publish:["gh","aws"],update:["git","gh"],release:["git","gh"]};function Dv0(){if(process.platform==="darwin")return"macos";if(process.platform==="win32")return"windows";return"linux"}function pn(D,F=Dv0()){return D.installInstructions[F]}function Fv0(D){let F=D.match(/(\d+\.\d+(?:\.\d+)?)/);return F?F[1]:void 0}async function dn(D){try{let{exitCode:F,stdout:$}=await T(D.cmd);if(F!==0)return{available:!1};return{available:!0,version:Fv0($)}}catch(F){let $=F instanceof Error?F.message:String(F);if(!$.includes("ENOENT")&&!$.includes("not found"))console.error(`  Warning: ${D.name} check failed unexpectedly: ${$}`);return{available:!1}}}async function OZ(){let D=Object.entries(ln);return Promise.all(D.map(async([F,$])=>{let{available:Q,version:J}=await dn($);return{key:F,name:$.name,purpose:$.purpose,required:$.required,available:Q,version:J,installInstruction:pn($)}}))}async function cn(){let F=(await OZ()).filter(($)=>$.required&&!$.available);if(F.length===0)return[];console.warn(`
 Heads up: some tools NEMAR needs for uploading/validating aren't installed yet:`);for(let $ of F)console.warn(`  - ${$.name} (${$.purpose})`),console.warn(`      Install: ${$.installInstruction}`);return console.warn("Run `nemar doctor` anytime to re-check. You can finish signup without them.\n"),F}async function v3(D){let $=ek0[D].map((X)=>ln[X]).filter(Boolean),J=(await Promise.all($.map(async(X)=>({check:X,available:(await dn(X)).available})))).filter((X)=>!X.available&&X.check.required).map((X)=>({tool:X.check.name,installInstruction:pn(X.check)}));if(J.length===0)return;let Y=[`
@@ -740,7 +740,7 @@ Description:
 Examples:
   $ nemar dataset release nm000104 --type patch
   $ nemar dataset release nm000104 --version 2.0.0
-  $ nemar dataset release nm000104                   # interactive prompt`).action(async(D,F)=>{rD(),await v3("release");let $=O("Fetching dataset info...").start(),Q;try{Q=await VD(D),$.succeed(`Dataset: ${Q.name||D}`)}catch(C){if(C instanceof g)$.fail(C.message);else $.fail("Failed to fetch dataset");process.exit(1)}if(!Q.github_repo)console.log(H.red("Error: Dataset has no GitHub repository")),process.exit(1);let J;try{let C=await Nd(D);if(J=C.current_version,console.log(`  Current version: ${H.cyan(J)}`),C.versions.length>0){console.log(`  Version DOIs: ${C.versions.length}`);for(let P of C.versions.slice(0,3))console.log(`    ${P.version} - ${H.dim(P.doi)}`);if(C.versions.length>3)console.log(H.dim(`    ... and ${C.versions.length-3} more`))}}catch(C){let P=C instanceof g?`${C.statusCode}: ${C.message}`:String(C);console.log(H.red(`Error: Could not fetch version history (${P})`)),console.log("  Cannot determine current version. Ensure the backend is reachable."),process.exit(1)}let Y;if(F.version){if(!fZ(F.version))console.log(H.red(`Error: Invalid version: ${F.version}`)),console.log("  Expected format: X.Y.Z (e.g., 2.0.0)"),process.exit(1);Y=F.version.replace(/^v/,"")}else if(F.type){let C=F.type;if(!["patch","minor","major"].includes(C))console.log(H.red(`Error: Invalid bump type: ${F.type}`)),console.log("  Expected: patch, minor, or major"),process.exit(1);Y=_3(J,C)}else{if(!p5(J))console.log(H.red(`Error: Cannot parse current version: ${J}`)),process.exit(1);let P=[{name:`patch  ${J} -> ${_3(J,"patch")}`,value:"patch"},{name:`minor  ${J} -> ${_3(J,"minor")}`,value:"minor"},{name:`major  ${J} -> ${_3(J,"major")}`,value:"major"},{name:"custom version",value:"custom"}],{bumpType:w}=await e.prompt([{type:"list",name:"bumpType",message:"Select version bump type:",choices:P}]);if(w==="custom"){let{customVersion:b}=await e.prompt([{type:"input",name:"customVersion",message:"Enter version (X.Y.Z):",validate:(k)=>fZ(k)||"Invalid format. Use X.Y.Z (e.g., 2.0.0)"}]);Y=b.replace(/^v/,"")}else Y=_3(J,w)}if(console.log(),console.log(`  ${H.bold("Version bump:")} ${J} -> ${H.green(Y)}`),await w0(`Create release PR for ${D} v${Y}?`,{yes:F.yes})!=="confirmed"){console.log("Cancelled.");return}let G,B=!0;if(F.dir){if(!w1(F.dir))console.log(H.red(`Error: Directory not found: ${F.dir}`)),process.exit(1);G=k6(F.dir),B=!1}else G=Ky0(d5(zy0(),`nemar-release-${D}-`));if(B){let C=`https://github.com/${Q.github_repo}.git`,P=O("Cloning dataset...").start(),w=await E1(C,G);if(!w.success)P.fail(`Clone failed: ${w.error}`),process.exit(1);P.succeed("Cloned dataset")}let W=`release/v${Y}`,q=O("Creating release branch...").start(),K=kD({cmd:["git","checkout","-b",W],cwd:G,stdout:"pipe",stderr:"pipe"});if(await K.exited!==0){let C=await new Response(K.stderr).text();q.fail(`Failed to create branch: ${C.trim()}`),process.exit(1)}q.succeed(`Created branch: ${W}`);let Z=d5(G,"dataset_description.json");if(!w1(Z))console.log(H.red("Error: dataset_description.json not found in repo")),process.exit(1);let z;try{z=JSON.parse(rX(Z,"utf-8"))}catch(C){if(C instanceof SyntaxError)console.log(H.red("Error: dataset_description.json contains invalid JSON"));else console.log(H.red(`Error: Could not read dataset_description.json: ${C}`));process.exit(1)}z.Version=Y,Aa(Z,`${JSON.stringify(z,null,2)}
+  $ nemar dataset release nm000104                   # interactive prompt`).action(async(D,F)=>{rD(),await v3("release");let $=O("Fetching dataset info...").start(),Q;try{Q=await VD(D),$.succeed(`Dataset: ${Q.name||D}`)}catch(C){if(C instanceof g)$.fail(C.message);else $.fail("Failed to fetch dataset");process.exit(1)}if(!Q.github_repo)console.log(H.red("Error: Dataset has no GitHub repository")),process.exit(1);let J;try{let C=await Nd(D);if(J=C.current_version.replace(/^v/,""),console.log(`  Current version: ${H.cyan(J)}`),C.versions.length>0){console.log(`  Version DOIs: ${C.versions.length}`);for(let P of C.versions.slice(0,3))console.log(`    ${P.version} - ${H.dim(P.doi)}`);if(C.versions.length>3)console.log(H.dim(`    ... and ${C.versions.length-3} more`))}}catch(C){let P=C instanceof g?`${C.statusCode}: ${C.message}`:String(C);console.log(H.red(`Error: Could not fetch version history (${P})`)),console.log("  Cannot determine current version. Ensure the backend is reachable."),process.exit(1)}let Y;if(F.version){if(!fZ(F.version))console.log(H.red(`Error: Invalid version: ${F.version}`)),console.log("  Expected format: X.Y.Z (e.g., 2.0.0)"),process.exit(1);Y=F.version.replace(/^v/,"")}else if(F.type){let C=F.type;if(!["patch","minor","major"].includes(C))console.log(H.red(`Error: Invalid bump type: ${F.type}`)),console.log("  Expected: patch, minor, or major"),process.exit(1);Y=_3(J,C)}else{if(!p5(J))console.log(H.red(`Error: Cannot parse current version: ${J}`)),process.exit(1);let P=[{name:`patch  ${J} -> ${_3(J,"patch")}`,value:"patch"},{name:`minor  ${J} -> ${_3(J,"minor")}`,value:"minor"},{name:`major  ${J} -> ${_3(J,"major")}`,value:"major"},{name:"custom version",value:"custom"}],{bumpType:w}=await e.prompt([{type:"list",name:"bumpType",message:"Select version bump type:",choices:P}]);if(w==="custom"){let{customVersion:b}=await e.prompt([{type:"input",name:"customVersion",message:"Enter version (X.Y.Z):",validate:(k)=>fZ(k)||"Invalid format. Use X.Y.Z (e.g., 2.0.0)"}]);Y=b.replace(/^v/,"")}else Y=_3(J,w)}if(console.log(),console.log(`  ${H.bold("Version bump:")} ${J} -> ${H.green(Y)}`),await w0(`Create release PR for ${D} v${Y}?`,{yes:F.yes})!=="confirmed"){console.log("Cancelled.");return}let G,B=!0;if(F.dir){if(!w1(F.dir))console.log(H.red(`Error: Directory not found: ${F.dir}`)),process.exit(1);G=k6(F.dir),B=!1}else G=Ky0(d5(zy0(),`nemar-release-${D}-`));if(B){let C=`https://github.com/${Q.github_repo}.git`,P=O("Cloning dataset...").start(),w=await E1(C,G);if(!w.success)P.fail(`Clone failed: ${w.error}`),process.exit(1);P.succeed("Cloned dataset")}let W=`release/v${Y}`,q=O("Creating release branch...").start(),K=kD({cmd:["git","checkout","-b",W],cwd:G,stdout:"pipe",stderr:"pipe"});if(await K.exited!==0){let C=await new Response(K.stderr).text();q.fail(`Failed to create branch: ${C.trim()}`),process.exit(1)}q.succeed(`Created branch: ${W}`);let Z=d5(G,"dataset_description.json");if(!w1(Z))console.log(H.red("Error: dataset_description.json not found in repo")),process.exit(1);let z;try{z=JSON.parse(rX(Z,"utf-8"))}catch(C){if(C instanceof SyntaxError)console.log(H.red("Error: dataset_description.json contains invalid JSON"));else console.log(H.red(`Error: Could not read dataset_description.json: ${C}`));process.exit(1)}z.Version=Y,Aa(Z,`${JSON.stringify(z,null,2)}
 `);let E=O("Committing version bump...").start(),U=kD({cmd:["git","add","dataset_description.json"],cwd:G,stdout:"pipe",stderr:"pipe"});if(await U.exited!==0){let C=await new Response(U.stderr).text();E.fail(`Failed to stage changes: ${C.trim()}`),process.exit(1)}let L=kD({cmd:["git","commit","-m",`Bump version to ${Y}`],cwd:G,stdout:"pipe",stderr:"pipe"});if(await L.exited!==0){let C=await new Response(L.stderr).text();E.fail(`Commit failed: ${C.trim()}`),process.exit(1)}E.succeed("Committed version bump");let A=O("Pushing branch...").start(),N=await K$(G,W);if(!N.success)A.fail(`Push failed: ${N.error}`),process.exit(1);A.succeed("Pushed branch");let j=!1,R=O("Creating pull request...").start();try{let C=`Release v${Y}`,P=`## Version Bump
 
 Bumps ${D} from ${J} to ${Y}.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "nemar-cli",
-  "version": "0.9.5-dev.1826",
+  "version": "0.9.5-dev.1842",
   "description": "CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",
   "type": "module",
   "main": "dist/index.js",