nemar-cli 0.9.15-dev.2243 → 0.9.15-dev.2245
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +1 -1
- package/package.json +1 -1
package/dist/index.js
CHANGED
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@@ -102,7 +102,7 @@ ${u.dim(`eta: ${e.eta}`)}`:"";process.stderr.write(`${t}
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${r} ${e.message}
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${n}${i}
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${t}
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-
`)}var $z=!1;var nD=A(()=>{He()});var Fz;var Cz=A(()=>{Fz={name:"nemar-cli",version:"0.9.15-dev.2243",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",ajv:"^8.20.0","ajv-formats":"^3.0.1",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var To;var Om=A(()=>{Cz();To=Fz.version});function V(e){if(e instanceof Error)return e.message;return String(e)}var q,No;var er=A(()=>{q=class q extends Error{statusCode;details;step;constructor(e,t,r,n){super(t);this.statusCode=e;this.details=r;this.step=n;this.name="ApiError"}};No=class No extends q{mode;eta;constructor(e,t,r,n){super(503,t,n);this.mode=e;this.eta=r;this.name="MaintenanceError"}}});function Rz(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(sD)return iD;return ht().apiUrl||iD}async function P(e,t={},r=!1,n){let i=`${Rz()}${e}`,s={"Content-Type":"application/json","X-CLI-Version":To,...t.headers};if(r){let c=ht();if(!c.apiKey&&r===!0)throw new q(401,"Not authenticated. 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}).passthrough(),DQe=E.object({dataset:iTe}).passthrough(),ki=E.object({value:E.string(),count:E.number().int().nonnegative()}),oTe=E.object({values:E.array(ki),distinct_total:E.number().int().nonnegative(),truncated:E.boolean()}),Am=E.object({"electrode-system":E.array(ki).optional(),source:E.array(ki).optional(),zarr:E.array(ki).optional(),powerline:E.array(ki).optional(),"bids-version":E.array(ki).optional(),"hed-version":E.array(ki).optional(),license:E.array(ki).optional(),modality:E.array(ki).optional(),task:oTe.optional(),warning:E.string().optional()}).passthrough(),wQe=E.object({schema_version:E.literal(rTe),doc_type:E.literal("dataset"),dataset_id:E.string().regex(/^[a-z]{2}\d+$/,"neuroschema dataset_id pattern"),name:E.string(),source:yD,recording_modality:E.array(E.string()).min(1),description:E.string().nullable().optional(),bids_version:E.string().nullable().optional(),license:E.string().nullable().optional()}).passthrough()});var km=A(()=>{gD();gH();xD()});async function Im(e){return P(`/datasets/${e}/ci/status`,{},!0)}async function DH(e){return P(`/datasets/${e}/manifest`,{},!0)}async function Tm(e,t){return P(`/datasets/${e}/manifest/${t}`,{},!0)}function wH(e){let t=e;if(!t.status)t.status="active";else if(!["active","archived","deleted"].includes(t.status))throw Error(`Invalid dataset status: ${t.status}`);if(!t.visibility)t.visibility="private";else if(!["public","private"].includes(t.visibility))throw Error(`Invalid dataset visibility: ${t.visibility}`);return t}async function Uc(e={}){let t=new URLSearchParams;if(e.mine)t.set("mine","true");if(e.search)t.set("search",e.search);if(e.modality)t.set("modality",e.modality);if(e.author)t.set("author",e.author);if(e.task)t.set("task",e.task);if(e.license)t.set("license",e.license);if(e.hasDoi)t.set("has_doi","true");if(e.hasHed)t.set("has_hed","1");if(e.hasZarr)t.set("has_zarr","1");if(e.hasZarrVerified)t.set("has_zarr_verified","1");if(e.dataComplete)t.set("data_complete","1");if(e.recent)t.set("recent",String(e.recent));if(e.sort)t.set("sort",e.sort);if(e.limit!=null)t.set("limit",String(e.limit));if(e.offset!=null)t.set("offset",String(e.offset));if(e.owner)t.set("owner",e.owner);if(e.facets)for(let[i,s]of Object.entries(e.facets))t.set(i,s);if(e.includeUnknown)t.set("include_unknown","1");let r=t.toString()?`?${t.toString()}`:"",n=await P(`/datasets${r}`,{},e.mine?!0:"optional");return n.datasets=n.datasets.map(wH),n}async function EH(e){return P(`/datasets/resolve/${e}`,{},"optional")}async function SH(){return P("/datasets/facets",{signal:AbortSignal.timeout(5000)},"optional",Am)}async function $H(e,t={}){let r=new URLSearchParams({q:e});if(t.modality)r.set("modality",t.modality);if(t.limit)r.set("limit",String(t.limit));if(t.hasHed)r.set("has_hed","1");if(t.hasZarr)r.set("has_zarr","1");if(t.hasZarrVerified)r.set("has_zarr_verified","1");if(t.author)r.set("author",t.author);if(t.task)r.set("task",t.task);if(t.license)r.set("license",t.license);if(t.hasDoi)r.set("has_doi","true");if(t.dataComplete)r.set("data_complete","1");if(t.recent)r.set("recent",String(t.recent));if(t.facets)for(let[i,s]of Object.entries(t.facets))r.set(i,s);if(t.includeUnknown)r.set("include_unknown","1");return await P(`/datasets/search?${r.toString()}`,{},"optional",_H)}async function gt(e){let t=await P(`/datasets/${e}`,{},"optional");return wH(t.dataset)}async function CH(e){return P(`/datasets/${e}/versions`,{},!0)}async function Nm(e){return P("/datasets",{method:"POST",body:JSON.stringify(e)},!0)}async function qm(e){return P(`/datasets/${e}/finalize`,{method:"POST"},!0)}async function bD(e){return P(`/datasets/${e}/request-access`,{method:"POST"},!0)}async function FH(e,t){let r=t?`?status=${t}`:"";return P(`/datasets/${e}/access-requests${r}`,{},!0)}async function RH(e,t){return P(`/datasets/${e}/access-requests/${t}/approve`,{method:"POST"},!0)}async function OH(e,t){return P(`/datasets/${e}/access-requests/${t}/deny`,{method:"POST"},!0)}async function AH(e,t){return P(`/datasets/${e}/invite`,{method:"POST",body:JSON.stringify({username:t})},!0)}async function kH(e){return P(`/datasets/${e}/collaborators`,{},!0)}async function PH(e,t){return P(`/admin/datasets/${e}/enrichment`,{method:"POST",body:JSON.stringify(t)},!0)}var Pm;var qs=A(()=>{km();Ns();Pm=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var Vc;var jH=A(()=>{Vc=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function zc(e){return P(`/datasets/${e}/publish/request`,{method:"POST"},!0)}async function BH(e){return P(`/datasets/${e}/publish/status`,{},!0)}async function LH(e){return P(`/datasets/${e}/publish/resend`,{method:"POST"},!0)}async function UH(e){let t=e?`?status=${e}`:"";return P(`/admin/publish/requests${t}`,{},!0)}async function VH(e,t){return P(`/admin/publish/${e}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:t})},!0)}function aTe(e,t=[]){if(e){let r=Vc.indexOf(e);if(r>=0)return r+1}return Math.min(t.length+1,Vc.length)}function cTe(e){if(!(e instanceof 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`)}var DD=!1;var GH={};ji(GH,{runCommand:()=>R});var{spawn:uTe}=globalThis.Bun;async function R(e,t={}){let r={...process.env,GIT_TERMINAL_PROMPT:"0",...t.env};for(let l of t.unsetEnv??[])delete r[l];let n=uTe({cmd:e,cwd:t.cwd,stdout:"pipe",stderr:"pipe",env:r}),i=!1,s;if(t.timeout)s=setTimeout(()=>{i=!0,n.kill()},t.timeout);if(wD()){let l=t.cwd?` (cwd=${t.cwd})`:"";wd(u.dim(`$ ${e.join(" ")}${l}`))}let o=await new Response(n.stdout).text(),a=await new Response(n.stderr).text(),c=await n.exited;if(s)clearTimeout(s);if(wD()){if(o.trim())wd(u.dim(o.trimEnd()));if(a.trim())wd(u.yellow(a.trimEnd()));wd(u.dim(`(exit ${c})`))}if(i)return{stdout:o,stderr:a||`Command timed out after ${Math.round(t.timeout/1000)}s`,exitCode:c??1};return{stdout:o,stderr:a,exitCode:c}}var Ut=A(()=>{He()});async function lTe(){try{let{exitCode:e,stderr:t}=await R(["ssh","-T","-o","BatchMode=yes","-o","ConnectTimeout=5","git@github.com"]),r=t.includes("successfully authenticated");if(!r)console.warn("SSH test to github.com failed:",{exitCode:e,stderr:t.trim().slice(0,500)});return{works:r,error:r?void 0:t.trim().slice(0,500)}}catch(e){let t=e instanceof Error?e.message:String(e);return console.warn("SSH test exception:",t),{works:!1,error:t}}}async function Ed(){try{let{stdout:e,exitCode:t,stderr:r}=await R(["gh","auth","token"]);if(t!==0)return console.warn("gh CLI returned non-zero exit code:",t),console.warn("stderr:",r),{token:null,error:`gh auth token failed: ${r.trim()||"unknown error"}`};if(!e.trim())return console.warn("gh auth token returned empty output"),{token:null,error:"gh CLI returned empty token"};return{token:e.trim()}}catch(e){let t=e instanceof Error?e.message:String(e);if(console.error("Failed to get GitHub token from gh CLI:",t),t.includes("ENOENT")||t.includes("not found"))return{token:null,error:"gh CLI not installed (command not found)"};return{token:null,error:`gh CLI error: ${t}`}}}async function jm(e){try{let{stdout:t,exitCode:r,stderr:n}=await R(["gh","api","user","--jq",".login"]);if(r!==0){if(n.includes("not logged in")||n.includes("auth login"))return{authenticated:!1,error:"gh CLI not authenticated. 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You may need to accept it manually via GitHub.`}}let{exitCode:s,stderr:o}=await R(["gh","api","--method","PATCH",`/user/repository_invitations/${i}`]);if(s!==0)return{accepted:!1,error:`Failed to accept invitation: ${o.trim()||"unknown error"}`};return{accepted:!0}}async function ri(e,t,r="origin"){let n=t;if(process.env.GH_TOKEN&&t.startsWith("git@github.com:")){let i=process.env.GH_TOKEN.trim();if(!i||/\s/.test(i))return{success:!1,error:"GH_TOKEN environment variable is set but appears malformed (empty or contains whitespace)"};n=`https://github.com/${t.replace("git@github.com:","")}`,await R(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${i}'`],{cwd:e})}else if(t.startsWith("git@github.com:")){let i=t.replace("git@github.com:",""),s=await Ed();if(s.token)n=`https://github.com/${i}`,await R(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${s.token}'`],{cwd:e});else{let o=await lTe();if(o.works)n=t;else return{success:!1,error:`GitHub authentication not configured.
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gh CLI failed: ${s.error||"could not get token"}
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package/package.json
CHANGED