nemar-cli 0.9.10-dev.2125 → 0.9.10-dev.2126

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2) hide show
  1. package/dist/index.js +1 -1
  2. package/package.json +1 -1
package/dist/index.js CHANGED
@@ -102,7 +102,7 @@ ${u.dim(`eta: ${e.eta}`)}`:"";process.stderr.write(`${t}
102
102
  ${r} ${e.message}
103
103
  ${n}${i}
104
104
  ${t}
105
- `)}var ez=!1;var z_=O(()=>{Ye()});var rz;var tz=O(()=>{rz={name:"nemar-cli",version:"0.9.10-dev.2125",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",ajv:"^8.20.0","ajv-formats":"^3.0.1",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var Ao;var _m=O(()=>{tz();Ao=rz.version});function V(e){if(e instanceof Error)return e.message;return String(e)}var M,ko;var yr=O(()=>{M=class M extends Error{statusCode;details;step;constructor(e,t,r,n){super(t);this.statusCode=e;this.details=r;this.step=n;this.name="ApiError"}};ko=class ko extends M{mode;eta;constructor(e,t,r,n){super(503,t,n);this.mode=e;this.eta=r;this.name="MaintenanceError"}}});function nz(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(G_)return H_;return ht().apiUrl||H_}async function I(e,t={},r=!1,n){let i=`${nz()}${e}`,s={"Content-Type":"application/json","X-CLI-Version":Ao,...t.headers};if(r){let c=ht();if(!c.apiKey&&r===!0)throw new M(401,"Not authenticated. Run 'nemar auth login' first.");if(c.apiKey)s.Authorization=`Bearer ${c.apiKey}`}let o;try{o=await fetch(i,{...t,headers:s})}catch(c){throw new M(0,`Network error: Could not connect to ${nz()}`,{originalError:c instanceof Error?c.message:String(c)})}let a;try{a=await o.json()}catch{throw new M(o.status,`Invalid response from server (status ${o.status})`)}if(!o.ok){if(o.status===503&&(a.mode==="read-only"||a.mode==="full")){let c=typeof a.message==="string"?a.message:"NEMAR is in maintenance mode. Please retry shortly.",l=typeof a.eta==="string"?a.eta:null,d=new ko(a.mode,c,l,a.details);throw vm(d),d}throw new M(o.status,a.error||a.message||"Request failed",a.details,typeof a.step==="string"?a.step:void 0)}if(n){let c=n.safeParse(a);if(!c.success)throw new M(o.status,`Response for ${e} did not match the expected NEMAR contract`,{issues:c.error.issues});return c.data}return a}var H_="https://nemar-api-dev.sccn-org.workers.dev",G_;var Ps=O(()=>{ks();z_();_m();yr();G_=H_.includes("workers.dev")});async function iz(e,t){let r=new URLSearchParams;if(e)r.set("status",e);if(t)r.set("role",t);let n=r.toString()?`?${r.toString()}`:"";return I(`/admin/users${n}`,{},!0)}async function sz(e){return I(`/admin/approve/${e}`,{method:"POST"},!0)}async function oz(e){return I(`/admin/approve/by-id/${e}`,{method:"POST"},!0)}async function az(e){return I(`/admin/revoke/${e}`,{method:"POST"},!0)}async function cz(e,t){return I(`/admin/users/${e}/role`,{method:"POST",body:JSON.stringify({role:t})},!0)}async function W_(e,t){return I(`/admin/datasets/${e}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:t})},!0)}async function uz(e){return I(`/datasets/${e}/publish`,{method:"POST"},!0)}async function lz(e){return I(`/admin/datasets/${e}/ci`,{},!0)}async function Ri(e){return I(`/admin/datasets/${e}/ci`,{method:"POST"},!0)}async function K_(e){return I(`/admin/datasets/${e}/ci/validate`,{method:"POST"},!0)}async function Y_(e){return I(`/admin/datasets/${e}/ci/sync`,{method:"POST"},!0)}async function dz(e,t){return I(`/admin/datasets/${e}/doi/concept`,{method:"POST",body:JSON.stringify(t)},!0)}async function dd(e){return I(`/admin/datasets/${e}/doi`,{},!0)}async function J_(e,t){return I(`/admin/datasets/${e}/doi/update`,{method:"POST",body:JSON.stringify(t)},!0)}async function fz(e,t){return I(`/admin/datasets/${e}/withdraw`,{method:"POST",body:JSON.stringify({reason:t.reason,dry_run:t.dryRun})},!0)}async function pz(e,t){return I(`/admin/datasets/${e}/restore`,{method:"POST",body:JSON.stringify({dry_run:t.dryRun})},!0)}async function mz(e){return I(`/admin/datasets/${e}/reset`,{method:"POST"},!0)}async function hz(e,t=!1){return I(`/admin/datasets/${e}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:t})},!0)}async function gz(e){return I("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function yz(e){return I("/admin/datasets/import",{method:"POST",body:JSON.stringify(e)},!0)}async function xz(e){return I("/admin/datasets/exemplar",{method:"POST",body:JSON.stringify(e)},!0)}async function bz(e){return I(`/admin/datasets/${e}/exemplar/remint-dois`,{method:"POST"},!0)}async function X_(e,t){let r=new URLSearchParams;if(e)r.set("status",e);if(t!==void 0)r.set("blocklisted",t?"1":"0");let n=r.toString();return I(`/admin/imports${n?`?${n}`:""}`,{},!0)}async function vz(e){return I(`/admin/imports/${e}/rollback`,{method:"POST"},!0)}async function _z(e){return I(`/admin/imports/${e}/retry`,{method:"POST"},!0)}async function Q_(e){return I(`/admin/imports/${e}/verify`,{method:"POST"},!0)}async function Dz(e){return I("/admin/imports/dispatch-cooldown",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function Oc(e,t){return I(`/admin/datasets/${e}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(t??{})},!0)}async function wz(e,t){return I("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:e,...t??{}})},!0)}async function Ez(e){let t=e?.limit??15;return I(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Sz(){return I("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function $z(e){let t=e?.limit??15,r=new URLSearchParams({limit:String(t)});if(e?.olderThan!=null)r.set("older-than",String(e.olderThan));if(e?.before!=null)r.set("before",e.before);return I(`/admin/datasets/data-integrity-sweep?${r.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Cz(){return I("/admin/datasets/data-integrity-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Fz(e,t){let r=t?.write?"":"?dry_run=1";return I(`/admin/datasets/${e}/availability-report${r}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Rz(e){let t=e?.limit??30,r=new URLSearchParams({limit:String(t)});if(e?.missingOnly)r.set("missing-only","1");return I(`/admin/datasets/availability-report-sweep?${r.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Oz(){return I("/admin/datasets/availability-report-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Az(e){let t=new URLSearchParams;if(e?.prefix)t.set("prefix",e.prefix);if(e?.visibility)t.set("visibility",e.visibility);if(e?.limit)t.set("limit",String(e.limit));let r=t.toString()?`?${t.toString()}`:"";return I(`/admin/fleet/drift${r}`,{},!0)}async function Ac(e,t){return I(`/admin/datasets/${e}/enforce`,{method:"POST",body:JSON.stringify({dry_run:t})},!0)}async function kz(e){return I("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:e.prefix,visibility:e.visibility,limit:e.limit,dry_run:e.dryRun})},!0)}async function Pz(e,t=!1){return I(`/admin/datasets/${e}/revalidate${t?"?force=true":""}`,{method:"POST"},!0)}async function Iz(e){let t=e?`?user=${encodeURIComponent(e)}`:"";return I(`/admin/email-preferences${t}`,{},!0)}async function Tz(e,t){let r=t?`?user=${encodeURIComponent(t)}`:"";return I(`/admin/email-preferences${r}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(e)},!0)}async function Z_(e){return I("/admin/notify",{method:"POST",body:JSON.stringify(e)},!0)}async function Nz(){return I("/admin/summary/coverage",{},!0)}async function qz(e,t,r){return I("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:e,version:t,skip_canary:r?.skipCanary??!1})},!0)}async function eD(e){return I("/admin/doctor/scan",{method:"POST",body:JSON.stringify({...e?.check&&{check:e.check},...e?.datasetId&&{dataset_id:e.datasetId}})},!0)}async function tD(e){return I("/admin/doctor/fix",{method:"POST",body:JSON.stringify({check:e.check,...e.datasetId&&{dataset_id:e.datasetId},...e.dryRun&&{dry_run:!0}})},!0)}var kc=O(()=>{Ps()});async function Zn(e,t){return I(`/datasets/${e}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function rD(e,t){return I(`/datasets/${e}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function jz(e){return I(`/admin/datasets/${e}/files`,{},!0)}async function Mz(e){let t,r=0,n=[],i=!0;while(i){let s=await I(`/admin/datasets/${e}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:t})},!0);if(r+=s.locked,s.failed?.length)n.push(...s.failed);if(i=s.hasMore,t=s.continuation_token,i&&!t)throw new M(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:r,failed:n}}var Pc=O(()=>{Ps();yr()});async function wm(e){return I(`/datasets/${e}/ci/status`,{},!0)}async function Bz(e){return I(`/datasets/${e}/manifest`,{},!0)}async function Em(e,t){return I(`/datasets/${e}/manifest/${t}`,{},!0)}function Lz(e){let t=e;if(!t.status)t.status="active";else if(!["active","archived","deleted"].includes(t.status))throw Error(`Invalid dataset status: ${t.status}`);if(!t.visibility)t.visibility="private";else if(!["public","private"].includes(t.visibility))throw Error(`Invalid dataset visibility: ${t.visibility}`);return t}async function Ic(e={}){let t=new URLSearchParams;if(e.mine)t.set("mine","true");if(e.search)t.set("search",e.search);if(e.modality)t.set("modality",e.modality);if(e.author)t.set("author",e.author);if(e.task)t.set("task",e.task);if(e.license)t.set("license",e.license);if(e.hasDoi)t.set("has_doi","true");if(e.hasHed)t.set("has_hed","1");if(e.dataComplete)t.set("data_complete","1");if(e.recent)t.set("recent",String(e.recent));if(e.sort)t.set("sort",e.sort);if(e.limit!=null)t.set("limit",String(e.limit));if(e.offset!=null)t.set("offset",String(e.offset));if(e.owner)t.set("owner",e.owner);let r=t.toString()?`?${t.toString()}`:"",n=await I(`/datasets${r}`,{},e.mine?!0:"optional");return n.datasets=n.datasets.map(Lz),n}async function Uz(e){return I(`/datasets/resolve/${e}`,{},"optional")}async function Vz(e,t={}){let r=new URLSearchParams({q:e});if(t.modality)r.set("modality",t.modality);if(t.limit)r.set("limit",String(t.limit));if(t.hasHed)r.set("has_hed","1");return I(`/datasets/search?${r.toString()}`,{},"optional")}async function gt(e){let t=await I(`/datasets/${e}`,{},"optional");return Lz(t.dataset)}async function zz(e){return I(`/datasets/${e}/versions`,{},!0)}async function Sm(e){return I("/datasets",{method:"POST",body:JSON.stringify(e)},!0)}async function $m(e){return I(`/datasets/${e}/finalize`,{method:"POST"},!0)}async function nD(e){return I(`/datasets/${e}/request-access`,{method:"POST"},!0)}async function Hz(e,t){let r=t?`?status=${t}`:"";return I(`/datasets/${e}/access-requests${r}`,{},!0)}async function Gz(e,t){return I(`/datasets/${e}/access-requests/${t}/approve`,{method:"POST"},!0)}async function Wz(e,t){return I(`/datasets/${e}/access-requests/${t}/deny`,{method:"POST"},!0)}async function Kz(e,t){return I(`/datasets/${e}/invite`,{method:"POST",body:JSON.stringify({username:t})},!0)}async function Yz(e){return I(`/datasets/${e}/collaborators`,{},!0)}async function Jz(e,t){return I(`/admin/datasets/${e}/enrichment`,{method:"POST",body:JSON.stringify(t)},!0)}var Dm;var Po=O(()=>{Ps();Dm=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var Tc;var tH=O(()=>{Tc=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function Nc(e){return I(`/datasets/${e}/publish/request`,{method:"POST"},!0)}async function nH(e){return I(`/datasets/${e}/publish/status`,{},!0)}async function iH(e){return I(`/datasets/${e}/publish/resend`,{method:"POST"},!0)}async function sH(e){let t=e?`?status=${e}`:"";return I(`/admin/publish/requests${t}`,{},!0)}async function oH(e,t){return I(`/admin/publish/${e}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:t})},!0)}function H3e(e,t=[]){if(e){let r=Tc.indexOf(e);if(r>=0)return r+1}return Math.min(t.length+1,Tc.length)}function G3e(e){if(!(e instanceof M))return!1;if(e.statusCode===0)return!0;if(e.statusCode===429)return!0;if(e.statusCode>=500&&e.statusCode<600)return!0;if(e.statusCode===403&&/repository has been locked/i.test(e.message))return!0;return!1}async function qc(e,t=!1,r=!1,n=!1,i,s){let c,l,d=0,f=!1,m,p=t,g=[],y;function x(v,_,E,S){if(!s)return;s({step:v,stepIndex:H3e(v,_),stepTotal:Tc.length,s3LockLocked:E,s3LockTotal:S,s3LockResumed:v==="s3_lock"&&f?!0:void 0})}for(let v=1;v<=5;v++)try{let _,E=!0;do{if(_=await I(`/admin/publish/${e}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:E?p:!0,sandbox:r,s3_lock_continuation_token:c,s3_lock_total:l,skip_ci_check:n})},!0),E=!1,_.step_results)g.push(..._.step_results);if(_.s3_lock_total!==void 0)l=_.s3_lock_total;if(_.s3_lock_batch_count!==void 0)d+=_.s3_lock_batch_count;let S=_.step??_.step_results?.[_.step_results.length-1]?.step;if(S&&(S!==m||S==="s3_lock"))x(S,_.steps_completed??[],S==="s3_lock"?d:void 0,S==="s3_lock"?l:void 0),m=S;if(_.hasMore&&_.s3_lock_continuation_token!==void 0)c=_.s3_lock_continuation_token;else break}while(_.hasMore);if(g.length>0)_.step_results=rH(g);return _}catch(_){if(y=_,v===5||!G3e(_)){if(_ instanceof M&&g.length>0)_.stepResults=rH(g);throw _}let S=_;if(i?.({attempt:v,maxAttempts:5,delayMs:1e4,step:S.step,error:S.message}),await new Promise((D)=>setTimeout(D,1e4)),p=!0,c!==void 0)f=!0}throw y}function rH(e){let t=new Map;for(let r of e)t.set(r.step,r);return Array.from(t.values())}var fd=O(()=>{tH();Ps();yr()});function uH(e){oD=e}function aD(){return oD}function pd(e){if(oD)process.stderr.write(`${e}
105
+ `)}var ez=!1;var z_=O(()=>{Ye()});var rz;var tz=O(()=>{rz={name:"nemar-cli",version:"0.9.10-dev.2126",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",ajv:"^8.20.0","ajv-formats":"^3.0.1",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var Ao;var _m=O(()=>{tz();Ao=rz.version});function V(e){if(e instanceof Error)return e.message;return String(e)}var M,ko;var yr=O(()=>{M=class M extends Error{statusCode;details;step;constructor(e,t,r,n){super(t);this.statusCode=e;this.details=r;this.step=n;this.name="ApiError"}};ko=class ko extends M{mode;eta;constructor(e,t,r,n){super(503,t,n);this.mode=e;this.eta=r;this.name="MaintenanceError"}}});function nz(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(G_)return H_;return ht().apiUrl||H_}async function I(e,t={},r=!1,n){let i=`${nz()}${e}`,s={"Content-Type":"application/json","X-CLI-Version":Ao,...t.headers};if(r){let c=ht();if(!c.apiKey&&r===!0)throw new M(401,"Not authenticated. Run 'nemar auth login' first.");if(c.apiKey)s.Authorization=`Bearer ${c.apiKey}`}let o;try{o=await fetch(i,{...t,headers:s})}catch(c){throw new M(0,`Network error: Could not connect to ${nz()}`,{originalError:c instanceof Error?c.message:String(c)})}let a;try{a=await o.json()}catch{throw new M(o.status,`Invalid response from server (status ${o.status})`)}if(!o.ok){if(o.status===503&&(a.mode==="read-only"||a.mode==="full")){let c=typeof a.message==="string"?a.message:"NEMAR is in maintenance mode. Please retry shortly.",l=typeof a.eta==="string"?a.eta:null,d=new ko(a.mode,c,l,a.details);throw vm(d),d}throw new M(o.status,a.error||a.message||"Request failed",a.details,typeof a.step==="string"?a.step:void 0)}if(n){let c=n.safeParse(a);if(!c.success)throw new M(o.status,`Response for ${e} did not match the expected NEMAR contract`,{issues:c.error.issues});return c.data}return a}var H_="https://nemar-api-dev.sccn-org.workers.dev",G_;var Ps=O(()=>{ks();z_();_m();yr();G_=H_.includes("workers.dev")});async function iz(e,t){let r=new URLSearchParams;if(e)r.set("status",e);if(t)r.set("role",t);let n=r.toString()?`?${r.toString()}`:"";return I(`/admin/users${n}`,{},!0)}async function sz(e){return I(`/admin/approve/${e}`,{method:"POST"},!0)}async function oz(e){return I(`/admin/approve/by-id/${e}`,{method:"POST"},!0)}async function az(e){return I(`/admin/revoke/${e}`,{method:"POST"},!0)}async function cz(e,t){return I(`/admin/users/${e}/role`,{method:"POST",body:JSON.stringify({role:t})},!0)}async function W_(e,t){return I(`/admin/datasets/${e}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:t})},!0)}async function uz(e){return I(`/datasets/${e}/publish`,{method:"POST"},!0)}async function lz(e){return I(`/admin/datasets/${e}/ci`,{},!0)}async function Ri(e){return I(`/admin/datasets/${e}/ci`,{method:"POST"},!0)}async function K_(e){return I(`/admin/datasets/${e}/ci/validate`,{method:"POST"},!0)}async function Y_(e){return I(`/admin/datasets/${e}/ci/sync`,{method:"POST"},!0)}async function dz(e,t){return I(`/admin/datasets/${e}/doi/concept`,{method:"POST",body:JSON.stringify(t)},!0)}async function dd(e){return I(`/admin/datasets/${e}/doi`,{},!0)}async function J_(e,t){return I(`/admin/datasets/${e}/doi/update`,{method:"POST",body:JSON.stringify(t)},!0)}async function fz(e,t){return I(`/admin/datasets/${e}/withdraw`,{method:"POST",body:JSON.stringify({reason:t.reason,dry_run:t.dryRun})},!0)}async function pz(e,t){return I(`/admin/datasets/${e}/restore`,{method:"POST",body:JSON.stringify({dry_run:t.dryRun})},!0)}async function mz(e){return I(`/admin/datasets/${e}/reset`,{method:"POST"},!0)}async function hz(e,t=!1){return I(`/admin/datasets/${e}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:t})},!0)}async function gz(e){return I("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function yz(e){return I("/admin/datasets/import",{method:"POST",body:JSON.stringify(e)},!0)}async function xz(e){return I("/admin/datasets/exemplar",{method:"POST",body:JSON.stringify(e)},!0)}async function bz(e){return I(`/admin/datasets/${e}/exemplar/remint-dois`,{method:"POST"},!0)}async function X_(e,t){let r=new URLSearchParams;if(e)r.set("status",e);if(t!==void 0)r.set("blocklisted",t?"1":"0");let n=r.toString();return I(`/admin/imports${n?`?${n}`:""}`,{},!0)}async function vz(e){return I(`/admin/imports/${e}/rollback`,{method:"POST"},!0)}async function _z(e){return I(`/admin/imports/${e}/retry`,{method:"POST"},!0)}async function Q_(e){return I(`/admin/imports/${e}/verify`,{method:"POST"},!0)}async function Dz(e){return I("/admin/imports/dispatch-cooldown",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function Oc(e,t){return I(`/admin/datasets/${e}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(t??{})},!0)}async function wz(e,t){return I("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:e,...t??{}})},!0)}async function Ez(e){let t=e?.limit??15;return I(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Sz(){return I("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function $z(e){let t=e?.limit??15,r=new URLSearchParams({limit:String(t)});if(e?.olderThan!=null)r.set("older-than",String(e.olderThan));if(e?.before!=null)r.set("before",e.before);return I(`/admin/datasets/data-integrity-sweep?${r.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Cz(){return I("/admin/datasets/data-integrity-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Fz(e,t){let r=t?.write?"":"?dry_run=1";return I(`/admin/datasets/${e}/availability-report${r}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Rz(e){let t=e?.limit??30,r=new URLSearchParams({limit:String(t)});if(e?.missingOnly)r.set("missing-only","1");return I(`/admin/datasets/availability-report-sweep?${r.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Oz(){return I("/admin/datasets/availability-report-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Az(e){let t=new URLSearchParams;if(e?.prefix)t.set("prefix",e.prefix);if(e?.visibility)t.set("visibility",e.visibility);if(e?.limit)t.set("limit",String(e.limit));let r=t.toString()?`?${t.toString()}`:"";return I(`/admin/fleet/drift${r}`,{},!0)}async function Ac(e,t){return I(`/admin/datasets/${e}/enforce`,{method:"POST",body:JSON.stringify({dry_run:t})},!0)}async function kz(e){return I("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:e.prefix,visibility:e.visibility,limit:e.limit,dry_run:e.dryRun})},!0)}async function Pz(e,t=!1){return I(`/admin/datasets/${e}/revalidate${t?"?force=true":""}`,{method:"POST"},!0)}async function Iz(e){let t=e?`?user=${encodeURIComponent(e)}`:"";return I(`/admin/email-preferences${t}`,{},!0)}async function Tz(e,t){let r=t?`?user=${encodeURIComponent(t)}`:"";return I(`/admin/email-preferences${r}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(e)},!0)}async function Z_(e){return I("/admin/notify",{method:"POST",body:JSON.stringify(e)},!0)}async function Nz(){return I("/admin/summary/coverage",{},!0)}async function qz(e,t,r){return I("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:e,version:t,skip_canary:r?.skipCanary??!1})},!0)}async function eD(e){return I("/admin/doctor/scan",{method:"POST",body:JSON.stringify({...e?.check&&{check:e.check},...e?.datasetId&&{dataset_id:e.datasetId}})},!0)}async function tD(e){return I("/admin/doctor/fix",{method:"POST",body:JSON.stringify({check:e.check,...e.datasetId&&{dataset_id:e.datasetId},...e.dryRun&&{dry_run:!0}})},!0)}var kc=O(()=>{Ps()});async function Zn(e,t){return I(`/datasets/${e}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function rD(e,t){return I(`/datasets/${e}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function jz(e){return I(`/admin/datasets/${e}/files`,{},!0)}async function Mz(e){let t,r=0,n=[],i=!0;while(i){let s=await I(`/admin/datasets/${e}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:t})},!0);if(r+=s.locked,s.failed?.length)n.push(...s.failed);if(i=s.hasMore,t=s.continuation_token,i&&!t)throw new M(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:r,failed:n}}var Pc=O(()=>{Ps();yr()});async function wm(e){return I(`/datasets/${e}/ci/status`,{},!0)}async function Bz(e){return I(`/datasets/${e}/manifest`,{},!0)}async function Em(e,t){return I(`/datasets/${e}/manifest/${t}`,{},!0)}function Lz(e){let t=e;if(!t.status)t.status="active";else if(!["active","archived","deleted"].includes(t.status))throw Error(`Invalid dataset status: ${t.status}`);if(!t.visibility)t.visibility="private";else if(!["public","private"].includes(t.visibility))throw Error(`Invalid dataset visibility: ${t.visibility}`);return t}async function Ic(e={}){let t=new URLSearchParams;if(e.mine)t.set("mine","true");if(e.search)t.set("search",e.search);if(e.modality)t.set("modality",e.modality);if(e.author)t.set("author",e.author);if(e.task)t.set("task",e.task);if(e.license)t.set("license",e.license);if(e.hasDoi)t.set("has_doi","true");if(e.hasHed)t.set("has_hed","1");if(e.dataComplete)t.set("data_complete","1");if(e.recent)t.set("recent",String(e.recent));if(e.sort)t.set("sort",e.sort);if(e.limit!=null)t.set("limit",String(e.limit));if(e.offset!=null)t.set("offset",String(e.offset));if(e.owner)t.set("owner",e.owner);let r=t.toString()?`?${t.toString()}`:"",n=await I(`/datasets${r}`,{},e.mine?!0:"optional");return n.datasets=n.datasets.map(Lz),n}async function Uz(e){return I(`/datasets/resolve/${e}`,{},"optional")}async function Vz(e,t={}){let r=new URLSearchParams({q:e});if(t.modality)r.set("modality",t.modality);if(t.limit)r.set("limit",String(t.limit));if(t.hasHed)r.set("has_hed","1");return I(`/datasets/search?${r.toString()}`,{},"optional")}async function gt(e){let t=await I(`/datasets/${e}`,{},"optional");return Lz(t.dataset)}async function zz(e){return I(`/datasets/${e}/versions`,{},!0)}async function Sm(e){return I("/datasets",{method:"POST",body:JSON.stringify(e)},!0)}async function $m(e){return I(`/datasets/${e}/finalize`,{method:"POST"},!0)}async function nD(e){return I(`/datasets/${e}/request-access`,{method:"POST"},!0)}async function Hz(e,t){let r=t?`?status=${t}`:"";return I(`/datasets/${e}/access-requests${r}`,{},!0)}async function Gz(e,t){return I(`/datasets/${e}/access-requests/${t}/approve`,{method:"POST"},!0)}async function Wz(e,t){return I(`/datasets/${e}/access-requests/${t}/deny`,{method:"POST"},!0)}async function Kz(e,t){return I(`/datasets/${e}/invite`,{method:"POST",body:JSON.stringify({username:t})},!0)}async function Yz(e){return I(`/datasets/${e}/collaborators`,{},!0)}async function Jz(e,t){return I(`/admin/datasets/${e}/enrichment`,{method:"POST",body:JSON.stringify(t)},!0)}var Dm;var Po=O(()=>{Ps();Dm=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var Tc;var tH=O(()=>{Tc=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function Nc(e){return I(`/datasets/${e}/publish/request`,{method:"POST"},!0)}async function nH(e){return I(`/datasets/${e}/publish/status`,{},!0)}async function iH(e){return I(`/datasets/${e}/publish/resend`,{method:"POST"},!0)}async function sH(e){let t=e?`?status=${e}`:"";return I(`/admin/publish/requests${t}`,{},!0)}async function oH(e,t){return I(`/admin/publish/${e}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:t})},!0)}function H3e(e,t=[]){if(e){let r=Tc.indexOf(e);if(r>=0)return r+1}return Math.min(t.length+1,Tc.length)}function G3e(e){if(!(e instanceof M))return!1;if(e.statusCode===0)return!0;if(e.statusCode===429)return!0;if(e.statusCode>=500&&e.statusCode<600)return!0;if(e.statusCode===403&&/repository has been locked/i.test(e.message))return!0;return!1}async function qc(e,t=!1,r=!1,n=!1,i,s){let c,l,d=0,f=!1,m,p=t,g=[],y;function x(v,_,E,S){if(!s)return;s({step:v,stepIndex:H3e(v,_),stepTotal:Tc.length,s3LockLocked:E,s3LockTotal:S,s3LockResumed:v==="s3_lock"&&f?!0:void 0})}for(let v=1;v<=5;v++)try{let _,E=!0;do{if(_=await I(`/admin/publish/${e}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:E?p:!0,sandbox:r,s3_lock_continuation_token:c,s3_lock_total:l,skip_ci_check:n})},!0),E=!1,_.step_results)g.push(..._.step_results);if(_.s3_lock_total!==void 0)l=_.s3_lock_total;if(_.s3_lock_batch_count!==void 0)d+=_.s3_lock_batch_count;let S=_.step??_.step_results?.[_.step_results.length-1]?.step;if(S&&(S!==m||S==="s3_lock"))x(S,_.steps_completed??[],S==="s3_lock"?d:void 0,S==="s3_lock"?l:void 0),m=S;if(_.hasMore&&_.s3_lock_continuation_token!==void 0)c=_.s3_lock_continuation_token;else break}while(_.hasMore);if(g.length>0)_.step_results=rH(g);return _}catch(_){if(y=_,v===5||!G3e(_)){if(_ instanceof M&&g.length>0)_.stepResults=rH(g);throw _}let S=_;if(i?.({attempt:v,maxAttempts:5,delayMs:1e4,step:S.step,error:S.message}),await new Promise((D)=>setTimeout(D,1e4)),p=!0,c!==void 0)f=!0}throw y}function rH(e){let t=new Map;for(let r of e)t.set(r.step,r);return Array.from(t.values())}var fd=O(()=>{tH();Ps();yr()});function uH(e){oD=e}function aD(){return oD}function pd(e){if(oD)process.stderr.write(`${e}
106
106
  `)}var oD=!1;var lH={};Ti(lH,{runCommand:()=>F});var{spawn:W3e}=globalThis.Bun;async function F(e,t={}){let r={...process.env,GIT_TERMINAL_PROMPT:"0",...t.env};for(let l of t.unsetEnv??[])delete r[l];let n=W3e({cmd:e,cwd:t.cwd,stdout:"pipe",stderr:"pipe",env:r}),i=!1,s;if(t.timeout)s=setTimeout(()=>{i=!0,n.kill()},t.timeout);if(aD()){let l=t.cwd?` (cwd=${t.cwd})`:"";pd(u.dim(`$ ${e.join(" ")}${l}`))}let o=await new Response(n.stdout).text(),a=await new Response(n.stderr).text(),c=await n.exited;if(s)clearTimeout(s);if(aD()){if(o.trim())pd(u.dim(o.trimEnd()));if(a.trim())pd(u.yellow(a.trimEnd()));pd(u.dim(`(exit ${c})`))}if(i)return{stdout:o,stderr:a||`Command timed out after ${Math.round(t.timeout/1000)}s`,exitCode:c??1};return{stdout:o,stderr:a,exitCode:c}}var Lt=O(()=>{Ye()});async function K3e(){try{let{exitCode:e,stderr:t}=await F(["ssh","-T","-o","BatchMode=yes","-o","ConnectTimeout=5","git@github.com"]),r=t.includes("successfully authenticated");if(!r)console.warn("SSH test to github.com failed:",{exitCode:e,stderr:t.trim().slice(0,500)});return{works:r,error:r?void 0:t.trim().slice(0,500)}}catch(e){let t=e instanceof Error?e.message:String(e);return console.warn("SSH test exception:",t),{works:!1,error:t}}}async function md(){try{let{stdout:e,exitCode:t,stderr:r}=await F(["gh","auth","token"]);if(t!==0)return console.warn("gh CLI returned non-zero exit code:",t),console.warn("stderr:",r),{token:null,error:`gh auth token failed: ${r.trim()||"unknown error"}`};if(!e.trim())return console.warn("gh auth token returned empty output"),{token:null,error:"gh CLI returned empty token"};return{token:e.trim()}}catch(e){let t=e instanceof Error?e.message:String(e);if(console.error("Failed to get GitHub token from gh CLI:",t),t.includes("ENOENT")||t.includes("not found"))return{token:null,error:"gh CLI not installed (command not found)"};return{token:null,error:`gh CLI error: ${t}`}}}async function Cm(e){try{let{stdout:t,exitCode:r,stderr:n}=await F(["gh","api","user","--jq",".login"]);if(r!==0){if(n.includes("not logged in")||n.includes("auth login"))return{authenticated:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};return{authenticated:!1,error:`gh CLI error: ${n.trim()||"unknown error"}`}}let i=t.trim();if(!i)return{authenticated:!1,error:"gh CLI returned empty username"};if(e){let s=i.toLowerCase()===e.toLowerCase();return{authenticated:!0,username:i,matches:s,error:s?void 0:`gh CLI authenticated as '${i}', expected '${e}'`}}return{authenticated:!0,username:i}}catch(t){let r=t instanceof Error?t.message:String(t);if(r.includes("ENOENT")||r.includes("not found"))return{authenticated:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{authenticated:!1,error:`Failed to verify gh CLI: ${r}`}}}async function Fm(e){if(!/^[a-zA-Z0-9_.-]+\/[a-zA-Z0-9_.-]+$/.test(e))return{accepted:!1,error:`Invalid repository format: ${e}`};let{stdout:t,exitCode:r,stderr:n}=await F(["gh","api","/user/repository_invitations"]);if(r!==0){if(n.includes("not logged in")||n.includes("auth login"))return{accepted:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};if(n.includes("API rate limit")||n.includes("403"))return{accepted:!1,error:"GitHub API rate limit exceeded. Please try again in a few minutes."};if(n.includes("ENOENT")||n.includes("not found"))return{accepted:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{accepted:!1,error:`Failed to list invitations: ${n.trim()||"unknown error"}`}}let i=null;try{i=JSON.parse(t||"[]").find((l)=>l.repository.full_name===e)?.id??null}catch(a){let c=a instanceof Error?a.message:String(a);return console.error("Failed to parse GitHub invitations response:",c),console.error(" Raw response (first 500 chars):",(t||"").slice(0,500)),{accepted:!1,error:`Failed to parse GitHub API response: ${c}`}}if(!i){let{exitCode:a}=await F(["gh","api",`/repos/${e}`,"--silent"]);if(a===0)return{accepted:!0,alreadyCollaborator:!0};return{accepted:!1,error:`No pending invitation found for ${e}. You may need to accept it manually via GitHub.`}}let{exitCode:s,stderr:o}=await F(["gh","api","--method","PATCH",`/user/repository_invitations/${i}`]);if(s!==0)return{accepted:!1,error:`Failed to accept invitation: ${o.trim()||"unknown error"}`};return{accepted:!0}}async function ei(e,t,r="origin"){let n=t;if(process.env.GH_TOKEN&&t.startsWith("git@github.com:")){let i=process.env.GH_TOKEN.trim();if(!i||/\s/.test(i))return{success:!1,error:"GH_TOKEN environment variable is set but appears malformed (empty or contains whitespace)"};n=`https://github.com/${t.replace("git@github.com:","")}`,await F(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${i}'`],{cwd:e})}else if(t.startsWith("git@github.com:")){let i=t.replace("git@github.com:",""),s=await md();if(s.token)n=`https://github.com/${i}`,await F(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${s.token}'`],{cwd:e});else{let o=await K3e();if(o.works)n=t;else return{success:!1,error:`GitHub authentication not configured.
107
107
 
108
108
  gh CLI failed: ${s.error||"could not get token"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "nemar-cli",
3
- "version": "0.9.10-dev.2125",
3
+ "version": "0.9.10-dev.2126",
4
4
  "description": "CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",
5
5
  "type": "module",
6
6
  "main": "dist/index.js",