nemar-cli 0.9.10-dev.2080 → 0.9.10-dev.2084
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +7 -5
- package/package.json +1 -1
package/dist/index.js
CHANGED
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@@ -102,7 +102,7 @@ ${u.dim(`eta: ${e.eta}`)}`:"";process.stderr.write(`${t}
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${r} ${e.message}
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${n}${i}
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${t}
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`)}var LV=!1;var T_=k(()=>{Ke()});var VV;var UV=k(()=>{VV={name:"nemar-cli",version:"0.9.10-dev.2080",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",ajv:"^8.20.0","ajv-formats":"^3.0.1",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var Ao;var bm=k(()=>{UV();Ao=VV.version});function U(e){if(e instanceof Error)return e.message;return String(e)}var M,ko;var gr=k(()=>{M=class M extends Error{statusCode;details;step;constructor(e,t,r,n){super(t);this.statusCode=e;this.details=r;this.step=n;this.name="ApiError"}};ko=class ko extends M{mode;eta;constructor(e,t,r,n){super(503,t,n);this.mode=e;this.eta=r;this.name="MaintenanceError"}}});function zV(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(q_)return N_;return ht().apiUrl||N_}async function I(e,t={},r=!1,n){let i=`${zV()}${e}`,s={"Content-Type":"application/json","X-CLI-Version":Ao,...t.headers};if(r){let c=ht();if(!c.apiKey&&r===!0)throw new M(401,"Not authenticated. 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Please retry shortly.",l=typeof a.eta==="string"?a.eta:null,d=new ko(a.mode,c,l,a.details);throw xm(d),d}throw new M(o.status,a.error||a.message||"Request failed",a.details,typeof a.step==="string"?a.step:void 0)}if(n){let c=n.safeParse(a);if(!c.success)throw new M(o.status,`Response for ${e} did not match the expected NEMAR contract`,{issues:c.error.issues});return c.data}return a}var N_="https://nemar-api-dev.sccn-org.workers.dev",q_;var Ps=k(()=>{ks();T_();bm();gr();q_=N_.includes("workers.dev")});async function HV(e,t){let r=new URLSearchParams;if(e)r.set("status",e);if(t)r.set("role",t);let n=r.toString()?`?${r.toString()}`:"";return I(`/admin/users${n}`,{},!0)}async function GV(e){return I(`/admin/approve/${e}`,{method:"POST"},!0)}async function WV(e){return I(`/admin/approve/by-id/${e}`,{method:"POST"},!0)}async function KV(e){return I(`/admin/revoke/${e}`,{method:"POST"},!0)}async function YV(e,t){return I(`/admin/users/${e}/role`,{method:"POST",body:JSON.stringify({role:t})},!0)}async function j_(e,t){return I(`/admin/datasets/${e}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:t})},!0)}async function JV(e){return I(`/datasets/${e}/publish`,{method:"POST"},!0)}async function XV(e){return I(`/admin/datasets/${e}/ci`,{},!0)}async function Ri(e){return I(`/admin/datasets/${e}/ci`,{method:"POST"},!0)}async function M_(e){return I(`/admin/datasets/${e}/ci/validate`,{method:"POST"},!0)}async function B_(e){return I(`/admin/datasets/${e}/ci/sync`,{method:"POST"},!0)}async function QV(e,t){return I(`/admin/datasets/${e}/doi/concept`,{method:"POST",body:JSON.stringify(t)},!0)}async function dd(e){return I(`/admin/datasets/${e}/doi`,{},!0)}async function L_(e,t){return I(`/admin/datasets/${e}/doi/update`,{method:"POST",body:JSON.stringify(t)},!0)}async function ZV(e,t){return I(`/admin/datasets/${e}/withdraw`,{method:"POST",body:JSON.stringify({reason:t.reason,dry_run:t.dryRun})},!0)}async function ez(e,t){return I(`/admin/datasets/${e}/restore`,{method:"POST",body:JSON.stringify({dry_run:t.dryRun})},!0)}async function tz(e){return I(`/admin/datasets/${e}/reset`,{method:"POST"},!0)}async function rz(e,t=!1){return I(`/admin/datasets/${e}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:t})},!0)}async function nz(e){return I("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function iz(e){return I("/admin/datasets/import",{method:"POST",body:JSON.stringify(e)},!0)}async function sz(e){return I("/admin/datasets/exemplar",{method:"POST",body:JSON.stringify(e)},!0)}async function oz(e){return I(`/admin/datasets/${e}/exemplar/remint-dois`,{method:"POST"},!0)}async function U_(e,t){let r=new URLSearchParams;if(e)r.set("status",e);if(t!==void 0)r.set("blocklisted",t?"1":"0");let n=r.toString();return I(`/admin/imports${n?`?${n}`:""}`,{},!0)}async function az(e){return I(`/admin/imports/${e}/rollback`,{method:"POST"},!0)}async function cz(e){return I(`/admin/imports/${e}/retry`,{method:"POST"},!0)}async function V_(e){return I(`/admin/imports/${e}/verify`,{method:"POST"},!0)}async function uz(e){return I("/admin/imports/dispatch-cooldown",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function Oc(e,t){return I(`/admin/datasets/${e}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(t??{})},!0)}async function lz(e,t){return I("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:e,...t??{}})},!0)}async function dz(e){let t=e?.limit??15;return I(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function fz(){return I("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function pz(e){let t=e?.limit??15,r=new URLSearchParams({limit:String(t)});if(e?.olderThan!=null)r.set("older-than",String(e.olderThan));if(e?.before!=null)r.set("before",e.before);return I(`/admin/datasets/data-integrity-sweep?${r.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function mz(){return I("/admin/datasets/data-integrity-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function hz(e,t){let r=t?.write?"":"?dry_run=1";return I(`/admin/datasets/${e}/availability-report${r}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function gz(e){let t=e?.limit??30,r=new URLSearchParams({limit:String(t)});if(e?.missingOnly)r.set("missing-only","1");return I(`/admin/datasets/availability-report-sweep?${r.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function yz(){return I("/admin/datasets/availability-report-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function xz(e){let t=new URLSearchParams;if(e?.prefix)t.set("prefix",e.prefix);if(e?.visibility)t.set("visibility",e.visibility);if(e?.limit)t.set("limit",String(e.limit));let r=t.toString()?`?${t.toString()}`:"";return I(`/admin/fleet/drift${r}`,{},!0)}async function Ac(e,t){return I(`/admin/datasets/${e}/enforce`,{method:"POST",body:JSON.stringify({dry_run:t})},!0)}async function bz(e){return I("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:e.prefix,visibility:e.visibility,limit:e.limit,dry_run:e.dryRun})},!0)}async function vz(e,t=!1){return I(`/admin/datasets/${e}/revalidate${t?"?force=true":""}`,{method:"POST"},!0)}async function _z(e){let t=e?`?user=${encodeURIComponent(e)}`:"";return I(`/admin/email-preferences${t}`,{},!0)}async function Dz(e,t){let r=t?`?user=${encodeURIComponent(t)}`:"";return I(`/admin/email-preferences${r}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(e)},!0)}async function z_(e){return I("/admin/notify",{method:"POST",body:JSON.stringify(e)},!0)}async function wz(){return I("/admin/summary/coverage",{},!0)}async function Ez(e,t,r){return I("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:e,version:t,skip_canary:r?.skipCanary??!1})},!0)}async function H_(e){return I("/admin/doctor/scan",{method:"POST",body:JSON.stringify({...e?.check&&{check:e.check},...e?.datasetId&&{dataset_id:e.datasetId}})},!0)}async function G_(e){return I("/admin/doctor/fix",{method:"POST",body:JSON.stringify({check:e.check,...e.datasetId&&{dataset_id:e.datasetId},...e.dryRun&&{dry_run:!0}})},!0)}var kc=k(()=>{Ps()});async function Zn(e,t){return I(`/datasets/${e}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function W_(e,t){return I(`/datasets/${e}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function Sz(e){return I(`/admin/datasets/${e}/files`,{},!0)}async function $z(e){let t,r=0,n=[],i=!0;while(i){let s=await I(`/admin/datasets/${e}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:t})},!0);if(r+=s.locked,s.failed?.length)n.push(...s.failed);if(i=s.hasMore,t=s.continuation_token,i&&!t)throw new M(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:r,failed:n}}var Pc=k(()=>{Ps();gr()});async function _m(e){return I(`/datasets/${e}/ci/status`,{},!0)}async function Cz(e){return I(`/datasets/${e}/manifest`,{},!0)}async function Dm(e,t){return I(`/datasets/${e}/manifest/${t}`,{},!0)}function Fz(e){let t=e;if(!t.status)t.status="active";else if(!["active","archived","deleted"].includes(t.status))throw Error(`Invalid dataset status: ${t.status}`);if(!t.visibility)t.visibility="private";else if(!["public","private"].includes(t.visibility))throw Error(`Invalid dataset visibility: ${t.visibility}`);return t}async function Ic(e={}){let t=new URLSearchParams;if(e.mine)t.set("mine","true");if(e.search)t.set("search",e.search);if(e.modality)t.set("modality",e.modality);if(e.author)t.set("author",e.author);if(e.task)t.set("task",e.task);if(e.license)t.set("license",e.license);if(e.hasDoi)t.set("has_doi","true");if(e.hasHed)t.set("has_hed","1");if(e.dataComplete)t.set("data_complete","1");if(e.recent)t.set("recent",String(e.recent));if(e.sort)t.set("sort",e.sort);if(e.limit!=null)t.set("limit",String(e.limit));if(e.offset!=null)t.set("offset",String(e.offset));if(e.owner)t.set("owner",e.owner);let r=t.toString()?`?${t.toString()}`:"",n=await I(`/datasets${r}`,{},e.mine?!0:"optional");return n.datasets=n.datasets.map(Fz),n}async function Rz(e){return I(`/datasets/resolve/${e}`,{},"optional")}async function Oz(e,t={}){let r=new URLSearchParams({q:e});if(t.modality)r.set("modality",t.modality);if(t.limit)r.set("limit",String(t.limit));if(t.hasHed)r.set("has_hed","1");return I(`/datasets/search?${r.toString()}`,{},"optional")}async function gt(e){let t=await I(`/datasets/${e}`,{},"optional");return Fz(t.dataset)}async function Az(e){return I(`/datasets/${e}/versions`,{},!0)}async function wm(e){return I("/datasets",{method:"POST",body:JSON.stringify(e)},!0)}async function Em(e){return I(`/datasets/${e}/finalize`,{method:"POST"},!0)}async function K_(e){return I(`/datasets/${e}/request-access`,{method:"POST"},!0)}async function kz(e,t){let r=t?`?status=${t}`:"";return I(`/datasets/${e}/access-requests${r}`,{},!0)}async function Pz(e,t){return I(`/datasets/${e}/access-requests/${t}/approve`,{method:"POST"},!0)}async function Iz(e,t){return I(`/datasets/${e}/access-requests/${t}/deny`,{method:"POST"},!0)}async function Tz(e,t){return I(`/datasets/${e}/invite`,{method:"POST",body:JSON.stringify({username:t})},!0)}async function Nz(e){return I(`/datasets/${e}/collaborators`,{},!0)}async function qz(e,t){return I(`/admin/datasets/${e}/enrichment`,{method:"POST",body:JSON.stringify(t)},!0)}var vm;var Po=k(()=>{Ps();vm=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var Tc;var Uz=k(()=>{Tc=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function Nc(e){return I(`/datasets/${e}/publish/request`,{method:"POST"},!0)}async function zz(e){return I(`/datasets/${e}/publish/status`,{},!0)}async function Hz(e){return I(`/datasets/${e}/publish/resend`,{method:"POST"},!0)}async function Gz(e){let t=e?`?status=${e}`:"";return I(`/admin/publish/requests${t}`,{},!0)}async function Wz(e,t){return I(`/admin/publish/${e}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:t})},!0)}function A3e(e,t=[]){if(e){let r=Tc.indexOf(e);if(r>=0)return r+1}return Math.min(t.length+1,Tc.length)}function k3e(e){if(!(e instanceof M))return!1;if(e.statusCode===0)return!0;if(e.statusCode===429)return!0;if(e.statusCode>=500&&e.statusCode<600)return!0;if(e.statusCode===403&&/repository has been locked/i.test(e.message))return!0;return!1}async function qc(e,t=!1,r=!1,n=!1,i,s){let c,l,d=0,f=!1,m,p=t,g=[],y;function x(v,_,E,S){if(!s)return;s({step:v,stepIndex:A3e(v,_),stepTotal:Tc.length,s3LockLocked:E,s3LockTotal:S,s3LockResumed:v==="s3_lock"&&f?!0:void 0})}for(let v=1;v<=5;v++)try{let _,E=!0;do{if(_=await I(`/admin/publish/${e}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:E?p:!0,sandbox:r,s3_lock_continuation_token:c,s3_lock_total:l,skip_ci_check:n})},!0),E=!1,_.step_results)g.push(..._.step_results);if(_.s3_lock_total!==void 0)l=_.s3_lock_total;if(_.s3_lock_batch_count!==void 0)d+=_.s3_lock_batch_count;let S=_.step??_.step_results?.[_.step_results.length-1]?.step;if(S&&(S!==m||S==="s3_lock"))x(S,_.steps_completed??[],S==="s3_lock"?d:void 0,S==="s3_lock"?l:void 0),m=S;if(_.hasMore&&_.s3_lock_continuation_token!==void 0)c=_.s3_lock_continuation_token;else break}while(_.hasMore);if(g.length>0)_.step_results=Vz(g);return _}catch(_){if(y=_,v===5||!k3e(_)){if(_ instanceof M&&g.length>0)_.stepResults=Vz(g);throw _}let S=_;if(i?.({attempt:v,maxAttempts:5,delayMs:1e4,step:S.step,error:S.message}),await new Promise((D)=>setTimeout(D,1e4)),p=!0,c!==void 0)f=!0}throw y}function Vz(e){let t=new Map;for(let r of e)t.set(r.step,r);return Array.from(t.values())}var fd=k(()=>{Uz();Ps();gr()});function Jz(e){X_=e}function Q_(){return X_}function pd(e){if(X_)process.stderr.write(`${e}
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`)}var X_=!1;var Xz={};Ti(Xz,{runCommand:()=>F});var{spawn:P3e}=globalThis.Bun;async function F(e,t={}){let r={...process.env,GIT_TERMINAL_PROMPT:"0",...t.env};for(let l of t.unsetEnv??[])delete r[l];let n=P3e({cmd:e,cwd:t.cwd,stdout:"pipe",stderr:"pipe",env:r}),i=!1,s;if(t.timeout)s=setTimeout(()=>{i=!0,n.kill()},t.timeout);if(Q_()){let l=t.cwd?` (cwd=${t.cwd})`:"";pd(u.dim(`$ ${e.join(" ")}${l}`))}let o=await new Response(n.stdout).text(),a=await new Response(n.stderr).text(),c=await n.exited;if(s)clearTimeout(s);if(Q_()){if(o.trim())pd(u.dim(o.trimEnd()));if(a.trim())pd(u.yellow(a.trimEnd()));pd(u.dim(`(exit ${c})`))}if(i)return{stdout:o,stderr:a||`Command timed out after ${Math.round(t.timeout/1000)}s`,exitCode:c??1};return{stdout:o,stderr:a,exitCode:c}}var Bt=k(()=>{Ke()});async function I3e(){try{let{exitCode:e,stderr:t}=await F(["ssh","-T","-o","BatchMode=yes","-o","ConnectTimeout=5","git@github.com"]),r=t.includes("successfully authenticated");if(!r)console.warn("SSH test to github.com failed:",{exitCode:e,stderr:t.trim().slice(0,500)});return{works:r,error:r?void 0:t.trim().slice(0,500)}}catch(e){let t=e instanceof Error?e.message:String(e);return console.warn("SSH test exception:",t),{works:!1,error:t}}}async function md(){try{let{stdout:e,exitCode:t,stderr:r}=await F(["gh","auth","token"]);if(t!==0)return console.warn("gh CLI returned non-zero exit code:",t),console.warn("stderr:",r),{token:null,error:`gh auth token failed: ${r.trim()||"unknown error"}`};if(!e.trim())return console.warn("gh auth token returned empty output"),{token:null,error:"gh CLI returned empty token"};return{token:e.trim()}}catch(e){let t=e instanceof Error?e.message:String(e);if(console.error("Failed to get GitHub token from gh CLI:",t),t.includes("ENOENT")||t.includes("not found"))return{token:null,error:"gh CLI not installed (command not found)"};return{token:null,error:`gh CLI error: ${t}`}}}async function Sm(e){try{let{stdout:t,exitCode:r,stderr:n}=await F(["gh","api","user","--jq",".login"]);if(r!==0){if(n.includes("not logged in")||n.includes("auth login"))return{authenticated:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};return{authenticated:!1,error:`gh CLI error: ${n.trim()||"unknown error"}`}}let i=t.trim();if(!i)return{authenticated:!1,error:"gh CLI returned empty username"};if(e){let s=i.toLowerCase()===e.toLowerCase();return{authenticated:!0,username:i,matches:s,error:s?void 0:`gh CLI authenticated as '${i}', expected '${e}'`}}return{authenticated:!0,username:i}}catch(t){let r=t instanceof Error?t.message:String(t);if(r.includes("ENOENT")||r.includes("not found"))return{authenticated:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{authenticated:!1,error:`Failed to verify gh CLI: ${r}`}}}async function $m(e){if(!/^[a-zA-Z0-9_.-]+\/[a-zA-Z0-9_.-]+$/.test(e))return{accepted:!1,error:`Invalid repository format: ${e}`};let{stdout:t,exitCode:r,stderr:n}=await F(["gh","api","/user/repository_invitations"]);if(r!==0){if(n.includes("not logged in")||n.includes("auth login"))return{accepted:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};if(n.includes("API rate limit")||n.includes("403"))return{accepted:!1,error:"GitHub API rate limit exceeded. Please try again in a few minutes."};if(n.includes("ENOENT")||n.includes("not found"))return{accepted:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{accepted:!1,error:`Failed to list invitations: ${n.trim()||"unknown error"}`}}let i=null;try{i=JSON.parse(t||"[]").find((l)=>l.repository.full_name===e)?.id??null}catch(a){let c=a instanceof Error?a.message:String(a);return console.error("Failed to parse GitHub invitations response:",c),console.error(" Raw response (first 500 chars):",(t||"").slice(0,500)),{accepted:!1,error:`Failed to parse GitHub API response: ${c}`}}if(!i){let{exitCode:a}=await F(["gh","api",`/repos/${e}`,"--silent"]);if(a===0)return{accepted:!0,alreadyCollaborator:!0};return{accepted:!1,error:`No pending invitation found for ${e}. You may need to accept it manually via GitHub.`}}let{exitCode:s,stderr:o}=await F(["gh","api","--method","PATCH",`/user/repository_invitations/${i}`]);if(s!==0)return{accepted:!1,error:`Failed to accept invitation: ${o.trim()||"unknown error"}`};return{accepted:!0}}async function ei(e,t,r="origin"){let n=t;if(process.env.GH_TOKEN&&t.startsWith("git@github.com:")){let i=process.env.GH_TOKEN.trim();if(!i||/\s/.test(i))return{success:!1,error:"GH_TOKEN environment variable is set but appears malformed (empty or contains whitespace)"};n=`https://github.com/${t.replace("git@github.com:","")}`,await F(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${i}'`],{cwd:e})}else if(t.startsWith("git@github.com:")){let i=t.replace("git@github.com:",""),s=await md();if(s.token)n=`https://github.com/${i}`,await F(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${s.token}'`],{cwd:e});else{let o=await I3e();if(o.works)n=t;else return{success:!1,error:`GitHub authentication not configured.
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107
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108
108
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gh CLI failed: ${s.error||"could not get token"}
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@@ -783,11 +783,13 @@ Bumps ${n} from ${m} to ${y}.
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783
783
|
- ... and ${a.length-10} more`:""}`,ot=kt({cmd:["gh","pr","create","--repo",f.github_repo,"--head",_,"--base","main","--title",T,"--body",Me],cwd:r,stdout:"pipe",stderr:"pipe"}),tr=(await new Response(ot.stdout).text()).trim();if(await ot.exited!==0){let yt=await new Response(ot.stderr).text();throw Error(yt.trim()||"gh pr create failed")}Ne=!0,je.succeed("Created pull request"),console.log(),console.log(` ${u.cyan("PR:")} ${tr}`)}catch(T){je.fail("Failed to create PR");let H=T instanceof Error?T.message:String(T);console.log(u.red(` ${H}`)),console.log(u.dim(` Branch ${_} has been pushed. Create the PR manually.`))}if(t.monitor&&Ne){console.log(),console.log(u.dim("Monitoring CI checks..."));let T=0,H=60;while(T<H){await new Promise((yt)=>setTimeout(yt,1e4)),T++;let Me=kt({cmd:["gh","pr","checks","--repo",f.github_repo,_],cwd:r,stdout:"pipe",stderr:"pipe"}),ot=await new Response(Me.stdout).text();if(await Me.exited===0){if(console.log(u.green(" All checks passed!")),await Fe("Merge the PR?",{yes:t.yes})==="confirmed"){let sw=kt({cmd:["gh","pr","merge","--repo",f.github_repo,_,"--squash","--delete-branch"],cwd:r,stdout:"pipe",stderr:"pipe"});if(await sw.exited===0)console.log(u.green(" PR merged successfully!"));else{let eY=await new Response(sw.stderr).text();console.log(u.red(` Merge failed: ${eY.trim()}`))}}break}if(ot.includes("fail")||ot.includes("X")){console.log(u.red(" Some checks failed:")),console.log(ot);break}process.stdout.write(u.dim("."))}if(T>=H)console.log(u.yellow(`
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Timed out waiting for checks.`))}});lt.command("request-access").description("Request collaborator access to a dataset").argument("<dataset-id>","Dataset ID (e.g., nm000104)").addHelpText("after",`
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785
785
|
Description:
|
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786
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-
Request access to a NEMAR dataset
|
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787
|
-
|
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786
|
+
Request collaborator access to a private NEMAR dataset. The owner is
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787
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+
notified and can approve or deny; once approved you can push data via
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788
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+
git-annex.
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788
789
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789
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-
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790
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-
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790
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+
Public datasets grant no access here, because the repository is already
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791
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+
open. Fork it and submit a pull request, or ask the owner for an invite
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792
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+
if you need merge rights.
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791
793
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792
794
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Requirements:
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793
795
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- NEMAR account (nemar auth login)
|
package/package.json
CHANGED