nemar-cli 0.8.76-dev.1759 → 0.9.0-dev.1761

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2) hide show
  1. package/dist/index.js +1 -1
  2. package/package.json +1 -1
package/dist/index.js CHANGED
@@ -102,7 +102,7 @@ ${H.dim(`eta: ${D.eta}`)}`:"";process.stderr.write(`${F}
102
102
  ${$} ${D.message}
103
103
  ${Q}${J}
104
104
  ${F}
105
- `)}var Ap=!1;var Oz=P(()=>{t0()});var Cp;var Np=P(()=>{Cp={name:"nemar-cli",version:"0.8.76-dev.1759",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",ajv:"^8.20.0","ajv-formats":"^3.0.1",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var j3;var WX=P(()=>{Np();j3=Cp.version});function $0(D){if(D instanceof Error)return D.message;return String(D)}var f,T3;var K1=P(()=>{f=class f extends Error{statusCode;details;step;constructor(D,F,$,Q){super(F);this.statusCode=D;this.details=$;this.step=Q;this.name="ApiError"}};T3=class T3 extends f{mode;eta;constructor(D,F,$,Q){super(503,F,Q);this.mode=D;this.eta=$;this.name="MaintenanceError"}}});function Rp(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(Tz)return jz;return KD().apiUrl||jz}async function _(D,F={},$=!1,Q){let J=`${Rp()}${D}`,Y={"Content-Type":"application/json","X-CLI-Version":j3,...F.headers};if($){let G=KD();if(!G.apiKey&&$===!0)throw new f(401,"Not authenticated. Run 'nemar auth login' first.");if(G.apiKey)Y.Authorization=`Bearer ${G.apiKey}`}let X;try{X=await fetch(J,{...F,headers:Y})}catch(G){throw new f(0,`Network error: Could not connect to ${Rp()}`,{originalError:G instanceof Error?G.message:String(G)})}let B;try{B=await X.json()}catch{throw new f(X.status,`Invalid response from server (status ${X.status})`)}if(!X.ok){if(X.status===503&&(B.mode==="read-only"||B.mode==="full")){let G=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",W=typeof B.eta==="string"?B.eta:null,q=new T3(B.mode,G,W,B.details);throw GX(q),q}throw new f(X.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}if(Q){let G=Q.safeParse(B);if(!G.success)throw new f(X.status,`Response for ${D} did not match the expected NEMAR contract`,{issues:G.error.issues});return G.data}return B}var jz="https://nemar-api-dev.sccn-org.workers.dev",Tz;var I4=P(()=>{P4();Oz();WX();K1();Tz=jz.includes("workers.dev")});async function Op(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let Q=$.toString()?`?${$.toString()}`:"";return _(`/admin/users${Q}`,{},!0)}async function jp(D){return _(`/admin/approve/${D}`,{method:"POST"},!0)}async function Tp(D){return _(`/admin/revoke/${D}`,{method:"POST"},!0)}async function wp(D,F){return _(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function wz(D,F){return _(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function Pp(D){return _(`/datasets/${D}/publish`,{method:"POST"},!0)}async function Ip(D){return _(`/admin/datasets/${D}/ci`,{},!0)}async function j6(D){return _(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function Pz(D){return _(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function Iz(D){return _(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function Sp(D,F){return _(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function X$(D){return _(`/admin/datasets/${D}/doi`,{},!0)}async function Sz(D,F){return _(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function kp(D){return _(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function vp(D,F=!1){return _(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function yp(D){return _("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function xp(D){return _("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function _p(D){return _("/admin/datasets/exemplar",{method:"POST",body:JSON.stringify(D)},!0)}async function fp(D){return _(`/admin/datasets/${D}/exemplar/remint-dois`,{method:"POST"},!0)}async function bp(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return _(`/admin/imports${F}`,{},!0)}async function gp(D){return _(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function hp(D){return _(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function T5(D,F){return _(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function up(D,F){return _("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function mp(D){let F=D?.limit??15;return _(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(F))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function lp(){return _("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function pp(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return _(`/admin/fleet/drift${$}`,{},!0)}async function w5(D,F){return _(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function dp(D){return _("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function cp(D,F=!1){return _(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function np(D){let F=D?`?user=${encodeURIComponent(D)}`:"";return _(`/admin/email-preferences${F}`,{},!0)}async function ip(D,F){let $=F?`?user=${encodeURIComponent(F)}`:"";return _(`/admin/email-preferences${$}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function kz(D){return _("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function ap(){return _("/admin/summary/coverage",{},!0)}async function op(D,F,$){return _("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var P5=P(()=>{I4()});async function o8(D,F){return _(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function vz(D,F){return _(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function sp(D){return _(`/admin/datasets/${D}/files`,{},!0)}async function rp(D){let F,$=0,Q=[],J=!0;while(J){let Y=await _(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)Q.push(...Y.failed);if(J=Y.hasMore,F=Y.continuation_token,J&&!F)throw new f(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:Q}}var I5=P(()=>{I4();K1()});async function qX(D){return _(`/datasets/${D}/ci/status`,{},!0)}async function tp(D){return _(`/datasets/${D}/manifest`,{},!0)}async function KX(D,F){return _(`/datasets/${D}/manifest/${F}`,{},!0)}function ep(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function S5(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.hasHed)F.set("has_hed","1");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",Q=await _(`/datasets${$}`,{},D.mine?!0:"optional");return Q.datasets=Q.datasets.map(ep),Q}async function Dd(D){return _(`/datasets/resolve/${D}`,{},"optional")}async function Fd(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));if(F.hasHed)$.set("has_hed","1");return _(`/datasets/search?${$.toString()}`,{},"optional")}async function ID(D){let F=await _(`/datasets/${D}`,{},"optional");return ep(F.dataset)}async function $d(D){return _(`/datasets/${D}/versions`,{},!0)}async function zX(D){return _("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function ZX(D){return _(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function yz(D){return _(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function Qd(D,F){let $=F?`?status=${F}`:"";return _(`/datasets/${D}/access-requests${$}`,{},!0)}async function Jd(D,F){return _(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Yd(D,F){return _(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Xd(D,F){return _(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Bd(D){return _(`/datasets/${D}/collaborators`,{},!0)}async function Gd(D,F){return _(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}var HX;var w3=P(()=>{I4();HX=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var k5;var zd=P(()=>{k5=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function v5(D){return _(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function Vd(D){return _(`/datasets/${D}/publish/status`,{},!0)}async function Ed(D){return _(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Ud(D){let F=D?`?status=${D}`:"";return _(`/admin/publish/requests${F}`,{},!0)}async function Ld(D,F){return _(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function yI0(D,F=[]){if(D){let $=k5.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,k5.length)}function xI0(D){if(!(D instanceof f))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function y5(D,F=!1,$=!1,Q=!1,J,Y){let G,W,q=0,K=!1,Z,z=F,E=[],U;function M(A,N,O,T){if(!Y)return;Y({step:A,stepIndex:yI0(A,N),stepTotal:k5.length,s3LockLocked:O,s3LockTotal:T,s3LockResumed:A==="s3_lock"&&K?!0:void 0})}for(let A=1;A<=5;A++)try{let N,O=!0;do{if(N=await _(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:O?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:W,skip_ci_check:Q})},!0),O=!1,N.step_results)E.push(...N.step_results);if(N.s3_lock_total!==void 0)W=N.s3_lock_total;if(N.s3_lock_batch_count!==void 0)q+=N.s3_lock_batch_count;let T=N.step??N.step_results?.[N.step_results.length-1]?.step;if(T&&(T!==Z||T==="s3_lock"))M(T,N.steps_completed??[],T==="s3_lock"?q:void 0,T==="s3_lock"?W:void 0),Z=T;if(N.hasMore&&N.s3_lock_continuation_token!==void 0)G=N.s3_lock_continuation_token;else break}while(N.hasMore);if(E.length>0)N.step_results=Zd(E);return N}catch(N){if(U=N,A===5||!xI0(N)){if(N instanceof f&&E.length>0)N.stepResults=Zd(E);throw N}let T=N;if(J?.({attempt:A,maxAttempts:5,delayMs:1e4,step:T.step,error:T.message}),await new Promise((C)=>setTimeout(C,1e4)),z=!0,G!==void 0)K=!0}throw U}function Zd(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}var B$=P(()=>{zd();I4();K1()});function Nd(D){_z=D}function fz(){return _z}function G$(D){if(_z)process.stderr.write(`${D}
105
+ `)}var Ap=!1;var Oz=P(()=>{t0()});var Cp;var Np=P(()=>{Cp={name:"nemar-cli",version:"0.9.0-dev.1761",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",ajv:"^8.20.0","ajv-formats":"^3.0.1",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var j3;var WX=P(()=>{Np();j3=Cp.version});function $0(D){if(D instanceof Error)return D.message;return String(D)}var f,T3;var K1=P(()=>{f=class f extends Error{statusCode;details;step;constructor(D,F,$,Q){super(F);this.statusCode=D;this.details=$;this.step=Q;this.name="ApiError"}};T3=class T3 extends f{mode;eta;constructor(D,F,$,Q){super(503,F,Q);this.mode=D;this.eta=$;this.name="MaintenanceError"}}});function Rp(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(Tz)return jz;return KD().apiUrl||jz}async function _(D,F={},$=!1,Q){let J=`${Rp()}${D}`,Y={"Content-Type":"application/json","X-CLI-Version":j3,...F.headers};if($){let G=KD();if(!G.apiKey&&$===!0)throw new f(401,"Not authenticated. Run 'nemar auth login' first.");if(G.apiKey)Y.Authorization=`Bearer ${G.apiKey}`}let X;try{X=await fetch(J,{...F,headers:Y})}catch(G){throw new f(0,`Network error: Could not connect to ${Rp()}`,{originalError:G instanceof Error?G.message:String(G)})}let B;try{B=await X.json()}catch{throw new f(X.status,`Invalid response from server (status ${X.status})`)}if(!X.ok){if(X.status===503&&(B.mode==="read-only"||B.mode==="full")){let G=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",W=typeof B.eta==="string"?B.eta:null,q=new T3(B.mode,G,W,B.details);throw GX(q),q}throw new f(X.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}if(Q){let G=Q.safeParse(B);if(!G.success)throw new f(X.status,`Response for ${D} did not match the expected NEMAR contract`,{issues:G.error.issues});return G.data}return B}var jz="https://nemar-api-dev.sccn-org.workers.dev",Tz;var I4=P(()=>{P4();Oz();WX();K1();Tz=jz.includes("workers.dev")});async function Op(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let Q=$.toString()?`?${$.toString()}`:"";return _(`/admin/users${Q}`,{},!0)}async function jp(D){return _(`/admin/approve/${D}`,{method:"POST"},!0)}async function Tp(D){return _(`/admin/revoke/${D}`,{method:"POST"},!0)}async function wp(D,F){return _(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function wz(D,F){return _(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function Pp(D){return _(`/datasets/${D}/publish`,{method:"POST"},!0)}async function Ip(D){return _(`/admin/datasets/${D}/ci`,{},!0)}async function j6(D){return _(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function Pz(D){return _(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function Iz(D){return _(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function Sp(D,F){return _(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function X$(D){return _(`/admin/datasets/${D}/doi`,{},!0)}async function Sz(D,F){return _(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function kp(D){return _(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function vp(D,F=!1){return _(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function yp(D){return _("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function xp(D){return _("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function _p(D){return _("/admin/datasets/exemplar",{method:"POST",body:JSON.stringify(D)},!0)}async function fp(D){return _(`/admin/datasets/${D}/exemplar/remint-dois`,{method:"POST"},!0)}async function bp(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return _(`/admin/imports${F}`,{},!0)}async function gp(D){return _(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function hp(D){return _(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function T5(D,F){return _(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function up(D,F){return _("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function mp(D){let F=D?.limit??15;return _(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(F))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function lp(){return _("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function pp(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return _(`/admin/fleet/drift${$}`,{},!0)}async function w5(D,F){return _(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function dp(D){return _("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function cp(D,F=!1){return _(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function np(D){let F=D?`?user=${encodeURIComponent(D)}`:"";return _(`/admin/email-preferences${F}`,{},!0)}async function ip(D,F){let $=F?`?user=${encodeURIComponent(F)}`:"";return _(`/admin/email-preferences${$}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function kz(D){return _("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function ap(){return _("/admin/summary/coverage",{},!0)}async function op(D,F,$){return _("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var P5=P(()=>{I4()});async function o8(D,F){return _(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function vz(D,F){return _(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function sp(D){return _(`/admin/datasets/${D}/files`,{},!0)}async function rp(D){let F,$=0,Q=[],J=!0;while(J){let Y=await _(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)Q.push(...Y.failed);if(J=Y.hasMore,F=Y.continuation_token,J&&!F)throw new f(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:Q}}var I5=P(()=>{I4();K1()});async function qX(D){return _(`/datasets/${D}/ci/status`,{},!0)}async function tp(D){return _(`/datasets/${D}/manifest`,{},!0)}async function KX(D,F){return _(`/datasets/${D}/manifest/${F}`,{},!0)}function ep(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function S5(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.hasHed)F.set("has_hed","1");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",Q=await _(`/datasets${$}`,{},D.mine?!0:"optional");return Q.datasets=Q.datasets.map(ep),Q}async function Dd(D){return _(`/datasets/resolve/${D}`,{},"optional")}async function Fd(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));if(F.hasHed)$.set("has_hed","1");return _(`/datasets/search?${$.toString()}`,{},"optional")}async function ID(D){let F=await _(`/datasets/${D}`,{},"optional");return ep(F.dataset)}async function $d(D){return _(`/datasets/${D}/versions`,{},!0)}async function zX(D){return _("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function ZX(D){return _(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function yz(D){return _(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function Qd(D,F){let $=F?`?status=${F}`:"";return _(`/datasets/${D}/access-requests${$}`,{},!0)}async function Jd(D,F){return _(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Yd(D,F){return _(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Xd(D,F){return _(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Bd(D){return _(`/datasets/${D}/collaborators`,{},!0)}async function Gd(D,F){return _(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}var HX;var w3=P(()=>{I4();HX=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var k5;var zd=P(()=>{k5=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function v5(D){return _(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function Vd(D){return _(`/datasets/${D}/publish/status`,{},!0)}async function Ed(D){return _(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Ud(D){let F=D?`?status=${D}`:"";return _(`/admin/publish/requests${F}`,{},!0)}async function Ld(D,F){return _(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function yI0(D,F=[]){if(D){let $=k5.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,k5.length)}function xI0(D){if(!(D instanceof f))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function y5(D,F=!1,$=!1,Q=!1,J,Y){let G,W,q=0,K=!1,Z,z=F,E=[],U;function M(A,N,O,T){if(!Y)return;Y({step:A,stepIndex:yI0(A,N),stepTotal:k5.length,s3LockLocked:O,s3LockTotal:T,s3LockResumed:A==="s3_lock"&&K?!0:void 0})}for(let A=1;A<=5;A++)try{let N,O=!0;do{if(N=await _(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:O?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:W,skip_ci_check:Q})},!0),O=!1,N.step_results)E.push(...N.step_results);if(N.s3_lock_total!==void 0)W=N.s3_lock_total;if(N.s3_lock_batch_count!==void 0)q+=N.s3_lock_batch_count;let T=N.step??N.step_results?.[N.step_results.length-1]?.step;if(T&&(T!==Z||T==="s3_lock"))M(T,N.steps_completed??[],T==="s3_lock"?q:void 0,T==="s3_lock"?W:void 0),Z=T;if(N.hasMore&&N.s3_lock_continuation_token!==void 0)G=N.s3_lock_continuation_token;else break}while(N.hasMore);if(E.length>0)N.step_results=Zd(E);return N}catch(N){if(U=N,A===5||!xI0(N)){if(N instanceof f&&E.length>0)N.stepResults=Zd(E);throw N}let T=N;if(J?.({attempt:A,maxAttempts:5,delayMs:1e4,step:T.step,error:T.message}),await new Promise((C)=>setTimeout(C,1e4)),z=!0,G!==void 0)K=!0}throw U}function Zd(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}var B$=P(()=>{zd();I4();K1()});function Nd(D){_z=D}function fz(){return _z}function G$(D){if(_z)process.stderr.write(`${D}
106
106
  `)}var _z=!1;var Cd={};k6(Cd,{runCommand:()=>w});var{spawn:_I0}=globalThis.Bun;async function w(D,F={}){let $={...process.env,GIT_TERMINAL_PROMPT:"0",...F.env};for(let W of F.unsetEnv??[])delete $[W];let Q=_I0({cmd:D,cwd:F.cwd,stdout:"pipe",stderr:"pipe",env:$}),J=!1,Y;if(F.timeout)Y=setTimeout(()=>{J=!0,Q.kill()},F.timeout);if(fz()){let W=F.cwd?` (cwd=${F.cwd})`:"";G$(H.dim(`$ ${D.join(" ")}${W}`))}let X=await new Response(Q.stdout).text(),B=await new Response(Q.stderr).text(),G=await Q.exited;if(Y)clearTimeout(Y);if(fz()){if(X.trim())G$(H.dim(X.trimEnd()));if(B.trim())G$(H.yellow(B.trimEnd()));G$(H.dim(`(exit ${G})`))}if(J)return{stdout:X,stderr:B||`Command timed out after ${Math.round(F.timeout/1000)}s`,exitCode:G??1};return{stdout:X,stderr:B,exitCode:G}}var z1=P(()=>{t0()});async function fI0(){try{let{exitCode:D,stderr:F}=await w(["ssh","-T","-o","BatchMode=yes","-o","ConnectTimeout=5","git@github.com"]),$=F.includes("successfully authenticated");if(!$)console.warn("SSH test to github.com failed:",{exitCode:D,stderr:F.trim().slice(0,500)});return{works:$,error:$?void 0:F.trim().slice(0,500)}}catch(D){let F=D instanceof Error?D.message:String(D);return console.warn("SSH test exception:",F),{works:!1,error:F}}}async function W$(){try{let{stdout:D,exitCode:F,stderr:$}=await w(["gh","auth","token"]);if(F!==0)return console.warn("gh CLI returned non-zero exit code:",F),console.warn("stderr:",$),{token:null,error:`gh auth token failed: ${$.trim()||"unknown error"}`};if(!D.trim())return console.warn("gh auth token returned empty output"),{token:null,error:"gh CLI returned empty token"};return{token:D.trim()}}catch(D){let F=D instanceof Error?D.message:String(D);if(console.error("Failed to get GitHub token from gh CLI:",F),F.includes("ENOENT")||F.includes("not found"))return{token:null,error:"gh CLI not installed (command not found)"};return{token:null,error:`gh CLI error: ${F}`}}}async function VX(D){try{let{stdout:F,exitCode:$,stderr:Q}=await w(["gh","api","user","--jq",".login"]);if($!==0){if(Q.includes("not logged in")||Q.includes("auth login"))return{authenticated:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};return{authenticated:!1,error:`gh CLI error: ${Q.trim()||"unknown error"}`}}let J=F.trim();if(!J)return{authenticated:!1,error:"gh CLI returned empty username"};if(D){let Y=J.toLowerCase()===D.toLowerCase();return{authenticated:!0,username:J,matches:Y,error:Y?void 0:`gh CLI authenticated as '${J}', expected '${D}'`}}return{authenticated:!0,username:J}}catch(F){let $=F instanceof Error?F.message:String(F);if($.includes("ENOENT")||$.includes("not found"))return{authenticated:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{authenticated:!1,error:`Failed to verify gh CLI: ${$}`}}}async function EX(D){if(!/^[a-zA-Z0-9_.-]+\/[a-zA-Z0-9_.-]+$/.test(D))return{accepted:!1,error:`Invalid repository format: ${D}`};let{stdout:F,exitCode:$,stderr:Q}=await w(["gh","api","/user/repository_invitations"]);if($!==0){if(Q.includes("not logged in")||Q.includes("auth login"))return{accepted:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};if(Q.includes("API rate limit")||Q.includes("403"))return{accepted:!1,error:"GitHub API rate limit exceeded. Please try again in a few minutes."};if(Q.includes("ENOENT")||Q.includes("not found"))return{accepted:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{accepted:!1,error:`Failed to list invitations: ${Q.trim()||"unknown error"}`}}let J=null;try{J=JSON.parse(F||"[]").find((W)=>W.repository.full_name===D)?.id??null}catch(B){let G=B instanceof Error?B.message:String(B);return console.error("Failed to parse GitHub invitations response:",G),console.error(" Raw response (first 500 chars):",(F||"").slice(0,500)),{accepted:!1,error:`Failed to parse GitHub API response: ${G}`}}if(!J){let{exitCode:B}=await w(["gh","api",`/repos/${D}`,"--silent"]);if(B===0)return{accepted:!0,alreadyCollaborator:!0};return{accepted:!1,error:`No pending invitation found for ${D}. You may need to accept it manually via GitHub.`}}let{exitCode:Y,stderr:X}=await w(["gh","api","--method","PATCH",`/user/repository_invitations/${J}`]);if(Y!==0)return{accepted:!1,error:`Failed to accept invitation: ${X.trim()||"unknown error"}`};return{accepted:!0}}async function s8(D,F,$="origin"){let Q=F;if(process.env.GH_TOKEN&&F.startsWith("git@github.com:")){let J=process.env.GH_TOKEN.trim();if(!J||/\s/.test(J))return{success:!1,error:"GH_TOKEN environment variable is set but appears malformed (empty or contains whitespace)"};Q=`https://github.com/${F.replace("git@github.com:","")}`,await w(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${J}'`],{cwd:D})}else if(F.startsWith("git@github.com:")){let J=F.replace("git@github.com:",""),Y=await W$();if(Y.token)Q=`https://github.com/${J}`,await w(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${Y.token}'`],{cwd:D});else{let X=await fI0();if(X.works)Q=F;else return{success:!1,error:`GitHub authentication not configured.
107
107
 
108
108
  gh CLI failed: ${Y.error||"could not get token"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "nemar-cli",
3
- "version": "0.8.76-dev.1759",
3
+ "version": "0.9.0-dev.1761",
4
4
  "description": "CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",
5
5
  "type": "module",
6
6
  "main": "dist/index.js",