nemar-cli 0.8.76-PR931.a9df607 → 0.8.76-PR934.63eaa7d

package/dist/index.js

@@ -95,7 +95,7 @@ ${W.dim(`eta:  ${D.eta}`)}`:"";process.stderr.write(`${F}
 ${$} ${D.message}
 ${J}${Q}
 ${F}
-`)}var yf=!1;var gW=j(()=>{c0()});var _f;var xf=j(()=>{_f={name:"nemar-cli",version:"0.8.76-PR931.a9df607",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var x4;var QQ=j(()=>{xf();x4=_f.version});function X0(D){if(D instanceof Error)return D.message;return String(D)}var _,_4;var F1=j(()=>{_=class _ extends Error{statusCode;details;step;constructor(D,F,$,J){super(F);this.statusCode=D;this.details=$;this.step=J;this.name="ApiError"}};_4=class _4 extends _{mode;eta;constructor(D,F,$,J){super(503,F,J);this.mode=D;this.eta=$;this.name="MaintenanceError"}}});function ff(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(hW)return bW;return FD().apiUrl||bW}async function v(D,F={},$=!1){let J=`${ff()}${D}`,Q={"Content-Type":"application/json","X-CLI-Version":x4,...F.headers};if($){let X=FD();if(!X.apiKey&&$===!0)throw new _(401,"Not authenticated. Run 'nemar auth login' first.");if(X.apiKey)Q.Authorization=`Bearer ${X.apiKey}`}let Y;try{Y=await fetch(J,{...F,headers:Q})}catch(X){throw new _(0,`Network error: Could not connect to ${ff()}`,{originalError:X instanceof Error?X.message:String(X)})}let B;try{B=await Y.json()}catch{throw new _(Y.status,`Invalid response from server (status ${Y.status})`)}if(!Y.ok){if(Y.status===503&&(B.mode==="read-only"||B.mode==="full")){let X=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",G=typeof B.eta==="string"?B.eta:null,H=new _4(B.mode,X,G,B.details);throw JQ(H),H}throw new _(Y.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}return B}var bW="https://api.nemar.org",hW;var c6=j(()=>{d6();gW();QQ();F1();hW=bW.includes("workers.dev")});async function gf(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let J=$.toString()?`?${$.toString()}`:"";return v(`/admin/users${J}`,{},!0)}async function bf(D){return v(`/admin/approve/${D}`,{method:"POST"},!0)}async function hf(D){return v(`/admin/revoke/${D}`,{method:"POST"},!0)}async function uf(D,F){return v(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function uW(D,F){return v(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function mf(D){return v(`/datasets/${D}/publish`,{method:"POST"},!0)}async function lf(D){return v(`/admin/datasets/${D}/ci`,{},!0)}async function f4(D){return v(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function mW(D){return v(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function lW(D){return v(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function pf(D,F){return v(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function f9(D){return v(`/admin/datasets/${D}/doi`,{},!0)}async function pW(D,F){return v(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function df(D){return v(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function cf(D,F=!1){return v(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function nf(D){return v("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function af(D){return v("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function of(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return v(`/admin/imports${F}`,{},!0)}async function sf(D){return v(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function rf(D){return v(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function YQ(D,F){return v(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function tf(D,F){return v("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function ef(D){let F=D?.limit??15;return v(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(F))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Dg(){return v("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Fg(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return v(`/admin/fleet/drift${$}`,{},!0)}async function kF(D,F){return v(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function $g(D){return v("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function Jg(D,F=!1){return v(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function Qg(D){let F=D?`?user=${encodeURIComponent(D)}`:"";return v(`/admin/email-preferences${F}`,{},!0)}async function Yg(D,F){let $=F?`?user=${encodeURIComponent(F)}`:"";return v(`/admin/email-preferences${$}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function dW(D){return v("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function Bg(){return v("/admin/summary/coverage",{},!0)}async function Xg(D,F,$){return v("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var g9=j(()=>{c6()});async function O8(D,F){return v(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function cW(D,F){return v(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function Gg(D){return v(`/admin/datasets/${D}/files`,{},!0)}async function Wg(D){let F,$=0,J=[],Q=!0;while(Q){let Y=await v(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)J.push(...Y.failed);if(Q=Y.hasMore,F=Y.continuation_token,Q&&!F)throw new _(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:J}}var vF=j(()=>{c6();F1()});async function XQ(D){return v(`/datasets/${D}/ci/status`,{},!0)}async function Hg(D){return v(`/datasets/${D}/manifest`,{},!0)}async function GQ(D,F){return v(`/datasets/${D}/manifest/${F}`,{},!0)}function Kg(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function yF(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.hasHed)F.set("has_hed","1");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",J=await v(`/datasets${$}`,{},D.mine?!0:"optional");return J.datasets=J.datasets.map(Kg),J}async function qg(D){return v(`/datasets/resolve/${D}`,{},"optional")}async function zg(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));if(F.hasHed)$.set("has_hed","1");return v(`/datasets/search?${$.toString()}`,{},"optional")}async function OD(D){let F=await v(`/datasets/${D}`,{},"optional");return Kg(F.dataset)}async function Eg(D){return v(`/datasets/${D}/versions`,{},!0)}async function WQ(D){return v("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function HQ(D){return v(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function nW(D){return v(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function Vg(D,F){let $=F?`?status=${F}`:"";return v(`/datasets/${D}/access-requests${$}`,{},!0)}async function Zg(D,F){return v(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Ug(D,F){return v(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Lg(D,F){return v(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Mg(D){return v(`/datasets/${D}/collaborators`,{},!0)}async function Ag(D,F){return v(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}var BQ;var g4=j(()=>{c6();BQ=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var xF;var Tg=j(()=>{xF=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function KQ(D){return v(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function jg(D){return v(`/datasets/${D}/publish/status`,{},!0)}async function Pg(D){return v(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Ig(D){let F=D?`?status=${D}`:"";return v(`/admin/publish/requests${F}`,{},!0)}async function Sg(D,F){return v(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function fV0(D,F=[]){if(D){let $=xF.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,xF.length)}function gV0(D){if(!(D instanceof _))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function qQ(D,F=!1,$=!1,J=!1,Q,Y){let G,H,K=0,q=!1,E,z=F,Z=[],U;function A(M,R,w,S){if(!Y)return;Y({step:M,stepIndex:fV0(M,R),stepTotal:xF.length,s3LockLocked:w,s3LockTotal:S,s3LockResumed:M==="s3_lock"&&q?!0:void 0})}for(let M=1;M<=5;M++)try{let R,w=!0;do{if(R=await v(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:w?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:H,skip_ci_check:J})},!0),w=!1,R.step_results)Z.push(...R.step_results);if(R.s3_lock_total!==void 0)H=R.s3_lock_total;if(R.s3_lock_batch_count!==void 0)K+=R.s3_lock_batch_count;let S=R.step??R.step_results?.[R.step_results.length-1]?.step;if(S&&(S!==E||S==="s3_lock"))A(S,R.steps_completed??[],S==="s3_lock"?K:void 0,S==="s3_lock"?H:void 0),E=S;if(R.hasMore&&R.s3_lock_continuation_token!==void 0)G=R.s3_lock_continuation_token;else break}while(R.hasMore);if(Z.length>0)R.step_results=wg(Z);return R}catch(R){if(U=R,M===5||!gV0(R)){if(R instanceof _&&Z.length>0)R.stepResults=wg(Z);throw R}let S=R;if(Q?.({attempt:M,maxAttempts:5,delayMs:1e4,step:S.step,error:S.message}),await new Promise((N)=>setTimeout(N,1e4)),z=!0,G!==void 0)q=!0}throw U}function wg(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}var zQ=j(()=>{Tg();c6();F1()});function yg(D){aW=D}function oW(){return aW}function b9(D){if(aW)process.stderr.write(`${D}
+`)}var yf=!1;var gW=j(()=>{c0()});var _f;var xf=j(()=>{_f={name:"nemar-cli",version:"0.8.76-PR934.63eaa7d",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var x4;var QQ=j(()=>{xf();x4=_f.version});function X0(D){if(D instanceof Error)return D.message;return String(D)}var _,_4;var F1=j(()=>{_=class _ extends Error{statusCode;details;step;constructor(D,F,$,J){super(F);this.statusCode=D;this.details=$;this.step=J;this.name="ApiError"}};_4=class _4 extends _{mode;eta;constructor(D,F,$,J){super(503,F,J);this.mode=D;this.eta=$;this.name="MaintenanceError"}}});function ff(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(hW)return bW;return FD().apiUrl||bW}async function v(D,F={},$=!1){let J=`${ff()}${D}`,Q={"Content-Type":"application/json","X-CLI-Version":x4,...F.headers};if($){let X=FD();if(!X.apiKey&&$===!0)throw new _(401,"Not authenticated. Run 'nemar auth login' first.");if(X.apiKey)Q.Authorization=`Bearer ${X.apiKey}`}let Y;try{Y=await fetch(J,{...F,headers:Q})}catch(X){throw new _(0,`Network error: Could not connect to ${ff()}`,{originalError:X instanceof Error?X.message:String(X)})}let B;try{B=await Y.json()}catch{throw new _(Y.status,`Invalid response from server (status ${Y.status})`)}if(!Y.ok){if(Y.status===503&&(B.mode==="read-only"||B.mode==="full")){let X=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",G=typeof B.eta==="string"?B.eta:null,H=new _4(B.mode,X,G,B.details);throw JQ(H),H}throw new _(Y.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}return B}var bW="https://api.nemar.org",hW;var c6=j(()=>{d6();gW();QQ();F1();hW=bW.includes("workers.dev")});async function gf(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let J=$.toString()?`?${$.toString()}`:"";return v(`/admin/users${J}`,{},!0)}async function bf(D){return v(`/admin/approve/${D}`,{method:"POST"},!0)}async function hf(D){return v(`/admin/revoke/${D}`,{method:"POST"},!0)}async function uf(D,F){return v(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function uW(D,F){return v(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function mf(D){return v(`/datasets/${D}/publish`,{method:"POST"},!0)}async function lf(D){return v(`/admin/datasets/${D}/ci`,{},!0)}async function f4(D){return v(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function mW(D){return v(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function lW(D){return v(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function pf(D,F){return v(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function f9(D){return v(`/admin/datasets/${D}/doi`,{},!0)}async function pW(D,F){return v(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function df(D){return v(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function cf(D,F=!1){return v(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function nf(D){return v("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function af(D){return v("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function of(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return v(`/admin/imports${F}`,{},!0)}async function sf(D){return v(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function rf(D){return v(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function YQ(D,F){return v(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function tf(D,F){return v("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function ef(D){let F=D?.limit??15;return v(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(F))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Dg(){return v("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Fg(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return v(`/admin/fleet/drift${$}`,{},!0)}async function kF(D,F){return v(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function $g(D){return v("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function Jg(D,F=!1){return v(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function Qg(D){let F=D?`?user=${encodeURIComponent(D)}`:"";return v(`/admin/email-preferences${F}`,{},!0)}async function Yg(D,F){let $=F?`?user=${encodeURIComponent(F)}`:"";return v(`/admin/email-preferences${$}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function dW(D){return v("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function Bg(){return v("/admin/summary/coverage",{},!0)}async function Xg(D,F,$){return v("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var g9=j(()=>{c6()});async function O8(D,F){return v(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function cW(D,F){return v(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function Gg(D){return v(`/admin/datasets/${D}/files`,{},!0)}async function Wg(D){let F,$=0,J=[],Q=!0;while(Q){let Y=await v(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)J.push(...Y.failed);if(Q=Y.hasMore,F=Y.continuation_token,Q&&!F)throw new _(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:J}}var vF=j(()=>{c6();F1()});async function XQ(D){return v(`/datasets/${D}/ci/status`,{},!0)}async function Hg(D){return v(`/datasets/${D}/manifest`,{},!0)}async function GQ(D,F){return v(`/datasets/${D}/manifest/${F}`,{},!0)}function Kg(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function yF(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.hasHed)F.set("has_hed","1");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",J=await v(`/datasets${$}`,{},D.mine?!0:"optional");return J.datasets=J.datasets.map(Kg),J}async function qg(D){return v(`/datasets/resolve/${D}`,{},"optional")}async function zg(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));if(F.hasHed)$.set("has_hed","1");return v(`/datasets/search?${$.toString()}`,{},"optional")}async function OD(D){let F=await v(`/datasets/${D}`,{},"optional");return Kg(F.dataset)}async function Eg(D){return v(`/datasets/${D}/versions`,{},!0)}async function WQ(D){return v("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function HQ(D){return v(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function nW(D){return v(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function Vg(D,F){let $=F?`?status=${F}`:"";return v(`/datasets/${D}/access-requests${$}`,{},!0)}async function Zg(D,F){return v(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Ug(D,F){return v(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Lg(D,F){return v(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Mg(D){return v(`/datasets/${D}/collaborators`,{},!0)}async function Ag(D,F){return v(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}var BQ;var g4=j(()=>{c6();BQ=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});var xF;var Tg=j(()=>{xF=["ci_check","enrichment_check","s3_public_read","repo_public","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});async function KQ(D){return v(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function jg(D){return v(`/datasets/${D}/publish/status`,{},!0)}async function Pg(D){return v(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Ig(D){let F=D?`?status=${D}`:"";return v(`/admin/publish/requests${F}`,{},!0)}async function Sg(D,F){return v(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function fV0(D,F=[]){if(D){let $=xF.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,xF.length)}function gV0(D){if(!(D instanceof _))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function qQ(D,F=!1,$=!1,J=!1,Q,Y){let G,H,K=0,q=!1,E,z=F,Z=[],U;function A(M,R,w,S){if(!Y)return;Y({step:M,stepIndex:fV0(M,R),stepTotal:xF.length,s3LockLocked:w,s3LockTotal:S,s3LockResumed:M==="s3_lock"&&q?!0:void 0})}for(let M=1;M<=5;M++)try{let R,w=!0;do{if(R=await v(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:w?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:H,skip_ci_check:J})},!0),w=!1,R.step_results)Z.push(...R.step_results);if(R.s3_lock_total!==void 0)H=R.s3_lock_total;if(R.s3_lock_batch_count!==void 0)K+=R.s3_lock_batch_count;let S=R.step??R.step_results?.[R.step_results.length-1]?.step;if(S&&(S!==E||S==="s3_lock"))A(S,R.steps_completed??[],S==="s3_lock"?K:void 0,S==="s3_lock"?H:void 0),E=S;if(R.hasMore&&R.s3_lock_continuation_token!==void 0)G=R.s3_lock_continuation_token;else break}while(R.hasMore);if(Z.length>0)R.step_results=wg(Z);return R}catch(R){if(U=R,M===5||!gV0(R)){if(R instanceof _&&Z.length>0)R.stepResults=wg(Z);throw R}let S=R;if(Q?.({attempt:M,maxAttempts:5,delayMs:1e4,step:S.step,error:S.message}),await new Promise((N)=>setTimeout(N,1e4)),z=!0,G!==void 0)q=!0}throw U}function wg(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}var zQ=j(()=>{Tg();c6();F1()});function yg(D){aW=D}function oW(){return aW}function b9(D){if(aW)process.stderr.write(`${D}
 `)}var aW=!1;var xg={};r6(xg,{runCommand:()=>T});var{spawn:bV0}=globalThis.Bun;async function T(D,F={}){let $={...process.env,GIT_TERMINAL_PROMPT:"0",...F.env};for(let H of F.unsetEnv??[])delete $[H];let J=bV0({cmd:D,cwd:F.cwd,stdout:"pipe",stderr:"pipe",env:$}),Q=!1,Y;if(F.timeout)Y=setTimeout(()=>{Q=!0,J.kill()},F.timeout);if(oW()){let H=F.cwd?` (cwd=${F.cwd})`:"";b9(W.dim(`$ ${D.join(" ")}${H}`))}let B=await new Response(J.stdout).text(),X=await new Response(J.stderr).text(),G=await J.exited;if(Y)clearTimeout(Y);if(oW()){if(B.trim())b9(W.dim(B.trimEnd()));if(X.trim())b9(W.yellow(X.trimEnd()));b9(W.dim(`(exit ${G})`))}if(Q)return{stdout:B,stderr:X||`Command timed out after ${Math.round(F.timeout/1000)}s`,exitCode:G??1};return{stdout:B,stderr:X,exitCode:G}}var $1=j(()=>{c0()});async function hV0(){try{let{exitCode:D,stderr:F}=await T(["ssh","-T","-o","BatchMode=yes","-o","ConnectTimeout=5","git@github.com"]),$=F.includes("successfully authenticated");if(!$)console.warn("SSH test to github.com failed:",{exitCode:D,stderr:F.trim().slice(0,500)});return{works:$,error:$?void 0:F.trim().slice(0,500)}}catch(D){let F=D instanceof Error?D.message:String(D);return console.warn("SSH test exception:",F),{works:!1,error:F}}}async function h9(){try{let{stdout:D,exitCode:F,stderr:$}=await T(["gh","auth","token"]);if(F!==0)return console.warn("gh CLI returned non-zero exit code:",F),console.warn("stderr:",$),{token:null,error:`gh auth token failed: ${$.trim()||"unknown error"}`};if(!D.trim())return console.warn("gh auth token returned empty output"),{token:null,error:"gh CLI returned empty token"};return{token:D.trim()}}catch(D){let F=D instanceof Error?D.message:String(D);if(console.error("Failed to get GitHub token from gh CLI:",F),F.includes("ENOENT")||F.includes("not found"))return{token:null,error:"gh CLI not installed (command not found)"};return{token:null,error:`gh CLI error: ${F}`}}}async function EQ(D){try{let{stdout:F,exitCode:$,stderr:J}=await T(["gh","api","user","--jq",".login"]);if($!==0){if(J.includes("not logged in")||J.includes("auth login"))return{authenticated:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};return{authenticated:!1,error:`gh CLI error: ${J.trim()||"unknown error"}`}}let Q=F.trim();if(!Q)return{authenticated:!1,error:"gh CLI returned empty username"};if(D){let Y=Q.toLowerCase()===D.toLowerCase();return{authenticated:!0,username:Q,matches:Y,error:Y?void 0:`gh CLI authenticated as '${Q}', expected '${D}'`}}return{authenticated:!0,username:Q}}catch(F){let $=F instanceof Error?F.message:String(F);if($.includes("ENOENT")||$.includes("not found"))return{authenticated:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{authenticated:!1,error:`Failed to verify gh CLI: ${$}`}}}async function VQ(D){if(!/^[a-zA-Z0-9_.-]+\/[a-zA-Z0-9_.-]+$/.test(D))return{accepted:!1,error:`Invalid repository format: ${D}`};let{stdout:F,exitCode:$,stderr:J}=await T(["gh","api","/user/repository_invitations"]);if($!==0){if(J.includes("not logged in")||J.includes("auth login"))return{accepted:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};if(J.includes("API rate limit")||J.includes("403"))return{accepted:!1,error:"GitHub API rate limit exceeded. Please try again in a few minutes."};if(J.includes("ENOENT")||J.includes("not found"))return{accepted:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{accepted:!1,error:`Failed to list invitations: ${J.trim()||"unknown error"}`}}let Q=null;try{Q=JSON.parse(F||"[]").find((H)=>H.repository.full_name===D)?.id??null}catch(X){let G=X instanceof Error?X.message:String(X);return console.error("Failed to parse GitHub invitations response:",G),console.error("  Raw response (first 500 chars):",(F||"").slice(0,500)),{accepted:!1,error:`Failed to parse GitHub API response: ${G}`}}if(!Q){let{exitCode:X}=await T(["gh","api",`/repos/${D}`,"--silent"]);if(X===0)return{accepted:!0,alreadyCollaborator:!0};return{accepted:!1,error:`No pending invitation found for ${D}. You may need to accept it manually via GitHub.`}}let{exitCode:Y,stderr:B}=await T(["gh","api","--method","PATCH",`/user/repository_invitations/${Q}`]);if(Y!==0)return{accepted:!1,error:`Failed to accept invitation: ${B.trim()||"unknown error"}`};return{accepted:!0}}async function n6(D,F,$="origin"){let J=F;if(process.env.GH_TOKEN&&F.startsWith("git@github.com:")){let Q=process.env.GH_TOKEN.trim();if(!Q||/\s/.test(Q))return{success:!1,error:"GH_TOKEN environment variable is set but appears malformed (empty or contains whitespace)"};J=`https://github.com/${F.replace("git@github.com:","")}`,await T(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${Q}'`],{cwd:D})}else if(F.startsWith("git@github.com:")){let Q=F.replace("git@github.com:",""),Y=await h9();if(Y.token)J=`https://github.com/${Q}`,await T(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${Y.token}'`],{cwd:D});else{let B=await hV0();if(B.works)J=F;else return{success:!1,error:`GitHub authentication not configured.
 
 gh CLI failed: ${Y.error||"could not get token"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "nemar-cli",
-  "version": "0.8.76-PR931.a9df607",
+  "version": "0.8.76-PR934.63eaa7d",
   "description": "CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",
   "type": "module",
   "main": "dist/index.js",