nemar-cli 0.8.73-PR874.301b5f3 → 0.8.73-PR875.d204bb6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +1 -1
- package/package.json +1 -1
package/dist/index.js
CHANGED
|
@@ -95,7 +95,7 @@ ${W.dim(`eta: ${D.eta}`)}`:"";process.stderr.write(`${F}
|
|
|
95
95
|
${$} ${D.message}
|
|
96
96
|
${J}${Q}
|
|
97
97
|
${F}
|
|
98
|
-
`)}var df=!1;var kW=S(()=>{ND()});var nf;var cf=S(()=>{nf={name:"nemar-cli",version:"0.8.73-PR874.301b5f3",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var _4;var DQ=S(()=>{cf();_4=nf.version});function O0(D){if(D instanceof Error)return D.message;return String(D)}function af(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(yW)return vW;return $D().apiUrl||vW}async function x(D,F={},$=!1){let J=`${af()}${D}`,Q={"Content-Type":"application/json","X-CLI-Version":_4,...F.headers};if($){let X=$D();if(!X.apiKey&&$===!0)throw new f(401,"Not authenticated. Run 'nemar auth login' first.");if(X.apiKey)Q.Authorization=`Bearer ${X.apiKey}`}let Y;try{Y=await fetch(J,{...F,headers:Q})}catch(X){throw new f(0,`Network error: Could not connect to ${af()}`,{originalError:X instanceof Error?X.message:String(X)})}let B;try{B=await Y.json()}catch{throw new f(Y.status,`Invalid response from server (status ${Y.status})`)}if(!Y.ok){if(Y.status===503&&(B.mode==="read-only"||B.mode==="full")){let X=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",G=typeof B.eta==="string"?B.eta:null,H=new TF(B.mode,X,G,B.details);throw eJ(H),H}throw new f(Y.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}return B}async function sf(D){return x(`/auth/check-username?username=${encodeURIComponent(D)}`)}async function rf(D){return x(`/auth/check-github?username=${encodeURIComponent(D)}`)}async function tf(D){return x("/auth/signup",{method:"POST",body:JSON.stringify(D)})}async function xW(D){return x("/auth/login",{method:"POST",body:JSON.stringify({api_key:D})})}async function ef(D){return x("/auth/resend-verification",{method:"POST",body:JSON.stringify({email:D})})}async function Dg(D,F){return x("/auth/retrieve-key",{method:"POST",body:JSON.stringify({email:D,password:F})})}async function Fg(D){return x("/auth/request-key-regeneration",{method:"POST",body:JSON.stringify({email:D})})}async function $Q(){return x("/users/me",{},!0)}async function $g(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let J=$.toString()?`?${$.toString()}`:"";return x(`/admin/users${J}`,{},!0)}async function Jg(D){return x(`/admin/approve/${D}`,{method:"POST"},!0)}async function Qg(D){return x(`/admin/revoke/${D}`,{method:"POST"},!0)}async function Yg(D,F){return x(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function _W(D,F){return x(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function Bg(D){return x(`/datasets/${D}/publish`,{method:"POST"},!0)}async function Xg(D){return x(`/admin/datasets/${D}/ci`,{},!0)}async function f4(D){return x(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function fW(D){return x(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function gW(D){return x(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function JQ(D){return x(`/datasets/${D}/ci/status`,{},!0)}async function Gg(D){return x(`/datasets/${D}/manifest`,{},!0)}async function QQ(D,F){return x(`/datasets/${D}/manifest/${F}`,{},!0)}function Wg(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function PF(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",J=await x(`/datasets${$}`,{},D.mine?!0:"optional");return J.datasets=J.datasets.map(Wg),J}async function Hg(D){return x(`/datasets/resolve/${D}`,{},"optional")}async function qg(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));return x(`/datasets/search?${$.toString()}`,{},"optional")}async function gD(D){let F=await x(`/datasets/${D}`,{},"optional");return Wg(F.dataset)}async function Kg(D){return x(`/datasets/${D}/versions`,{},!0)}async function YQ(D){return x("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function BQ(D){return x(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function c8(D,F){return x(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function hW(D,F){return x(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function zg(D,F){return x(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function y9(D){return x(`/admin/datasets/${D}/doi`,{},!0)}async function bW(D,F){return x(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function uW(D){return x(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function Eg(D,F){let $=F?`?status=${F}`:"";return x(`/datasets/${D}/access-requests${$}`,{},!0)}async function Vg(D,F){return x(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Zg(D,F){return x(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Ug(D,F){return x(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Lg(D){return x(`/datasets/${D}/collaborators`,{},!0)}async function Ag(D){return x("/sandbox/complete",{method:"POST",body:JSON.stringify({dataset_id:D})},!0)}async function Mg(){return x("/sandbox/reset",{method:"POST"},!0)}async function Ng(){return x("/sandbox/status",{},!0)}async function XQ(D){return x(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function Rg(D){return x(`/datasets/${D}/publish/status`,{},!0)}async function Cg(D){return x(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Og(D){let F=D?`?status=${D}`:"";return x(`/admin/publish/requests${F}`,{},!0)}async function wg(D,F){return x(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function BV0(D,F=[]){if(D){let $=v9.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,v9.length)}function XV0(D){if(!(D instanceof f))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function GQ(D,F=!1,$=!1,J=!1,Q,Y){let G,H,q=0,K=!1,V,z=F,Z=[],U;function M(A,C,w,I){if(!Y)return;Y({step:A,stepIndex:BV0(A,C),stepTotal:v9.length,s3LockLocked:w,s3LockTotal:I,s3LockResumed:A==="s3_lock"&&K?!0:void 0})}for(let A=1;A<=5;A++)try{let C,w=!0;do{if(C=await x(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:w?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:H,skip_ci_check:J})},!0),w=!1,C.step_results)Z.push(...C.step_results);if(C.s3_lock_total!==void 0)H=C.s3_lock_total;if(C.s3_lock_batch_count!==void 0)q+=C.s3_lock_batch_count;let I=C.step??C.step_results?.[C.step_results.length-1]?.step;if(I&&(I!==V||I==="s3_lock"))M(I,C.steps_completed??[],I==="s3_lock"?q:void 0,I==="s3_lock"?H:void 0),V=I;if(C.hasMore&&C.s3_lock_continuation_token!==void 0)G=C.s3_lock_continuation_token;else break}while(C.hasMore);if(Z.length>0)C.step_results=of(Z);return C}catch(C){if(U=C,A===5||!XV0(C)){if(C instanceof f&&Z.length>0)C.stepResults=of(Z);throw C}let I=C;if(Q?.({attempt:A,maxAttempts:5,delayMs:1e4,step:I.step,error:I.message}),await new Promise((R)=>setTimeout(R,1e4)),z=!0,G!==void 0)K=!0}throw U}function of(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}async function jg(D,F){return x(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}async function Tg(D){return x(`/admin/datasets/${D}/files`,{},!0)}async function Pg(D){let F,$=0,J=[],Q=!0;while(Q){let Y=await x(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)J.push(...Y.failed);if(Q=Y.hasMore,F=Y.continuation_token,Q&&!F)throw new f(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:J}}async function Ig(D){return x(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function Sg(D,F=!1){return x(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function kg(D){return x("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function vg(D){return x("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function yg(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return x(`/admin/imports${F}`,{},!0)}async function xg(D){return x(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function _g(D){return x(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function WQ(D,F){return x(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function fg(D,F){return x("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function gg(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return x(`/admin/fleet/drift${$}`,{},!0)}async function IF(D,F){return x(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function hg(D){return x("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function bg(D,F=!1){return x(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function ug(D){let F=D?`?user=${encodeURIComponent(D)}`:"";return x(`/admin/email-preferences${F}`,{},!0)}async function mg(D,F){let $=F?`?user=${encodeURIComponent(F)}`:"";return x(`/admin/email-preferences${$}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function lg(){return x("/notices",{},"optional")}async function pg(){return x("/admin/notices",{},!0)}async function dg(D){return x("/admin/notices",{method:"POST",body:JSON.stringify(D)},!0)}async function cg(D){return x(`/admin/notices/${D}`,{method:"DELETE"},!0)}async function mW(D){return x("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function ng(){return x("/admin/summary/coverage",{},!0)}async function ig(D,F,$){return x("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var vW="https://api.nemar.org",FQ,f,TF,yW,v9;var n8=S(()=>{x4();kW();DQ();FQ=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/;f=class f extends Error{statusCode;details;step;constructor(D,F,$,J){super(F);this.statusCode=D;this.details=$;this.step=J;this.name="ApiError"}};TF=class TF extends f{mode;eta;constructor(D,F,$,J){super(503,F,J);this.mode=D;this.eta=$;this.name="MaintenanceError"}};yW=vW.includes("workers.dev");v9=["ci_check","enrichment_check","repo_public","s3_public_read","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});function sg(D){pW=D}function dW(){return pW}function x9(D){if(pW)process.stderr.write(`${D}
|
|
98
|
+
`)}var df=!1;var kW=S(()=>{ND()});var nf;var cf=S(()=>{nf={name:"nemar-cli",version:"0.8.73-PR875.d204bb6",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var _4;var DQ=S(()=>{cf();_4=nf.version});function O0(D){if(D instanceof Error)return D.message;return String(D)}function af(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(yW)return vW;return $D().apiUrl||vW}async function x(D,F={},$=!1){let J=`${af()}${D}`,Q={"Content-Type":"application/json","X-CLI-Version":_4,...F.headers};if($){let X=$D();if(!X.apiKey&&$===!0)throw new f(401,"Not authenticated. Run 'nemar auth login' first.");if(X.apiKey)Q.Authorization=`Bearer ${X.apiKey}`}let Y;try{Y=await fetch(J,{...F,headers:Q})}catch(X){throw new f(0,`Network error: Could not connect to ${af()}`,{originalError:X instanceof Error?X.message:String(X)})}let B;try{B=await Y.json()}catch{throw new f(Y.status,`Invalid response from server (status ${Y.status})`)}if(!Y.ok){if(Y.status===503&&(B.mode==="read-only"||B.mode==="full")){let X=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",G=typeof B.eta==="string"?B.eta:null,H=new TF(B.mode,X,G,B.details);throw eJ(H),H}throw new f(Y.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}return B}async function sf(D){return x(`/auth/check-username?username=${encodeURIComponent(D)}`)}async function rf(D){return x(`/auth/check-github?username=${encodeURIComponent(D)}`)}async function tf(D){return x("/auth/signup",{method:"POST",body:JSON.stringify(D)})}async function xW(D){return x("/auth/login",{method:"POST",body:JSON.stringify({api_key:D})})}async function ef(D){return x("/auth/resend-verification",{method:"POST",body:JSON.stringify({email:D})})}async function Dg(D,F){return x("/auth/retrieve-key",{method:"POST",body:JSON.stringify({email:D,password:F})})}async function Fg(D){return x("/auth/request-key-regeneration",{method:"POST",body:JSON.stringify({email:D})})}async function $Q(){return x("/users/me",{},!0)}async function $g(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let J=$.toString()?`?${$.toString()}`:"";return x(`/admin/users${J}`,{},!0)}async function Jg(D){return x(`/admin/approve/${D}`,{method:"POST"},!0)}async function Qg(D){return x(`/admin/revoke/${D}`,{method:"POST"},!0)}async function Yg(D,F){return x(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function _W(D,F){return x(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function Bg(D){return x(`/datasets/${D}/publish`,{method:"POST"},!0)}async function Xg(D){return x(`/admin/datasets/${D}/ci`,{},!0)}async function f4(D){return x(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function fW(D){return x(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function gW(D){return x(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function JQ(D){return x(`/datasets/${D}/ci/status`,{},!0)}async function Gg(D){return x(`/datasets/${D}/manifest`,{},!0)}async function QQ(D,F){return x(`/datasets/${D}/manifest/${F}`,{},!0)}function Wg(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function PF(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",J=await x(`/datasets${$}`,{},D.mine?!0:"optional");return J.datasets=J.datasets.map(Wg),J}async function Hg(D){return x(`/datasets/resolve/${D}`,{},"optional")}async function qg(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));return x(`/datasets/search?${$.toString()}`,{},"optional")}async function gD(D){let F=await x(`/datasets/${D}`,{},"optional");return Wg(F.dataset)}async function Kg(D){return x(`/datasets/${D}/versions`,{},!0)}async function YQ(D){return x("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function BQ(D){return x(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function c8(D,F){return x(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function hW(D,F){return x(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function zg(D,F){return x(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function y9(D){return x(`/admin/datasets/${D}/doi`,{},!0)}async function bW(D,F){return x(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function uW(D){return x(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function Eg(D,F){let $=F?`?status=${F}`:"";return x(`/datasets/${D}/access-requests${$}`,{},!0)}async function Vg(D,F){return x(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Zg(D,F){return x(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Ug(D,F){return x(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Lg(D){return x(`/datasets/${D}/collaborators`,{},!0)}async function Ag(D){return x("/sandbox/complete",{method:"POST",body:JSON.stringify({dataset_id:D})},!0)}async function Mg(){return x("/sandbox/reset",{method:"POST"},!0)}async function Ng(){return x("/sandbox/status",{},!0)}async function XQ(D){return x(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function Rg(D){return x(`/datasets/${D}/publish/status`,{},!0)}async function Cg(D){return x(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Og(D){let F=D?`?status=${D}`:"";return x(`/admin/publish/requests${F}`,{},!0)}async function wg(D,F){return x(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function BV0(D,F=[]){if(D){let $=v9.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,v9.length)}function XV0(D){if(!(D instanceof f))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function GQ(D,F=!1,$=!1,J=!1,Q,Y){let G,H,q=0,K=!1,V,z=F,Z=[],U;function M(A,C,w,I){if(!Y)return;Y({step:A,stepIndex:BV0(A,C),stepTotal:v9.length,s3LockLocked:w,s3LockTotal:I,s3LockResumed:A==="s3_lock"&&K?!0:void 0})}for(let A=1;A<=5;A++)try{let C,w=!0;do{if(C=await x(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:w?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:H,skip_ci_check:J})},!0),w=!1,C.step_results)Z.push(...C.step_results);if(C.s3_lock_total!==void 0)H=C.s3_lock_total;if(C.s3_lock_batch_count!==void 0)q+=C.s3_lock_batch_count;let I=C.step??C.step_results?.[C.step_results.length-1]?.step;if(I&&(I!==V||I==="s3_lock"))M(I,C.steps_completed??[],I==="s3_lock"?q:void 0,I==="s3_lock"?H:void 0),V=I;if(C.hasMore&&C.s3_lock_continuation_token!==void 0)G=C.s3_lock_continuation_token;else break}while(C.hasMore);if(Z.length>0)C.step_results=of(Z);return C}catch(C){if(U=C,A===5||!XV0(C)){if(C instanceof f&&Z.length>0)C.stepResults=of(Z);throw C}let I=C;if(Q?.({attempt:A,maxAttempts:5,delayMs:1e4,step:I.step,error:I.message}),await new Promise((R)=>setTimeout(R,1e4)),z=!0,G!==void 0)K=!0}throw U}function of(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}async function jg(D,F){return x(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}async function Tg(D){return x(`/admin/datasets/${D}/files`,{},!0)}async function Pg(D){let F,$=0,J=[],Q=!0;while(Q){let Y=await x(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)J.push(...Y.failed);if(Q=Y.hasMore,F=Y.continuation_token,Q&&!F)throw new f(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:J}}async function Ig(D){return x(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function Sg(D,F=!1){return x(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function kg(D){return x("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function vg(D){return x("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function yg(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return x(`/admin/imports${F}`,{},!0)}async function xg(D){return x(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function _g(D){return x(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function WQ(D,F){return x(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function fg(D,F){return x("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function gg(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return x(`/admin/fleet/drift${$}`,{},!0)}async function IF(D,F){return x(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function hg(D){return x("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function bg(D,F=!1){return x(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function ug(D){let F=D?`?user=${encodeURIComponent(D)}`:"";return x(`/admin/email-preferences${F}`,{},!0)}async function mg(D,F){let $=F?`?user=${encodeURIComponent(F)}`:"";return x(`/admin/email-preferences${$}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function lg(){return x("/notices",{},"optional")}async function pg(){return x("/admin/notices",{},!0)}async function dg(D){return x("/admin/notices",{method:"POST",body:JSON.stringify(D)},!0)}async function cg(D){return x(`/admin/notices/${D}`,{method:"DELETE"},!0)}async function mW(D){return x("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function ng(){return x("/admin/summary/coverage",{},!0)}async function ig(D,F,$){return x("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var vW="https://api.nemar.org",FQ,f,TF,yW,v9;var n8=S(()=>{x4();kW();DQ();FQ=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/;f=class f extends Error{statusCode;details;step;constructor(D,F,$,J){super(F);this.statusCode=D;this.details=$;this.step=J;this.name="ApiError"}};TF=class TF extends f{mode;eta;constructor(D,F,$,J){super(503,F,J);this.mode=D;this.eta=$;this.name="MaintenanceError"}};yW=vW.includes("workers.dev");v9=["ci_check","enrichment_check","repo_public","s3_public_read","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});function sg(D){pW=D}function dW(){return pW}function x9(D){if(pW)process.stderr.write(`${D}
|
|
99
99
|
`)}var pW=!1;function YD(D){if(D===0)return"0 B";let F=["B","KB","MB","GB","TB"],$=Math.min(Math.floor(Math.log(D)/Math.log(1024)),F.length-1);return`${(D/1024**$).toFixed($===0?0:1)} ${F[$]}`}function rg(D){return`${YD(D)}/s`}function GV0(D){if(D<60)return`${Math.round(D)}s`;if(D<3600)return`${Math.floor(D/60)}m ${Math.round(D%60)}s`;return`${Math.floor(D/3600)}h ${Math.floor(D%3600/60)}m`}function WV0(D,F=20){let $=Math.round(D/100*F),J=F-$;return`[${"=".repeat($)}${" ".repeat(J)}]`}class HQ{filesCompleted=0;filesTotal;bytesTotal=0;inFlight=new Map;currentFile="";startTime;lastUpdateTime;lastBytesTransferred=0;totalBytesTransferred=0;speedSamples=[];lastRenderedLine="";constructor(D=0,F=0){this.filesTotal=D,this.bytesTotal=F,this.startTime=Date.now(),this.lastUpdateTime=this.startTime}inFlightBytes(){let D=0;for(let F of this.inFlight.values())D+=F.transferred;return D}processLine(D){let F=D.file??D.action?.file;if(D.ok===!0||D.success===!0){this.filesCompleted++;let $=F??this.currentFile,J=$?this.inFlight.get($):void 0,Q=J?J.total||J.transferred:0;if(this.totalBytesTransferred+=Q,$)this.inFlight.delete($);this.render();return}if(D["byte-progress"]!==void 0){let $=F??this.currentFile;if(!$)return;this.currentFile=$;let J=this.inFlight.get($)??{transferred:0,total:0};if(J.transferred=D["byte-progress"]??J.transferred,D["total-size"]!==void 0)J.total=D["total-size"];this.inFlight.set($,J);let Q=Date.now(),Y=(Q-this.lastUpdateTime)/1000;if(Y>0.5){let B=this.totalBytesTransferred+this.inFlightBytes(),G=(B-this.lastBytesTransferred)/Y;if(G>0){if(this.speedSamples.push(G),this.speedSamples.length>5)this.speedSamples.shift()}this.lastBytesTransferred=B,this.lastUpdateTime=Q}this.render()}}incrementFilesCompleted(){this.filesCompleted++}setFilesTotal(D){this.filesTotal=D}setBytesTotal(D){this.bytesTotal=D}getPercent(){let D=this.totalBytesTransferred+this.inFlightBytes();if(this.bytesTotal>0)return Math.min(100,Math.round(D/this.bytesTotal*100));if(this.filesTotal>0)return Math.min(100,Math.round(this.filesCompleted/this.filesTotal*100));return null}getProgress(){return{filesCompleted:this.filesCompleted,filesTotal:this.filesTotal,bytesTransferred:this.totalBytesTransferred+this.inFlightBytes(),bytesTotal:this.bytesTotal,currentFile:this.currentFile||void 0}}render(){let D=this.speedSamples.length>0?this.speedSamples.reduce((B,X)=>B+X,0)/this.speedSamples.length:0,F=this.totalBytesTransferred+this.inFlightBytes(),$=0,J=!1;if(this.bytesTotal>0)$=Math.min(100,Math.round(F/this.bytesTotal*100)),J=!0;else if(this.filesTotal>0)$=Math.min(100,Math.round(this.filesCompleted/this.filesTotal*100)),J=!0;let Q=this.filesTotal>0?`${this.filesCompleted}/${this.filesTotal} files`:`${this.filesCompleted} files`,Y;if(J)Y=`${WV0($)} ${$}% ${Q}`;else Y=Q;if(F>0){let B=this.bytesTotal>0?`${YD(F)}/${YD(this.bytesTotal)}`:YD(F);Y+=` | ${B}`}if(D>0)Y+=` | ${rg(D)}`;if(D>0){let B=0;if(this.bytesTotal>0)B=Math.max(0,this.bytesTotal-F);else for(let X of this.inFlight.values())if(X.total>X.transferred)B+=X.total-X.transferred;if(B>0){let X=B/D;if(X>0)Y+=` | ETA ${GV0(X)}`}}if(Y!==this.lastRenderedLine)process.stderr.write(`\r${W.cyan(Y)}${" ".repeat(10)}`),this.lastRenderedLine=Y}finish(D){let F=(Date.now()-this.startTime)/1000;if(process.stderr.write(`\r${" ".repeat(this.lastRenderedLine.length+15)}\r`),D>0){let $=F>0?`${rg(this.totalBytesTransferred/F)}`:"",J=[`${D} file${D!==1?"s":""} downloaded`,this.totalBytesTransferred>0?YD(this.totalBytesTransferred):"",$].filter(Boolean).join(" | ");process.stderr.write(`${W.green(J)}
|
|
100
100
|
`)}}}var cW=S(()=>{ND()});var Kh={};r6(Kh,{verifyGitHubAuth:()=>f9,toS3Credentials:()=>PD,switchBranch:()=>AV0,setKeyPresent:()=>qh,selectAnnexS3Remote:()=>$H,saveDataset:()=>a8,runCommand:()=>T,resolveUpstreamRef:()=>HH,resolveGitHubCloneAuth:()=>Wh,readRemoteHeadDatasetVersion:()=>WH,readLocalDatasetVersion:()=>GH,pushToGitHub:()=>C1,pushBranch:()=>kF,markInheritedOpenNeuroRemotesIgnored:()=>FH,listDatasetVersions:()=>QH,isWorkingTreeDirty:()=>qH,isNonFastForwardPush:()=>Xh,isGitAnnexDataset:()=>R1,isDataladDataset:()=>OV0,initOrEnableSpecialRemote:()=>Bh,initDataset:()=>n6,githubTokenCredentialHelper:()=>Gh,gitMergeFastForward:()=>zH,gitFetchOrigin:()=>KH,gitAnnexAdd:()=>i6,getVersionCommit:()=>YH,getRemoteUuid:()=>UQ,getLocalDatasetInfo:()=>JH,getKeyHashDirs:()=>RV0,getKeyHashDir:()=>Hh,getDatasetStats:()=>ZV0,getDatasetIdFromRemote:()=>s8,getDatasetData:()=>VQ,getCurrentBranch:()=>o8,getAnnexWhereisAll:()=>ZQ,getAnnexS3Remotes:()=>h9,formatBytes:()=>YD,extractWhereisKeyUrl:()=>iW,ensureLocalMainBranch:()=>b9,ensureGitAnnexInitialized:()=>tW,enableS3Remote:()=>h4,dropUnusedAnnexObjects:()=>EH,dropFiles:()=>DH,detectImportMarker:()=>EQ,createRevertBranch:()=>BH,createDataladDataset:()=>CV0,countPendingDownload:()=>zQ,copyToAnnexRemote:()=>C8,configureS3Remote:()=>o1,configureLargefiles:()=>g4,configureGitHubRemote:()=>i8,commitRevert:()=>XH,collectFileManifest:()=>VH,cloneDataset:()=>Q1,clearAnnexCredentials:()=>ID,checkPrerequisites:()=>_9,checkGitHubSSH:()=>$h,checkGitAnnexInstalled:()=>rW,checkDownloadPrerequisites:()=>SF,checkAWSCredentials:()=>zV0,batchSetKeysPresent:()=>ZH,awsCredentialEnv:()=>KQ,annexRemoteExists:()=>Yh,acceptGitHubInvitation:()=>g9,NEMAR_S3_REMOTE_NAME:()=>qQ,ANNEX_REMOTE_EXISTS_RE:()=>Qh});import{existsSync as aW,readFileSync as HV0,statSync as qV0}from"fs";import{join as oW}from"path";var{spawn:sW}=globalThis.Bun;async function T(D,F={}){let $={...process.env,GIT_TERMINAL_PROMPT:"0",...F.env};for(let H of F.unsetEnv??[])delete $[H];let J=sW({cmd:D,cwd:F.cwd,stdout:"pipe",stderr:"pipe",env:$}),Q=!1,Y;if(F.timeout)Y=setTimeout(()=>{Q=!0,J.kill()},F.timeout);if(dW()){let H=F.cwd?` (cwd=${F.cwd})`:"";x9(W.dim(`$ ${D.join(" ")}${H}`))}let B=await new Response(J.stdout).text(),X=await new Response(J.stderr).text(),G=await J.exited;if(Y)clearTimeout(Y);if(dW()){if(B.trim())x9(W.dim(B.trimEnd()));if(X.trim())x9(W.yellow(X.trimEnd()));x9(W.dim(`(exit ${G})`))}if(Q)return{stdout:B,stderr:X||`Command timed out after ${Math.round(F.timeout/1000)}s`,exitCode:G??1};return{stdout:B,stderr:X,exitCode:G}}function tg(D){return D.split(".").map((F)=>{let $=Number.parseInt(F.replace(/[^0-9]/g,""),10);return Number.isNaN($)?0:$})}function KV0(D,F){let $=tg(D),J=tg(F);for(let Q=0;Q<Math.max($.length,J.length);Q++){let Y=$[Q]||0,B=J[Q]||0;if(Y>B)return!0;if(Y<B)return!1}return!0}async function rW(){try{let{stdout:F,exitCode:$,stderr:J}=await T(["git-annex","version"]);if($!==0)return console.warn("git-annex version returned non-zero exit code:",$),console.warn("stderr:",J),{installed:!1,minVersion:"10.0",error:`Version check failed: ${J.trim()}`};let Q=F.match(/version:\s*(\d+\.\d+)/),Y=Q?Q[1]:void 0;if(!Y)console.warn("Could not parse git-annex version from output:",F);return{installed:!0,version:Y,minVersion:"10.0",compatible:Y?KV0(Y,"10.0"):void 0}}catch(F){let $=F instanceof Error?F.message:String(F);if($.includes("ENOENT")||$.includes("not found"))return console.info("git-annex not found in PATH"),{installed:!1,minVersion:"10.0"};return console.error("Error checking git-annex installation:",$),{installed:!1,minVersion:"10.0",error:$}}}async function $h(){if(process.env.GH_TOKEN)return{accessible:!0,username:"token-auth",useHttps:!0};try{let{stdout:D,stderr:F}=await T(["ssh","-T","-o","BatchMode=yes","-o","StrictHostKeyChecking=accept-new","-o","ConnectTimeout=10","git@github.com"]),$=D+F,J=$.match(/Hi ([^!]+)!/);if(J)return{accessible:!0,username:J[1]};if($.includes("Permission denied"))return{accessible:!1};return{accessible:$.includes("successfully authenticated")}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("SSH command not found");else console.error("Error checking GitHub SSH access:",F);return{accessible:!1}}}async function zV0(){if(process.env.AWS_ACCESS_KEY_ID&&process.env.AWS_SECRET_ACCESS_KEY)return{configured:!0,source:"environment"};try{let{stdout:D,exitCode:F}=await T(["aws","configure","get","aws_access_key_id"]);if(F===0&&D.trim())return{configured:!0,source:"aws-cli"}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("AWS CLI not found in PATH");else console.error("Error checking AWS credentials:",F)}return{configured:!1}}function Jh(){let D=process.platform;if(D==="darwin")return"brew install git-annex";if(D==="linux")return"apt install git-annex (Debian/Ubuntu)";return"See https://git-annex.branchable.com/install/"}async function _9(){let[D,F]=await Promise.all([rW(),$h()]),$=[];if(!D.installed)$.push(`git-annex is not installed. Install: ${Jh()}`);else if(D.compatible===!1)$.push(`git-annex version ${D.version} is too old. Required: >= ${D.minVersion}`);if(!F.accessible){if(!(await eW()).token)$.push("GitHub authentication not configured. Run 'gh auth login' to authenticate.")}return{gitAnnex:D,githubSSH:F,allPassed:$.length===0,errors:$}}async function R1(D){if(!aW(oW(D,".git")))return!1;try{let{exitCode:F}=await T(["git","annex","info"],{cwd:D});return F===0}catch(F){let $=F instanceof Error?F.message:String(F);if(!$.includes("ENOENT")&&!$.includes("not found"))console.error(`Error checking if ${D} is a git-annex dataset:`,$);return!1}}async function n6(D,F={}){if(!F.force&&await R1(D))return{success:!0};try{let $={};if(F.author)$.GIT_AUTHOR_NAME=F.author.name,$.GIT_AUTHOR_EMAIL=F.author.email,$.GIT_COMMITTER_NAME=F.author.name,$.GIT_COMMITTER_EMAIL=F.author.email;let{stderr:J,exitCode:Q}=await T(["git","init","-b","main",D],{...Object.keys($).length>0?{env:$}:{}});if(Q!==0)return{success:!1,error:J.trim()||"Failed to initialize git repository"};let Y=Object.keys($).length>0?{env:$}:{},{stderr:B,exitCode:X}=await T(["git","annex","init"],{cwd:D,...Y});if(X!==0)return{success:!1,error:B.trim()||"Failed to initialize git-annex"};let{stderr:G,exitCode:H}=await T(["git","commit","--allow-empty","-m","Initialize dataset"],{cwd:D,...Y});if(H!==0)return{success:!1,error:G.trim()||"Failed to create initial commit"};let{stderr:q,exitCode:K}=await T(["git","annex","adjust","--unlock"],{cwd:D,...Y});if(K!==0)return{success:!1,error:q.trim()||"Failed to switch to unlocked mode"};return{success:!0}}catch($){return{success:!1,error:$.message}}}async function tW(D){try{let{exitCode:F,stderr:$}=await T(["git","annex","info"],{cwd:D});if(F===0)return{success:!0};if($.includes("First run: git-annex init")){let{stderr:J,exitCode:Q}=await T(["git","annex","init"],{cwd:D});if(Q!==0)return{success:!1,error:J.trim()||"Failed to initialize git-annex"};return{success:!0}}return{success:!1,error:$.trim()||"Failed to check git-annex status"}}catch(F){return{success:!1,error:F.message}}}async function g4(D,F){let $=["*.edf","*.bdf","*.set","*.fif","*.vhdr","*.eeg","*.cnt","*.fdt"],J=["*.tsv","*.json","*.md","*.txt","*.yml","*.yaml","README*","LICENSE*","CHANGES*",".bidsignore",".gitignore"],Q=$.map((G)=>`include=${G}`).join(" or "),Y=J.map((G)=>`exclude=${G}`).join(" and "),B=`(${Q} or largerthan=100kb) and ${Y}`,X=F||B;try{let{stderr:G,exitCode:H}=await T(["git","annex","config","--set","annex.largefiles",X],{cwd:D});if(H!==0)return{success:!1,error:G.trim()||"Failed to configure largefiles"};return{success:!0}}catch(G){return{success:!1,error:G.message}}}async function i6(D,F="."){try{let{stderr:$,exitCode:J}=await T(["git","annex","add",F],{cwd:D});if(J!==0)return{success:!1,error:$.trim()||"Failed to add files to git-annex"};return{success:!0}}catch($){return{success:!1,error:$.message}}}function PD(D){return{accessKeyId:D.access_key_id,secretAccessKey:D.secret_access_key,sessionToken:D.session_token}}function nW(D){let F=[/^\(merging .* into .*\.\.\.\)$/,/^\(recording state in git\.\.\.\)$/,/^\(scanning for /,/^\(checking /];return D.split(`
|
|
101
101
|
`).filter(($)=>{let J=$.trim();if(!J)return!1;if(J.includes("setting annex-ignore"))return!1;if(F.some((Q)=>Q.test(J)))return!1;return!0}).join(`
|
package/package.json
CHANGED