nemar-cli 0.8.62-dev.1500 → 0.8.62-dev.1504
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +1 -1
- package/package.json +1 -1
package/dist/index.js
CHANGED
|
@@ -95,7 +95,7 @@ ${W.dim(`eta: ${D.eta}`)}`:"";process.stderr.write(`${F}
|
|
|
95
95
|
${$} ${D.message}
|
|
96
96
|
${J}${Q}
|
|
97
97
|
${F}
|
|
98
|
-
`)}var lf=!1;var SW=S(()=>{ND()});var df;var pf=S(()=>{df={name:"nemar-cli",version:"0.8.62-dev.1500",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var _4;var eJ=S(()=>{pf();_4=df.version});function L0(D){if(D instanceof Error)return D.message;return String(D)}function cf(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(vW)return kW;return $D().apiUrl||kW}async function x(D,F={},$=!1){let J=`${cf()}${D}`,Q={"Content-Type":"application/json","X-CLI-Version":_4,...F.headers};if($){let X=$D();if(!X.apiKey&&$===!0)throw new f(401,"Not authenticated. Run 'nemar auth login' first.");if(X.apiKey)Q.Authorization=`Bearer ${X.apiKey}`}let Y;try{Y=await fetch(J,{...F,headers:Q})}catch(X){throw new f(0,`Network error: Could not connect to ${cf()}`,{originalError:X instanceof Error?X.message:String(X)})}let B;try{B=await Y.json()}catch{throw new f(Y.status,`Invalid response from server (status ${Y.status})`)}if(!Y.ok){if(Y.status===503&&(B.mode==="read-only"||B.mode==="full")){let X=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",G=typeof B.eta==="string"?B.eta:null,H=new FQ(B.mode,X,G,B.details);throw tJ(H),H}throw new f(Y.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}return B}async function af(D){return x(`/auth/check-username?username=${encodeURIComponent(D)}`)}async function of(D){return x(`/auth/check-github?username=${encodeURIComponent(D)}`)}async function sf(D){return x("/auth/signup",{method:"POST",body:JSON.stringify(D)})}async function rf(D){return x("/auth/login",{method:"POST",body:JSON.stringify({api_key:D})})}async function tf(D){return x("/auth/resend-verification",{method:"POST",body:JSON.stringify({email:D})})}async function ef(D,F){return x("/auth/retrieve-key",{method:"POST",body:JSON.stringify({email:D,password:F})})}async function Dg(D){return x("/auth/request-key-regeneration",{method:"POST",body:JSON.stringify({email:D})})}async function $Q(){return x("/users/me",{},!0)}async function Fg(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let J=$.toString()?`?${$.toString()}`:"";return x(`/admin/users${J}`,{},!0)}async function $g(D){return x(`/admin/approve/${D}`,{method:"POST"},!0)}async function Jg(D){return x(`/admin/revoke/${D}`,{method:"POST"},!0)}async function Qg(D,F){return x(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function yW(D,F){return x(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function Yg(D){return x(`/datasets/${D}/publish`,{method:"POST"},!0)}async function Bg(D){return x(`/admin/datasets/${D}/ci`,{},!0)}async function f4(D){return x(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function xW(D){return x(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function _W(D){return x(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function JQ(D){return x(`/datasets/${D}/ci/status`,{},!0)}async function Xg(D){return x(`/datasets/${D}/manifest`,{},!0)}async function QQ(D,F){return x(`/datasets/${D}/manifest/${F}`,{},!0)}function Gg(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function TF(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",J=await x(`/datasets${$}`,{},D.mine?!0:"optional");return J.datasets=J.datasets.map(Gg),J}async function Wg(D){return x(`/datasets/resolve/${D}`,{},"optional")}async function Hg(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));return x(`/datasets/search?${$.toString()}`,{},"optional")}async function gD(D){let F=await x(`/datasets/${D}`,{},"optional");return Gg(F.dataset)}async function qg(D){return x(`/datasets/${D}/versions`,{},!0)}async function YQ(D){return x("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function BQ(D){return x(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function c8(D,F){return x(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function fW(D,F){return x(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function Kg(D,F){return x(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function v9(D){return x(`/admin/datasets/${D}/doi`,{},!0)}async function gW(D,F){return x(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function hW(D){return x(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function zg(D,F){let $=F?`?status=${F}`:"";return x(`/datasets/${D}/access-requests${$}`,{},!0)}async function Eg(D,F){return x(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Vg(D,F){return x(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Zg(D,F){return x(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Ug(D){return x(`/datasets/${D}/collaborators`,{},!0)}async function Lg(D){return x("/sandbox/complete",{method:"POST",body:JSON.stringify({dataset_id:D})},!0)}async function Ag(){return x("/sandbox/reset",{method:"POST"},!0)}async function Mg(){return x("/sandbox/status",{},!0)}async function XQ(D){return x(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function Ng(D){return x(`/datasets/${D}/publish/status`,{},!0)}async function Rg(D){return x(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Cg(D){let F=D?`?status=${D}`:"";return x(`/admin/publish/requests${F}`,{},!0)}async function Og(D,F){return x(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function QV0(D,F=[]){if(D){let $=k9.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,k9.length)}function YV0(D){if(!(D instanceof f))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function GQ(D,F=!1,$=!1,J=!1,Q,Y){let G,H,q=0,K=!1,V,z=F,Z=[],U;function M(A,C,w,I){if(!Y)return;Y({step:A,stepIndex:QV0(A,C),stepTotal:k9.length,s3LockLocked:w,s3LockTotal:I,s3LockResumed:A==="s3_lock"&&K?!0:void 0})}for(let A=1;A<=5;A++)try{let C,w=!0;do{if(C=await x(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:w?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:H,skip_ci_check:J})},!0),w=!1,C.step_results)Z.push(...C.step_results);if(C.s3_lock_total!==void 0)H=C.s3_lock_total;if(C.s3_lock_batch_count!==void 0)q+=C.s3_lock_batch_count;let I=C.step??C.step_results?.[C.step_results.length-1]?.step;if(I&&(I!==V||I==="s3_lock"))M(I,C.steps_completed??[],I==="s3_lock"?q:void 0,I==="s3_lock"?H:void 0),V=I;if(C.hasMore&&C.s3_lock_continuation_token!==void 0)G=C.s3_lock_continuation_token;else break}while(C.hasMore);if(Z.length>0)C.step_results=nf(Z);return C}catch(C){if(U=C,A===5||!YV0(C)){if(C instanceof f&&Z.length>0)C.stepResults=nf(Z);throw C}let I=C;if(Q?.({attempt:A,maxAttempts:5,delayMs:1e4,step:I.step,error:I.message}),await new Promise((R)=>setTimeout(R,1e4)),z=!0,G!==void 0)K=!0}throw U}function nf(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}async function wg(D,F){return x(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}async function jg(D){return x(`/admin/datasets/${D}/files`,{},!0)}async function Tg(D){let F,$=0,J=[],Q=!0;while(Q){let Y=await x(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)J.push(...Y.failed);if(Q=Y.hasMore,F=Y.continuation_token,Q&&!F)throw new f(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:J}}async function Pg(D){return x(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function Ig(D,F=!1){return x(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function Sg(D){return x("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function kg(D){return x("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function vg(D){return x(`/admin/datasets/${D}/sync`,{method:"POST"},!0)}async function yg(){return x("/admin/sync/status",{},!0)}async function xg(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return x(`/admin/imports${F}`,{},!0)}async function _g(D){return x(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function fg(D){return x(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function WQ(D,F){return x(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function gg(D,F){return x("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function hg(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return x(`/admin/fleet/drift${$}`,{},!0)}async function PF(D,F){return x(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function bg(D){return x("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function ug(D,F=!1){return x(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function mg(){return x("/admin/email-preferences",{},!0)}async function lg(D){return x("/admin/email-preferences",{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function pg(){return x("/notices",{},"optional")}async function dg(){return x("/admin/notices",{},!0)}async function cg(D){return x("/admin/notices",{method:"POST",body:JSON.stringify(D)},!0)}async function ng(D){return x(`/admin/notices/${D}`,{method:"DELETE"},!0)}async function bW(D){return x("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function ig(){return x("/admin/summary/coverage",{},!0)}async function ag(D,F,$){return x("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var kW="https://nemar-api-dev.sccn-org.workers.dev",DQ,f,FQ,vW,k9;var n8=S(()=>{x4();SW();eJ();DQ=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/;f=class f extends Error{statusCode;details;step;constructor(D,F,$,J){super(F);this.statusCode=D;this.details=$;this.step=J;this.name="ApiError"}};FQ=class FQ extends f{mode;eta;constructor(D,F,$,J){super(503,F,J);this.mode=D;this.eta=$;this.name="MaintenanceError"}};vW=kW.includes("workers.dev");k9=["ci_check","enrichment_check","repo_public","s3_public_read","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});function rg(D){mW=D}function lW(){return mW}function y9(D){if(mW)process.stderr.write(`${D}
|
|
98
|
+
`)}var lf=!1;var SW=S(()=>{ND()});var df;var pf=S(()=>{df={name:"nemar-cli",version:"0.8.62-dev.1504",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var _4;var eJ=S(()=>{pf();_4=df.version});function L0(D){if(D instanceof Error)return D.message;return String(D)}function cf(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(vW)return kW;return $D().apiUrl||kW}async function x(D,F={},$=!1){let J=`${cf()}${D}`,Q={"Content-Type":"application/json","X-CLI-Version":_4,...F.headers};if($){let X=$D();if(!X.apiKey&&$===!0)throw new f(401,"Not authenticated. Run 'nemar auth login' first.");if(X.apiKey)Q.Authorization=`Bearer ${X.apiKey}`}let Y;try{Y=await fetch(J,{...F,headers:Q})}catch(X){throw new f(0,`Network error: Could not connect to ${cf()}`,{originalError:X instanceof Error?X.message:String(X)})}let B;try{B=await Y.json()}catch{throw new f(Y.status,`Invalid response from server (status ${Y.status})`)}if(!Y.ok){if(Y.status===503&&(B.mode==="read-only"||B.mode==="full")){let X=typeof B.message==="string"?B.message:"NEMAR is in maintenance mode. Please retry shortly.",G=typeof B.eta==="string"?B.eta:null,H=new FQ(B.mode,X,G,B.details);throw tJ(H),H}throw new f(Y.status,B.error||B.message||"Request failed",B.details,typeof B.step==="string"?B.step:void 0)}return B}async function af(D){return x(`/auth/check-username?username=${encodeURIComponent(D)}`)}async function of(D){return x(`/auth/check-github?username=${encodeURIComponent(D)}`)}async function sf(D){return x("/auth/signup",{method:"POST",body:JSON.stringify(D)})}async function rf(D){return x("/auth/login",{method:"POST",body:JSON.stringify({api_key:D})})}async function tf(D){return x("/auth/resend-verification",{method:"POST",body:JSON.stringify({email:D})})}async function ef(D,F){return x("/auth/retrieve-key",{method:"POST",body:JSON.stringify({email:D,password:F})})}async function Dg(D){return x("/auth/request-key-regeneration",{method:"POST",body:JSON.stringify({email:D})})}async function $Q(){return x("/users/me",{},!0)}async function Fg(D,F){let $=new URLSearchParams;if(D)$.set("status",D);if(F)$.set("role",F);let J=$.toString()?`?${$.toString()}`:"";return x(`/admin/users${J}`,{},!0)}async function $g(D){return x(`/admin/approve/${D}`,{method:"POST"},!0)}async function Jg(D){return x(`/admin/revoke/${D}`,{method:"POST"},!0)}async function Qg(D,F){return x(`/admin/users/${D}/role`,{method:"POST",body:JSON.stringify({role:F})},!0)}async function yW(D,F){return x(`/admin/datasets/${D}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:F})},!0)}async function Yg(D){return x(`/datasets/${D}/publish`,{method:"POST"},!0)}async function Bg(D){return x(`/admin/datasets/${D}/ci`,{},!0)}async function f4(D){return x(`/admin/datasets/${D}/ci`,{method:"POST"},!0)}async function xW(D){return x(`/admin/datasets/${D}/ci/validate`,{method:"POST"},!0)}async function _W(D){return x(`/admin/datasets/${D}/ci/sync`,{method:"POST"},!0)}async function JQ(D){return x(`/datasets/${D}/ci/status`,{},!0)}async function Xg(D){return x(`/datasets/${D}/manifest`,{},!0)}async function QQ(D,F){return x(`/datasets/${D}/manifest/${F}`,{},!0)}function Gg(D){let F=D;if(!F.status)F.status="active";else if(!["active","archived","deleted"].includes(F.status))throw Error(`Invalid dataset status: ${F.status}`);if(!F.visibility)F.visibility="private";else if(!["public","private"].includes(F.visibility))throw Error(`Invalid dataset visibility: ${F.visibility}`);return F}async function TF(D={}){let F=new URLSearchParams;if(D.mine)F.set("mine","true");if(D.search)F.set("search",D.search);if(D.modality)F.set("modality",D.modality);if(D.author)F.set("author",D.author);if(D.task)F.set("task",D.task);if(D.license)F.set("license",D.license);if(D.hasDoi)F.set("has_doi","true");if(D.recent)F.set("recent",String(D.recent));if(D.sort)F.set("sort",D.sort);if(D.limit!=null)F.set("limit",String(D.limit));if(D.offset!=null)F.set("offset",String(D.offset));if(D.owner)F.set("owner",D.owner);let $=F.toString()?`?${F.toString()}`:"",J=await x(`/datasets${$}`,{},D.mine?!0:"optional");return J.datasets=J.datasets.map(Gg),J}async function Wg(D){return x(`/datasets/resolve/${D}`,{},"optional")}async function Hg(D,F={}){let $=new URLSearchParams({q:D});if(F.modality)$.set("modality",F.modality);if(F.limit)$.set("limit",String(F.limit));return x(`/datasets/search?${$.toString()}`,{},"optional")}async function gD(D){let F=await x(`/datasets/${D}`,{},"optional");return Gg(F.dataset)}async function qg(D){return x(`/datasets/${D}/versions`,{},!0)}async function YQ(D){return x("/datasets",{method:"POST",body:JSON.stringify(D)},!0)}async function BQ(D){return x(`/datasets/${D}/finalize`,{method:"POST"},!0)}async function c8(D,F){return x(`/datasets/${D}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function fW(D,F){return x(`/datasets/${D}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:F})},!0)}async function Kg(D,F){return x(`/admin/datasets/${D}/doi/concept`,{method:"POST",body:JSON.stringify(F)},!0)}async function v9(D){return x(`/admin/datasets/${D}/doi`,{},!0)}async function gW(D,F){return x(`/admin/datasets/${D}/doi/update`,{method:"POST",body:JSON.stringify(F)},!0)}async function hW(D){return x(`/datasets/${D}/request-access`,{method:"POST"},!0)}async function zg(D,F){let $=F?`?status=${F}`:"";return x(`/datasets/${D}/access-requests${$}`,{},!0)}async function Eg(D,F){return x(`/datasets/${D}/access-requests/${F}/approve`,{method:"POST"},!0)}async function Vg(D,F){return x(`/datasets/${D}/access-requests/${F}/deny`,{method:"POST"},!0)}async function Zg(D,F){return x(`/datasets/${D}/invite`,{method:"POST",body:JSON.stringify({username:F})},!0)}async function Ug(D){return x(`/datasets/${D}/collaborators`,{},!0)}async function Lg(D){return x("/sandbox/complete",{method:"POST",body:JSON.stringify({dataset_id:D})},!0)}async function Ag(){return x("/sandbox/reset",{method:"POST"},!0)}async function Mg(){return x("/sandbox/status",{},!0)}async function XQ(D){return x(`/datasets/${D}/publish/request`,{method:"POST"},!0)}async function Ng(D){return x(`/datasets/${D}/publish/status`,{},!0)}async function Rg(D){return x(`/datasets/${D}/publish/resend`,{method:"POST"},!0)}async function Cg(D){let F=D?`?status=${D}`:"";return x(`/admin/publish/requests${F}`,{},!0)}async function Og(D,F){return x(`/admin/publish/${D}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:F})},!0)}function QV0(D,F=[]){if(D){let $=k9.indexOf(D);if($>=0)return $+1}return Math.min(F.length+1,k9.length)}function YV0(D){if(!(D instanceof f))return!1;if(D.statusCode===0)return!0;if(D.statusCode===429)return!0;if(D.statusCode>=500&&D.statusCode<600)return!0;if(D.statusCode===403&&/repository has been locked/i.test(D.message))return!0;return!1}async function GQ(D,F=!1,$=!1,J=!1,Q,Y){let G,H,q=0,K=!1,V,z=F,Z=[],U;function M(A,C,w,I){if(!Y)return;Y({step:A,stepIndex:QV0(A,C),stepTotal:k9.length,s3LockLocked:w,s3LockTotal:I,s3LockResumed:A==="s3_lock"&&K?!0:void 0})}for(let A=1;A<=5;A++)try{let C,w=!0;do{if(C=await x(`/admin/publish/${D}/approve`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({resume:w?z:!0,sandbox:$,s3_lock_continuation_token:G,s3_lock_total:H,skip_ci_check:J})},!0),w=!1,C.step_results)Z.push(...C.step_results);if(C.s3_lock_total!==void 0)H=C.s3_lock_total;if(C.s3_lock_batch_count!==void 0)q+=C.s3_lock_batch_count;let I=C.step??C.step_results?.[C.step_results.length-1]?.step;if(I&&(I!==V||I==="s3_lock"))M(I,C.steps_completed??[],I==="s3_lock"?q:void 0,I==="s3_lock"?H:void 0),V=I;if(C.hasMore&&C.s3_lock_continuation_token!==void 0)G=C.s3_lock_continuation_token;else break}while(C.hasMore);if(Z.length>0)C.step_results=nf(Z);return C}catch(C){if(U=C,A===5||!YV0(C)){if(C instanceof f&&Z.length>0)C.stepResults=nf(Z);throw C}let I=C;if(Q?.({attempt:A,maxAttempts:5,delayMs:1e4,step:I.step,error:I.message}),await new Promise((R)=>setTimeout(R,1e4)),z=!0,G!==void 0)K=!0}throw U}function nf(D){let F=new Map;for(let $ of D)F.set($.step,$);return Array.from(F.values())}async function wg(D,F){return x(`/admin/datasets/${D}/enrichment`,{method:"POST",body:JSON.stringify(F)},!0)}async function jg(D){return x(`/admin/datasets/${D}/files`,{},!0)}async function Tg(D){let F,$=0,J=[],Q=!0;while(Q){let Y=await x(`/admin/datasets/${D}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:F})},!0);if($+=Y.locked,Y.failed?.length)J.push(...Y.failed);if(Q=Y.hasMore,F=Y.continuation_token,Q&&!F)throw new f(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:$,failed:J}}async function Pg(D){return x(`/admin/datasets/${D}/reset`,{method:"POST"},!0)}async function Ig(D,F=!1){return x(`/admin/datasets/${D}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:F})},!0)}async function Sg(D){return x("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:D})},!0)}async function kg(D){return x("/admin/datasets/import",{method:"POST",body:JSON.stringify(D)},!0)}async function vg(D){return x(`/admin/datasets/${D}/sync`,{method:"POST"},!0)}async function yg(){return x("/admin/sync/status",{},!0)}async function xg(D){let F=D?`?status=${encodeURIComponent(D)}`:"";return x(`/admin/imports${F}`,{},!0)}async function _g(D){return x(`/admin/imports/${D}/rollback`,{method:"POST"},!0)}async function fg(D){return x(`/admin/imports/${D}/retry`,{method:"POST"},!0)}async function WQ(D,F){return x(`/admin/datasets/${D}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(F??{})},!0)}async function gg(D,F){return x("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:D,...F??{}})},!0)}async function hg(D){let F=new URLSearchParams;if(D?.prefix)F.set("prefix",D.prefix);if(D?.visibility)F.set("visibility",D.visibility);if(D?.limit)F.set("limit",String(D.limit));let $=F.toString()?`?${F.toString()}`:"";return x(`/admin/fleet/drift${$}`,{},!0)}async function PF(D,F){return x(`/admin/datasets/${D}/enforce`,{method:"POST",body:JSON.stringify({dry_run:F})},!0)}async function bg(D){return x("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:D.prefix,visibility:D.visibility,limit:D.limit,dry_run:D.dryRun})},!0)}async function ug(D,F=!1){return x(`/admin/datasets/${D}/revalidate${F?"?force=true":""}`,{method:"POST"},!0)}async function mg(){return x("/admin/email-preferences",{},!0)}async function lg(D){return x("/admin/email-preferences",{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(D)},!0)}async function pg(){return x("/notices",{},"optional")}async function dg(){return x("/admin/notices",{},!0)}async function cg(D){return x("/admin/notices",{method:"POST",body:JSON.stringify(D)},!0)}async function ng(D){return x(`/admin/notices/${D}`,{method:"DELETE"},!0)}async function bW(D){return x("/admin/notify",{method:"POST",body:JSON.stringify(D)},!0)}async function ig(){return x("/admin/summary/coverage",{},!0)}async function ag(D,F,$){return x("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:D,version:F,skip_canary:$?.skipCanary??!1})},!0)}var kW="https://nemar-api-dev.sccn-org.workers.dev",DQ,f,FQ,vW,k9;var n8=S(()=>{x4();SW();eJ();DQ=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/;f=class f extends Error{statusCode;details;step;constructor(D,F,$,J){super(F);this.statusCode=D;this.details=$;this.step=J;this.name="ApiError"}};FQ=class FQ extends f{mode;eta;constructor(D,F,$,J){super(503,F,J);this.mode=D;this.eta=$;this.name="MaintenanceError"}};vW=kW.includes("workers.dev");k9=["ci_check","enrichment_check","repo_public","s3_public_read","tag_protect","doi_create","update_metadata","update_readme","create_tag","create_release","upload_to_zenodo","publish_doi","version_doi","s3_lock","sync_nemar","notify_user"]});function rg(D){mW=D}function lW(){return mW}function y9(D){if(mW)process.stderr.write(`${D}
|
|
99
99
|
`)}var mW=!1;function YD(D){if(D===0)return"0 B";let F=["B","KB","MB","GB","TB"],$=Math.min(Math.floor(Math.log(D)/Math.log(1024)),F.length-1);return`${(D/1024**$).toFixed($===0?0:1)} ${F[$]}`}function tg(D){return`${YD(D)}/s`}function BV0(D){if(D<60)return`${Math.round(D)}s`;if(D<3600)return`${Math.floor(D/60)}m ${Math.round(D%60)}s`;return`${Math.floor(D/3600)}h ${Math.floor(D%3600/60)}m`}function XV0(D,F=20){let $=Math.round(D/100*F),J=F-$;return`[${"=".repeat($)}${" ".repeat(J)}]`}class HQ{filesCompleted=0;filesTotal;bytesTotal=0;inFlight=new Map;currentFile="";startTime;lastUpdateTime;lastBytesTransferred=0;totalBytesTransferred=0;speedSamples=[];lastRenderedLine="";constructor(D=0,F=0){this.filesTotal=D,this.bytesTotal=F,this.startTime=Date.now(),this.lastUpdateTime=this.startTime}inFlightBytes(){let D=0;for(let F of this.inFlight.values())D+=F.transferred;return D}processLine(D){let F=D.file??D.action?.file;if(D.ok===!0||D.success===!0){this.filesCompleted++;let $=F??this.currentFile,J=$?this.inFlight.get($):void 0,Q=J?J.total||J.transferred:0;if(this.totalBytesTransferred+=Q,$)this.inFlight.delete($);this.render();return}if(D["byte-progress"]!==void 0){let $=F??this.currentFile;if(!$)return;this.currentFile=$;let J=this.inFlight.get($)??{transferred:0,total:0};if(J.transferred=D["byte-progress"]??J.transferred,D["total-size"]!==void 0)J.total=D["total-size"];this.inFlight.set($,J);let Q=Date.now(),Y=(Q-this.lastUpdateTime)/1000;if(Y>0.5){let B=this.totalBytesTransferred+this.inFlightBytes(),G=(B-this.lastBytesTransferred)/Y;if(G>0){if(this.speedSamples.push(G),this.speedSamples.length>5)this.speedSamples.shift()}this.lastBytesTransferred=B,this.lastUpdateTime=Q}this.render()}}incrementFilesCompleted(){this.filesCompleted++}setFilesTotal(D){this.filesTotal=D}setBytesTotal(D){this.bytesTotal=D}getPercent(){let D=this.totalBytesTransferred+this.inFlightBytes();if(this.bytesTotal>0)return Math.min(100,Math.round(D/this.bytesTotal*100));if(this.filesTotal>0)return Math.min(100,Math.round(this.filesCompleted/this.filesTotal*100));return null}getProgress(){return{filesCompleted:this.filesCompleted,filesTotal:this.filesTotal,bytesTransferred:this.totalBytesTransferred+this.inFlightBytes(),bytesTotal:this.bytesTotal,currentFile:this.currentFile||void 0}}render(){let D=this.speedSamples.length>0?this.speedSamples.reduce((B,X)=>B+X,0)/this.speedSamples.length:0,F=this.totalBytesTransferred+this.inFlightBytes(),$=0,J=!1;if(this.bytesTotal>0)$=Math.min(100,Math.round(F/this.bytesTotal*100)),J=!0;else if(this.filesTotal>0)$=Math.min(100,Math.round(this.filesCompleted/this.filesTotal*100)),J=!0;let Q=this.filesTotal>0?`${this.filesCompleted}/${this.filesTotal} files`:`${this.filesCompleted} files`,Y;if(J)Y=`${XV0($)} ${$}% ${Q}`;else Y=Q;if(F>0){let B=this.bytesTotal>0?`${YD(F)}/${YD(this.bytesTotal)}`:YD(F);Y+=` | ${B}`}if(D>0)Y+=` | ${tg(D)}`;if(D>0){let B=0;if(this.bytesTotal>0)B=Math.max(0,this.bytesTotal-F);else for(let X of this.inFlight.values())if(X.total>X.transferred)B+=X.total-X.transferred;if(B>0){let X=B/D;if(X>0)Y+=` | ETA ${BV0(X)}`}}if(Y!==this.lastRenderedLine)process.stderr.write(`\r${W.cyan(Y)}${" ".repeat(10)}`),this.lastRenderedLine=Y}finish(D){let F=(Date.now()-this.startTime)/1000;if(process.stderr.write(`\r${" ".repeat(this.lastRenderedLine.length+15)}\r`),D>0){let $=F>0?`${tg(this.totalBytesTransferred/F)}`:"",J=[`${D} file${D!==1?"s":""} downloaded`,this.totalBytesTransferred>0?YD(this.totalBytesTransferred):"",$].filter(Boolean).join(" | ");process.stderr.write(`${W.green(J)}
|
|
100
100
|
`)}}}var pW=S(()=>{ND()});var Kh={};r6(Kh,{verifyGitHubAuth:()=>_9,toS3Credentials:()=>PD,switchBranch:()=>UV0,setKeyPresent:()=>qh,selectAnnexS3Remote:()=>tW,saveDataset:()=>a8,runCommand:()=>T,resolveUpstreamRef:()=>BH,resolveGitHubCloneAuth:()=>Wh,readRemoteHeadDatasetVersion:()=>YH,readLocalDatasetVersion:()=>QH,pushToGitHub:()=>R1,pushBranch:()=>SF,markInheritedOpenNeuroRemotesIgnored:()=>rW,listDatasetVersions:()=>DH,isWorkingTreeDirty:()=>XH,isGitAnnexDataset:()=>N1,isDataladDataset:()=>RV0,initOrEnableSpecialRemote:()=>Xh,initDataset:()=>n6,githubTokenCredentialHelper:()=>Gh,gitMergeFastForward:()=>WH,gitFetchOrigin:()=>GH,gitAnnexAdd:()=>i6,getVersionCommit:()=>FH,getRemoteUuid:()=>ZQ,getLocalDatasetInfo:()=>eW,getKeyHashDirs:()=>MV0,getKeyHashDir:()=>Hh,getDatasetStats:()=>EV0,getDatasetIdFromRemote:()=>s8,getDatasetData:()=>VQ,getCurrentBranch:()=>o8,getAnnexWhereisAll:()=>KH,getAnnexS3Remotes:()=>g9,formatBytes:()=>YD,ensureLocalMainBranch:()=>h9,ensureGitAnnexInitialized:()=>aW,enableS3Remote:()=>h4,dropUnusedAnnexObjects:()=>HH,dropFiles:()=>sW,detectImportMarker:()=>EQ,createRevertBranch:()=>$H,createDataladDataset:()=>NV0,countPendingDownload:()=>zQ,copyToAnnexRemote:()=>C8,configureS3Remote:()=>o1,configureLargefiles:()=>g4,configureGitHubRemote:()=>i8,commitRevert:()=>JH,collectFileManifest:()=>qH,cloneDataset:()=>C1,clearAnnexCredentials:()=>ID,checkPrerequisites:()=>x9,checkGitHubSSH:()=>Jh,checkGitAnnexInstalled:()=>iW,checkDownloadPrerequisites:()=>IF,checkAWSCredentials:()=>qV0,batchSetKeysPresent:()=>zH,awsCredentialEnv:()=>KQ,annexRemoteExists:()=>Bh,acceptGitHubInvitation:()=>f9,NEMAR_S3_REMOTE_NAME:()=>qQ,ANNEX_REMOTE_EXISTS_RE:()=>Yh});import{existsSync as cW,readFileSync as GV0,statSync as WV0}from"fs";import{join as nW}from"path";var{spawn:$h}=globalThis.Bun;async function T(D,F={}){let $={...process.env,GIT_TERMINAL_PROMPT:"0",...F.env};for(let H of F.unsetEnv??[])delete $[H];let J=$h({cmd:D,cwd:F.cwd,stdout:"pipe",stderr:"pipe",env:$}),Q=!1,Y;if(F.timeout)Y=setTimeout(()=>{Q=!0,J.kill()},F.timeout);if(lW()){let H=F.cwd?` (cwd=${F.cwd})`:"";y9(W.dim(`$ ${D.join(" ")}${H}`))}let B=await new Response(J.stdout).text(),X=await new Response(J.stderr).text(),G=await J.exited;if(Y)clearTimeout(Y);if(lW()){if(B.trim())y9(W.dim(B.trimEnd()));if(X.trim())y9(W.yellow(X.trimEnd()));y9(W.dim(`(exit ${G})`))}if(Q)return{stdout:B,stderr:X||`Command timed out after ${Math.round(F.timeout/1000)}s`,exitCode:G??1};return{stdout:B,stderr:X,exitCode:G}}function eg(D){return D.split(".").map((F)=>{let $=Number.parseInt(F.replace(/[^0-9]/g,""),10);return Number.isNaN($)?0:$})}function HV0(D,F){let $=eg(D),J=eg(F);for(let Q=0;Q<Math.max($.length,J.length);Q++){let Y=$[Q]||0,B=J[Q]||0;if(Y>B)return!0;if(Y<B)return!1}return!0}async function iW(){try{let{stdout:F,exitCode:$,stderr:J}=await T(["git-annex","version"]);if($!==0)return console.warn("git-annex version returned non-zero exit code:",$),console.warn("stderr:",J),{installed:!1,minVersion:"10.0",error:`Version check failed: ${J.trim()}`};let Q=F.match(/version:\s*(\d+\.\d+)/),Y=Q?Q[1]:void 0;if(!Y)console.warn("Could not parse git-annex version from output:",F);return{installed:!0,version:Y,minVersion:"10.0",compatible:Y?HV0(Y,"10.0"):void 0}}catch(F){let $=F instanceof Error?F.message:String(F);if($.includes("ENOENT")||$.includes("not found"))return console.info("git-annex not found in PATH"),{installed:!1,minVersion:"10.0"};return console.error("Error checking git-annex installation:",$),{installed:!1,minVersion:"10.0",error:$}}}async function Jh(){if(process.env.GH_TOKEN)return{accessible:!0,username:"token-auth",useHttps:!0};try{let{stdout:D,stderr:F}=await T(["ssh","-T","-o","BatchMode=yes","-o","StrictHostKeyChecking=accept-new","-o","ConnectTimeout=10","git@github.com"]),$=D+F,J=$.match(/Hi ([^!]+)!/);if(J)return{accessible:!0,username:J[1]};if($.includes("Permission denied"))return{accessible:!1};return{accessible:$.includes("successfully authenticated")}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("SSH command not found");else console.error("Error checking GitHub SSH access:",F);return{accessible:!1}}}async function qV0(){if(process.env.AWS_ACCESS_KEY_ID&&process.env.AWS_SECRET_ACCESS_KEY)return{configured:!0,source:"environment"};try{let{stdout:D,exitCode:F}=await T(["aws","configure","get","aws_access_key_id"]);if(F===0&&D.trim())return{configured:!0,source:"aws-cli"}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("AWS CLI not found in PATH");else console.error("Error checking AWS credentials:",F)}return{configured:!1}}function Qh(){let D=process.platform;if(D==="darwin")return"brew install git-annex";if(D==="linux")return"apt install git-annex (Debian/Ubuntu)";return"See https://git-annex.branchable.com/install/"}async function x9(){let[D,F]=await Promise.all([iW(),Jh()]),$=[];if(!D.installed)$.push(`git-annex is not installed. Install: ${Qh()}`);else if(D.compatible===!1)$.push(`git-annex version ${D.version} is too old. Required: >= ${D.minVersion}`);if(!F.accessible){if(!(await oW()).token)$.push("GitHub authentication not configured. Run 'gh auth login' to authenticate.")}return{gitAnnex:D,githubSSH:F,allPassed:$.length===0,errors:$}}async function N1(D){if(!cW(nW(D,".git")))return!1;try{let{exitCode:F}=await T(["git","annex","info"],{cwd:D});return F===0}catch(F){let $=F instanceof Error?F.message:String(F);if(!$.includes("ENOENT")&&!$.includes("not found"))console.error(`Error checking if ${D} is a git-annex dataset:`,$);return!1}}async function n6(D,F={}){if(!F.force&&await N1(D))return{success:!0};try{let $={};if(F.author)$.GIT_AUTHOR_NAME=F.author.name,$.GIT_AUTHOR_EMAIL=F.author.email,$.GIT_COMMITTER_NAME=F.author.name,$.GIT_COMMITTER_EMAIL=F.author.email;let{stderr:J,exitCode:Q}=await T(["git","init","-b","main",D],{...Object.keys($).length>0?{env:$}:{}});if(Q!==0)return{success:!1,error:J.trim()||"Failed to initialize git repository"};let Y=Object.keys($).length>0?{env:$}:{},{stderr:B,exitCode:X}=await T(["git","annex","init"],{cwd:D,...Y});if(X!==0)return{success:!1,error:B.trim()||"Failed to initialize git-annex"};let{stderr:G,exitCode:H}=await T(["git","commit","--allow-empty","-m","Initialize dataset"],{cwd:D,...Y});if(H!==0)return{success:!1,error:G.trim()||"Failed to create initial commit"};let{stderr:q,exitCode:K}=await T(["git","annex","adjust","--unlock"],{cwd:D,...Y});if(K!==0)return{success:!1,error:q.trim()||"Failed to switch to unlocked mode"};return{success:!0}}catch($){return{success:!1,error:$.message}}}async function aW(D){try{let{exitCode:F,stderr:$}=await T(["git","annex","info"],{cwd:D});if(F===0)return{success:!0};if($.includes("First run: git-annex init")){let{stderr:J,exitCode:Q}=await T(["git","annex","init"],{cwd:D});if(Q!==0)return{success:!1,error:J.trim()||"Failed to initialize git-annex"};return{success:!0}}return{success:!1,error:$.trim()||"Failed to check git-annex status"}}catch(F){return{success:!1,error:F.message}}}async function g4(D,F){let $=["*.edf","*.bdf","*.set","*.fif","*.vhdr","*.eeg","*.cnt","*.fdt"],J=["*.tsv","*.json","*.md","*.txt","*.yml","*.yaml","README*","LICENSE*","CHANGES*",".bidsignore",".gitignore"],Q=$.map((G)=>`include=${G}`).join(" or "),Y=J.map((G)=>`exclude=${G}`).join(" and "),B=`(${Q} or largerthan=100kb) and ${Y}`,X=F||B;try{let{stderr:G,exitCode:H}=await T(["git","annex","config","--set","annex.largefiles",X],{cwd:D});if(H!==0)return{success:!1,error:G.trim()||"Failed to configure largefiles"};return{success:!0}}catch(G){return{success:!1,error:G.message}}}async function i6(D,F="."){try{let{stderr:$,exitCode:J}=await T(["git","annex","add",F],{cwd:D});if(J!==0)return{success:!1,error:$.trim()||"Failed to add files to git-annex"};return{success:!0}}catch($){return{success:!1,error:$.message}}}function PD(D){return{accessKeyId:D.access_key_id,secretAccessKey:D.secret_access_key,sessionToken:D.session_token}}function dW(D){let F=[/^\(merging .* into .*\.\.\.\)$/,/^\(recording state in git\.\.\.\)$/,/^\(scanning for /,/^\(checking /];return D.split(`
|
|
101
101
|
`).filter(($)=>{let J=$.trim();if(!J)return!1;if(J.includes("setting annex-ignore"))return!1;if(F.some((Q)=>Q.test(J)))return!1;return!0}).join(`
|
package/package.json
CHANGED