nemar-cli 0.8.27-dev.1065 → 0.8.27-dev.1066
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +2 -2
- package/package.json +1 -1
package/dist/index.js
CHANGED
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@@ -95,7 +95,7 @@ ${W.dim(`eta: ${D.eta}`)}`:"";process.stderr.write(`${F}
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${$} ${D.message}
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`)}var Rf=!1;var wW=I(()=>{vD()});var Of;var Cf=I(()=>{Of={name:"nemar-cli",version:"0.8.27-dev.1066",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build","docs:generate":"bun run scripts/generate-docs.ts","docs:serve":"mkdocs serve","docs:build":"mkdocs build",prepare:"husky",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://nemar-cli.pages.dev",engines:{bun:">=1.0.0"},files:["dist","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1","fuse.js":"^7.1.0",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},devDependencies:{"@biomejs/biome":"1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var g4;var eJ=I(()=>{Cf();g4=Of.version});function O0(D){if(D instanceof Error)return D.message;return String(D)}function wf(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(TW)return jW;return YD().apiUrl||jW}async function b(D,F={},$=!1){let J=`${wf()}${D}`,Q={"Content-Type":"application/json","X-CLI-Version":g4,...F.headers};if($){let X=YD();if(!X.apiKey&&$===!0)throw new h(401,"Not authenticated. 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`)}}}var fW=I(()=>{vD()});var yg={};i4(yg,{verifyGitHubAuth:()=>f9,toS3Credentials:()=>RD,switchBranch:()=>CE0,setKeyPresent:()=>vg,selectAnnexS3Remote:()=>dW,saveDataset:()=>o8,runCommand:()=>S,resolveUpstreamRef:()=>tW,readRemoteHeadDatasetVersion:()=>rW,readLocalDatasetVersion:()=>sW,pushToGitHub:()=>a1,pushBranch:()=>kF,markInheritedOpenNeuroRemotesIgnored:()=>pW,listDatasetVersions:()=>nW,isWorkingTreeDirty:()=>eW,isGitAnnexDataset:()=>R1,isDataladDataset:()=>PE0,initOrEnableSpecialRemote:()=>Ig,initDataset:()=>a6,gitMergeFastForward:()=>FH,gitFetchOrigin:()=>DH,gitAnnexAdd:()=>o6,getVersionCommit:()=>iW,getRemoteUuid:()=>YH,getLocalDatasetInfo:()=>cW,getKeyHashDirs:()=>jE0,getKeyHashDir:()=>kg,getDatasetStats:()=>ME0,getDatasetIdFromRemote:()=>r8,getDatasetData:()=>VQ,getCurrentBranch:()=>s8,getAnnexWhereisAll:()=>QH,getAnnexS3Remotes:()=>h9,formatBytes:()=>XD,ensureLocalMainBranch:()=>b9,ensureGitAnnexInitialized:()=>mW,enableS3Remote:()=>u4,dropUnusedAnnexObjects:()=>$H,dropFiles:()=>lW,detectImportMarker:()=>EQ,createRevertBranch:()=>aW,createDataladDataset:()=>TE0,countPendingDownload:()=>zQ,copyToAnnexRemote:()=>w8,configureS3Remote:()=>O8,configureLargefiles:()=>b4,configureGitHubRemote:()=>a8,commitRevert:()=>oW,collectFileManifest:()=>JH,cloneDataset:()=>o1,clearAnnexCredentials:()=>SD,checkPrerequisites:()=>_9,checkGitHubSSH:()=>wg,checkGitAnnexInstalled:()=>uW,checkDownloadPrerequisites:()=>SF,checkAWSCredentials:()=>UE0,batchSetKeysPresent:()=>BH,annexRemoteExists:()=>Pg,acceptGitHubInvitation:()=>g9,NEMAR_S3_REMOTE_NAME:()=>KQ,ANNEX_REMOTE_EXISTS_RE:()=>Tg});import{existsSync as hW,readFileSync as EE0,statSync as VE0}from"fs";import{join as bW}from"path";var{spawn:Og}=globalThis.Bun;async function S(D,F={}){let $=Og({cmd:D,cwd:F.cwd,stdout:"pipe",stderr:"pipe",env:{...process.env,GIT_TERMINAL_PROMPT:"0",...F.env}}),J=!1,Q;if(F.timeout)Q=setTimeout(()=>{J=!0,$.kill()},F.timeout);if(_W()){let G=F.cwd?` (cwd=${F.cwd})`:"";x9(W.dim(`$ ${D.join(" ")}${G}`))}let Y=await new Response($.stdout).text(),B=await new Response($.stderr).text(),X=await $.exited;if(Q)clearTimeout(Q);if(_W()){if(Y.trim())x9(W.dim(Y.trimEnd()));if(B.trim())x9(W.yellow(B.trimEnd()));x9(W.dim(`(exit ${X})`))}if(J)return{stdout:Y,stderr:B||`Command timed out after ${Math.round(F.timeout/1000)}s`,exitCode:X??1};return{stdout:Y,stderr:B,exitCode:X}}function Ng(D){return D.split(".").map((F)=>{let $=Number.parseInt(F.replace(/[^0-9]/g,""),10);return Number.isNaN($)?0:$})}function ZE0(D,F){let $=Ng(D),J=Ng(F);for(let Q=0;Q<Math.max($.length,J.length);Q++){let Y=$[Q]||0,B=J[Q]||0;if(Y>B)return!0;if(Y<B)return!1}return!0}async function uW(){try{let{stdout:F,exitCode:$,stderr:J}=await S(["git-annex","version"]);if($!==0)return console.warn("git-annex version returned non-zero exit code:",$),console.warn("stderr:",J),{installed:!1,minVersion:"10.0",error:`Version check failed: ${J.trim()}`};let Q=F.match(/version:\s*(\d+\.\d+)/),Y=Q?Q[1]:void 0;if(!Y)console.warn("Could not parse git-annex version from output:",F);return{installed:!0,version:Y,minVersion:"10.0",compatible:Y?ZE0(Y,"10.0"):void 0}}catch(F){let $=F instanceof Error?F.message:String(F);if($.includes("ENOENT")||$.includes("not found"))return console.info("git-annex not found in PATH"),{installed:!1,minVersion:"10.0"};return console.error("Error checking git-annex installation:",$),{installed:!1,minVersion:"10.0",error:$}}}async function wg(){if(process.env.GH_TOKEN)return{accessible:!0,username:"token-auth",useHttps:!0};try{let{stdout:D,stderr:F}=await S(["ssh","-T","-o","BatchMode=yes","-o","StrictHostKeyChecking=accept-new","-o","ConnectTimeout=10","git@github.com"]),$=D+F,J=$.match(/Hi ([^!]+)!/);if(J)return{accessible:!0,username:J[1]};if($.includes("Permission denied"))return{accessible:!1};return{accessible:$.includes("successfully authenticated")}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("SSH command not found");else console.error("Error checking GitHub SSH access:",F);return{accessible:!1}}}async function UE0(){if(process.env.AWS_ACCESS_KEY_ID&&process.env.AWS_SECRET_ACCESS_KEY)return{configured:!0,source:"environment"};try{let{stdout:D,exitCode:F}=await S(["aws","configure","get","aws_access_key_id"]);if(F===0&&D.trim())return{configured:!0,source:"aws-cli"}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("AWS CLI not found in PATH");else console.error("Error checking AWS credentials:",F)}return{configured:!1}}function jg(){let D=process.platform;if(D==="darwin")return"brew install git-annex";if(D==="linux")return"apt install git-annex (Debian/Ubuntu)";return"See https://git-annex.branchable.com/install/"}async function _9(){let[D,F]=await Promise.all([uW(),wg()]),$=[];if(!D.installed)$.push(`git-annex is not installed. 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`).filter(($)=>{let J=$.trim();if(!J)return!1;if(J.includes("setting annex-ignore"))return!1;if(F.some((Q)=>Q.test(J)))return!1;return!0}).join(`
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@@ -383,7 +383,7 @@ NEMAR E2E Test (nm099999)
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Upload dir: ${$.upload_dir}`)),console.log(W.dim(`Clone dir: ${$.clone_dir}`));process.exit($.passed?0:1)});var VH=new i0("sync").description("Sync dataset metadata to nemar.org datapipeline");VH.command("run").description("Sync a dataset to nemar.org").argument("<dataset-id>","Dataset ID (e.g., nm000103)").action(async(D)=>{if(!y0())return;let F=C(`Syncing ${D} to nemar.org...`).start();try{let $=await Wg(D);if($.synced)F.succeed(`${D} synced to nemar.org`);else{F.warn(`${D} sync completed with errors:`);for(let J of $.errors)console.log(W.red(` - ${J}`))}}catch($){F.fail(`Failed to sync ${D}`),console.error(W.red(O0($)))}});VH.command("status").description("Show nemar.org sync status for all published datasets").action(async()=>{if(!y0())return;let D=C("Fetching sync status...").start();try{let F=await Hg();if(D.stop(),console.log(W.bold(`
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nemar.org Sync Status (${F.total} datasets)
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`)),console.log(` Synced: ${W.green(F.synced)} Failed: ${W.red(F.failed)} Pending: ${W.yellow(F.pending)}
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-
`),F.datasets.length===0){console.log(W.dim(" No published datasets found."));return}console.log(W.dim(` ${"ID".padEnd(12)} ${"Name".padEnd(40)} ${"Status".padEnd(10)} ${"Last Sync".padEnd(20)}`)),console.log(W.dim(` ${"\u2500".repeat(85)}`));for(let $ of F.datasets){let J=$.nemar_sync_status||"pending",Q=J==="synced"?W.green:J==="failed"?W.red:W.yellow,Y=$.nemar_sync_at?new Date($.nemar_sync_at).toLocaleDateString():"-",B=$.name||$.dataset_id,X=B.length>38?`${B.substring(0,35)}...`:B;if(console.log(` ${$.dataset_id.padEnd(12)} ${X.padEnd(40)} ${Q(J.padEnd(10))} ${Y}`),$.nemar_sync_error)console.log(W.red(` Error: ${$.nemar_sync_error}`))}}catch(F){D.fail("Failed to fetch sync status"),console.error(W.red(O0(F)))}});r0.addCommand(VH);function eg(D,F){let $=D.enrichment.status,J=$==="ok"?W.green("enrich:ok"):$==="failed"?W.red("enrich:failed"):W.dim("enrich:skipped"),Q=D.sync.status,Y=Q==="ok"?W.green("sync:ok"):Q==="failed"?W.red("sync:failed"):W.dim("sync:skipped"),B=D.sync.metadata_columns_written===!0?W.green("cols:written"):D.sync.metadata_columns_error?W.red("cols:failed"):"",X=F?.showRef&&D.enrichment.ref?W.dim(`@${D.enrichment.ref}`):"";if(console.log(` ${D.dataset_id.padEnd(12)} ${J}${X} ${Y} ${B}`),D.enrichment.error)console.log(W.red(` enrichment: ${D.enrichment.error}`));if(D.sync.errors?.length)for(let G of D.sync.errors)console.log(W.red(` sync: ${G}`));if(D.sync.metadata_columns_error)console.log(W.red(` metadata columns: ${D.sync.metadata_columns_error}`))}var Jh=new i0("reindex").description("Refresh dataset metadata: enrichment + nemar.org sync + first-class D1 columns");Jh.argument("[dataset-id]","Dataset ID to reindex (e.g., nm000103)").option("--all","Reindex every dataset with a GitHub repo").option("--missing-metadata","Reindex only datasets with NULL metadata columns").option("--stale","Reindex only datasets whose metadata is older than --older-than days").option("--older-than <days>","Threshold for --stale (default: 30)","30").option("--skip-enrichment","Skip the LLM enrichment step").option("--skip-sync","Skip the nemar.org sync + D1 column refresh step").option("--ref <ref>","Ref to enrich from (single-dataset only; default: main)").option("--dry-run","List matched datasets without firing the reindex (bulk only)").action(async(D,F)=>{if(!y0())return;let $=[F.all,F.missingMetadata,F.stale].filter(Boolean).length;if(D&&$>0)console.error(W.red("Provide either a dataset-id OR a bulk flag (--all/--missing-metadata/--stale), not both")),process.exit(1);if(!D&&$===0)console.error(W.red("Provide a dataset-id or one of: --all, --missing-metadata, --stale")),process.exit(1);if($>1)console.error(W.red("Use only one of --all, --missing-metadata, --stale")),process.exit(1);if(F.skipEnrichment&&F.skipSync)console.error(W.red("--skip-enrichment and --skip-sync cannot both be set")),process.exit(1);if(D){let K=C(`Reindexing ${D}...`).start();try{let V={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,...F.ref&&{ref:F.ref}},E=await HQ(D,V),Z=E.enrichment.status!=="failed"&&E.sync.status!=="failed";if(Z)K.succeed(`${D} reindexed`);else K.warn(`${D} reindexed with errors`);if(console.log(),eg(E,{showRef:!0}),!Z)process.exit(1)}catch(V){K.fail(`Failed to reindex ${D}`),console.error(W.red(O0(V))),process.exit(1)}return}let J=F.all?"all":F.missingMetadata?"missing-metadata":"stale",Q={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,dry_run:F.dryRun===!0};if(F.olderThan!==void 0){let K=Number.parseInt(F.olderThan,10);if(!Number.isFinite(K)||K<0)console.error(W.red(`Invalid --older-than: "${F.olderThan}"`)),process.exit(1);Q.older_than_days=K}let Y=F.dryRun?`Listing ${J} datasets...`:`Reindexing ${J} datasets...`,B=C(Y).start(),X;try{X=await qg(J,Q)}catch(K){B.fail("Bulk reindex failed"),console.error(W.red(O0(K))),process.exit(1)}if(X.dry_run){if(B.succeed(`${X.total} datasets match filter=${J} (dry run, no changes)`),X.datasets)for(let K of X.datasets)console.log(W.dim(` - ${K}`));return}let G=X.results??[],H=G.filter((K)=>K.enrichment.status!=="failed"&&K.sync.status!=="failed").length,q=G.length-H;if(q===0)B.succeed(`${G.length}/${G.length} datasets reindexed in ${(X.elapsed_ms/1000).toFixed(1)}s`);else B.warn(`${H}/${G.length} ok; ${q} failed in ${(X.elapsed_ms/1000).toFixed(1)}s`);console.log();for(let K of G)eg(K);if(q>0)process.exit(1)});r0.addCommand(Jh);var ZH=new i0("email-preferences").description("Manage email notification preferences");ZH.command("show").description("Show current email notification preferences").action(async()=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);let D=C("Fetching email preferences...").start();try{let F=await Kg();D.succeed("Email notification preferences:"),console.log();let $=[{key:"user_approval",label:"User approval notifications"},{key:"publication_request",label:"Publication request notifications"},{key:"announcements",label:"Announcement emails"}];for(let J of $){let Y=F[J.key]?W.green("enabled"):W.dim("disabled");console.log(` ${J.label.padEnd(40)} ${Y}`)}console.log(),console.log(W.dim(" Use 'nemar admin email-preferences update' to change settings."))}catch(F){D.fail("Failed to fetch preferences"),console.error(W.red(O0(F)))}});ZH.command("update").description("Update email notification preferences").option("--user-approval <bool>","Enable/disable user approval notifications").option("--publication-request <bool>","Enable/disable publication request notifications").option("--announcements <bool>","Enable/disable announcement emails").option("--all <bool>","Enable/disable all notifications").action(async(D)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);function F(Q){if(Q===void 0)return;let Y=Q.toLowerCase();if(Y==="true"||Y==="1"||Y==="on"||Y==="yes")return!0;if(Y==="false"||Y==="0"||Y==="off"||Y==="no")return!1;console.error(W.red(`Invalid boolean value: "${Q}". Use true/false, on/off, yes/no.`)),process.exit(1)}let $={};if(D.all!==void 0){let Q=F(D.all);$.user_approval=Q,$.publication_request=Q,$.announcements=Q}else{let Q=F(D.userApproval),Y=F(D.publicationRequest),B=F(D.announcements);if(Q===void 0&&Y===void 0&&B===void 0)console.error(W.red("No preferences specified.")),console.log(" --user-approval <bool> User approval notifications"),console.log(" --publication-request <bool> Publication request notifications"),console.log(" --announcements <bool> Announcement emails"),console.log(" --all <bool> All notifications"),process.exit(1);if(Q!==void 0)$.user_approval=Q;if(Y!==void 0)$.publication_request=Y;if(B!==void 0)$.announcements=B}let J=C("Updating email preferences...").start();try{let Q=await zg($);J.succeed("Email preferences updated:"),console.log(),console.log(` User approval: ${Q.user_approval?W.green("enabled"):W.dim("disabled")}`),console.log(` Publication request: ${Q.publication_request?W.green("enabled"):W.dim("disabled")}`),console.log(` Announcements: ${Q.announcements?W.green("enabled"):W.dim("disabled")}`)}catch(Q){J.fail("Failed to update preferences"),console.error(W.red(O0(Q)))}});r0.addCommand(ZH);var UQ=new i0("notice").description("Manage system notices displayed to CLI users");UQ.command("list").description("List all notices (including expired)").action(async()=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);let D=C("Fetching notices...").start();try{let{notices:F}=await Vg();if(F.length===0){D.succeed("No notices found.");return}D.succeed(`${F.length} notice(s):`),console.log();for(let $ of F){let Q={critical:W.red.bold,warning:W.yellow,info:W.blue}[$.level]||W.white,Y=$.expires_at&&new Date($.expires_at)<new Date?W.dim(" (expired)"):"";if(console.log(` ${W.dim(`#${$.id}`)} ${Q(`[${$.level.toUpperCase()}]`)} ${W.dim(`scope:${$.scope}`)}${Y}`),console.log(` ${$.message}`),console.log(` ${W.dim(`Created: ${$.created_at}`)}`),$.expires_at)console.log(` ${W.dim(`Expires: ${$.expires_at}`)}`);console.log()}}catch(F){FD(F,D,"Failed to fetch notices")}});UQ.command("set").description("Create a new system notice").requiredOption("-m, --message <text>","Notice message text").option("-l, --level <level>","Notice level: info, warning, critical","info").option("-s, --scope <scope>","Target scope: all, admins, members","all").option("-e, --expires <datetime>","Expiry datetime (ISO 8601)").action(async(D)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(!["info","warning","critical"].includes(D.level))console.error(W.red(`Invalid level: ${D.level}. Use info, warning, or critical.`)),process.exit(1);if(!["all","admins","members"].includes(D.scope))console.error(W.red(`Invalid scope: ${D.scope}. Use all, admins, or members.`)),process.exit(1);let F=C("Creating notice...").start();try{let $=await Zg({message:D.message,level:D.level,scope:D.scope,expires_at:D.expires});if(F.succeed(`Notice created (ID: ${$.id})`),console.log(` Level: ${$.level}`),console.log(` Scope: ${$.scope}`),console.log(` Message: ${$.message}`),$.expires_at)console.log(` Expires: ${$.expires_at}`)}catch($){FD($,F,"Failed to create notice")}});UQ.command("clear <id>").description("Delete a notice by ID").option(w0,j0).option(g0,v0).action(async(D,F)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);let $=Number.parseInt(D,10);if(Number.isNaN($))console.error(W.red("Invalid notice ID")),process.exit(1);if(!await S0(`Delete notice #${$}?`,F,!1))return;let Q=C("Deleting notice...").start();try{await Ug($),Q.succeed(`Notice #${$} deleted`)}catch(Y){FD(Y,Q,"Failed to delete notice")}});r0.addCommand(UQ);r0.command("notify").description("Send an email to a group or a single user").option("--to <group>","Recipient group: all, admins, members").option("--user <username>","Send to a single user by username").requiredOption("--subject <text>","Email subject line").option("--body <text>","Email body (markdown)").option("--body-file <path>","Read email body from file (markdown)").option("--dry-run","Preview recipients without sending").option(w0,j0).option(g0,v0).action(async(D)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(D.to&&D.user)console.error(W.red("--to and --user are mutually exclusive. Provide exactly one.")),process.exit(1);if(!D.to&&!D.user)console.error(W.red("Provide either --to <group> or --user <username>.")),process.exit(1);if(D.to&&!["all","admins","members"].includes(D.to))console.error(W.red(`Invalid group: ${D.to}. Use all, admins, or members.`)),process.exit(1);let F;if(D.bodyFile){if(!Dh(D.bodyFile))console.error(W.red(`File not found: ${D.bodyFile}`)),process.exit(1);F=oE0(D.bodyFile,"utf-8")}else if(D.body)F=D.body;else console.error(W.red("Email body required. Use --body or --body-file.")),process.exit(1);let $=D.user?`user:${D.user}`:D.to,J=D.user?{user:D.user,subject:D.subject,body:F}:{to:D.to,subject:D.subject,body:F};if(D.dryRun){let X=C("Checking recipients...").start();try{let G=await yW({...J,dry_run:!0});if("dry_run"in G){X.succeed(`Dry run: ${G.recipient_count} recipient(s) for "${G.recipient_group}"`),console.log();for(let H of G.recipients)console.log(` ${H}`)}}catch(G){FD(G,X,"Failed to check recipients")}return}console.log(W.bold("Email preview:")),console.log(` To: ${W.cyan($)}`),console.log(` Subject: ${D.subject}`),console.log(` Body: ${F.length>100?`${F.substring(0,100)}...`:F}`),console.log();let Q=D.user?`Send this email to ${D.user}?`:"Send this broadcast email?";if(!await S0(Q,D,!1))return;let B=C(D.user?`Sending to ${D.user}...`:"Sending broadcast...").start();try{let X=await yW(J);if("broadcast_id"in X)if(X.failure_count>0){B.warn(`Email send: ${X.recipient_count} delivered, ${X.failure_count} failed`);for(let G of X.failed_recipients)console.log(W.red(` Failed: ${G}`))}else{let G=D.user?`Email sent to ${D.user}`:`Broadcast sent to ${X.recipient_count} recipient(s)`;B.succeed(`${G} (ID: ${X.broadcast_id})`)}}catch(X){FD(X,B,"Failed to send email")}});vD();y6();a3();i8();f4();import{appendFileSync as tE0,existsSync as t6,mkdirSync as Qh,readFileSync as AQ,writeFileSync as eE0}from"fs";import{homedir as DV0}from"os";import{join as LQ}from"path";var{spawn:Yh}=globalThis.Bun;function l4(){let D=LQ(DV0(),".ssh");return{sshDir:D,privateKey:LQ(D,"nemar_ed25519"),publicKey:LQ(D,"nemar_ed25519.pub"),configFile:LQ(D,"config")}}function Bh(){let D=l4();return t6(D.privateKey)&&t6(D.publicKey)}async function Xh(D){let F=l4();if(!t6(F.sshDir))try{Qh(F.sshDir,{mode:448})}catch($){return{success:!1,error:`Cannot create ~/.ssh directory: ${$.message}`}}if(t6(F.privateKey))try{return{success:!0,publicKey:AQ(F.publicKey,"utf-8").trim()}}catch($){return{success:!1,error:`NEMAR SSH key exists but cannot read public key: ${$.message}`}}try{let $=Yh({cmd:["ssh-keygen","-t","ed25519","-f",F.privateKey,"-N","","-C",`nemar-cli-${D}`],stdout:"pipe",stderr:"pipe"}),J=await new Response($.stderr).text();if(await $.exited!==0)return{success:!1,error:`ssh-keygen failed: ${J}`};return{success:!0,publicKey:AQ(F.publicKey,"utf-8").trim()}}catch($){return{success:!1,error:`Failed to generate SSH key: ${$.message}`}}}function Gh(){let D=l4();if(!t6(D.publicKey))return null;try{return AQ(D.publicKey,"utf-8").trim()}catch{return null}}function FV0(){let D=l4();if(!t6(D.configFile))return!1;try{let F=AQ(D.configFile,"utf-8");return F.includes("IdentityFile ~/.ssh/nemar_ed25519")||F.includes(`IdentityFile ${D.privateKey}`)}catch{return!1}}function Wh(){let D=l4();if(!t6(D.sshDir))try{Qh(D.sshDir,{mode:448})}catch($){return{success:!1,error:`Cannot create ~/.ssh directory: ${$.message}`}}if(FV0())return{success:!0};let F=`
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`),F.datasets.length===0){console.log(W.dim(" No published datasets found."));return}console.log(W.dim(` ${"ID".padEnd(12)} ${"Name".padEnd(40)} ${"Status".padEnd(10)} ${"Last Sync".padEnd(20)}`)),console.log(W.dim(` ${"\u2500".repeat(85)}`));for(let $ of F.datasets){let J=$.nemar_sync_status||"pending",Q=J==="synced"?W.green:J==="failed"?W.red:W.yellow,Y=$.nemar_sync_at?new Date($.nemar_sync_at).toLocaleDateString():"-",B=$.name||$.dataset_id,X=B.length>38?`${B.substring(0,35)}...`:B;if(console.log(` ${$.dataset_id.padEnd(12)} ${X.padEnd(40)} ${Q(J.padEnd(10))} ${Y}`),$.nemar_sync_error)console.log(W.red(` Error: ${$.nemar_sync_error}`))}}catch(F){D.fail("Failed to fetch sync status"),console.error(W.red(O0(F)))}});r0.addCommand(VH);function eg(D,F){let $=D.enrichment.status,J=$==="ok"?W.green("enrich:ok"):$==="failed"?W.red("enrich:failed"):W.dim("enrich:skipped"),Q=D.sync.status,Y=Q==="ok"?W.green("sync:ok"):Q==="failed"?W.red("sync:failed"):W.dim("sync:skipped"),B=D.sync.metadata_columns_written===!0?W.green("cols:written"):D.sync.metadata_columns_error?W.red("cols:failed"):"",X=F?.showRef&&D.enrichment.ref?W.dim(`@${D.enrichment.ref}`):"";if(console.log(` ${D.dataset_id.padEnd(12)} ${J}${X} ${Y} ${B}`),D.enrichment.error)console.log(W.red(` enrichment: ${D.enrichment.error}`));if(D.sync.errors?.length)for(let G of D.sync.errors)console.log(W.red(` sync: ${G}`));if(D.sync.metadata_columns_error)console.log(W.red(` metadata columns: ${D.sync.metadata_columns_error}`))}var Jh=new i0("reindex").description("Refresh dataset metadata: enrichment + nemar.org sync + first-class D1 columns");Jh.argument("[dataset-id]","Dataset ID to reindex (e.g., nm000103)").option("--all","Reindex every dataset with a GitHub repo").option("--missing-metadata","Reindex only datasets with NULL metadata columns").option("--stale","Reindex only datasets whose metadata is older than --older-than days").option("--older-than <days>","Threshold in days for --stale (default 30) or --missing-metadata recency guard (default 1 / 24h)","30").option("--skip-enrichment","Skip the LLM enrichment step").option("--skip-sync","Skip the nemar.org sync + D1 column refresh step").option("--ref <ref>","Ref to enrich from (single-dataset only; default: main)").option("--dry-run","List matched datasets without firing the reindex (bulk only)").action(async(D,F)=>{if(!y0())return;let $=[F.all,F.missingMetadata,F.stale].filter(Boolean).length;if(D&&$>0)console.error(W.red("Provide either a dataset-id OR a bulk flag (--all/--missing-metadata/--stale), not both")),process.exit(1);if(!D&&$===0)console.error(W.red("Provide a dataset-id or one of: --all, --missing-metadata, --stale")),process.exit(1);if($>1)console.error(W.red("Use only one of --all, --missing-metadata, --stale")),process.exit(1);if(F.skipEnrichment&&F.skipSync)console.error(W.red("--skip-enrichment and --skip-sync cannot both be set")),process.exit(1);if(D){let K=C(`Reindexing ${D}...`).start();try{let V={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,...F.ref&&{ref:F.ref}},E=await HQ(D,V),Z=E.enrichment.status!=="failed"&&E.sync.status!=="failed";if(Z)K.succeed(`${D} reindexed`);else K.warn(`${D} reindexed with errors`);if(console.log(),eg(E,{showRef:!0}),!Z)process.exit(1)}catch(V){K.fail(`Failed to reindex ${D}`),console.error(W.red(O0(V))),process.exit(1)}return}let J=F.all?"all":F.missingMetadata?"missing-metadata":"stale",Q={skip_enrichment:F.skipEnrichment===!0,skip_sync:F.skipSync===!0,dry_run:F.dryRun===!0};if(F.olderThan!==void 0){let K=Number.parseInt(F.olderThan,10);if(!Number.isFinite(K)||K<0)console.error(W.red(`Invalid --older-than: "${F.olderThan}"`)),process.exit(1);Q.older_than_days=K}let Y=F.dryRun?`Listing ${J} datasets...`:`Reindexing ${J} datasets...`,B=C(Y).start(),X;try{X=await qg(J,Q)}catch(K){B.fail("Bulk reindex failed"),console.error(W.red(O0(K))),process.exit(1)}if(X.dry_run){if(B.succeed(`${X.total} datasets match filter=${J} (dry run, no changes)`),X.datasets)for(let K of X.datasets)console.log(W.dim(` - ${K}`));return}let G=X.results??[],H=G.filter((K)=>K.enrichment.status!=="failed"&&K.sync.status!=="failed").length,q=G.length-H;if(q===0)B.succeed(`${G.length}/${G.length} datasets reindexed in ${(X.elapsed_ms/1000).toFixed(1)}s`);else B.warn(`${H}/${G.length} ok; ${q} failed in ${(X.elapsed_ms/1000).toFixed(1)}s`);console.log();for(let K of G)eg(K);if(q>0)process.exit(1)});r0.addCommand(Jh);var ZH=new i0("email-preferences").description("Manage email notification preferences");ZH.command("show").description("Show current email notification preferences").action(async()=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);let D=C("Fetching email preferences...").start();try{let F=await Kg();D.succeed("Email notification preferences:"),console.log();let $=[{key:"user_approval",label:"User approval notifications"},{key:"publication_request",label:"Publication request notifications"},{key:"announcements",label:"Announcement emails"}];for(let J of $){let Y=F[J.key]?W.green("enabled"):W.dim("disabled");console.log(` ${J.label.padEnd(40)} ${Y}`)}console.log(),console.log(W.dim(" Use 'nemar admin email-preferences update' to change settings."))}catch(F){D.fail("Failed to fetch preferences"),console.error(W.red(O0(F)))}});ZH.command("update").description("Update email notification preferences").option("--user-approval <bool>","Enable/disable user approval notifications").option("--publication-request <bool>","Enable/disable publication request notifications").option("--announcements <bool>","Enable/disable announcement emails").option("--all <bool>","Enable/disable all notifications").action(async(D)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);function F(Q){if(Q===void 0)return;let Y=Q.toLowerCase();if(Y==="true"||Y==="1"||Y==="on"||Y==="yes")return!0;if(Y==="false"||Y==="0"||Y==="off"||Y==="no")return!1;console.error(W.red(`Invalid boolean value: "${Q}". Use true/false, on/off, yes/no.`)),process.exit(1)}let $={};if(D.all!==void 0){let Q=F(D.all);$.user_approval=Q,$.publication_request=Q,$.announcements=Q}else{let Q=F(D.userApproval),Y=F(D.publicationRequest),B=F(D.announcements);if(Q===void 0&&Y===void 0&&B===void 0)console.error(W.red("No preferences specified.")),console.log(" --user-approval <bool> User approval notifications"),console.log(" --publication-request <bool> Publication request notifications"),console.log(" --announcements <bool> Announcement emails"),console.log(" --all <bool> All notifications"),process.exit(1);if(Q!==void 0)$.user_approval=Q;if(Y!==void 0)$.publication_request=Y;if(B!==void 0)$.announcements=B}let J=C("Updating email preferences...").start();try{let Q=await zg($);J.succeed("Email preferences updated:"),console.log(),console.log(` User approval: ${Q.user_approval?W.green("enabled"):W.dim("disabled")}`),console.log(` Publication request: ${Q.publication_request?W.green("enabled"):W.dim("disabled")}`),console.log(` Announcements: ${Q.announcements?W.green("enabled"):W.dim("disabled")}`)}catch(Q){J.fail("Failed to update preferences"),console.error(W.red(O0(Q)))}});r0.addCommand(ZH);var UQ=new i0("notice").description("Manage system notices displayed to CLI users");UQ.command("list").description("List all notices (including expired)").action(async()=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);let D=C("Fetching notices...").start();try{let{notices:F}=await Vg();if(F.length===0){D.succeed("No notices found.");return}D.succeed(`${F.length} notice(s):`),console.log();for(let $ of F){let Q={critical:W.red.bold,warning:W.yellow,info:W.blue}[$.level]||W.white,Y=$.expires_at&&new Date($.expires_at)<new Date?W.dim(" (expired)"):"";if(console.log(` ${W.dim(`#${$.id}`)} ${Q(`[${$.level.toUpperCase()}]`)} ${W.dim(`scope:${$.scope}`)}${Y}`),console.log(` ${$.message}`),console.log(` ${W.dim(`Created: ${$.created_at}`)}`),$.expires_at)console.log(` ${W.dim(`Expires: ${$.expires_at}`)}`);console.log()}}catch(F){FD(F,D,"Failed to fetch notices")}});UQ.command("set").description("Create a new system notice").requiredOption("-m, --message <text>","Notice message text").option("-l, --level <level>","Notice level: info, warning, critical","info").option("-s, --scope <scope>","Target scope: all, admins, members","all").option("-e, --expires <datetime>","Expiry datetime (ISO 8601)").action(async(D)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(!["info","warning","critical"].includes(D.level))console.error(W.red(`Invalid level: ${D.level}. Use info, warning, or critical.`)),process.exit(1);if(!["all","admins","members"].includes(D.scope))console.error(W.red(`Invalid scope: ${D.scope}. Use all, admins, or members.`)),process.exit(1);let F=C("Creating notice...").start();try{let $=await Zg({message:D.message,level:D.level,scope:D.scope,expires_at:D.expires});if(F.succeed(`Notice created (ID: ${$.id})`),console.log(` Level: ${$.level}`),console.log(` Scope: ${$.scope}`),console.log(` Message: ${$.message}`),$.expires_at)console.log(` Expires: ${$.expires_at}`)}catch($){FD($,F,"Failed to create notice")}});UQ.command("clear <id>").description("Delete a notice by ID").option(w0,j0).option(g0,v0).action(async(D,F)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);let $=Number.parseInt(D,10);if(Number.isNaN($))console.error(W.red("Invalid notice ID")),process.exit(1);if(!await S0(`Delete notice #${$}?`,F,!1))return;let Q=C("Deleting notice...").start();try{await Ug($),Q.succeed(`Notice #${$} deleted`)}catch(Y){FD(Y,Q,"Failed to delete notice")}});r0.addCommand(UQ);r0.command("notify").description("Send an email to a group or a single user").option("--to <group>","Recipient group: all, admins, members").option("--user <username>","Send to a single user by username").requiredOption("--subject <text>","Email subject line").option("--body <text>","Email body (markdown)").option("--body-file <path>","Read email body from file (markdown)").option("--dry-run","Preview recipients without sending").option(w0,j0).option(g0,v0).action(async(D)=>{if(!U0())console.error(W.red("Not authenticated. Run: nemar auth login")),process.exit(1);if(D.to&&D.user)console.error(W.red("--to and --user are mutually exclusive. Provide exactly one.")),process.exit(1);if(!D.to&&!D.user)console.error(W.red("Provide either --to <group> or --user <username>.")),process.exit(1);if(D.to&&!["all","admins","members"].includes(D.to))console.error(W.red(`Invalid group: ${D.to}. Use all, admins, or members.`)),process.exit(1);let F;if(D.bodyFile){if(!Dh(D.bodyFile))console.error(W.red(`File not found: ${D.bodyFile}`)),process.exit(1);F=oE0(D.bodyFile,"utf-8")}else if(D.body)F=D.body;else console.error(W.red("Email body required. Use --body or --body-file.")),process.exit(1);let $=D.user?`user:${D.user}`:D.to,J=D.user?{user:D.user,subject:D.subject,body:F}:{to:D.to,subject:D.subject,body:F};if(D.dryRun){let X=C("Checking recipients...").start();try{let G=await yW({...J,dry_run:!0});if("dry_run"in G){X.succeed(`Dry run: ${G.recipient_count} recipient(s) for "${G.recipient_group}"`),console.log();for(let H of G.recipients)console.log(` ${H}`)}}catch(G){FD(G,X,"Failed to check recipients")}return}console.log(W.bold("Email preview:")),console.log(` To: ${W.cyan($)}`),console.log(` Subject: ${D.subject}`),console.log(` Body: ${F.length>100?`${F.substring(0,100)}...`:F}`),console.log();let Q=D.user?`Send this email to ${D.user}?`:"Send this broadcast email?";if(!await S0(Q,D,!1))return;let B=C(D.user?`Sending to ${D.user}...`:"Sending broadcast...").start();try{let X=await yW(J);if("broadcast_id"in X)if(X.failure_count>0){B.warn(`Email send: ${X.recipient_count} delivered, ${X.failure_count} failed`);for(let G of X.failed_recipients)console.log(W.red(` Failed: ${G}`))}else{let G=D.user?`Email sent to ${D.user}`:`Broadcast sent to ${X.recipient_count} recipient(s)`;B.succeed(`${G} (ID: ${X.broadcast_id})`)}}catch(X){FD(X,B,"Failed to send email")}});vD();y6();a3();i8();f4();import{appendFileSync as tE0,existsSync as t6,mkdirSync as Qh,readFileSync as AQ,writeFileSync as eE0}from"fs";import{homedir as DV0}from"os";import{join as LQ}from"path";var{spawn:Yh}=globalThis.Bun;function l4(){let D=LQ(DV0(),".ssh");return{sshDir:D,privateKey:LQ(D,"nemar_ed25519"),publicKey:LQ(D,"nemar_ed25519.pub"),configFile:LQ(D,"config")}}function Bh(){let D=l4();return t6(D.privateKey)&&t6(D.publicKey)}async function Xh(D){let F=l4();if(!t6(F.sshDir))try{Qh(F.sshDir,{mode:448})}catch($){return{success:!1,error:`Cannot create ~/.ssh directory: ${$.message}`}}if(t6(F.privateKey))try{return{success:!0,publicKey:AQ(F.publicKey,"utf-8").trim()}}catch($){return{success:!1,error:`NEMAR SSH key exists but cannot read public key: ${$.message}`}}try{let $=Yh({cmd:["ssh-keygen","-t","ed25519","-f",F.privateKey,"-N","","-C",`nemar-cli-${D}`],stdout:"pipe",stderr:"pipe"}),J=await new Response($.stderr).text();if(await $.exited!==0)return{success:!1,error:`ssh-keygen failed: ${J}`};return{success:!0,publicKey:AQ(F.publicKey,"utf-8").trim()}}catch($){return{success:!1,error:`Failed to generate SSH key: ${$.message}`}}}function Gh(){let D=l4();if(!t6(D.publicKey))return null;try{return AQ(D.publicKey,"utf-8").trim()}catch{return null}}function FV0(){let D=l4();if(!t6(D.configFile))return!1;try{let F=AQ(D.configFile,"utf-8");return F.includes("IdentityFile ~/.ssh/nemar_ed25519")||F.includes(`IdentityFile ${D.privateKey}`)}catch{return!1}}function Wh(){let D=l4();if(!t6(D.sshDir))try{Qh(D.sshDir,{mode:448})}catch($){return{success:!1,error:`Cannot create ~/.ssh directory: ${$.message}`}}if(FV0())return{success:!0};let F=`
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387
387
|
# NEMAR CLI SSH key (auto-generated)
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388
388
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Host github.com
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|
389
389
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AddKeysToAgent yes
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package/package.json
CHANGED