nemar-cli 0.8.21 → 0.8.22-PR541.1dd064b
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +2 -2
- package/package.json +1 -1
package/dist/index.js
CHANGED
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@@ -95,9 +95,9 @@ ${W.dim(`eta: ${D.eta}`)}`:"";process.stderr.write(`${F}
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${$} ${D.message}
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${F}
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`)}}}var fW=I(()=>{vD()});var yg={};i4(yg,{verifyGitHubAuth:()=>f9,toS3Credentials:()=>RD,switchBranch:()=>CE0,setKeyPresent:()=>vg,selectAnnexS3Remote:()=>dW,saveDataset:()=>o8,runCommand:()=>S,resolveUpstreamRef:()=>tW,readRemoteHeadDatasetVersion:()=>rW,readLocalDatasetVersion:()=>sW,pushToGitHub:()=>a1,pushBranch:()=>kF,markInheritedOpenNeuroRemotesIgnored:()=>pW,listDatasetVersions:()=>nW,isWorkingTreeDirty:()=>eW,isGitAnnexDataset:()=>R1,isDataladDataset:()=>PE0,initOrEnableSpecialRemote:()=>Ig,initDataset:()=>a6,gitMergeFastForward:()=>FH,gitFetchOrigin:()=>DH,gitAnnexAdd:()=>o6,getVersionCommit:()=>iW,getRemoteUuid:()=>YH,getLocalDatasetInfo:()=>cW,getKeyHashDirs:()=>jE0,getKeyHashDir:()=>kg,getDatasetStats:()=>ME0,getDatasetIdFromRemote:()=>r8,getDatasetData:()=>VQ,getCurrentBranch:()=>s8,getAnnexWhereisAll:()=>QH,getAnnexS3Remotes:()=>h9,formatBytes:()=>XD,ensureLocalMainBranch:()=>b9,ensureGitAnnexInitialized:()=>mW,enableS3Remote:()=>u4,dropUnusedAnnexObjects:()=>$H,dropFiles:()=>lW,detectImportMarker:()=>EQ,createRevertBranch:()=>aW,createDataladDataset:()=>TE0,countPendingDownload:()=>zQ,copyToAnnexRemote:()=>w8,configureS3Remote:()=>O8,configureLargefiles:()=>b4,configureGitHubRemote:()=>a8,commitRevert:()=>oW,collectFileManifest:()=>JH,cloneDataset:()=>o1,clearAnnexCredentials:()=>SD,checkPrerequisites:()=>_9,checkGitHubSSH:()=>wg,checkGitAnnexInstalled:()=>uW,checkDownloadPrerequisites:()=>SF,checkAWSCredentials:()=>UE0,batchSetKeysPresent:()=>BH,annexRemoteExists:()=>Pg,acceptGitHubInvitation:()=>g9,NEMAR_S3_REMOTE_NAME:()=>KQ,ANNEX_REMOTE_EXISTS_RE:()=>Tg});import{existsSync as hW,readFileSync as EE0,statSync as VE0}from"fs";import{join as bW}from"path";var{spawn:Og}=globalThis.Bun;async function S(D,F={}){let $=Og({cmd:D,cwd:F.cwd,stdout:"pipe",stderr:"pipe",env:{...process.env,GIT_TERMINAL_PROMPT:"0",...F.env}}),J=!1,Q;if(F.timeout)Q=setTimeout(()=>{J=!0,$.kill()},F.timeout);if(_W()){let G=F.cwd?` (cwd=${F.cwd})`:"";x9(W.dim(`$ ${D.join(" ")}${G}`))}let Y=await new Response($.stdout).text(),B=await new Response($.stderr).text(),X=await $.exited;if(Q)clearTimeout(Q);if(_W()){if(Y.trim())x9(W.dim(Y.trimEnd()));if(B.trim())x9(W.yellow(B.trimEnd()));x9(W.dim(`(exit ${X})`))}if(J)return{stdout:Y,stderr:B||`Command timed out after ${Math.round((F.timeout??0)/1000)}s`,exitCode:X??1};return{stdout:Y,stderr:B,exitCode:X}}function Ng(D){return D.split(".").map((F)=>{let $=Number.parseInt(F.replace(/[^0-9]/g,""),10);return Number.isNaN($)?0:$})}function ZE0(D,F){let $=Ng(D),J=Ng(F);for(let Q=0;Q<Math.max($.length,J.length);Q++){let Y=$[Q]||0,B=J[Q]||0;if(Y>B)return!0;if(Y<B)return!1}return!0}async function uW(){try{let{stdout:F,exitCode:$,stderr:J}=await S(["git-annex","version"]);if($!==0)return console.warn("git-annex version returned non-zero exit code:",$),console.warn("stderr:",J),{installed:!1,minVersion:"10.0",error:`Version check failed: ${J.trim()}`};let Q=F.match(/version:\s*(\d+\.\d+)/),Y=Q?Q[1]:void 0;if(!Y)console.warn("Could not parse git-annex version from output:",F);return{installed:!0,version:Y,minVersion:"10.0",compatible:Y?ZE0(Y,"10.0"):void 0}}catch(F){let $=F instanceof Error?F.message:String(F);if($.includes("ENOENT")||$.includes("not found"))return console.info("git-annex not found in PATH"),{installed:!1,minVersion:"10.0"};return console.error("Error checking git-annex installation:",$),{installed:!1,minVersion:"10.0",error:$}}}async function wg(){if(process.env.GH_TOKEN)return{accessible:!0,username:"token-auth",useHttps:!0};try{let{stdout:D,stderr:F}=await S(["ssh","-T","-o","BatchMode=yes","-o","StrictHostKeyChecking=accept-new","-o","ConnectTimeout=10","git@github.com"]),$=D+F,J=$.match(/Hi ([^!]+)!/);if(J)return{accessible:!0,username:J[1]};if($.includes("Permission denied"))return{accessible:!1};return{accessible:$.includes("successfully authenticated")}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("SSH command not found");else console.error("Error checking GitHub SSH access:",F);return{accessible:!1}}}async function UE0(){if(process.env.AWS_ACCESS_KEY_ID&&process.env.AWS_SECRET_ACCESS_KEY)return{configured:!0,source:"environment"};try{let{stdout:D,exitCode:F}=await S(["aws","configure","get","aws_access_key_id"]);if(F===0&&D.trim())return{configured:!0,source:"aws-cli"}}catch(D){let F=D instanceof Error?D.message:String(D);if(F.includes("ENOENT")||F.includes("not found"))console.info("AWS CLI not found in PATH");else console.error("Error checking AWS credentials:",F)}return{configured:!1}}function jg(){let D=process.platform;if(D==="darwin")return"brew install git-annex";if(D==="linux")return"apt install git-annex (Debian/Ubuntu)";return"See https://git-annex.branchable.com/install/"}async function _9(){let[D,F]=await Promise.all([uW(),wg()]),$=[];if(!D.installed)$.push(`git-annex is not installed. 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`).filter(($)=>{let J=$.trim();if(!J)return!1;if(J.includes("setting annex-ignore"))return!1;if(F.some((Q)=>Q.test(J)))return!1;return!0}).join(`
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`).trim()}function LE0(D){let F=["type=S3","encryption=none",`bucket=${D.bucket}`,`fileprefix=${D.prefix.replace(/\/$/,"")}/`,`datacenter=${D.region}`,"signature=v4","autoenable=true","protocol=https"];if(D.publicUrl)F.push(`publicurl=${D.publicUrl}`);return F}async function Pg(D,F){let{stdout:$,exitCode:J}=await S(["git","annex","info",F,"--json"],{cwd:D});if(J!==0)return!1;try{let Q=JSON.parse($);return Q?.success===!0&&typeof Q.uuid==="string"&&Q.uuid.length>0&&Q.remote===F}catch{return!1}}async function Rg(D,F,$,J){let Q=await S(["git","annex","enableremote",F,...$],{cwd:D,env:J});if(Q.exitCode!==0)return{success:!1,error:gW(Q.stderr)||Q.stderr.trim()||`enableremote exited with code ${Q.exitCode}`};return{success:!0}}async function Ig(D,F,$,J){if(await Pg(D,F))return Rg(D,F,$,J);let{stderr:Q,exitCode:Y}=await S(["git","annex","initremote",F,...$],{cwd:D,env:J});if(Y!==0){if(Tg.test(Q))return Rg(D,F,$,J);return{success:!1,error:gW(Q)||Q.trim()||`initremote exited with code ${Y}`}}let B=gW(Q);if(B)console.warn(` Warning during special remote setup: ${B}`);return{success:!0}}async function O8(D,F,$){let J={AWS_ACCESS_KEY_ID:$.accessKeyId,AWS_SECRET_ACCESS_KEY:$.secretAccessKey};if($.sessionToken)J.AWS_SESSION_TOKEN=$.sessionToken;let Q=await S(["git","config","remote.origin.annex-ignore","true"],{cwd:D});if(Q.exitCode!==0)console.warn(`Warning: could not set remote.origin.annex-ignore: ${Q.stderr.trim()}`);try{return await Ig(D,F.name,LE0(F),J)}catch(Y){return{success:!1,error:`S3 remote configuration failed: ${Y instanceof Error?Y.message:String(Y)}`}}}async function SD(D){let{join:F}=await import("path"),{readdirSync:$,unlinkSync:J}=await import("fs"),Q=F(D,".git","annex","creds"),Y;try{Y=$(Q)}catch(B){if(B.code==="ENOENT")return;console.warn(`Warning: Could not read ${Q}: ${B.message}`);return}for(let B of Y)try{J(F(Q,B))}catch(X){console.warn(`Warning: Could not delete ${B}: ${X.message}`)}}async function u4(D,F="nemar-s3",$){try{let J={};if($){if(J.AWS_ACCESS_KEY_ID=$.accessKeyId,J.AWS_SECRET_ACCESS_KEY=$.secretAccessKey,$.sessionToken)J.AWS_SESSION_TOKEN=$.sessionToken}let{stderr:Q,exitCode:Y}=await S(["git","annex","enableremote",F],{cwd:D,...Object.keys(J).length>0&&{env:Object.fromEntries(Object.entries({...process.env,...J}).filter((B)=>B[1]!=null))}});if(Y===0)return{success:!0,enabled:!0};if(Q.includes("there is no special remote named")||Q.includes("not a special remote")||Q.includes("Unknown remote")||Q.includes("not found"))return{success:!0,enabled:!1};return{success:!1,enabled:!1,error:Q.trim()}}catch(J){return{success:!1,enabled:!1,error:J.message}}}async function AE0(){try{let{exitCode:D,stderr:F}=await S(["ssh","-T","-o","BatchMode=yes","-o","ConnectTimeout=5","git@github.com"]),$=F.includes("successfully authenticated");if(!$)console.warn("SSH test to github.com failed:",{exitCode:D,stderr:F.trim().slice(0,500)});return{works:$,error:$?void 0:F.trim().slice(0,500)}}catch(D){let F=D instanceof Error?D.message:String(D);return console.warn("SSH test exception:",F),{works:!1,error:F}}}async function Sg(){try{let{stdout:D,exitCode:F,stderr:$}=await S(["gh","auth","token"]);if(F!==0)return console.warn("gh CLI returned non-zero exit code:",F),console.warn("stderr:",$),{token:null,error:`gh auth token failed: ${$.trim()||"unknown error"}`};if(!D.trim())return console.warn("gh auth token returned empty output"),{token:null,error:"gh CLI returned empty token"};return{token:D.trim()}}catch(D){let F=D instanceof Error?D.message:String(D);if(console.error("Failed to get GitHub token from gh CLI:",F),F.includes("ENOENT")||F.includes("not found"))return{token:null,error:"gh CLI not installed (command not found)"};return{token:null,error:`gh CLI error: ${F}`}}}async function f9(D){try{let{stdout:F,exitCode:$,stderr:J}=await S(["gh","api","user","--jq",".login"]);if($!==0){if(J.includes("not logged in")||J.includes("auth login"))return{authenticated:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};return{authenticated:!1,error:`gh CLI error: ${J.trim()||"unknown error"}`}}let Q=F.trim();if(!Q)return{authenticated:!1,error:"gh CLI returned empty username"};if(D){let Y=Q.toLowerCase()===D.toLowerCase();return{authenticated:!0,username:Q,matches:Y,error:Y?void 0:`gh CLI authenticated as '${Q}', expected '${D}'`}}return{authenticated:!0,username:Q}}catch(F){let $=F instanceof Error?F.message:String(F);if($.includes("ENOENT")||$.includes("not found"))return{authenticated:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{authenticated:!1,error:`Failed to verify gh CLI: ${$}`}}}async function g9(D){if(!/^[a-zA-Z0-9_.-]+\/[a-zA-Z0-9_.-]+$/.test(D))return{accepted:!1,error:`Invalid repository format: ${D}`};let{stdout:F,exitCode:$,stderr:J}=await S(["gh","api","/user/repository_invitations"]);if($!==0){if(J.includes("not logged in")||J.includes("auth login"))return{accepted:!1,error:"gh CLI not authenticated. 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You may need to accept it manually via GitHub.`}}let{exitCode:Y,stderr:B}=await S(["gh","api","--method","PATCH",`/user/repository_invitations/${Q}`]);if(Y!==0)return{accepted:!1,error:`Failed to accept invitation: ${B.trim()||"unknown error"}`};return{accepted:!0}}async function a8(D,F,$="origin"){let J=F;if(process.env.GH_TOKEN&&F.startsWith("git@github.com:")){let Q=process.env.GH_TOKEN.trim();if(!Q||/\s/.test(Q))return{success:!1,error:"GH_TOKEN environment variable is set but appears malformed (empty or contains whitespace)"};J=`https://github.com/${F.replace("git@github.com:","")}`,await S(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${Q}'`],{cwd:D})}else if(F.startsWith("git@github.com:")){let Q=F.replace("git@github.com:",""),Y=await Sg();if(Y.token)J=`https://github.com/${Q}`,await S(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${Y.token}'`],{cwd:D});else{let B=await AE0();if(B.works)J=F;else return{success:!1,error:`GitHub authentication not configured.
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package/package.json
CHANGED