nemar-cli 0.3.2-dev.37 → 0.3.2

package/dist/index.js

@@ -118,7 +118,7 @@ Approving user: ${D}
 Revoking access for: ${D}
 `)),console.log(z.yellow("This will:")),console.log("  1. Invalidate all API keys for this user"),console.log("  2. Remove them from datasets they have access to"),console.log("  3. Send them a notification email"),console.log();let{confirm:$}=await uD.prompt([{type:"input",name:"confirm",message:`Type '${D}' to confirm revocation:`,validate:(J)=>{if(J!==D)return"Username does not match";return!0}}]),B=_(`Revoking ${D}...`).start();try{await Cv(D),B.succeed(`Revoked access for ${D}`)}catch(J){if(J instanceof YD){if(B.fail(J.message),J.statusCode===403)console.log(z.gray("  This command requires admin privileges"));else if(J.statusCode===404)console.log(z.gray("  User not found"))}else B.fail("Failed to revoke user")}});c8.command("regenerate-iam").description("Regenerate AWS IAM credentials for a user").argument("<username>","Username to regenerate credentials for").action(async(D)=>{if(!j6())return;console.log(z.yellow(`
 Regenerate IAM credentials for: ${D}
-`)),console.log("This will:"),console.log("  1. Create new AWS IAM access keys for the user"),console.log("  2. Invalidate any existing access keys"),console.log("  3. Restore S3 access to their datasets"),console.log(),console.log(z.gray("Use this if a user's credentials were compromised or lost.")),console.log();let{confirm:F}=await uD.prompt([{type:"confirm",name:"confirm",message:`Regenerate IAM credentials for ${D}?`,default:!1}]);if(!F){console.log(z.gray("Cancelled"));return}let $=_(`Regenerating IAM credentials for ${D}...`).start();try{let B=await Rv(D);if($.succeed(`Regenerated IAM credentials for ${D}`),console.log(),console.log(`  IAM Username: ${z.cyan(B.user.iam_username)}`),B.user.is_admin)console.log(`  Admin: ${z.magenta("yes (full bucket access)")}`);if(console.log(`  Datasets restored: ${z.green(B.datasets_restored)}`),B.warning)console.log(),console.log(z.yellow(`  Warning: ${B.warning}`)),console.log(z.gray("  Please verify old credentials are revoked in AWS console."));console.log(),console.log(z.gray("The user can now upload to their datasets again."))}catch(B){if(B instanceof YD){if($.fail(B.message),B.statusCode===403)console.log(z.gray("  This command requires admin privileges"));else if(B.statusCode===404)console.log(z.gray("  User not found or not approved"))}else{$.fail("Failed to regenerate IAM credentials");let J=B instanceof Error?B.message:String(B);console.log(z.gray(`  Error details: ${J}`))}}});var zE=new f0("doi").description("DOI management");zE.command("create").description("Create concept DOI for a dataset").argument("<dataset-id>","Dataset ID (e.g., nm000104)").option("--title <title>","DOI title (defaults to dataset name)").option("--description <desc>","DOI description").option("--sandbox","Use Zenodo sandbox for testing").action(async(D,F)=>{if(!j6())return;let $=_("Fetching dataset info...").start(),B;try{B=await WF(D),$.succeed(`Found dataset: ${B.name}`)}catch(Q){if(Q instanceof YD){if($.fail(Q.message),Q.statusCode===404)console.log(z.gray("  Dataset not found"))}else $.fail("Failed to fetch dataset");return}try{let Q=await WE(D);if(Q.concept_doi){if(console.log(z.yellow(`
+`)),console.log("This will:"),console.log("  1. Create new AWS IAM access keys for the user"),console.log("  2. Invalidate any existing access keys"),console.log("  3. Restore S3 access to their datasets"),console.log(),console.log(z.gray("Use this if a user's credentials were compromised or lost.")),console.log();let{confirm:F}=await uD.prompt([{type:"confirm",name:"confirm",message:`Regenerate IAM credentials for ${D}?`,default:!1}]);if(!F){console.log(z.gray("Cancelled"));return}let $=_(`Regenerating IAM credentials for ${D}...`).start();try{let B=await Rv(D);$.succeed(`Regenerated IAM credentials for ${D}`),console.log(),console.log(`  IAM Username: ${z.cyan(B.user.iam_username)}`),console.log(`  Datasets restored: ${z.green(B.datasets_restored)}`),console.log(),console.log(z.gray("The user can now upload to their datasets again."))}catch(B){if(B instanceof YD){if($.fail(B.message),B.statusCode===403)console.log(z.gray("  This command requires admin privileges"));else if(B.statusCode===404)console.log(z.gray("  User not found or not approved"))}else $.fail("Failed to regenerate IAM credentials")}});var zE=new f0("doi").description("DOI management");zE.command("create").description("Create concept DOI for a dataset").argument("<dataset-id>","Dataset ID (e.g., nm000104)").option("--title <title>","DOI title (defaults to dataset name)").option("--description <desc>","DOI description").option("--sandbox","Use Zenodo sandbox for testing").action(async(D,F)=>{if(!j6())return;let $=_("Fetching dataset info...").start(),B;try{B=await WF(D),$.succeed(`Found dataset: ${B.name}`)}catch(Q){if(Q instanceof YD){if($.fail(Q.message),Q.statusCode===404)console.log(z.gray("  Dataset not found"))}else $.fail("Failed to fetch dataset");return}try{let Q=await WE(D);if(Q.concept_doi){if(console.log(z.yellow(`
 Dataset already has a concept DOI:`)),console.log(`  Concept DOI: ${z.cyan(Q.concept_doi)}`),Q.zenodo_concept_url)console.log(`  Zenodo URL:  ${Q.zenodo_concept_url}`);return}}catch{}if(console.log(),console.log(z.cyan("Dataset Information:")),console.log(`  ID:          ${B.dataset_id}`),console.log(`  Name:        ${B.name}`),B.github_repo)console.log(`  GitHub:      ${B.github_repo}`);if(F.sandbox)console.log(`  Mode:        ${z.yellow("SANDBOX (test DOI)")}`);console.log(),console.log(z.red("WARNING: DOIs are PERMANENT and cannot be deleted!")),console.log(z.gray("The DOI will be pre-reserved but not published until the first version release.")),console.log();let{confirm:J}=await uD.prompt([{type:"confirm",name:"confirm",message:F.sandbox?"Create test concept DOI on Zenodo sandbox?":"Create concept DOI on Zenodo?",default:!1}]);if(!J){console.log(z.gray("Cancelled"));return}let Y=_("Creating concept DOI on Zenodo...").start();try{let Q=await Ov(D,{title:F.title,description:F.description,sandbox:F.sandbox});if(Y.succeed("Concept DOI created successfully"),console.log(),console.log(z.green("DOI Information:")),console.log(`  Concept DOI: ${z.cyan(Q.concept_doi)}`),console.log(`  Zenodo URL:  ${Q.zenodo_url}`),console.log(),console.log(z.yellow("Next steps:")),console.log("  1. Set up automatic DOI publishing by running:"),console.log(z.gray(`     ${Q.setup_command}`)),console.log("     (paste the webhook token when prompted)"),console.log(),console.log("  2. Update dataset_description.json with DatasetDOI field"),console.log("  3. Create a PR and merge it to trigger version DOI publication"),console.log(),F.sandbox)console.log(z.gray("Note: This is a sandbox DOI and will not resolve in production."))}catch(Q){if(Q instanceof YD){if(Y.fail(Q.message),Q.statusCode===403)console.log(z.gray("  This command requires admin privileges"))}else Y.fail("Failed to create concept DOI"),console.log(z.gray(`  ${Q instanceof Error?Q.message:"Unknown error"}`))}});zE.command("info").description("Get DOI info for a dataset").argument("<dataset-id>","Dataset ID (e.g., nm000104)").action(async(D)=>{if(!j6())return;let F=_("Fetching DOI info...").start();try{let $=await WE(D);if(F.stop(),console.log(),console.log(z.cyan(`DOI Information for ${D}:`)),console.log(`  Dataset Name:    ${$.name}`),console.log(),$.concept_doi){if(console.log(z.green("Concept DOI:")),console.log(`  DOI:  ${$.concept_doi}`),console.log(`  URL:  https://doi.org/${$.concept_doi}`),$.zenodo_concept_url)console.log(`  Zenodo: ${$.zenodo_concept_url}`)}else console.log(z.yellow("No concept DOI created yet")),console.log(z.gray("  Use 'nemar admin doi create' to create one"));if(console.log(),$.latest_version_doi){if(console.log(z.green("Latest Version DOI:")),console.log(`  DOI:  ${$.latest_version_doi}`),console.log(`  URL:  https://doi.org/${$.latest_version_doi}`),$.zenodo_latest_version_url)console.log(`  Zenodo: ${$.zenodo_latest_version_url}`)}else if($.concept_doi)console.log(z.yellow("No version DOI published yet")),console.log(z.gray("  Version DOIs are created automatically on PR merge"))}catch($){if($ instanceof YD){if(F.fail($.message),$.statusCode===404)console.log(z.gray("  Dataset not found"));else if($.statusCode===403)console.log(z.gray("  This command requires admin privileges"))}else F.fail("Failed to fetch DOI info")}});c8.addCommand(zE);c8.command("revert").description("Revert a dataset to a previous version (creates PR for review)").argument("<dataset-id>","Dataset ID (e.g., nm000104)").argument("[version]","Target version to revert to (e.g., 1.0.0)").option("--list","List available versions without reverting").option("--force","Direct push to main without PR (emergency only)").option("--message <msg>","Custom revert commit message").option("--dir <path>","Use existing local clone instead of cloning fresh").action(async(D,F,$)=>{if(!j6())return;let B=await M$();if(!B.allPassed){console.log(z.red("Error: Missing prerequisites"));for(let v of B.errors)console.log(z.gray(`  - ${v}`));return}let J,Y=!0;if($.dir){if(!fED($.dir)){console.log(z.red(`Error: Directory not found: ${$.dir}`));return}J=$.dir,Y=!1}else J=gED(process.cwd(),`${D}-revert-${Date.now()}`);let Q=_("Fetching dataset info...").start(),X;try{X=await WF(D),Q.succeed(`Found dataset: ${X.name}`)}catch(v){if(v instanceof YD){if(Q.fail(v.message),v.statusCode===404)console.log(z.gray("  Dataset not found"))}else Q.fail("Failed to fetch dataset");return}if(!X.github_repo){console.log(z.red("Error: Dataset has no GitHub repository"));return}if(Y){let v=_(`Cloning ${D}...`).start(),O=`https://github.com/${X.github_repo}.git`,QD=await N$(O,J);if(!QD.success){v.fail(`Clone failed: ${QD.error}`);return}v.succeed(`Cloned to ${J}`)}let E=await uv(J);if(E.length===0){console.log(z.yellow("No versions found for this dataset")),console.log(z.gray("  Dataset may not have any tagged releases yet"));return}if($.list){console.log(`
 ${z.cyan("Available Versions:")}
 `);for(let v of E)console.log(`  ${z.green(v.version)}  ${z.gray(v.date)}  ${z.gray(v.commit)}`);return}let G=F;if(!G){console.log(`
@@ -332,7 +332,7 @@ Examples:
   $ nemar sandbox           # Run sandbox training
   $ nemar sandbox status    # Check if training is completed
   $ nemar sandbox reset     # Reset for re-training
-`).action(sED);async function sED(){if(console.log(),console.log(z.bold("NEMAR Sandbox Training")),console.log(z.gray("Verify your setup and learn the upload workflow")),console.log(),!yD()){console.log(z.red("Not authenticated")),console.log(z.gray("Run 'nemar auth login' first"));return}let D=rD();if(D.sandboxCompleted){console.log(z.green("Sandbox training already completed!")),console.log(z.gray(`Dataset ID: ${D.sandboxDatasetId}`)),console.log(),console.log("You can upload real datasets with:"),console.log(z.cyan("  nemar dataset upload ./your-dataset")),console.log(),console.log(z.gray("To re-run training, use: nemar sandbox reset"));return}console.log(z.bold("Step 1/6: Checking prerequisites..."));let F=_("Checking DataLad, git-annex, and SSH...").start(),$=await G$();if(!$.allPassed){F.fail("Prerequisites check failed"),console.log(),console.log(z.red("Missing requirements:"));for(let U of $.errors)console.log(z.yellow(`  - ${U}`));if(!$.githubSSH.accessible)console.log(z.gray("    Run 'nemar auth setup-ssh' to configure SSH"));return}F.succeed("All prerequisites met"),console.log(),console.log(z.bold("Step 2/6: Generating test dataset..."));let B=_("Creating minimal BIDS structure...").start(),J;try{let U=Dy();J=U.root;let M=Fy(U);B.succeed(`Test dataset created (${V$(M)})`),console.log(z.gray(`  Location: ${J}`))}catch(U){B.fail("Failed to generate test dataset"),console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`));return}console.log(),console.log(z.bold("Step 3/6: Registering sandbox dataset..."));let Y=_("Creating dataset on NEMAR...").start(),Q,X,E,G,H;try{let U=await X$({name:"Sandbox Training Dataset",description:"Placeholder dataset for sandbox training",files:[{path:"sub-01/eeg/sub-01_task-rest_eeg.edf",size:512000,type:"data"},{path:"dataset_description.json",size:200,type:"metadata"},{path:"participants.tsv",size:50,type:"metadata"},{path:"README",size:500,type:"metadata"},{path:"sub-01/eeg/sub-01_task-rest_eeg.json",size:300,type:"metadata"}],sandbox:!0});Q=U.dataset.dataset_id,X=U.dataset.ssh_url,E=U.s3_config,G=U.dataset.s3_prefix,H=U.upload_urls||{},Y.succeed(`Sandbox dataset created: ${z.cyan(Q)}`),console.log(z.gray(`  GitHub: ${U.dataset.github_url}`)),await new Promise((M)=>setTimeout(M,3000))}catch(U){if(Y.fail("Failed to create sandbox dataset"),U instanceof YD)console.log(z.red(`  ${U.message}`));else console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`));k1(J);return}console.log(),console.log(z.bold("Step 4/6: Initializing repository..."));let q=_("Setting up DataLad and git-annex...").start();try{await H$(J),await W$(J),await q$(J,X),q.succeed("Repository initialized")}catch(U){q.fail("Failed to initialize repository"),console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`)),k1(J);return}if(console.log(),console.log(z.bold("Step 5/6: Uploading to S3...")),Object.keys(H).length===0)console.log(z.yellow("  No data files to upload (metadata only)"));else{let U=_("Uploading test data...").start();try{let N=0,Z=Object.keys(H).length,C=await A$(J,H,{jobs:4,onProgress:(w)=>{if(w.status==="completed"||w.status==="failed")N++,U.text=`Uploading... ${N}/${Z} files`}});if(C.failed.length>0){U.fail(`Upload failed for ${C.failed.length} file(s)`);for(let w of C.failed)console.log(z.red(`    Failed: ${w}`));if(C.error)console.log(z.red(`    Error: ${C.error}`));console.log(),console.log(z.yellow("Sandbox training aborted due to upload failures.")),console.log(z.gray("Please check your network connection and try again.")),k1(J);return}U.succeed(`Uploaded ${C.uploaded} file(s)`)}catch(N){U.fail("Upload failed"),console.log(z.red(`  ${N instanceof Error?N.message:"Unknown error"}`)),k1(J);return}let M=_("Registering file URLs...").start();try{let N={};for(let C of Object.keys(H))N[C]=`${E.public_url}/${G}/${C}`;let Z=await U$(J,N);if(!Z.success){M.fail(`URL registration failed for ${Z.failed.length} file(s)`);for(let C of Z.failed)console.log(z.red(`    Failed: ${C}`));console.log(),console.log(z.yellow("Sandbox training aborted due to URL registration failures.")),console.log(z.gray("This may indicate a git-annex configuration issue.")),k1(J);return}M.succeed(`Registered ${Z.registered} file URLs`)}catch(N){M.fail("Failed to register URLs"),console.log(z.red(`  ${N instanceof Error?N.message:"Unknown error"}`)),k1(J);return}}console.log(),console.log(z.bold("Step 6/6: Pushing to GitHub..."));let V=_("Saving and pushing...").start();try{await K$(J,"Initial sandbox training upload"),await z$(J),V.succeed("Pushed to GitHub")}catch(U){V.fail("Failed to push to GitHub"),console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`)),k1(J);return}let A=_("Finalizing...").start();try{await E$(Q),await Pv(Q),pD("sandboxCompleted",!0),pD("sandboxDatasetId",Q),A.succeed("Sandbox training complete!")}catch(U){A.fail("Failed to finalize"),console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`)),k1(J);return}k1(J),console.log(),console.log(z.green.bold("Congratulations! Sandbox training completed successfully.")),console.log(),console.log("Your setup is verified and you're ready to upload real datasets:"),console.log(z.cyan("  nemar dataset upload ./your-dataset")),console.log(),console.log(z.gray(`Sandbox dataset: ${Q}`))}O$.command("status").description("Check sandbox training completion status").option("--refresh","Fetch latest status from server").action(async(D)=>{if(!yD()){console.log(z.red("Not authenticated")),console.log(z.gray("Run 'nemar auth login' first"));return}if(D.refresh){let F=_("Checking status...").start();try{let $=await kv();if(pD("sandboxCompleted",$.sandbox_completed),$.sandbox_dataset_id)pD("sandboxDatasetId",$.sandbox_dataset_id);if(F.stop(),$.sandbox_completed){if(console.log(z.green("Sandbox training: Completed")),console.log(z.gray(`  Dataset ID: ${$.sandbox_dataset_id}`)),$.sandbox_completed_at)console.log(z.gray(`  Completed: ${$.sandbox_completed_at}`))}else console.log(z.yellow("Sandbox training: Not completed")),console.log(),console.log("Run sandbox training with:"),console.log(z.cyan("  nemar sandbox"))}catch($){if(F.fail("Failed to check status"),$ instanceof YD)console.log(z.red(`  ${$.message}`))}}else{let F=rD();if(F.sandboxCompleted)console.log(z.green("Sandbox training: Completed")),console.log(z.gray(`  Dataset ID: ${F.sandboxDatasetId}`));else console.log(z.yellow("Sandbox training: Not completed")),console.log(),console.log("Run sandbox training with:"),console.log(z.cyan("  nemar sandbox"))}});O$.command("reset").description("Reset sandbox training status for re-training").option("-f, --force","Skip confirmation prompt").action(async(D)=>{if(!yD()){console.log(z.red("Not authenticated")),console.log(z.gray("Run 'nemar auth login' first"));return}if(!rD().sandboxCompleted){console.log(z.yellow("Sandbox training not yet completed")),console.log(z.gray("Nothing to reset"));return}if(!D.force){let B=(await Promise.resolve().then(() => (q3(),FI))).default,{confirm:J}=await B.prompt([{type:"confirm",name:"confirm",message:"Reset sandbox training status? You will need to complete training again.",default:!1}]);if(!J){console.log(z.gray("Cancelled"));return}}let $=_("Resetting sandbox status...").start();try{await Sv(),pD("sandboxCompleted",!1),pD("sandboxDatasetId",void 0),$.succeed("Sandbox status reset"),console.log(),console.log("Run sandbox training again with:"),console.log(z.cyan("  nemar sandbox"))}catch(B){if($.fail("Failed to reset"),B instanceof YD)console.log(z.red(`  ${B.message}`));else console.log(z.red(`  ${B instanceof Error?B.message:"Unknown error"}`))}});var $y={name:"nemar-cli",version:"0.3.2-dev.37",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit",prepublishOnly:"bun run build","docs:generate":"bun run scripts/generate-docs.ts","docs:serve":"mkdocs serve","docs:build":"mkdocs build"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"MIT",repository:{type:"git",url:"git+https://github.com/nemarDatasets/nemar-cli.git"},bugs:{url:"https://github.com/nemarDatasets/nemar-cli/issues"},homepage:"https://nemar-cli.pages.dev",engines:{bun:">=1.0.0"},files:["dist","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1",inquirer:"^9.2.15",ora:"^8.0.1",zod:"^3.23.8"},devDependencies:{"@biomejs/biome":"^1.9.4","@types/bcryptjs":"^3.0.0","@types/bun":"latest","@types/inquirer":"^9.0.7",bcryptjs:"^3.0.3",typescript:"^5.5.4"}};var By=$y.version;var Q1=new f0;Q1.name("nemar").description(`CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource)
+`).action(sED);async function sED(){if(console.log(),console.log(z.bold("NEMAR Sandbox Training")),console.log(z.gray("Verify your setup and learn the upload workflow")),console.log(),!yD()){console.log(z.red("Not authenticated")),console.log(z.gray("Run 'nemar auth login' first"));return}let D=rD();if(D.sandboxCompleted){console.log(z.green("Sandbox training already completed!")),console.log(z.gray(`Dataset ID: ${D.sandboxDatasetId}`)),console.log(),console.log("You can upload real datasets with:"),console.log(z.cyan("  nemar dataset upload ./your-dataset")),console.log(),console.log(z.gray("To re-run training, use: nemar sandbox reset"));return}console.log(z.bold("Step 1/6: Checking prerequisites..."));let F=_("Checking DataLad, git-annex, and SSH...").start(),$=await G$();if(!$.allPassed){F.fail("Prerequisites check failed"),console.log(),console.log(z.red("Missing requirements:"));for(let U of $.errors)console.log(z.yellow(`  - ${U}`));if(!$.githubSSH.accessible)console.log(z.gray("    Run 'nemar auth setup-ssh' to configure SSH"));return}F.succeed("All prerequisites met"),console.log(),console.log(z.bold("Step 2/6: Generating test dataset..."));let B=_("Creating minimal BIDS structure...").start(),J;try{let U=Dy();J=U.root;let M=Fy(U);B.succeed(`Test dataset created (${V$(M)})`),console.log(z.gray(`  Location: ${J}`))}catch(U){B.fail("Failed to generate test dataset"),console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`));return}console.log(),console.log(z.bold("Step 3/6: Registering sandbox dataset..."));let Y=_("Creating dataset on NEMAR...").start(),Q,X,E,G,H;try{let U=await X$({name:"Sandbox Training Dataset",description:"Placeholder dataset for sandbox training",files:[{path:"sub-01/eeg/sub-01_task-rest_eeg.edf",size:512000,type:"data"},{path:"dataset_description.json",size:200,type:"metadata"},{path:"participants.tsv",size:50,type:"metadata"},{path:"README",size:500,type:"metadata"},{path:"sub-01/eeg/sub-01_task-rest_eeg.json",size:300,type:"metadata"}],sandbox:!0});Q=U.dataset.dataset_id,X=U.dataset.ssh_url,E=U.s3_config,G=U.dataset.s3_prefix,H=U.upload_urls||{},Y.succeed(`Sandbox dataset created: ${z.cyan(Q)}`),console.log(z.gray(`  GitHub: ${U.dataset.github_url}`)),await new Promise((M)=>setTimeout(M,3000))}catch(U){if(Y.fail("Failed to create sandbox dataset"),U instanceof YD)console.log(z.red(`  ${U.message}`));else console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`));k1(J);return}console.log(),console.log(z.bold("Step 4/6: Initializing repository..."));let q=_("Setting up DataLad and git-annex...").start();try{await H$(J),await W$(J),await q$(J,X),q.succeed("Repository initialized")}catch(U){q.fail("Failed to initialize repository"),console.log(z.red(`  ${U instanceof Error?U.message:"Unknown error"}`)),k1(J);return}if(console.log(),console.log(z.bold("Step 5/6: Uploading to S3...")),Object.keys(H).length===0)console.log(z.yellow("  No data files to upload (metadata only)"));else{let U=_("Uploading test data...").start();try{let N=0,Z=Object.keys(H).length,C=await A$(J,H,{jobs:4,onProgress:(w)=>{if(w.status==="completed"||w.status==="failed")N++,U.text=`Uploading... ${N}/${Z} files`}});if(C.failed.length>0){U.fail(`Upload failed for ${C.failed.length} file(s)`);for(let w of C.failed)console.log(z.red(`    Failed: ${w}`));if(C.error)console.log(z.red(`    Error: ${C.error}`));console.log(),console.log(z.yellow("Sandbox training aborted due to upload failures.")),console.log(z.gray("Please check your network connection and try again.")),k1(J);return}U.succeed(`Uploaded ${C.uploaded} file(s)`)}catch(N){U.fail("Upload failed"),console.log(z.red(`  ${N instanceof Error?N.message:"Unknown 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 NEMAR is a curated repository for neurophysiology data in BIDS format.
 This CLI provides tools for uploading, downloading, and managing datasets.`).version(By,"-v, --version","Output the current version").option("--no-color","Disable colored output").option("--verbose","Enable verbose output").addHelpText("after",`

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "nemar-cli",
-  "version": "0.3.2-dev.37",
+  "version": "0.3.2",
   "description": "CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",
   "type": "module",
   "main": "dist/index.js",