npm - nemar-cli - Versions diffs - 0.10.27-dev.4112 → 0.10.27 - Mend

nemar-cli 0.10.27-dev.4112 → 0.10.27

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (3) hide show

package/dist/git-annex-remote-nemar.js +3 -3
package/dist/index.js +5 -5
package/package.json +1 -1

package/dist/git-annex-remote-nemar.js CHANGED Viewed

@@ -23,18 +23,18 @@ ${t}`,zM,GM,KM=(e,t,r)=>{let n=r===""?"":`with ${r.trim()}() `,s=VM.bind(null,n,
 `)}var Fl=!1;var{spawn:WF}=globalThis.Bun;function Vl(e,t=[]){let r=e.replace(YF,'("$1","<redacted>")');for(let n of t)if(n.length>=XF)r=r.split(n).join("<redacted>");return r}function QF(e){let t=["AWS_SESSION_TOKEN","AWS_SECRET_ACCESS_KEY","AWS_ACCESS_KEY_ID"],r=new Set;for(let n of[process.env,e??{}])for(let s of t){let o=n[s];if(typeof o==="string"&&o.length>0)r.add(o)}return[...r]}async function hb(e,t){let r=e.getReader(),n=new TextDecoder,s="";while(!0){let{done:o,value:i}=await r.read();if(o)break;if(i.byteLength===0)continue;t(),s+=n.decode(i,{stream:!0})}return s+n.decode()}async function mb(e,t={}){let r={...process.env,GIT_TERMINAL_PROMPT:"0",...t.env};for(let y of t.unsetEnv??[])delete r[y];let n=WF({cmd:e,cwd:t.cwd,...t.stdin===void 0?{}:{stdin:new TextEncoder().encode(t.stdin)},stdout:"pipe",stderr:"pipe",env:r}),s=!1,o,i,a=performance.now(),c=()=>{if(i!==void 0)clearTimeout(i),i=void 0},u=()=>{if(!t.onInactivityWarning)return;c(),i=setTimeout(()=>{i=void 0;try{t.onInactivityWarning?.(performance.now()-a)}catch{console.error("Could not display subprocess inactivity warning; the child result is unaffected.")}},t.inactivityWarningAfterMs??JF)};if(u(),t.timeout)o=setTimeout(()=>{s=!0,c(),n.kill()},t.timeout);let d=ic()?[...QF(r),...t.redact??[]]:[];if(ic()){let y=t.cwd?` (cwd=${t.cwd})`:"";qs(Nt.dim(Vl(`$ ${e.join(" ")}${y}`,d)))}let l=()=>{a=performance.now(),u()},p,f,h,m=n.exited.then((y)=>(c(),y));try{[p,f,h]=await Promise.all([hb(n.stdout,l),hb(n.stderr,l),m])}finally{if(c(),o)clearTimeout(o)}if(ic()){if(t.sensitiveOutput)qs(Nt.dim("[sensitive subprocess output suppressed]"));else{if(p.trim())qs(Nt.dim(Vl(p.trimEnd(),d)));if(f.trim())qs(Nt.yellow(Vl(f.trimEnd(),d)))}qs(Nt.dim(`(exit ${h})`))}if(s)return{stdout:p,stderr:f||`Command timed out after ${Math.round(t.timeout/1000)}s`,exitCode:h??1,timedOut:!0};return{stdout:p,stderr:f,exitCode:h,timedOut:!1}}var YF,XF=8,JF=120000;var gb=F(()=>{Ul();YF=/\(\s*"((?:x-amz-)[^"]*|authorization|proxy-authorization)"\s*,\s*"[^"]*"\s*\)/gi});function eV(){if(process.platform==="darwin")return"macos";if(process.platform==="win32")return"windows";return"linux"}function _b(e,t=eV()){return e.installInstructions[t]}function tV(e){let t=e.match(/(\d+\.\d+(?:\.\d+)?)/);return t?t[1]:void 0}function nV(){let e=Number(process.env.TEST_PROBE_TIMEOUT_MS);return Number.isFinite(e)&&e>0?e:rV}async function vb(e){try{let{exitCode:t,stdout:r,timedOut:n}=await mb(e.cmd,{timeout:nV()});if(n)return{available:!1,timedOut:!0};if(t!==0)return{available:!1};return{available:!0,version:tV(r)}}catch(t){let r=t instanceof Error?t.message:String(t);if(!r.includes("ENOENT")&&!r.includes("not found"))console.error(`  Warning: ${e.name} check failed unexpectedly: ${r}`);return{available:!1}}}async function zl(){let e=Object.entries(yb);return Promise.all(e.map(async([t,r])=>{let{available:n,version:s,timedOut:o}=await vb(r);return{key:t,name:r.name,purpose:r.purpose,required:r.required,available:n,version:s,timedOut:o,installInstruction:_b(r)}}))}async function Z3(){let t=(await zl()).filter((r)=>r.required&&!r.available);if(t.length===0)return[];console.warn(`
 Heads up: some tools NEMAR needs for uploading/validating aren't installed yet:`);for(let r of t)console.warn(`  - ${r.name} (${r.purpose})`),console.warn(`      Install: ${r.installInstruction}`);return console.warn("Run `nemar doctor` anytime to re-check. You can finish signup without them.\n"),t}async function eB(e){let r=ZF[e].map((i)=>yb[i]).filter(Boolean),n=await Promise.all(r.map(async(i)=>{let a=await vb(i);return{check:i,available:a.available,timedOut:a.timedOut}}));for(let i of n)if(i.timedOut&&i.check.required)console.warn(`Warning: ${i.check.name} did not respond to a version check in time; continuing anyway.`);let s=n.filter((i)=>!i.available&&!i.timedOut&&i.check.required).map((i)=>({tool:i.check.name,installInstruction:_b(i.check)}));if(s.length===0)return;let o=[`
 Missing required tools:`];for(let i of s)o.push(`  ${i.tool} not installed`),o.push(`    Install: ${i.installInstruction}`);throw Error(o.join(`
-`))}var yb,ZF,rV=4000;var $b=F(()=>{gb();yb={git:{name:"git",purpose:"version control for dataset metadata",cmd:["git","--version"],required:!0,installInstructions:{macos:"brew install git  (or install Xcode Command Line Tools)",linux:"sudo apt-get install git  OR  sudo dnf install git",windows:"winget install Git.Git  (or https://git-scm.com/download/win)"}},"git-annex":{name:"git-annex",purpose:"large-file data transfer (upload/download)",cmd:["git-annex","version"],required:!0,installInstructions:{macos:"brew install git-annex",linux:"sudo apt-get install git-annex  OR  sudo dnf install git-annex",windows:"Download the installer from https://git-annex.branchable.com/install/Windows/"}},gh:{name:"GitHub CLI (gh)",purpose:"GitHub authentication + repository operations",cmd:["gh","--version"],required:!0,installInstructions:{macos:"brew install gh",linux:"See https://cli.github.com/manual/installation",windows:"winget install GitHub.cli  (or: scoop install gh)"}},aws:{name:"AWS CLI",purpose:"S3 data upload/download",cmd:["aws","--version"],required:!0,installInstructions:{macos:"brew install awscli",linux:"pip install awscli  OR  sudo snap install aws-cli --classic",windows:"winget install Amazon.AWSCLI  (or the MSI from https://aws.amazon.com/cli/)"}},deno:{name:"Deno",purpose:"BIDS validation",cmd:["deno","--version"],required:!0,installInstructions:{macos:"brew install deno  (or: curl -fsSL https://deno.land/install.sh | sh)",linux:"curl -fsSL https://deno.land/install.sh | sh",windows:"winget install DenoLand.Deno  (or: irm https://deno.land/install.ps1 | iex)"}}},ZF={upload:["git-annex","gh","aws","deno"],download:["gh"],clone:["git","gh"],push:["git-annex","gh"],publish:["gh","aws"],update:["git","gh"],release:["git","gh"]}});var wb;var Eb=F(()=>{wb={name:"nemar-cli",packageManager:"bun@1.4.3",version:"0.10.27-dev.4112",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js","git-annex-remote-nemar":"dist/git-annex-remote-nemar.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts src/git-annex-remote-nemar.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:scrub":"biome check scripts/scrub shared/identifier-scrub.ts test/scrub","test:scrub":"bun test --preload ./test/scrub/helpers/temp-dirs-preload.ts --path-ignore-patterns='__run_every_scrub_suite__' test/scrub test/identifier-scan.test.ts test/identifier-scrub.test.ts test/identifier-dates.test.ts test/identifier-fleet.test.ts","migrations:d1-check":"bun run scripts/d1-migration-check.ts","zarr:geometry-check":"bun run backend/scripts/zarr-geometry-conformance.ts","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend","generate-openapi":"bun run scripts/generate-openapi.ts",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","scripts/recover-datasets.json","scripts/withdrawn-datasets.json","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1",inquirer:"^9.2.15",ora:"^8.0.1",semver:"^7.8.5",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},trustedDependencies:["@biomejs/biome"],devDependencies:{"@anthropic-ai/sdk":"^0.132.1","@asteasolutions/zod-to-openapi":"^7.3.4","@biomejs/biome":"1.9.4","@types/bun":"latest","@types/inquirer":"^9.0.7","@types/semver":"^7.8.0",ajv:"^8.20.0","ajv-formats":"^3.0.1",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var ac;var Gl=F(()=>{Eb();ac=wb.version});import{mkdirSync as oV,readdirSync as iV,unlinkSync as aV,writeFileSync as cV}from"fs";import{join as Kl}from"path";function dB(){Ds=!0}function lc(){return Ds}function fB(e,t=process.env){return e.includes("--debug")||t.NEMAR_DEBUG==="1"}function pB(e){Tb=e,pr(`Step: ${e}`)}function hB(){xb=!0}function mB(){return xb}function gB(){if(Rb)return;Bl=!0}function yB(){Bl=!1,Rb=!0}function _B(){return Bl}function pr(e){if(Ds)process.stderr.write(`[debug] ${e}
+`))}var yb,ZF,rV=4000;var $b=F(()=>{gb();yb={git:{name:"git",purpose:"version control for dataset metadata",cmd:["git","--version"],required:!0,installInstructions:{macos:"brew install git  (or install Xcode Command Line Tools)",linux:"sudo apt-get install git  OR  sudo dnf install git",windows:"winget install Git.Git  (or https://git-scm.com/download/win)"}},"git-annex":{name:"git-annex",purpose:"large-file data transfer (upload/download)",cmd:["git-annex","version"],required:!0,installInstructions:{macos:"brew install git-annex",linux:"sudo apt-get install git-annex  OR  sudo dnf install git-annex",windows:"Download the installer from https://git-annex.branchable.com/install/Windows/"}},gh:{name:"GitHub CLI (gh)",purpose:"GitHub authentication + repository operations",cmd:["gh","--version"],required:!0,installInstructions:{macos:"brew install gh",linux:"See https://cli.github.com/manual/installation",windows:"winget install GitHub.cli  (or: scoop install gh)"}},aws:{name:"AWS CLI",purpose:"S3 data upload/download",cmd:["aws","--version"],required:!0,installInstructions:{macos:"brew install awscli",linux:"pip install awscli  OR  sudo snap install aws-cli --classic",windows:"winget install Amazon.AWSCLI  (or the MSI from https://aws.amazon.com/cli/)"}},deno:{name:"Deno",purpose:"BIDS validation",cmd:["deno","--version"],required:!0,installInstructions:{macos:"brew install deno  (or: curl -fsSL https://deno.land/install.sh | sh)",linux:"curl -fsSL https://deno.land/install.sh | sh",windows:"winget install DenoLand.Deno  (or: irm https://deno.land/install.ps1 | iex)"}}},ZF={upload:["git-annex","gh","aws","deno"],download:["gh"],clone:["git","gh"],push:["git-annex","gh"],publish:["gh","aws"],update:["git","gh"],release:["git","gh"]}});var wb;var Eb=F(()=>{wb={name:"nemar-cli",packageManager:"bun@1.4.3",version:"0.10.27",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js","git-annex-remote-nemar":"dist/git-annex-remote-nemar.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts src/git-annex-remote-nemar.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:scrub":"biome check scripts/scrub shared/identifier-scrub.ts test/scrub","test:scrub":"bun test --preload ./test/scrub/helpers/temp-dirs-preload.ts --path-ignore-patterns='__run_every_scrub_suite__' test/scrub test/identifier-scan.test.ts test/identifier-scrub.test.ts test/identifier-dates.test.ts test/identifier-fleet.test.ts","migrations:d1-check":"bun run scripts/d1-migration-check.ts","zarr:geometry-check":"bun run backend/scripts/zarr-geometry-conformance.ts","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend","generate-openapi":"bun run scripts/generate-openapi.ts",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","scripts/recover-datasets.json","scripts/withdrawn-datasets.json","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1",inquirer:"^9.2.15",ora:"^8.0.1",semver:"^7.8.5",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},trustedDependencies:["@biomejs/biome"],devDependencies:{"@anthropic-ai/sdk":"^0.132.1","@asteasolutions/zod-to-openapi":"^7.3.4","@biomejs/biome":"1.9.4","@types/bun":"latest","@types/inquirer":"^9.0.7","@types/semver":"^7.8.0",ajv:"^8.20.0","ajv-formats":"^3.0.1",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var ac;var Gl=F(()=>{Eb();ac=wb.version});import{mkdirSync as oV,readdirSync as iV,unlinkSync as aV,writeFileSync as cV}from"fs";import{join as Kl}from"path";function dB(){Ds=!0}function lc(){return Ds}function fB(e,t=process.env){return e.includes("--debug")||t.NEMAR_DEBUG==="1"}function pB(e){Tb=e,pr(`Step: ${e}`)}function hB(){xb=!0}function mB(){return xb}function gB(){if(Rb)return;Bl=!0}function yB(){Bl=!1,Rb=!0}function _B(){return Bl}function pr(e){if(Ds)process.stderr.write(`[debug] ${e}
 `)}function fV(e){let t={};for(let[r,n]of Object.entries(e))t[r]=dV.has(r.toLowerCase())?"[REDACTED]":n;return t}function Ob(e){let t=e.indexOf("@");if(t<=0)return"***";return`${e[0]}***${e.slice(t)}`}function Hl(e,t,r=0){if(r>hV)return"[REDACTED: depth]";if(Array.isArray(t))return t.map((n)=>Hl(e,n,r+1));if(t&&typeof t==="object"){let n={};for(let[s,o]of Object.entries(t))n[s]=Hl(s,o,r+1);return n}if(typeof t==="string"){if(pV.test(e))return"[REDACTED]";return t.replace(kb,Ob)}return t}function Wl(e){return e.replace(mV,"Bearer [REDACTED]").replace(gV,"[REDACTED_AWS_KEY]").replace(yV,"$1[REDACTED]").replace(_V,"$1$2=[REDACTED]").replace(kb,Ob)}function vV(e){return Wl(e)}function bb(e,t=lV){if(e===void 0)return;let r=e;try{let n=JSON.parse(e);r=JSON.stringify(Hl("",n))}catch{}if(r=Wl(r),Buffer.byteLength(r,"utf8")>t)r=`${Buffer.from(r,"utf8").subarray(0,t).toString("utf8")}... [truncated]`;return r}function dc(e){if(!Ds)return;let t=vV(e.url);try{let r={...e,url:t,requestHeaders:e.requestHeaders?fV(e.requestHeaders):void 0,requestBody:bb(e.requestBody),responseBody:bb(e.responseBody)};uc.push(r),pr(`${e.method} ${t} -> ${e.status??"ERROR"} (${e.durationMs}ms)`)}catch(r){let n=dr(r);uc.push({method:e.method,url:t,status:e.status,durationMs:e.durationMs,note:`redaction failed: ${n}`}),pr(`redaction failed for ${e.method} ${t}: ${n}`)}}async function $V(){let e=[];try{let t=process.versions.bun?`Bun ${process.versions.bun}`:`Node ${process.version}`;e.push(`CLI version: ${ac}`),e.push(`OS/Arch: ${process.platform}/${process.arch}`),e.push(`Runtime: ${t}`)}catch(t){e.push(`(could not read CLI/OS/runtime info: ${dr(t)})`)}e.push(""),e.push("Active account:");try{let t=hn();if(t.apiKey){if(t.username)e.push(`  Username: ${t.username}`);if(e.push(`  API URL: ${t.apiUrl}`),t.role)e.push(`  Role: ${t.role}`);e.push(`  Sandbox completed: ${!!t.sandboxCompleted}`)}else e.push("  (not authenticated)")}catch(t){e.push(`  (could not read account config: ${dr(t)})`)}e.push(""),e.push("External tools:");try{let t=await zl();for(let r of t){let n=r.available?r.version??"installed":r.timedOut?"(timed out)":"not installed";e.push(`  ${r.name}: ${n}`)}}catch(t){e.push(`  (could not probe external tools: ${dr(t)})`)}return e}async function EV(){return(await $V()).join(`
 `)}async function vB(){if(!Ds||cc!==void 0)return;try{cc=await EV()}catch(e){let t=dr(e);cc=`(could not build environment report: ${t})`,pr(`environment snapshot failed: ${t}`)}}function Ab(e){if(Sb.has(e))return{flag:e};for(let t of Sb){if(!e.startsWith(t)||e.length<=t.length)continue;if(t.length===2)return{flag:t,kind:"short-attached"};if(e[t.length]==="=")return{flag:t,kind:"long-eq"}}return null}function wV(e){let t=[];for(let r=0;r<e.length;r++){let n=e[r],s=Ab(n);if(!s){t.push(n);continue}if(s.kind==="long-eq")t.push(`${s.flag}=[REDACTED]`);else if(s.kind==="short-attached")t.push(`${s.flag}[REDACTED]`);else if(t.push(n),r+1<e.length)t.push("[REDACTED]"),r++}return t}function bV(e){let t=[];for(let r=0;r<e.length;r++){let n=e[r],s=Ab(n);if(!s){t.push(n);continue}if(!s.kind&&r+1<e.length)r++}return t}function SV(e){let t=[];for(let n of bV(e)){if(n.startsWith("-"))continue;if(t.push(n),t.length===2)break}return(t.length>0?t.join("-"):"nemar").replace(/[^a-zA-Z0-9_-]/g,"_")}function xV(e,t){let r=[];if(r.push("NEMAR CLI Debug Log"),r.push(`Generated: ${new Date().toISOString()}`),r.push(`Command: nemar ${Wl(wV(e).join(" "))}`),r.push(""),r.push(cc??"(environment snapshot unavailable)"),r.push(""),r.push("HTTP requests:"),uc.length===0)r.push("  (none)");else uc.forEach((n,s)=>{if(r.push(`  [${s+1}] ${n.method} ${n.url} -> ${n.status??"ERROR"} (${n.durationMs}ms)`),n.error)r.push(`      Error: ${n.error}`);if(n.note)r.push(`      Note: ${n.note}`);if(n.requestHeaders)r.push(`      Request headers: ${JSON.stringify(n.requestHeaders)}`);if(n.requestBody)r.push(`      Request body: ${n.requestBody}`);if(n.responseBody)r.push(`      Response body: ${n.responseBody}`)});return r.push(""),r.push(`Failing step: ${Tb??"(none recorded)"}`),r.push(`Exit code: ${t}`),`${r.join(`
 `)}
 `}function RV(e,t){let r;try{r=iV(e).filter((s)=>s.startsWith("nemar-")&&s.endsWith(".log"))}catch(s){if(s.code!=="ENOENT")pr(`could not list ${e} for log rotation: ${dr(s)}`);return}r.sort();let n=r.length-t;for(let s=0;s<n;s++)try{aV(Kl(e,r[s]))}catch(o){if(o.code!=="ENOENT")pr(`could not remove old log ${r[s]}: ${dr(o)}`)}}function $B(){return zo}function EB(e,t){if(!Ds)return null;let r=Kl(Xl(),"logs");try{oV(r,{recursive:!0})}catch(i){return zo=dr(i),pr(`could not create log directory ${r}: ${zo}`),null}let s=`nemar-${new Date().toISOString().replace(/[:.]/g,"-")}-${SV(e)}.log`,o=Kl(r,s);try{cV(o,xV(e,t),"utf8")}catch(i){return zo=dr(i),pr(`could not write log file ${o}: ${zo}`),null}return RV(r,uV),o}var uV=10,lV=2048,Ds=!1,xb=!1,Bl=!1,Rb=!1,Tb,cc,uc,dV,pV,kb,hV=32,mV,gV,yV,_V,Sb,zo;var Yl=F(()=>{Cl();fc();$b();Gl();uc=[];dV=new Set(["authorization","cookie","set-cookie","x-api-key","x-approval-dispatch-token"]);pV=/^(api[_-]?key|apikey|password|token|secret|access[_-]?key(_id)?|secret[_-]?access[_-]?key|session|session[_-]?token|authorization|ssh[_-]?key|private[_-]?key|device[_-]?code|dispatch[_-]?token)$/i,kb=/[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/g;mV=/Bearer\s+[A-Za-z0-9\-._~+/=]+/gi,gV=/\b(?:AKIA|ASIA)[0-9A-Z]{16}\b/g,yV=/((?:aws_)?secret_access_key["']?\s*[:=]\s*["']?)[A-Za-z0-9/+=]{20,}/gi,_V=/([?&])(X-Amz-Signature|X-Amz-Security-Token|X-Amz-Credential|Signature|AWSAccessKeyId)=[^&\s"']+/gi;Sb=new Set(["-k","--key","--password","--api-key"])});import{chmodSync as TV,copyFileSync as kV,existsSync as Jl,mkdirSync as OV,statSync as AV}from"fs";import{homedir as pc}from"os";import{join as Ms}from"path";function NV(e){let t=e.trim().replace(/\/+$/,"");try{let r=new URL(t);return r.protocol=r.protocol.toLowerCase(),r.host=r.host.toLowerCase(),r.toString().replace(/\/+$/,"")}catch{return console.error(`[nemar] could not parse stored apiUrl ${JSON.stringify(e)}; leaving as-is`),t}}function Xl(){return process.env.NEMAR_CONFIG_DIR||Ms(pc(),".config","nemar")}function CV(e){if(process.env.NEMAR_CONFIG_DIR)return;let t=Ms(e,"config.json");if(Jl(t))return;let r=[];if(process.platform==="darwin")r.push(Ms(pc(),"Library","Preferences","nemar-nodejs","config.json"));if(process.platform==="win32"){let n=process.env.APPDATA||Ms(pc(),"AppData","Roaming");r.push(Ms(n,"nemar-nodejs","config.json"))}r.push(Ms(pc(),".config","nemar-nodejs","config.json"));for(let n of r)if(Jl(n))try{OV(e,{recursive:!0}),kV(n,t),console.error(`[nemar] Config migrated from ${n} to ${t}
 [nemar] You can safely remove the old file.`);return}catch(s){console.error(`[nemar] Failed to migrate config from ${n}:`,s,`
-[nemar] You can manually copy ${n} to ${t}`)}}function St(){let e=Xl();if(Go&&Pb===e)return Go;if(CV(e),Go=new Ka({projectName:"nemar",configFileMode:Ql,schema:{activeAccount:{type:"string"},accounts:{type:"object"},apiKey:{type:"string"},apiUrl:{type:"string"},username:{type:"string"},email:{type:"string"},githubUsername:{type:"string"},sandboxCompleted:{type:"boolean"},sandboxDatasetId:{type:"string"}},cwd:e}),Pb=e,!Nb.has(e))Nb.add(e),jV(Go.path),DV(),MV();return Go}function jV(e){if(process.platform==="win32")return;if(!Jl(e))return;try{if((AV(e).mode&511)!==Ql)TV(e,Ql)}catch(t){console.error(`[nemar] could not secure config file permissions for ${e}:`,t)}}function DV(){let e=St(),t=e.get("accounts");if(t&&Object.keys(t).length>0)return;let r=e.get("apiKey"),n=e.get("username");if(!r&&!n)return;try{let s=n||"default",o={};for(let i of qV){let a=e.get(i);if(a!==void 0)o[i]=a}e.store={activeAccount:s,accounts:{[s]:o}}}catch(s){console.error("Config migration failed (legacy config preserved):",s)}}function MV(){let e=St(),t=e.store,r=t.accounts,n=!1;if(r)for(let[o,i]of Object.entries(r)){let a=i?.apiUrl;if(!a)continue;if(PV.has(NV(a)))r[o]={...i,apiUrl:Ls},console.error(`[nemar] migrated stored apiUrl for account "${o}": ${a} -> ${Ls}`),n=!0}let s=t.apiUrl;if(r&&Object.keys(r).length>0&&s!==void 0){let{apiUrl:o,...i}=t;try{e.store=i,console.error(`[nemar] removed stale top-level apiUrl from config (was: ${s})`),n=!1}catch(a){console.error("API URL cleanup failed (config file unchanged):",a)}}if(n)try{e.store={...e.store,accounts:r}}catch(o){console.error("API URL migration failed (config file unchanged):",o)}}function Ko(){return St().get("activeAccount")}function mn(){return St().get("accounts")||{}}function hn(){let e={apiUrl:Ls},t=Ko();if(!t)return e;return mn()[t]||e}function PB(e,t){let r=St(),n=r.get("activeAccount")||"default",s=r.get("accounts")||{};if(!s[n])s[n]={apiUrl:Ls};s[n][e]=t,r.store={...r.store,accounts:s,activeAccount:n}}function NB(e){let t=Ko();if(!t)return;let r=mn();if(r[t])delete r[t][e],St().set("accounts",r)}function IB(){let e=St(),t=Ko();if(!t){e.clear();return}let r=mn();delete r[t];let n=Object.keys(r);if(n.length>0)e.store={...e.store,accounts:r,activeAccount:n[0]};else e.clear()}function CB(){St().clear()}function jB(){return!!hn().apiKey}function qB(){return St().path}function DB(){let e=mn(),t=Ko();return Object.entries(e).map(([r,n])=>({key:r,username:n.username,email:n.email,githubUsername:n.githubUsername,active:r===t,keySource:n.keySource}))}function MB(e){return e.username?.trim()||e.email}function LV(e){let t=e.trim().toLowerCase();if(!t)return;let r=Object.entries(mn()).filter(([,n])=>n.email&&n.email.toLowerCase()===t).map(([n])=>n);if(r.length>1){pr(`findAccountKeyByEmail: ${r.length} accounts share email ${t}: ${r.join(", ")}`);return}return r[0]}function LB(e,t){let r=St(),n=mn(),s;if(n[e])s=e;else if(t.email)s=LV(t.email);let o=s?n[s]:void 0,i={...o??{apiUrl:Ls},...t};if(s&&s!==e)delete n[s];return n[e]=i,r.store={...r.store,accounts:n,activeAccount:e},{key:e,previous:o}}function UB(e){let t=e.trim();if(!t)return"unchanged";let r=St(),n=Ko();if(!n||n===t)return"unchanged";let s=mn(),o=s[n];if(!o)return"unchanged";if(s[t])return"key_taken";return delete s[n],s[t]={...o,username:t},r.store={...r.store,accounts:s,activeAccount:t},"renamed"}function FB(e){let t=St(),r=mn();if(r[e])return t.store={...t.store,activeAccount:e},r[e];for(let[n,s]of Object.entries(r))if(s.githubUsername===e)return t.store={...t.store,activeAccount:n},s;return null}var Ls="https://nemar-api-dev.sccn-org.workers.dev",Ql=384,PV,IV,AB,Go=null,Pb=null,Nb,qV;var fc=F(()=>{Fw();jn();nc();Yl();PV=new Set(["https://api.osc.earth/nemar","https://nemar-api.neuromechanist.workers.dev","https://nemar-api-dev.shirazi-10f.workers.dev"]);IV=ne({field:v(),blocks:Ze(v()).optional(),set_on:Ze(v()).optional()}).passthrough(),AB=ne({apiKey:v().optional(),apiUrl:v().url().default(Ls),username:v().optional(),email:v().email().optional(),githubUsername:v().optional(),sandboxCompleted:Ue().optional(),sandboxDatasetId:v().optional(),dismissedNoticeIds:Ze(fe()).optional(),serviceAccess:Ue().optional(),profileGaps:Ze(IV).optional(),orcidVerified:Ue().optional(),role:v().optional(),accountKind:qn.optional(),pendingEmailChange:v().email().optional()});Nb=new Set;qV=["apiKey","apiUrl","username","email","githubUsername","sandboxCompleted","sandboxDatasetId","dismissedNoticeIds"]});var UV,FV,KB,VV,HB,zV,Ib,BB,WB=8,YB=100,Cb,XB,GV,JB;var jb=F(()=>{jn();nc();UV=["given_name","family_name","affiliation","city","country"],FV=["username","github_username","email","orcid"],KB=[...UV,...FV],VV={given_name:v().max(200).optional(),family_name:v().max(200).optional(),affiliation:v().max(500).optional(),city:v().max(200).optional(),country:v().max(200).optional(),username:v().max(100).optional(),github_username:v().max(100).optional(),email:v().max(320).optional(),orcid:v().max(40).optional()},HB=ne(VV),zV=Ve(["field_not_editable","owner_only_field","edit_own_account","owner_account","system_account","invalid_edit","orcid_already_proven","invalid_search","invalid_user_id"]),Ib=zV.options,BB=["exact","name","prefix","substring","fuzzy"],Cb=ne({id:fe().int(),username:v().nullable(),email:v(),github_username:v().nullable(),status:v(),role:v().nullable(),account_kind:qn.optional(),email_verified:fe().int().nullable().optional(),orcid:v().nullable().optional(),orcid_verified:fe().int().nullable().optional(),given_name:v().nullable().optional(),family_name:v().nullable().optional(),affiliation:v().nullable().optional(),city:v().nullable().optional(),country:v().nullable().optional(),description:v().nullable().optional(),signup_source:v().nullable().optional(),created_at:v(),updated_at:v().nullable().optional(),approved_at:v().nullable().optional(),revoked_at:v().nullable().optional(),deleted_at:v().nullable().optional(),service_access:fe().int().nullable().optional(),service_access_granted_at:v().nullable().optional(),service_access_granted_by:fe().int().nullable().optional(),upload_access_requested_at:v().nullable().optional(),upload_access_notified_at:v().nullable().optional(),identity_conflict:fe().int().nullable().optional(),username_auto_assigned:fe().int().nullable().optional(),sandbox_completed:fe().int().nullable().optional(),sandbox_completed_at:v().nullable().optional(),sandbox_dataset_id:v().nullable().optional(),aws_iam_username:v().nullable().optional(),dataset_count:fe().int().optional(),active_tokens:fe().int().optional(),linked_identities:Ze(v()).optional()}).passthrough(),XB=ne({user:Cb}).passthrough(),GV=ne({from:v().nullable(),to:v().nullable()}),JB=ne({message:v(),changed:wF(v(),GV),notes:Ze(v()).optional(),old_address_notified:Ue().optional(),user:Cb}).passthrough()});var e6=120,t6=64,r6="unnamed machine",KV=25,qb,n6,Us,Db,s6,o6,i6,HV,BV,a6,Zl,c6,u6,l6,d6,f6;var Mb=F(()=>{jn();qb=Ve(["authorization_pending","slow_down","expired_token","access_denied","invalid_grant"]),n6={authorization_pending:"Waiting for you to authorize this machine in the browser.",slow_down:"Polling too quickly; the CLI will slow down automatically.",expired_token:"The code expired. Run `nemar auth login` again for a new one.",access_denied:"This sign-in was declined in the browser. Run `nemar auth login` again if that was a mistake.",invalid_grant:"That code is no longer valid. Run `nemar auth login` again for a new one."},Us=Ve(["device_code_unknown","device_code_expired","device_code_used","device_code_denied","account_pending","account_revoked","identity_conflict","service_account","person_account","too_many_keys","key_not_found"]),Db=Us.options,s6={device_code_unknown:"That code was not found. Check the code shown in your terminal, or run `nemar auth login` again for a new one.",device_code_expired:"The code expired. Run `nemar auth login` again for a new one.",device_code_used:"That code has already been used. Run `nemar auth login` again for a new one.",device_code_denied:"This sign-in was declined in the browser. Run `nemar auth login` again if that was a mistake.",account_pending:"Verify your email address first. Check your inbox for the NEMAR verification code, then authorize again.",account_revoked:"Your NEMAR account access has been revoked. Contact the NEMAR team if you think this is a mistake.",identity_conflict:"This account shares an identifier with another NEMAR account and cannot sign in until that is resolved. Fix it in Settings on nemar.org or contact the NEMAR team.",service_account:"This is a service or test account, and it cannot sign in this way. Ask an owner to create a key for it with `nemar admin keys create`.",person_account:"This account belongs to a person. A person creates their own keys with `nemar auth login` or in Settings on nemar.org.",too_many_keys:`This account already has ${KV} active keys. Revoke one in Settings on nemar.org or with \`nemar auth keys\`, then try again.`,key_not_found:"That key was not found on this account, or it is already revoked. Run `nemar auth keys` to see the active ones."},o6=ne({error:Us,message:v()}).passthrough(),i6=ne({device_code:v(),user_code:v(),verification_uri:v(),verification_uri_complete:v(),expires_in:fe().int(),interval:fe().int()}).passthrough(),HV=Yw("error",[ne({error:In("authorization_pending"),message:v()}).passthrough(),ne({error:In("slow_down"),message:v()}).passthrough()]),BV=Yw("error",[ne({error:In("expired_token"),reason:Us,message:v()}).passthrough(),ne({error:In("access_denied"),reason:Us,message:v()}).passthrough(),ne({error:In("invalid_grant"),reason:Us,message:v()}).passthrough()]),a6=EF([HV,BV]),Zl=ne({id:fe().int(),name:v().nullable(),prefix:v(),created_at:v(),last_used_at:v().nullable(),current:Ue()}).passthrough(),c6=ne({api_key:v(),key:Zl,user:ne({username:v().nullable(),email:v(),github_username:v().nullable(),role:v(),sandbox_completed:Ue(),sandbox_dataset_id:v().nullable()}).passthrough()}).passthrough(),u6=ne({user_code:v(),machine_name:v(),requested_at:v(),expires_in:fe().int(),account:ne({username:v().nullable(),email_masked:v()}).passthrough(),refusal:ne({code:Us,message:v()}).passthrough().nullable()}).passthrough(),l6=ne({ok:In(!0),machine_name:v()}).passthrough(),d6=ne({keys:Ze(Zl)}).passthrough(),f6=ne({api_key:v(),key:Zl}).passthrough()});var WV,Lb,Ho="https://nemar.org/settings",m6,YV,XV,JV,g6,y6;var Ub=F(()=>{jn();WV=Ve(["orcid_in_use","orcid_already_linked","orcid_linked_other","email_in_use","github_in_use","identity_conflict_remains"]),Lb=WV.options,m6={orcid_in_use:`That ORCID iD already belongs to a NEMAR account. Sign in to that account instead; if you want the iD on a different account, unlink it there first (Settings, ${Ho}).`,orcid_already_linked:`That ORCID iD already belongs to a NEMAR account. Sign in to that account instead; if you want the iD on a different account, unlink it there first (Settings, ${Ho}).`,orcid_linked_other:`That ORCID iD is linked to a different NEMAR account. Unlink it there first (Settings, ${Ho}), then link it here.`,email_in_use:`That email address already belongs to a NEMAR account. Sign in to that account instead, or change its address first (Settings, ${Ho}).`,github_in_use:`That GitHub account is already linked to a NEMAR account. Sign in to that account instead, or change its GitHub username first (Settings, ${Ho}).`,identity_conflict_remains:"The collision that flagged this account is still there. Resolve it on the other account first (change its email or GitHub username, or unlink its ORCID iD), or delete that account, then clear the flag."},YV=Ve(["orcid","email","github"]),XV=ne({id:fe().int(),username:v().nullable(),email:v(),created_at:v(),has_oauth_identity:Ue(),dataset_count:fe().int(),identity_conflict:fe().int(),canonical:Ue()}).passthrough(),JV=ne({kind:YV,value:v(),canonical_user_id:fe().int(),accounts:Ze(XV)}).passthrough(),g6=ne({groups:Ze(JV),group_count:fe().int(),flagged_count:fe().int()}).passthrough(),y6=ne({ok:In(!0),id:fe().int(),cleared:Ue()}).passthrough()});function b6(e){return typeof e==="string"&&ZV.includes(e)}var QV,$6,E6,w6,ZV,e9="ci_check_unavailable",Fb,Vb,zb,S6="X-Approval-Dispatch-Token",x6;var Gb=F(()=>{jn();QV=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/,$6=v().regex(QV,"ORCID must be in format 0000-0000-0000-000X"),E6=Ve(["found","no_public_name","lookup_failed"]),w6=Ve(["bids_validation_failed","bids_validation_pending","bids_validation_in_progress","prescreen_failed","min_requirements_failed","owner_name_missing","identifier_screen_findings"]),ZV=["bids_validation_pending","bids_validation_in_progress"];Fb=[e9],Vb=["identifier_screen_pending","identifier_screen_not_clear","identifier_screen_not_applicable"],zb=["publication_review_not_clear","request_blocked","request_changed","request_mismatch","dispatch_superseded","dispatch_expired","decision_with_dispatch_token","approval_in_flight","deny_after_publishing","invalid_dataset_id","approval_closed_during_run"],x6=Ve(["filled","would_fill","no_public_name","lookup_failed","write_failed"])});function Hb(e){if(Kb)return;Kb=!0;let t=Nt.yellow("\u2500".repeat(60)),r=Nt.yellow.bold("[MAINTENANCE]"),n=Nt.dim(`mode: ${e.mode}`),s=e.eta?`
+[nemar] You can manually copy ${n} to ${t}`)}}function St(){let e=Xl();if(Go&&Pb===e)return Go;if(CV(e),Go=new Ka({projectName:"nemar",configFileMode:Ql,schema:{activeAccount:{type:"string"},accounts:{type:"object"},apiKey:{type:"string"},apiUrl:{type:"string"},username:{type:"string"},email:{type:"string"},githubUsername:{type:"string"},sandboxCompleted:{type:"boolean"},sandboxDatasetId:{type:"string"}},cwd:e}),Pb=e,!Nb.has(e))Nb.add(e),jV(Go.path),DV(),MV();return Go}function jV(e){if(process.platform==="win32")return;if(!Jl(e))return;try{if((AV(e).mode&511)!==Ql)TV(e,Ql)}catch(t){console.error(`[nemar] could not secure config file permissions for ${e}:`,t)}}function DV(){let e=St(),t=e.get("accounts");if(t&&Object.keys(t).length>0)return;let r=e.get("apiKey"),n=e.get("username");if(!r&&!n)return;try{let s=n||"default",o={};for(let i of qV){let a=e.get(i);if(a!==void 0)o[i]=a}e.store={activeAccount:s,accounts:{[s]:o}}}catch(s){console.error("Config migration failed (legacy config preserved):",s)}}function MV(){let e=St(),t=e.store,r=t.accounts,n=!1;if(r)for(let[o,i]of Object.entries(r)){let a=i?.apiUrl;if(!a)continue;if(PV.has(NV(a)))r[o]={...i,apiUrl:Ls},console.error(`[nemar] migrated stored apiUrl for account "${o}": ${a} -> ${Ls}`),n=!0}let s=t.apiUrl;if(r&&Object.keys(r).length>0&&s!==void 0){let{apiUrl:o,...i}=t;try{e.store=i,console.error(`[nemar] removed stale top-level apiUrl from config (was: ${s})`),n=!1}catch(a){console.error("API URL cleanup failed (config file unchanged):",a)}}if(n)try{e.store={...e.store,accounts:r}}catch(o){console.error("API URL migration failed (config file unchanged):",o)}}function Ko(){return St().get("activeAccount")}function mn(){return St().get("accounts")||{}}function hn(){let e={apiUrl:Ls},t=Ko();if(!t)return e;return mn()[t]||e}function PB(e,t){let r=St(),n=r.get("activeAccount")||"default",s=r.get("accounts")||{};if(!s[n])s[n]={apiUrl:Ls};s[n][e]=t,r.store={...r.store,accounts:s,activeAccount:n}}function NB(e){let t=Ko();if(!t)return;let r=mn();if(r[t])delete r[t][e],St().set("accounts",r)}function IB(){let e=St(),t=Ko();if(!t){e.clear();return}let r=mn();delete r[t];let n=Object.keys(r);if(n.length>0)e.store={...e.store,accounts:r,activeAccount:n[0]};else e.clear()}function CB(){St().clear()}function jB(){return!!hn().apiKey}function qB(){return St().path}function DB(){let e=mn(),t=Ko();return Object.entries(e).map(([r,n])=>({key:r,username:n.username,email:n.email,githubUsername:n.githubUsername,active:r===t,keySource:n.keySource}))}function MB(e){return e.username?.trim()||e.email}function LV(e){let t=e.trim().toLowerCase();if(!t)return;let r=Object.entries(mn()).filter(([,n])=>n.email&&n.email.toLowerCase()===t).map(([n])=>n);if(r.length>1){pr(`findAccountKeyByEmail: ${r.length} accounts share email ${t}: ${r.join(", ")}`);return}return r[0]}function LB(e,t){let r=St(),n=mn(),s;if(n[e])s=e;else if(t.email)s=LV(t.email);let o=s?n[s]:void 0,i={...o??{apiUrl:Ls},...t};if(s&&s!==e)delete n[s];return n[e]=i,r.store={...r.store,accounts:n,activeAccount:e},{key:e,previous:o}}function UB(e){let t=e.trim();if(!t)return"unchanged";let r=St(),n=Ko();if(!n||n===t)return"unchanged";let s=mn(),o=s[n];if(!o)return"unchanged";if(s[t])return"key_taken";return delete s[n],s[t]={...o,username:t},r.store={...r.store,accounts:s,activeAccount:t},"renamed"}function FB(e){let t=St(),r=mn();if(r[e])return t.store={...t.store,activeAccount:e},r[e];for(let[n,s]of Object.entries(r))if(s.githubUsername===e)return t.store={...t.store,activeAccount:n},s;return null}var Ls="https://api.nemar.org",Ql=384,PV,IV,AB,Go=null,Pb=null,Nb,qV;var fc=F(()=>{Fw();jn();nc();Yl();PV=new Set(["https://api.osc.earth/nemar","https://nemar-api.neuromechanist.workers.dev","https://nemar-api-dev.shirazi-10f.workers.dev"]);IV=ne({field:v(),blocks:Ze(v()).optional(),set_on:Ze(v()).optional()}).passthrough(),AB=ne({apiKey:v().optional(),apiUrl:v().url().default(Ls),username:v().optional(),email:v().email().optional(),githubUsername:v().optional(),sandboxCompleted:Ue().optional(),sandboxDatasetId:v().optional(),dismissedNoticeIds:Ze(fe()).optional(),serviceAccess:Ue().optional(),profileGaps:Ze(IV).optional(),orcidVerified:Ue().optional(),role:v().optional(),accountKind:qn.optional(),pendingEmailChange:v().email().optional()});Nb=new Set;qV=["apiKey","apiUrl","username","email","githubUsername","sandboxCompleted","sandboxDatasetId","dismissedNoticeIds"]});var UV,FV,KB,VV,HB,zV,Ib,BB,WB=8,YB=100,Cb,XB,GV,JB;var jb=F(()=>{jn();nc();UV=["given_name","family_name","affiliation","city","country"],FV=["username","github_username","email","orcid"],KB=[...UV,...FV],VV={given_name:v().max(200).optional(),family_name:v().max(200).optional(),affiliation:v().max(500).optional(),city:v().max(200).optional(),country:v().max(200).optional(),username:v().max(100).optional(),github_username:v().max(100).optional(),email:v().max(320).optional(),orcid:v().max(40).optional()},HB=ne(VV),zV=Ve(["field_not_editable","owner_only_field","edit_own_account","owner_account","system_account","invalid_edit","orcid_already_proven","invalid_search","invalid_user_id"]),Ib=zV.options,BB=["exact","name","prefix","substring","fuzzy"],Cb=ne({id:fe().int(),username:v().nullable(),email:v(),github_username:v().nullable(),status:v(),role:v().nullable(),account_kind:qn.optional(),email_verified:fe().int().nullable().optional(),orcid:v().nullable().optional(),orcid_verified:fe().int().nullable().optional(),given_name:v().nullable().optional(),family_name:v().nullable().optional(),affiliation:v().nullable().optional(),city:v().nullable().optional(),country:v().nullable().optional(),description:v().nullable().optional(),signup_source:v().nullable().optional(),created_at:v(),updated_at:v().nullable().optional(),approved_at:v().nullable().optional(),revoked_at:v().nullable().optional(),deleted_at:v().nullable().optional(),service_access:fe().int().nullable().optional(),service_access_granted_at:v().nullable().optional(),service_access_granted_by:fe().int().nullable().optional(),upload_access_requested_at:v().nullable().optional(),upload_access_notified_at:v().nullable().optional(),identity_conflict:fe().int().nullable().optional(),username_auto_assigned:fe().int().nullable().optional(),sandbox_completed:fe().int().nullable().optional(),sandbox_completed_at:v().nullable().optional(),sandbox_dataset_id:v().nullable().optional(),aws_iam_username:v().nullable().optional(),dataset_count:fe().int().optional(),active_tokens:fe().int().optional(),linked_identities:Ze(v()).optional()}).passthrough(),XB=ne({user:Cb}).passthrough(),GV=ne({from:v().nullable(),to:v().nullable()}),JB=ne({message:v(),changed:wF(v(),GV),notes:Ze(v()).optional(),old_address_notified:Ue().optional(),user:Cb}).passthrough()});var e6=120,t6=64,r6="unnamed machine",KV=25,qb,n6,Us,Db,s6,o6,i6,HV,BV,a6,Zl,c6,u6,l6,d6,f6;var Mb=F(()=>{jn();qb=Ve(["authorization_pending","slow_down","expired_token","access_denied","invalid_grant"]),n6={authorization_pending:"Waiting for you to authorize this machine in the browser.",slow_down:"Polling too quickly; the CLI will slow down automatically.",expired_token:"The code expired. Run `nemar auth login` again for a new one.",access_denied:"This sign-in was declined in the browser. Run `nemar auth login` again if that was a mistake.",invalid_grant:"That code is no longer valid. Run `nemar auth login` again for a new one."},Us=Ve(["device_code_unknown","device_code_expired","device_code_used","device_code_denied","account_pending","account_revoked","identity_conflict","service_account","person_account","too_many_keys","key_not_found"]),Db=Us.options,s6={device_code_unknown:"That code was not found. Check the code shown in your terminal, or run `nemar auth login` again for a new one.",device_code_expired:"The code expired. Run `nemar auth login` again for a new one.",device_code_used:"That code has already been used. Run `nemar auth login` again for a new one.",device_code_denied:"This sign-in was declined in the browser. Run `nemar auth login` again if that was a mistake.",account_pending:"Verify your email address first. Check your inbox for the NEMAR verification code, then authorize again.",account_revoked:"Your NEMAR account access has been revoked. Contact the NEMAR team if you think this is a mistake.",identity_conflict:"This account shares an identifier with another NEMAR account and cannot sign in until that is resolved. Fix it in Settings on nemar.org or contact the NEMAR team.",service_account:"This is a service or test account, and it cannot sign in this way. Ask an owner to create a key for it with `nemar admin keys create`.",person_account:"This account belongs to a person. A person creates their own keys with `nemar auth login` or in Settings on nemar.org.",too_many_keys:`This account already has ${KV} active keys. Revoke one in Settings on nemar.org or with \`nemar auth keys\`, then try again.`,key_not_found:"That key was not found on this account, or it is already revoked. Run `nemar auth keys` to see the active ones."},o6=ne({error:Us,message:v()}).passthrough(),i6=ne({device_code:v(),user_code:v(),verification_uri:v(),verification_uri_complete:v(),expires_in:fe().int(),interval:fe().int()}).passthrough(),HV=Yw("error",[ne({error:In("authorization_pending"),message:v()}).passthrough(),ne({error:In("slow_down"),message:v()}).passthrough()]),BV=Yw("error",[ne({error:In("expired_token"),reason:Us,message:v()}).passthrough(),ne({error:In("access_denied"),reason:Us,message:v()}).passthrough(),ne({error:In("invalid_grant"),reason:Us,message:v()}).passthrough()]),a6=EF([HV,BV]),Zl=ne({id:fe().int(),name:v().nullable(),prefix:v(),created_at:v(),last_used_at:v().nullable(),current:Ue()}).passthrough(),c6=ne({api_key:v(),key:Zl,user:ne({username:v().nullable(),email:v(),github_username:v().nullable(),role:v(),sandbox_completed:Ue(),sandbox_dataset_id:v().nullable()}).passthrough()}).passthrough(),u6=ne({user_code:v(),machine_name:v(),requested_at:v(),expires_in:fe().int(),account:ne({username:v().nullable(),email_masked:v()}).passthrough(),refusal:ne({code:Us,message:v()}).passthrough().nullable()}).passthrough(),l6=ne({ok:In(!0),machine_name:v()}).passthrough(),d6=ne({keys:Ze(Zl)}).passthrough(),f6=ne({api_key:v(),key:Zl}).passthrough()});var WV,Lb,Ho="https://nemar.org/settings",m6,YV,XV,JV,g6,y6;var Ub=F(()=>{jn();WV=Ve(["orcid_in_use","orcid_already_linked","orcid_linked_other","email_in_use","github_in_use","identity_conflict_remains"]),Lb=WV.options,m6={orcid_in_use:`That ORCID iD already belongs to a NEMAR account. Sign in to that account instead; if you want the iD on a different account, unlink it there first (Settings, ${Ho}).`,orcid_already_linked:`That ORCID iD already belongs to a NEMAR account. Sign in to that account instead; if you want the iD on a different account, unlink it there first (Settings, ${Ho}).`,orcid_linked_other:`That ORCID iD is linked to a different NEMAR account. Unlink it there first (Settings, ${Ho}), then link it here.`,email_in_use:`That email address already belongs to a NEMAR account. Sign in to that account instead, or change its address first (Settings, ${Ho}).`,github_in_use:`That GitHub account is already linked to a NEMAR account. Sign in to that account instead, or change its GitHub username first (Settings, ${Ho}).`,identity_conflict_remains:"The collision that flagged this account is still there. Resolve it on the other account first (change its email or GitHub username, or unlink its ORCID iD), or delete that account, then clear the flag."},YV=Ve(["orcid","email","github"]),XV=ne({id:fe().int(),username:v().nullable(),email:v(),created_at:v(),has_oauth_identity:Ue(),dataset_count:fe().int(),identity_conflict:fe().int(),canonical:Ue()}).passthrough(),JV=ne({kind:YV,value:v(),canonical_user_id:fe().int(),accounts:Ze(XV)}).passthrough(),g6=ne({groups:Ze(JV),group_count:fe().int(),flagged_count:fe().int()}).passthrough(),y6=ne({ok:In(!0),id:fe().int(),cleared:Ue()}).passthrough()});function b6(e){return typeof e==="string"&&ZV.includes(e)}var QV,$6,E6,w6,ZV,e9="ci_check_unavailable",Fb,Vb,zb,S6="X-Approval-Dispatch-Token",x6;var Gb=F(()=>{jn();QV=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/,$6=v().regex(QV,"ORCID must be in format 0000-0000-0000-000X"),E6=Ve(["found","no_public_name","lookup_failed"]),w6=Ve(["bids_validation_failed","bids_validation_pending","bids_validation_in_progress","prescreen_failed","min_requirements_failed","owner_name_missing","identifier_screen_findings"]),ZV=["bids_validation_pending","bids_validation_in_progress"];Fb=[e9],Vb=["identifier_screen_pending","identifier_screen_not_clear","identifier_screen_not_applicable"],zb=["publication_review_not_clear","request_blocked","request_changed","request_mismatch","dispatch_superseded","dispatch_expired","decision_with_dispatch_token","approval_in_flight","deny_after_publishing","invalid_dataset_id","approval_closed_during_run"],x6=Ve(["filled","would_fill","no_public_name","lookup_failed","write_failed"])});function Hb(e){if(Kb)return;Kb=!0;let t=Nt.yellow("\u2500".repeat(60)),r=Nt.yellow.bold("[MAINTENANCE]"),n=Nt.dim(`mode: ${e.mode}`),s=e.eta?`
 ${Nt.dim(`eta:  ${e.eta}`)}`:"";process.stderr.write(`${t}
 ${r} ${e.message}
 ${n}${s}
 ${t}
-`)}var Kb=!1;var Bb=F(()=>{Ul()});function Wb(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(td)return ed;return hn().apiUrl||ed}async function L6(e,t={},r=!1,n){let s=`${Wb()}${e}`,o={"Content-Type":"application/json","X-CLI-Version":ac,...t.headers};if(r){let p=hn();if(!p.apiKey&&r===!0)throw new fr(401,"Not authenticated. Run 'nemar auth login' first.");if(p.apiKey)o.Authorization=`Bearer ${p.apiKey}`}let i=t.method||"GET",a=typeof t.body==="string"?t.body:void 0,c=Date.now(),u;try{u=await fetch(s,{...t,headers:o})}catch(p){if(lc())dc({method:i,url:s,status:null,durationMs:Date.now()-c,requestHeaders:o,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new fr(0,`Network error: Could not connect to ${Wb()}`,{originalError:p instanceof Error?p.message:String(p)})}let d;try{d=await u.text()}catch(p){if(lc())dc({method:i,url:s,status:u.status,durationMs:Date.now()-c,requestHeaders:o,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new fr(0,"Failed to read response body",{httpStatus:u.status,originalError:p instanceof Error?p.message:String(p)})}if(lc())dc({method:i,url:s,status:u.status,durationMs:Date.now()-c,requestHeaders:o,requestBody:a,responseBody:d});let l;try{l=JSON.parse(d)}catch{throw new fr(u.status,`Invalid response from server (status ${u.status})`)}if(!u.ok){if(u.status===503&&(l.mode==="read-only"||l.mode==="full")){let xt=typeof l.message==="string"?l.message:"NEMAR is in maintenance mode. Please retry shortly.",hr=typeof l.eta==="string"?l.eta:null,et=new Il(l.mode,xt,hr,l.details);throw Hb(et),et}let p=typeof l.block_reason==="string",f=Array.isArray(l.missing)?l.missing.filter((xt)=>typeof xt==="string"):void 0,h=typeof l.error==="string"&&(eb.includes(l.error)||Lb.includes(l.error)),m=typeof l.error==="string"&&(qb.options.includes(l.error)||Db.includes(l.error)),y=typeof l.error==="string"&&Jw.includes(l.error),_=typeof l.error==="string"&&Ib.includes(l.error),O=typeof l.error==="string"&&Vb.includes(l.error),T=typeof l.error==="string"&&Fb.includes(l.error),M=typeof l.error==="string"&&zb.includes(l.error),_e=p||T||M||h||m||y||_||O||f!==void 0&&typeof l.error==="string"&&Zw.includes(l.error)?l.message||l.error:l.error||l.message;if(u.status===404&&l.error==="Not Found"&&typeof l.message==="string")_e=`${l.message}. This NEMAR backend does not support this command yet.`;let ve=new fr(u.status,_e||"Request failed",l.details,typeof l.step==="string"?l.step:void 0,p?l.block_reason:void 0,f);if(typeof l.error==="string")ve.code=l.error;if(typeof l.reason==="string")ve.reason=l.reason;throw ve.rawBody=l,ve}if(n){let p=n.safeParse(l);if(!p.success)throw new fr(u.status,`Response for ${e} did not match the expected NEMAR contract`,{issues:p.error.issues});return p.data}return l}var ed="https://nemar-api-dev.sccn-org.workers.dev",td;var Yb=F(()=>{jb();Mb();Ub();Gb();nc();fc();Yl();Bb();Gl();Cl();td=ed.includes("workers.dev")});fc();import{open as c9,rm as u9}from"fs/promises";Yb();var Xb="NEMAR_DATA_HOSTS",t9="NEMAR_DATA_HOSTS_ONLY",r9="https://private.nemar.org",n9="https://private-test.nemar.org",s9=/^[a-z]{2,3}[0-9]{6}$/;function Jb(e){return s9.test(e)}function o9(e){return e}function Qb(e){return e==="127.0.0.1"||e==="localhost"||e==="[::1]"}function Zb(e){let t=e.trim();if(t===""||/[?#@]/.test(t))return null;let r;try{r=new URL(t)}catch{return null}if(r.username!==""||r.password!=="")return null;if(r.pathname!=="/")return null;if(r.protocol==="https:")return r.origin;if(r.protocol==="http:"&&Qb(r.hostname))return r.origin;return null}function eS(e){let t=[],r=[];for(let n of(e??"").split(",")){let s=n.trim();if(s==="")continue;let o=Zb(s);if(o===null)r.push(s);else if(!t.includes(o))t.push(o)}return{origins:t,rejected:r}}function tS(e){return e.env??process.env}function i9(e={}){let t=tS(e),r=e.isDevBuild??td,n=t[t9]==="1"?[]:[r?n9:r9],{origins:s}=eS(t[Xb]);return[...n,...s.filter((o)=>!n.includes(o))].map(o9)}function V6(e={}){return eS(tS(e)[Xb]).rejected}function hc(e,t={}){let r=Zb(e);if(r===null)return null;return i9(t).find((n)=>n===r)??null}function rS(e,t={}){return hc(e,t)!==null}function z6(e,t={}){let r;try{r=new URL(e)}catch{return null}if(r.username!==""||r.password!=="")return null;return hc(r.origin,t)}function nS(e,t){if(e.protocol==="https:")return!0;return e.protocol==="http:"&&Qb(e.hostname)&&new URL(t).protocol==="http:"}var a9="NEMAR_DATA_HOST_TIMEOUT_MS";function rd(e,t=process.env){let r=t[a9];if(r===void 0||!/^[0-9]+$/.test(r))return e;let n=Number(r);return n>0&&n<e?n:e}function nd(e){if(!(e instanceof Error))return"error";let t=e.code;return typeof t==="string"&&/^[A-Z][A-Z0-9_]+$/.test(t)?`${e.name} ${t}`:e.name}var sS=3,iS=60000,l9=262144,aS=255,cS=/^[A-Z0-9][A-Z0-9_]*-s([0-9]{1,16})(?:-S([0-9]{1,16})-C([0-9]{1,16}))?--[A-Za-z0-9._-]+$/;function uS(e){return e.length<=aS&&cS.test(e)}function d9(e){if(e.length>aS)return null;let t=cS.exec(e);if(!t||t[2]!==void 0)return null;let r=Number(t[1]);return Number.isSafeInteger(r)?r:null}function f9(e,t,r={}){if(!e)return{ok:!1,message:"The remote has no host setting."};if(!t)return{ok:!1,message:"The remote has no dataset setting."};if(!Jb(t))return{ok:!1,message:"The dataset setting is not a dataset id (two or three letters and six digits)."};let n=hc(e,r);if(n===null)return{ok:!1,message:`The host setting ${It(e)} is not an https origin on this CLI's list of data hosts. The remote's host setting is part of the repository, so it cannot add one.`};return{ok:!0,settings:{origin:n,dataset:t,options:r}}}function It(e,t=200){let r=e.replace(/[^\x20-\x7e]/g,"?");return r.length>t?`${r.slice(0,t)}...`:r}function p9(e,t){return new URL(`${e.origin}/o/${encodeURIComponent(e.dataset)}/${encodeURIComponent(t)}`)}function lS(e,t){if(t)return`The storage address was refused (status ${e}).`;if(e===401)return"The data host refused the API key. Run 'nemar auth login' to sign in again.";if(e===404)return"The data host has no such object, or this account has no access to the dataset.";if(e===429)return"The data host is limiting requests; try again shortly.";return`The data host answered status ${e}.`}async function dS(e,t,r,n,s,o){if(!rS(e.origin,e.options))return{kind:"failed",message:"The host is not on this CLI's list of data hosts."};let i=p9(e,t),a=!1;for(let c=0;;c++){let u={"Accept-Encoding":"identity"};if(i.origin===e.origin)u.Authorization=`Bearer ${r}`;let d;try{d=await fetch(i,{method:n,headers:u,redirect:"manual",signal:o})}catch(f){if(o.aborted)return{kind:"failed",message:"The request timed out."};return{kind:"failed",message:`Could not reach the host (${nd(f)}).`}}if(d.status<300||d.status>=400)return{kind:"response",response:d,redirected:a};if(await d.body?.cancel().catch(()=>{}),!s)return{kind:"response",response:d,redirected:a};if(c>=sS)return{kind:"failed",message:`More than ${sS} redirects.`};let l=d.headers.get("location");if(!l)return{kind:"failed",message:"A redirect named no address."};let p;try{p=new URL(l,i)}catch{return{kind:"failed",message:"A redirect named an address that is not a URL."}}if(!nS(p,e.origin))return{kind:"failed",message:"A redirect named an address that is not https."};i=p,a=!0}}async function fS(e,t){let r=new AbortController,n=setTimeout(()=>r.abort(),e),s=()=>{clearTimeout(n),n=setTimeout(()=>r.abort(),e)};try{return await t(r.signal,s)}finally{clearTimeout(n)}}async function h9(e,t,r,n,s){if(!uS(t))return{ok:!1,message:"The key is not one a data host serves."};let o=d9(t);return fS(rd(iS,e.options?.env),async(i,a)=>{let c=await dS(e,t,r,"GET",!0,i);if(c.kind==="failed")return{ok:!1,message:c.message};let{response:u,redirected:d}=c;if(u.status!==200||!u.body)return await u.body?.cancel().catch(()=>{}),{ok:!1,message:lS(u.status,d)};let l=u.headers.get("content-length");if(o!==null&&l!==null&&Number(l)!==o)return await u.body.cancel().catch(()=>{}),{ok:!1,message:`The object is ${It(l,20)} bytes but its key says ${o}.`};a();let p,f=0,h=0;try{p=await c9(n,"w");let m=u.body.getReader();while(!0){let{done:y,value:_}=await m.read();if(y)break;if(a(),f+=_.byteLength,o!==null&&f>o)throw await m.cancel().catch(()=>{}),new mc(`More bytes arrived than the key's ${o}.`);if(await p.write(_),f-h>=l9)h=f,s(f)}if(await p.close(),p=void 0,o!==null&&f!==o)throw new mc(`The object ended after ${f} bytes; its key says ${o}.`);if(f!==h)s(f);return{ok:!0,bytes:f}}catch(m){if(await p?.close().catch(()=>{}),await u9(n,{force:!0}).catch(()=>{}),m instanceof mc)return{ok:!1,message:m.message};if(i.aborted)return{ok:!1,message:"The transfer stalled and timed out."};return{ok:!1,message:`The transfer failed (${nd(m)}).`}}})}class mc extends Error{constructor(e){super(e);this.name="SizeError"}}async function m9(e,t,r){if(!uS(t))return{state:"unknown",message:"The key is not one a data host serves."};return fS(rd(iS,e.options?.env),async(n)=>{let s=await dS(e,t,r,"HEAD",!1,n);if(s.kind==="failed")return{state:"unknown",message:s.message};let{status:o}=s.response;if(await s.response.body?.cancel().catch(()=>{}),o===200)return{state:"present"};if(o===404)return{state:"absent"};return{state:"unknown",message:lS(o,!1)}})}class gc extends Error{constructor(e){super(e);this.name="ProtocolAbort"}}async function pS(e,t){let r=e.lines[Symbol.asyncIterator](),n=[],s=null,o=null,i=async()=>{let d=n.shift();if(d!==void 0)return d;let l=await r.next();return l.done?null:l.value},a=async(d)=>{await e.send(`GETCONFIG ${d}`);while(!0){let l=await r.next();if(l.done)throw new gc("git-annex closed the connection");let p=l.value;if(p==="VALUE"||p.startsWith("VALUE ")){let f=p.slice(5).trimStart();return f===""?void 0:f}if(p.startsWith("ERROR"))throw new gc(p);n.push(p)}},c=async()=>{let d=await a("host"),l=await a("dataset");return f9(d,l,t.options)},u=async(d,l)=>{if(!s||!o){await e.send(`TRANSFER-FAILURE RETRIEVE ${It(d)} The remote has not been prepared.`);return}let p=Promise.resolve(),f=await h9(s,d,o,l,(h)=>{p=p.then(()=>e.send(`PROGRESS ${h}`))});if(await p,f.ok)await e.send(`TRANSFER-SUCCESS RETRIEVE ${d}`);else await e.send(`TRANSFER-FAILURE RETRIEVE ${It(d)} ${It(f.message)}`)};await e.send("VERSION 1");while(!0){let d=await i();if(d===null)return 0;if(d.trim()==="")continue;let[l,...p]=oS(d,1),f=p[0]??"";try{switch(l){case"EXTENSIONS":await e.send("EXTENSIONS");break;case"INITREMOTE":{let h=await c();await e.send(h.ok?"INITREMOTE-SUCCESS":`INITREMOTE-FAILURE ${It(h.message)}`);break}case"PREPARE":{let h=await c();if(!h.ok){s=null,await e.send(`PREPARE-FAILURE ${It(h.message)}`);break}let m=t.loadApiKey();if(!m){s=null,await e.send("PREPARE-FAILURE No NEMAR API key is stored. Run 'nemar auth login' first.");break}s=h.settings,o=m,await e.send("PREPARE-SUCCESS");break}case"LISTCONFIGS":await e.send("CONFIG host The https origin of the NEMAR data host"),await e.send("CONFIG dataset The dataset id on that host"),await e.send("CONFIGEND");break;case"GETCOST":await e.send("COST 200");break;case"GETAVAILABILITY":await e.send("AVAILABILITY GLOBAL");break;case"GETINFO":if(s)await e.send("INFOFIELD host"),await e.send(`INFOVALUE ${s.origin}`),await e.send("INFOFIELD dataset"),await e.send(`INFOVALUE ${s.dataset}`);await e.send("INFOEND");break;case"EXPORTSUPPORTED":await e.send("EXPORTSUPPORTED-FAILURE");break;case"IMPORTSUPPORTED":await e.send("IMPORTSUPPORTED-FAILURE");break;case"WHEREIS":await e.send("WHEREIS-FAILURE");break;case"CLAIMURL":await e.send("CLAIMURL-FAILURE");break;case"CHECKURL":await e.send("CHECKURL-FAILURE");break;case"TRANSFER":{let[h,m,...y]=oS(f,2);if(h==="STORE")await e.send(`TRANSFER-FAILURE STORE ${It(m??"")} This remote is read-only for now.`);else if(h==="RETRIEVE"&&m&&y[0])await u(m,y[0]);else await e.send("UNSUPPORTED-REQUEST");break}case"CHECKPRESENT":{if(!f){await e.send("UNSUPPORTED-REQUEST");break}if(!s||!o){await e.send(`CHECKPRESENT-UNKNOWN ${It(f)} The remote has not been prepared.`);break}let h=await m9(s,f,o);if(h.state==="present")await e.send(`CHECKPRESENT-SUCCESS ${f}`);else if(h.state==="absent")await e.send(`CHECKPRESENT-FAILURE ${f}`);else await e.send(`CHECKPRESENT-UNKNOWN ${It(f)} ${h.message}`);break}case"REMOVE":await e.send(`REMOVE-FAILURE ${It(f)} This remote is read-only for now.`);break;case"ERROR":return 1;case"VALUE":break;default:await e.send("UNSUPPORTED-REQUEST")}}catch(h){if(h instanceof gc)return 1;throw h}}}function oS(e,t){let r=[],n=e;for(let s=0;s<t;s++){let o=n.indexOf(" ");if(o<0)break;r.push(n.slice(0,o)),n=n.slice(o+1)}return r.push(n),r}async function*g9(){let e=new TextDecoder,t="";for await(let r of Bun.stdin.stream()){t+=e.decode(r,{stream:!0});let n=t.indexOf(`
+`)}var Kb=!1;var Bb=F(()=>{Ul()});function Wb(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(td)return ed;return hn().apiUrl||ed}async function L6(e,t={},r=!1,n){let s=`${Wb()}${e}`,o={"Content-Type":"application/json","X-CLI-Version":ac,...t.headers};if(r){let p=hn();if(!p.apiKey&&r===!0)throw new fr(401,"Not authenticated. Run 'nemar auth login' first.");if(p.apiKey)o.Authorization=`Bearer ${p.apiKey}`}let i=t.method||"GET",a=typeof t.body==="string"?t.body:void 0,c=Date.now(),u;try{u=await fetch(s,{...t,headers:o})}catch(p){if(lc())dc({method:i,url:s,status:null,durationMs:Date.now()-c,requestHeaders:o,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new fr(0,`Network error: Could not connect to ${Wb()}`,{originalError:p instanceof Error?p.message:String(p)})}let d;try{d=await u.text()}catch(p){if(lc())dc({method:i,url:s,status:u.status,durationMs:Date.now()-c,requestHeaders:o,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new fr(0,"Failed to read response body",{httpStatus:u.status,originalError:p instanceof Error?p.message:String(p)})}if(lc())dc({method:i,url:s,status:u.status,durationMs:Date.now()-c,requestHeaders:o,requestBody:a,responseBody:d});let l;try{l=JSON.parse(d)}catch{throw new fr(u.status,`Invalid response from server (status ${u.status})`)}if(!u.ok){if(u.status===503&&(l.mode==="read-only"||l.mode==="full")){let xt=typeof l.message==="string"?l.message:"NEMAR is in maintenance mode. Please retry shortly.",hr=typeof l.eta==="string"?l.eta:null,et=new Il(l.mode,xt,hr,l.details);throw Hb(et),et}let p=typeof l.block_reason==="string",f=Array.isArray(l.missing)?l.missing.filter((xt)=>typeof xt==="string"):void 0,h=typeof l.error==="string"&&(eb.includes(l.error)||Lb.includes(l.error)),m=typeof l.error==="string"&&(qb.options.includes(l.error)||Db.includes(l.error)),y=typeof l.error==="string"&&Jw.includes(l.error),_=typeof l.error==="string"&&Ib.includes(l.error),O=typeof l.error==="string"&&Vb.includes(l.error),T=typeof l.error==="string"&&Fb.includes(l.error),M=typeof l.error==="string"&&zb.includes(l.error),_e=p||T||M||h||m||y||_||O||f!==void 0&&typeof l.error==="string"&&Zw.includes(l.error)?l.message||l.error:l.error||l.message;if(u.status===404&&l.error==="Not Found"&&typeof l.message==="string")_e=`${l.message}. This NEMAR backend does not support this command yet.`;let ve=new fr(u.status,_e||"Request failed",l.details,typeof l.step==="string"?l.step:void 0,p?l.block_reason:void 0,f);if(typeof l.error==="string")ve.code=l.error;if(typeof l.reason==="string")ve.reason=l.reason;throw ve.rawBody=l,ve}if(n){let p=n.safeParse(l);if(!p.success)throw new fr(u.status,`Response for ${e} did not match the expected NEMAR contract`,{issues:p.error.issues});return p.data}return l}var ed="https://api.nemar.org",td;var Yb=F(()=>{jb();Mb();Ub();Gb();nc();fc();Yl();Bb();Gl();Cl();td=ed.includes("workers.dev")});fc();import{open as c9,rm as u9}from"fs/promises";Yb();var Xb="NEMAR_DATA_HOSTS",t9="NEMAR_DATA_HOSTS_ONLY",r9="https://private.nemar.org",n9="https://private-test.nemar.org",s9=/^[a-z]{2,3}[0-9]{6}$/;function Jb(e){return s9.test(e)}function o9(e){return e}function Qb(e){return e==="127.0.0.1"||e==="localhost"||e==="[::1]"}function Zb(e){let t=e.trim();if(t===""||/[?#@]/.test(t))return null;let r;try{r=new URL(t)}catch{return null}if(r.username!==""||r.password!=="")return null;if(r.pathname!=="/")return null;if(r.protocol==="https:")return r.origin;if(r.protocol==="http:"&&Qb(r.hostname))return r.origin;return null}function eS(e){let t=[],r=[];for(let n of(e??"").split(",")){let s=n.trim();if(s==="")continue;let o=Zb(s);if(o===null)r.push(s);else if(!t.includes(o))t.push(o)}return{origins:t,rejected:r}}function tS(e){return e.env??process.env}function i9(e={}){let t=tS(e),r=e.isDevBuild??td,n=t[t9]==="1"?[]:[r?n9:r9],{origins:s}=eS(t[Xb]);return[...n,...s.filter((o)=>!n.includes(o))].map(o9)}function V6(e={}){return eS(tS(e)[Xb]).rejected}function hc(e,t={}){let r=Zb(e);if(r===null)return null;return i9(t).find((n)=>n===r)??null}function rS(e,t={}){return hc(e,t)!==null}function z6(e,t={}){let r;try{r=new URL(e)}catch{return null}if(r.username!==""||r.password!=="")return null;return hc(r.origin,t)}function nS(e,t){if(e.protocol==="https:")return!0;return e.protocol==="http:"&&Qb(e.hostname)&&new URL(t).protocol==="http:"}var a9="NEMAR_DATA_HOST_TIMEOUT_MS";function rd(e,t=process.env){let r=t[a9];if(r===void 0||!/^[0-9]+$/.test(r))return e;let n=Number(r);return n>0&&n<e?n:e}function nd(e){if(!(e instanceof Error))return"error";let t=e.code;return typeof t==="string"&&/^[A-Z][A-Z0-9_]+$/.test(t)?`${e.name} ${t}`:e.name}var sS=3,iS=60000,l9=262144,aS=255,cS=/^[A-Z0-9][A-Z0-9_]*-s([0-9]{1,16})(?:-S([0-9]{1,16})-C([0-9]{1,16}))?--[A-Za-z0-9._-]+$/;function uS(e){return e.length<=aS&&cS.test(e)}function d9(e){if(e.length>aS)return null;let t=cS.exec(e);if(!t||t[2]!==void 0)return null;let r=Number(t[1]);return Number.isSafeInteger(r)?r:null}function f9(e,t,r={}){if(!e)return{ok:!1,message:"The remote has no host setting."};if(!t)return{ok:!1,message:"The remote has no dataset setting."};if(!Jb(t))return{ok:!1,message:"The dataset setting is not a dataset id (two or three letters and six digits)."};let n=hc(e,r);if(n===null)return{ok:!1,message:`The host setting ${It(e)} is not an https origin on this CLI's list of data hosts. The remote's host setting is part of the repository, so it cannot add one.`};return{ok:!0,settings:{origin:n,dataset:t,options:r}}}function It(e,t=200){let r=e.replace(/[^\x20-\x7e]/g,"?");return r.length>t?`${r.slice(0,t)}...`:r}function p9(e,t){return new URL(`${e.origin}/o/${encodeURIComponent(e.dataset)}/${encodeURIComponent(t)}`)}function lS(e,t){if(t)return`The storage address was refused (status ${e}).`;if(e===401)return"The data host refused the API key. Run 'nemar auth login' to sign in again.";if(e===404)return"The data host has no such object, or this account has no access to the dataset.";if(e===429)return"The data host is limiting requests; try again shortly.";return`The data host answered status ${e}.`}async function dS(e,t,r,n,s,o){if(!rS(e.origin,e.options))return{kind:"failed",message:"The host is not on this CLI's list of data hosts."};let i=p9(e,t),a=!1;for(let c=0;;c++){let u={"Accept-Encoding":"identity"};if(i.origin===e.origin)u.Authorization=`Bearer ${r}`;let d;try{d=await fetch(i,{method:n,headers:u,redirect:"manual",signal:o})}catch(f){if(o.aborted)return{kind:"failed",message:"The request timed out."};return{kind:"failed",message:`Could not reach the host (${nd(f)}).`}}if(d.status<300||d.status>=400)return{kind:"response",response:d,redirected:a};if(await d.body?.cancel().catch(()=>{}),!s)return{kind:"response",response:d,redirected:a};if(c>=sS)return{kind:"failed",message:`More than ${sS} redirects.`};let l=d.headers.get("location");if(!l)return{kind:"failed",message:"A redirect named no address."};let p;try{p=new URL(l,i)}catch{return{kind:"failed",message:"A redirect named an address that is not a URL."}}if(!nS(p,e.origin))return{kind:"failed",message:"A redirect named an address that is not https."};i=p,a=!0}}async function fS(e,t){let r=new AbortController,n=setTimeout(()=>r.abort(),e),s=()=>{clearTimeout(n),n=setTimeout(()=>r.abort(),e)};try{return await t(r.signal,s)}finally{clearTimeout(n)}}async function h9(e,t,r,n,s){if(!uS(t))return{ok:!1,message:"The key is not one a data host serves."};let o=d9(t);return fS(rd(iS,e.options?.env),async(i,a)=>{let c=await dS(e,t,r,"GET",!0,i);if(c.kind==="failed")return{ok:!1,message:c.message};let{response:u,redirected:d}=c;if(u.status!==200||!u.body)return await u.body?.cancel().catch(()=>{}),{ok:!1,message:lS(u.status,d)};let l=u.headers.get("content-length");if(o!==null&&l!==null&&Number(l)!==o)return await u.body.cancel().catch(()=>{}),{ok:!1,message:`The object is ${It(l,20)} bytes but its key says ${o}.`};a();let p,f=0,h=0;try{p=await c9(n,"w");let m=u.body.getReader();while(!0){let{done:y,value:_}=await m.read();if(y)break;if(a(),f+=_.byteLength,o!==null&&f>o)throw await m.cancel().catch(()=>{}),new mc(`More bytes arrived than the key's ${o}.`);if(await p.write(_),f-h>=l9)h=f,s(f)}if(await p.close(),p=void 0,o!==null&&f!==o)throw new mc(`The object ended after ${f} bytes; its key says ${o}.`);if(f!==h)s(f);return{ok:!0,bytes:f}}catch(m){if(await p?.close().catch(()=>{}),await u9(n,{force:!0}).catch(()=>{}),m instanceof mc)return{ok:!1,message:m.message};if(i.aborted)return{ok:!1,message:"The transfer stalled and timed out."};return{ok:!1,message:`The transfer failed (${nd(m)}).`}}})}class mc extends Error{constructor(e){super(e);this.name="SizeError"}}async function m9(e,t,r){if(!uS(t))return{state:"unknown",message:"The key is not one a data host serves."};return fS(rd(iS,e.options?.env),async(n)=>{let s=await dS(e,t,r,"HEAD",!1,n);if(s.kind==="failed")return{state:"unknown",message:s.message};let{status:o}=s.response;if(await s.response.body?.cancel().catch(()=>{}),o===200)return{state:"present"};if(o===404)return{state:"absent"};return{state:"unknown",message:lS(o,!1)}})}class gc extends Error{constructor(e){super(e);this.name="ProtocolAbort"}}async function pS(e,t){let r=e.lines[Symbol.asyncIterator](),n=[],s=null,o=null,i=async()=>{let d=n.shift();if(d!==void 0)return d;let l=await r.next();return l.done?null:l.value},a=async(d)=>{await e.send(`GETCONFIG ${d}`);while(!0){let l=await r.next();if(l.done)throw new gc("git-annex closed the connection");let p=l.value;if(p==="VALUE"||p.startsWith("VALUE ")){let f=p.slice(5).trimStart();return f===""?void 0:f}if(p.startsWith("ERROR"))throw new gc(p);n.push(p)}},c=async()=>{let d=await a("host"),l=await a("dataset");return f9(d,l,t.options)},u=async(d,l)=>{if(!s||!o){await e.send(`TRANSFER-FAILURE RETRIEVE ${It(d)} The remote has not been prepared.`);return}let p=Promise.resolve(),f=await h9(s,d,o,l,(h)=>{p=p.then(()=>e.send(`PROGRESS ${h}`))});if(await p,f.ok)await e.send(`TRANSFER-SUCCESS RETRIEVE ${d}`);else await e.send(`TRANSFER-FAILURE RETRIEVE ${It(d)} ${It(f.message)}`)};await e.send("VERSION 1");while(!0){let d=await i();if(d===null)return 0;if(d.trim()==="")continue;let[l,...p]=oS(d,1),f=p[0]??"";try{switch(l){case"EXTENSIONS":await e.send("EXTENSIONS");break;case"INITREMOTE":{let h=await c();await e.send(h.ok?"INITREMOTE-SUCCESS":`INITREMOTE-FAILURE ${It(h.message)}`);break}case"PREPARE":{let h=await c();if(!h.ok){s=null,await e.send(`PREPARE-FAILURE ${It(h.message)}`);break}let m=t.loadApiKey();if(!m){s=null,await e.send("PREPARE-FAILURE No NEMAR API key is stored. Run 'nemar auth login' first.");break}s=h.settings,o=m,await e.send("PREPARE-SUCCESS");break}case"LISTCONFIGS":await e.send("CONFIG host The https origin of the NEMAR data host"),await e.send("CONFIG dataset The dataset id on that host"),await e.send("CONFIGEND");break;case"GETCOST":await e.send("COST 200");break;case"GETAVAILABILITY":await e.send("AVAILABILITY GLOBAL");break;case"GETINFO":if(s)await e.send("INFOFIELD host"),await e.send(`INFOVALUE ${s.origin}`),await e.send("INFOFIELD dataset"),await e.send(`INFOVALUE ${s.dataset}`);await e.send("INFOEND");break;case"EXPORTSUPPORTED":await e.send("EXPORTSUPPORTED-FAILURE");break;case"IMPORTSUPPORTED":await e.send("IMPORTSUPPORTED-FAILURE");break;case"WHEREIS":await e.send("WHEREIS-FAILURE");break;case"CLAIMURL":await e.send("CLAIMURL-FAILURE");break;case"CHECKURL":await e.send("CHECKURL-FAILURE");break;case"TRANSFER":{let[h,m,...y]=oS(f,2);if(h==="STORE")await e.send(`TRANSFER-FAILURE STORE ${It(m??"")} This remote is read-only for now.`);else if(h==="RETRIEVE"&&m&&y[0])await u(m,y[0]);else await e.send("UNSUPPORTED-REQUEST");break}case"CHECKPRESENT":{if(!f){await e.send("UNSUPPORTED-REQUEST");break}if(!s||!o){await e.send(`CHECKPRESENT-UNKNOWN ${It(f)} The remote has not been prepared.`);break}let h=await m9(s,f,o);if(h.state==="present")await e.send(`CHECKPRESENT-SUCCESS ${f}`);else if(h.state==="absent")await e.send(`CHECKPRESENT-FAILURE ${f}`);else await e.send(`CHECKPRESENT-UNKNOWN ${It(f)} ${h.message}`);break}case"REMOVE":await e.send(`REMOVE-FAILURE ${It(f)} This remote is read-only for now.`);break;case"ERROR":return 1;case"VALUE":break;default:await e.send("UNSUPPORTED-REQUEST")}}catch(h){if(h instanceof gc)return 1;throw h}}}function oS(e,t){let r=[],n=e;for(let s=0;s<t;s++){let o=n.indexOf(" ");if(o<0)break;r.push(n.slice(0,o)),n=n.slice(o+1)}return r.push(n),r}async function*g9(){let e=new TextDecoder,t="";for await(let r of Bun.stdin.stream()){t+=e.decode(r,{stream:!0});let n=t.indexOf(`
 `);while(n>=0)yield t.slice(0,n).replace(/\r$/,""),t=t.slice(n+1),n=t.indexOf(`
 `)}if(t+=e.decode(),t!=="")yield t}var sd=Bun.stdout.writer(),y9=await pS({lines:g9(),send:async(e)=>{sd.write(`${e}
 `),await sd.flush()}},{loadApiKey:()=>hn().apiKey||void 0});await sd.end();process.exit(y9);

package/dist/index.js CHANGED Viewed

@@ -99,18 +99,18 @@ ${t}`,FGe,MGe,jGe=(e,t,n)=>{let r=n===""?"":`with ${n.trim()}() `,o=NGe.bind(nul
 `)}var nN=!1;var{spawn:vpt}=globalThis.Bun;function Bf(e,t=[]){let n=e.replace(kpt,'("$1","<redacted>")');for(let r of t)if(r.length>=Ept)n=n.split(r).join("<redacted>");return n}function CS(e){let t=["AWS_SESSION_TOKEN","AWS_SECRET_ACCESS_KEY","AWS_ACCESS_KEY_ID"],n=new Set;for(let r of[process.env,e??{}])for(let o of t){let s=r[o];if(typeof s==="string"&&s.length>0)n.add(s)}return[...n]}async function Bfe(e,t){let n=e.getReader(),r=new TextDecoder,o="";while(!0){let{done:s,value:i}=await n.read();if(s)break;if(i.byteLength===0)continue;t(),o+=r.decode(i,{stream:!0})}return o+r.decode()}async function R(e,t={}){let n={...process.env,GIT_TERMINAL_PROMPT:"0",...t.env};for(let y of t.unsetEnv??[])delete n[y];let r=vpt({cmd:e,cwd:t.cwd,...t.stdin===void 0?{}:{stdin:new TextEncoder().encode(t.stdin)},stdout:"pipe",stderr:"pipe",env:n}),o=!1,s,i,a=performance.now(),c=()=>{if(i!==void 0)clearTimeout(i),i=void 0},l=()=>{if(!t.onInactivityWarning)return;c(),i=setTimeout(()=>{i=void 0;try{t.onInactivityWarning?.(performance.now()-a)}catch{console.error("Could not display subprocess inactivity warning; the child result is unaffected.")}},t.inactivityWarningAfterMs??Spt)};if(l(),t.timeout)s=setTimeout(()=>{o=!0,c(),r.kill()},t.timeout);let d=ig()?[...CS(n),...t.redact??[]]:[];if(ig()){let y=t.cwd?` (cwd=${t.cwd})`:"";hd(u.dim(Bf(`$ ${e.join(" ")}${y}`,d)))}let f=()=>{a=performance.now(),l()},p,m,h,g=r.exited.then((y)=>(c(),y));try{[p,m,h]=await Promise.all([Bfe(r.stdout,f),Bfe(r.stderr,f),g])}finally{if(c(),s)clearTimeout(s)}if(ig()){if(t.sensitiveOutput)hd(u.dim("[sensitive subprocess output suppressed]"));else{if(p.trim())hd(u.dim(Bf(p.trimEnd(),d)));if(m.trim())hd(u.yellow(Bf(m.trimEnd(),d)))}hd(u.dim(`(exit ${h})`))}if(o)return{stdout:p,stderr:m||`Command timed out after ${Math.round(t.timeout/1000)}s`,exitCode:h??1,timedOut:!0};return{stdout:p,stderr:m,exitCode:h,timedOut:!1}}var kpt,Ept=8,Spt=120000;var qt=z(()=>{He();kpt=/\(\s*"((?:x-amz-)[^"]*|authorization|proxy-authorization)"\s*,\s*"[^"]*"\s*\)/gi});function Dpt(){if(process.platform==="darwin")return"macos";if(process.platform==="win32")return"windows";return"linux"}function Hfe(e,t=Dpt()){return e.installInstructions[t]}function Rpt(e){let t=e.match(/(\d+\.\d+(?:\.\d+)?)/);return t?t[1]:void 0}function Apt(){let e=Number(process.env.TEST_PROBE_TIMEOUT_MS);return Number.isFinite(e)&&e>0?e:Cpt}async function Vfe(e){try{let{exitCode:t,stdout:n,timedOut:r}=await R(e.cmd,{timeout:Apt()});if(r)return{available:!1,timedOut:!0};if(t!==0)return{available:!1};return{available:!0,version:Rpt(n)}}catch(t){let n=t instanceof Error?t.message:String(t);if(!n.includes("ENOENT")&&!n.includes("not found"))console.error(`  Warning: ${e.name} check failed unexpectedly: ${n}`);return{available:!1}}}async function jb(){let e=Object.entries(Ufe);return Promise.all(e.map(async([t,n])=>{let{available:r,version:o,timedOut:s}=await Vfe(n);return{key:t,name:n.name,purpose:n.purpose,required:n.required,available:r,version:o,timedOut:s,installInstruction:Hfe(n)}}))}async function zfe(){let t=(await jb()).filter((n)=>n.required&&!n.available);if(t.length===0)return[];console.warn(`
 Heads up: some tools NEMAR needs for uploading/validating aren't installed yet:`);for(let n of t)console.warn(`  - ${n.name} (${n.purpose})`),console.warn(`      Install: ${n.installInstruction}`);return console.warn("Run `nemar doctor` anytime to re-check. You can finish signup without them.\n"),t}async function Uf(e){let n=$pt[e].map((i)=>Ufe[i]).filter(Boolean),r=await Promise.all(n.map(async(i)=>{let a=await Vfe(i);return{check:i,available:a.available,timedOut:a.timedOut}}));for(let i of r)if(i.timedOut&&i.check.required)console.warn(`Warning: ${i.check.name} did not respond to a version check in time; continuing anyway.`);let o=r.filter((i)=>!i.available&&!i.timedOut&&i.check.required).map((i)=>({tool:i.check.name,installInstruction:Hfe(i.check)}));if(o.length===0)return;let s=[`
 Missing required tools:`];for(let i of o)s.push(`  ${i.tool} not installed`),s.push(`    Install: ${i.installInstruction}`);throw Error(s.join(`
-`))}var Ufe,$pt,Cpt=4000;var Lb=z(()=>{qt();Ufe={git:{name:"git",purpose:"version control for dataset metadata",cmd:["git","--version"],required:!0,installInstructions:{macos:"brew install git  (or install Xcode Command Line Tools)",linux:"sudo apt-get install git  OR  sudo dnf install git",windows:"winget install Git.Git  (or https://git-scm.com/download/win)"}},"git-annex":{name:"git-annex",purpose:"large-file data transfer (upload/download)",cmd:["git-annex","version"],required:!0,installInstructions:{macos:"brew install git-annex",linux:"sudo apt-get install git-annex  OR  sudo dnf install git-annex",windows:"Download the installer from https://git-annex.branchable.com/install/Windows/"}},gh:{name:"GitHub CLI (gh)",purpose:"GitHub authentication + repository operations",cmd:["gh","--version"],required:!0,installInstructions:{macos:"brew install gh",linux:"See https://cli.github.com/manual/installation",windows:"winget install GitHub.cli  (or: scoop install gh)"}},aws:{name:"AWS CLI",purpose:"S3 data upload/download",cmd:["aws","--version"],required:!0,installInstructions:{macos:"brew install awscli",linux:"pip install awscli  OR  sudo snap install aws-cli --classic",windows:"winget install Amazon.AWSCLI  (or the MSI from https://aws.amazon.com/cli/)"}},deno:{name:"Deno",purpose:"BIDS validation",cmd:["deno","--version"],required:!0,installInstructions:{macos:"brew install deno  (or: curl -fsSL https://deno.land/install.sh | sh)",linux:"curl -fsSL https://deno.land/install.sh | sh",windows:"winget install DenoLand.Deno  (or: irm https://deno.land/install.ps1 | iex)"}}},$pt={upload:["git-annex","gh","aws","deno"],download:["gh"],clone:["git","gh"],push:["git-annex","gh"],publish:["gh","aws"],update:["git","gh"],release:["git","gh"]}});var Wfe;var Gfe=z(()=>{Wfe={name:"nemar-cli",packageManager:"bun@1.4.3",version:"0.10.27-dev.4112",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js","git-annex-remote-nemar":"dist/git-annex-remote-nemar.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts src/git-annex-remote-nemar.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:scrub":"biome check scripts/scrub shared/identifier-scrub.ts test/scrub","test:scrub":"bun test --preload ./test/scrub/helpers/temp-dirs-preload.ts --path-ignore-patterns='__run_every_scrub_suite__' test/scrub test/identifier-scan.test.ts test/identifier-scrub.test.ts test/identifier-dates.test.ts test/identifier-fleet.test.ts","migrations:d1-check":"bun run scripts/d1-migration-check.ts","zarr:geometry-check":"bun run backend/scripts/zarr-geometry-conformance.ts","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend","generate-openapi":"bun run scripts/generate-openapi.ts",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","scripts/recover-datasets.json","scripts/withdrawn-datasets.json","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1",inquirer:"^9.2.15",ora:"^8.0.1",semver:"^7.8.5",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},trustedDependencies:["@biomejs/biome"],devDependencies:{"@anthropic-ai/sdk":"^0.132.1","@asteasolutions/zod-to-openapi":"^7.3.4","@biomejs/biome":"1.9.4","@types/bun":"latest","@types/inquirer":"^9.0.7","@types/semver":"^7.8.0",ajv:"^8.20.0","ajv-formats":"^3.0.1",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var Ds;var Hf=z(()=>{Gfe();Ds=Wfe.version});import{mkdirSync as Tpt,readdirSync as Ppt,unlinkSync as Ipt,writeFileSync as Npt}from"fs";import{join as rN}from"path";function Zfe(){ag=!0}function ul(){return ag}function epe(e,t=process.env){return e.includes("--debug")||t.NEMAR_DEBUG==="1"}function Bb(e){Qfe=e,$n(`Step: ${e}`)}function Io(){Yfe=!0}function tpe(){return Yfe}function ce(){if(Xfe)return;sN=!0}function Ub(){sN=!1,Xfe=!0}function npe(){return sN}function $n(e){if(ag)process.stderr.write(`[debug] ${e}
+`))}var Ufe,$pt,Cpt=4000;var Lb=z(()=>{qt();Ufe={git:{name:"git",purpose:"version control for dataset metadata",cmd:["git","--version"],required:!0,installInstructions:{macos:"brew install git  (or install Xcode Command Line Tools)",linux:"sudo apt-get install git  OR  sudo dnf install git",windows:"winget install Git.Git  (or https://git-scm.com/download/win)"}},"git-annex":{name:"git-annex",purpose:"large-file data transfer (upload/download)",cmd:["git-annex","version"],required:!0,installInstructions:{macos:"brew install git-annex",linux:"sudo apt-get install git-annex  OR  sudo dnf install git-annex",windows:"Download the installer from https://git-annex.branchable.com/install/Windows/"}},gh:{name:"GitHub CLI (gh)",purpose:"GitHub authentication + repository operations",cmd:["gh","--version"],required:!0,installInstructions:{macos:"brew install gh",linux:"See https://cli.github.com/manual/installation",windows:"winget install GitHub.cli  (or: scoop install gh)"}},aws:{name:"AWS CLI",purpose:"S3 data upload/download",cmd:["aws","--version"],required:!0,installInstructions:{macos:"brew install awscli",linux:"pip install awscli  OR  sudo snap install aws-cli --classic",windows:"winget install Amazon.AWSCLI  (or the MSI from https://aws.amazon.com/cli/)"}},deno:{name:"Deno",purpose:"BIDS validation",cmd:["deno","--version"],required:!0,installInstructions:{macos:"brew install deno  (or: curl -fsSL https://deno.land/install.sh | sh)",linux:"curl -fsSL https://deno.land/install.sh | sh",windows:"winget install DenoLand.Deno  (or: irm https://deno.land/install.ps1 | iex)"}}},$pt={upload:["git-annex","gh","aws","deno"],download:["gh"],clone:["git","gh"],push:["git-annex","gh"],publish:["gh","aws"],update:["git","gh"],release:["git","gh"]}});var Wfe;var Gfe=z(()=>{Wfe={name:"nemar-cli",packageManager:"bun@1.4.3",version:"0.10.27",description:"CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",type:"module",main:"dist/index.js",bin:{nemar:"dist/index.js","git-annex-remote-nemar":"dist/git-annex-remote-nemar.js"},scripts:{dev:"bun run src/index.ts",build:"bun build src/index.ts src/git-annex-remote-nemar.ts --outdir dist --target bun --minify && sed '1s|#!/usr/bin/env node|#!/usr/bin/env bun|' dist/index.js > dist/index.js.tmp && mv dist/index.js.tmp dist/index.js",test:"bun test",lint:"biome check src/","lint:scrub":"biome check scripts/scrub shared/identifier-scrub.ts test/scrub","test:scrub":"bun test --preload ./test/scrub/helpers/temp-dirs-preload.ts --path-ignore-patterns='__run_every_scrub_suite__' test/scrub test/identifier-scan.test.ts test/identifier-scrub.test.ts test/identifier-dates.test.ts test/identifier-fleet.test.ts","migrations:d1-check":"bun run scripts/d1-migration-check.ts","zarr:geometry-check":"bun run backend/scripts/zarr-geometry-conformance.ts","lint:fix":"biome check --fix src/",format:"biome format --write src/",typecheck:"tsc --noEmit && tsc --noEmit -p backend","generate-openapi":"bun run scripts/generate-openapi.ts",prepublishOnly:"bun run build",prepare:"husky",postinstall:"bun scripts/postinstall-check.mjs",deploy:"wrangler deploy",preview:"wrangler dev"},keywords:["nemar","bids","neuroimaging","eeg","emg","datalad","cli"],author:"NEMAR Team",license:"CC-BY-NC-ND-4.0",repository:{type:"git",url:"git+https://github.com/nemarOrg/nemar-cli.git"},bugs:{url:"https://github.com/nemarOrg/nemar-cli/issues"},homepage:"https://docs.nemar.org",engines:{bun:">=1.0.0"},files:["dist","scripts/postinstall-check.mjs","scripts/recover-datasets.json","scripts/withdrawn-datasets.json","README.md","LICENSE"],dependencies:{chalk:"^5.3.0",commander:"^12.1.0",conf:"^13.0.1",inquirer:"^9.2.15",ora:"^8.0.1",semver:"^7.8.5",zod:"^3.23.8"},"lint-staged":{"src/**/*.{ts,tsx}":["biome check --fix"],"backend/src/**/*.{ts,tsx}":["biome check --fix"]},trustedDependencies:["@biomejs/biome"],devDependencies:{"@anthropic-ai/sdk":"^0.132.1","@asteasolutions/zod-to-openapi":"^7.3.4","@biomejs/biome":"1.9.4","@types/bun":"latest","@types/inquirer":"^9.0.7","@types/semver":"^7.8.0",ajv:"^8.20.0","ajv-formats":"^3.0.1",husky:"^9.1.7","lint-staged":"^16.3.2",typescript:"^5.5.4",wrangler:"^4.70.0",yaml:"^2.8.4"}}});var Ds;var Hf=z(()=>{Gfe();Ds=Wfe.version});import{mkdirSync as Tpt,readdirSync as Ppt,unlinkSync as Ipt,writeFileSync as Npt}from"fs";import{join as rN}from"path";function Zfe(){ag=!0}function ul(){return ag}function epe(e,t=process.env){return e.includes("--debug")||t.NEMAR_DEBUG==="1"}function Bb(e){Qfe=e,$n(`Step: ${e}`)}function Io(){Yfe=!0}function tpe(){return Yfe}function ce(){if(Xfe)return;sN=!0}function Ub(){sN=!1,Xfe=!0}function npe(){return sN}function $n(e){if(ag)process.stderr.write(`[debug] ${e}
 `)}function Lpt(e){let t={};for(let[n,r]of Object.entries(e))t[n]=jpt.has(n.toLowerCase())?"[REDACTED]":r;return t}function ope(e){let t=e.indexOf("@");if(t<=0)return"***";return`${e[0]}***${e.slice(t)}`}function oN(e,t,n=0){if(n>Bpt)return"[REDACTED: depth]";if(Array.isArray(t))return t.map((r)=>oN(e,r,n+1));if(t&&typeof t==="object"){let r={};for(let[o,s]of Object.entries(t))r[o]=oN(o,s,n+1);return r}if(typeof t==="string"){if(qpt.test(e))return"[REDACTED]";return t.replace(rpe,ope)}return t}function iN(e){return e.replace(Upt,"Bearer [REDACTED]").replace(Hpt,"[REDACTED_AWS_KEY]").replace(Vpt,"$1[REDACTED]").replace(zpt,"$1$2=[REDACTED]").replace(rpe,ope)}function Gpt(e){return iN(e)}function Kfe(e,t=Mpt){if(e===void 0)return;let n=e;try{let r=JSON.parse(e);n=JSON.stringify(oN("",r))}catch{}if(n=iN(n),Buffer.byteLength(n,"utf8")>t)n=`${Buffer.from(n,"utf8").subarray(0,t).toString("utf8")}... [truncated]`;return n}function TS(e){if(!ag)return;let t=Gpt(e.url);try{let n={...e,url:t,requestHeaders:e.requestHeaders?Lpt(e.requestHeaders):void 0,requestBody:Kfe(e.requestBody),responseBody:Kfe(e.responseBody)};OS.push(n),$n(`${e.method} ${t} -> ${e.status??"ERROR"} (${e.durationMs}ms)`)}catch(n){let r=G(n);OS.push({method:e.method,url:t,status:e.status,durationMs:e.durationMs,note:`redaction failed: ${r}`}),$n(`redaction failed for ${e.method} ${t}: ${r}`)}}async function Wpt(){let e=[];try{let t=process.versions.bun?`Bun ${process.versions.bun}`:`Node ${process.version}`;e.push(`CLI version: ${Ds}`),e.push(`OS/Arch: ${process.platform}/${process.arch}`),e.push(`Runtime: ${t}`)}catch(t){e.push(`(could not read CLI/OS/runtime info: ${G(t)})`)}e.push(""),e.push("Active account:");try{let t=zt();if(t.apiKey){if(t.username)e.push(`  Username: ${t.username}`);if(e.push(`  API URL: ${t.apiUrl}`),t.role)e.push(`  Role: ${t.role}`);e.push(`  Sandbox completed: ${!!t.sandboxCompleted}`)}else e.push("  (not authenticated)")}catch(t){e.push(`  (could not read account config: ${G(t)})`)}e.push(""),e.push("External tools:");try{let t=await jb();for(let n of t){let r=n.available?n.version??"installed":n.timedOut?"(timed out)":"not installed";e.push(`  ${n.name}: ${r}`)}}catch(t){e.push(`  (could not probe external tools: ${G(t)})`)}return e}async function aN(){return(await Wpt()).join(`
 `)}async function spe(){if(!ag||AS!==void 0)return;try{AS=await aN()}catch(e){let t=G(e);AS=`(could not build environment report: ${t})`,$n(`environment snapshot failed: ${t}`)}}function ipe(e){if(Jfe.has(e))return{flag:e};for(let t of Jfe){if(!e.startsWith(t)||e.length<=t.length)continue;if(t.length===2)return{flag:t,kind:"short-attached"};if(e[t.length]==="=")return{flag:t,kind:"long-eq"}}return null}function Kpt(e){let t=[];for(let n=0;n<e.length;n++){let r=e[n],o=ipe(r);if(!o){t.push(r);continue}if(o.kind==="long-eq")t.push(`${o.flag}=[REDACTED]`);else if(o.kind==="short-attached")t.push(`${o.flag}[REDACTED]`);else if(t.push(r),n+1<e.length)t.push("[REDACTED]"),n++}return t}function Jpt(e){let t=[];for(let n=0;n<e.length;n++){let r=e[n],o=ipe(r);if(!o){t.push(r);continue}if(!o.kind&&n+1<e.length)n++}return t}function Ypt(e){let t=[];for(let r of Jpt(e)){if(r.startsWith("-"))continue;if(t.push(r),t.length===2)break}return(t.length>0?t.join("-"):"nemar").replace(/[^a-zA-Z0-9_-]/g,"_")}function Xpt(e,t){let n=[];if(n.push("NEMAR CLI Debug Log"),n.push(`Generated: ${new Date().toISOString()}`),n.push(`Command: nemar ${iN(Kpt(e).join(" "))}`),n.push(""),n.push(AS??"(environment snapshot unavailable)"),n.push(""),n.push("HTTP requests:"),OS.length===0)n.push("  (none)");else OS.forEach((r,o)=>{if(n.push(`  [${o+1}] ${r.method} ${r.url} -> ${r.status??"ERROR"} (${r.durationMs}ms)`),r.error)n.push(`      Error: ${r.error}`);if(r.note)n.push(`      Note: ${r.note}`);if(r.requestHeaders)n.push(`      Request headers: ${JSON.stringify(r.requestHeaders)}`);if(r.requestBody)n.push(`      Request body: ${r.requestBody}`);if(r.responseBody)n.push(`      Response body: ${r.responseBody}`)});return n.push(""),n.push(`Failing step: ${Qfe??"(none recorded)"}`),n.push(`Exit code: ${t}`),`${n.join(`
 `)}
 `}function Qpt(e,t){let n;try{n=Ppt(e).filter((o)=>o.startsWith("nemar-")&&o.endsWith(".log"))}catch(o){if(o.code!=="ENOENT")$n(`could not list ${e} for log rotation: ${G(o)}`);return}n.sort();let r=n.length-t;for(let o=0;o<r;o++)try{Ipt(rN(e,n[o]))}catch(s){if(s.code!=="ENOENT")$n(`could not remove old log ${n[o]}: ${G(s)}`)}}function ape(){return qb}function cpe(e,t){if(!ag)return null;let n=rN(Jn(),"logs");try{Tpt(n,{recursive:!0})}catch(i){return qb=G(i),$n(`could not create log directory ${n}: ${qb}`),null}let o=`nemar-${new Date().toISOString().replace(/[:.]/g,"-")}-${Ypt(e)}.log`,s=rN(n,o);try{Npt(s,Xpt(e,t),"utf8")}catch(i){return qb=G(i),$n(`could not write log file ${s}: ${qb}`),null}return Qpt(n,Fpt),s}var Fpt=10,Mpt=2048,ag=!1,Yfe=!1,sN=!1,Xfe=!1,Qfe,AS,OS,jpt,qpt,rpe,Bpt=32,Upt,Hpt,Vpt,zpt,Jfe,qb;var fn=z(()=>{ze();xr();Lb();Hf();OS=[];jpt=new Set(["authorization","cookie","set-cookie","x-api-key","x-approval-dispatch-token"]);qpt=/^(api[_-]?key|apikey|password|token|secret|access[_-]?key(_id)?|secret[_-]?access[_-]?key|session|session[_-]?token|authorization|ssh[_-]?key|private[_-]?key|device[_-]?code|dispatch[_-]?token)$/i,rpe=/[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/g;Upt=/Bearer\s+[A-Za-z0-9\-._~+/=]+/gi,Hpt=/\b(?:AKIA|ASIA)[0-9A-Z]{16}\b/g,Vpt=/((?:aws_)?secret_access_key["']?\s*[:=]\s*["']?)[A-Za-z0-9/+=]{20,}/gi,zpt=/([?&])(X-Amz-Signature|X-Amz-Security-Token|X-Amz-Credential|Signature|AWSAccessKeyId)=[^&\s"']+/gi;Jfe=new Set(["-k","--key","--password","--api-key"])});import{chmodSync as Zpt,copyFileSync as emt,existsSync as cN,mkdirSync as tmt,statSync as nmt}from"fs";import{homedir as PS}from"os";import{join as cg}from"path";function omt(e){let t=e.trim().replace(/\/+$/,"");try{let n=new URL(t);return n.protocol=n.protocol.toLowerCase(),n.host=n.host.toLowerCase(),n.toString().replace(/\/+$/,"")}catch{return console.error(`[nemar] could not parse stored apiUrl ${JSON.stringify(e)}; leaving as-is`),t}}function Jn(){return process.env.NEMAR_CONFIG_DIR||cg(PS(),".config","nemar")}function imt(e){if(process.env.NEMAR_CONFIG_DIR)return;let t=cg(e,"config.json");if(cN(t))return;let n=[];if(process.platform==="darwin")n.push(cg(PS(),"Library","Preferences","nemar-nodejs","config.json"));if(process.platform==="win32"){let r=process.env.APPDATA||cg(PS(),"AppData","Roaming");n.push(cg(r,"nemar-nodejs","config.json"))}n.push(cg(PS(),".config","nemar-nodejs","config.json"));for(let r of n)if(cN(r))try{tmt(e,{recursive:!0}),emt(r,t),console.error(`[nemar] Config migrated from ${r} to ${t}
 [nemar] You can safely remove the old file.`);return}catch(o){console.error(`[nemar] Failed to migrate config from ${r}:`,o,`
-[nemar] You can manually copy ${r} to ${t}`)}}function ui(){let e=Jn();if(Hb&&lpe===e)return Hb;if(imt(e),Hb=new RS({projectName:"nemar",configFileMode:lN,schema:{activeAccount:{type:"string"},accounts:{type:"object"},apiKey:{type:"string"},apiUrl:{type:"string"},username:{type:"string"},email:{type:"string"},githubUsername:{type:"string"},sandboxCompleted:{type:"boolean"},sandboxDatasetId:{type:"string"}},cwd:e}),lpe=e,!upe.has(e))upe.add(e),amt(Hb.path),lmt(),umt();return Hb}function amt(e){if(process.platform==="win32")return;if(!cN(e))return;try{if((nmt(e).mode&511)!==lN)Zpt(e,lN)}catch(t){console.error(`[nemar] could not secure config file permissions for ${e}:`,t)}}function lmt(){let e=ui(),t=e.get("accounts");if(t&&Object.keys(t).length>0)return;let n=e.get("apiKey"),r=e.get("username");if(!n&&!r)return;try{let o=r||"default",s={};for(let i of cmt){let a=e.get(i);if(a!==void 0)s[i]=a}e.store={activeAccount:o,accounts:{[o]:s}}}catch(o){console.error("Config migration failed (legacy config preserved):",o)}}function umt(){let e=ui(),t=e.store,n=t.accounts,r=!1;if(n)for(let[s,i]of Object.entries(n)){let a=i?.apiUrl;if(!a)continue;if(rmt.has(omt(a)))n[s]={...i,apiUrl:lg},console.error(`[nemar] migrated stored apiUrl for account "${s}": ${a} -> ${lg}`),r=!0}let o=t.apiUrl;if(n&&Object.keys(n).length>0&&o!==void 0){let{apiUrl:s,...i}=t;try{e.store=i,console.error(`[nemar] removed stale top-level apiUrl from config (was: ${o})`),r=!1}catch(a){console.error("API URL cleanup failed (config file unchanged):",a)}}if(r)try{e.store={...e.store,accounts:n}}catch(s){console.error("API URL migration failed (config file unchanged):",s)}}function Vb(){return ui().get("activeAccount")}function gd(){return ui().get("accounts")||{}}function zt(){let e={apiUrl:lg},t=Vb();if(!t)return e;return gd()[t]||e}function Tn(e,t){let n=ui(),r=n.get("activeAccount")||"default",o=n.get("accounts")||{};if(!o[r])o[r]={apiUrl:lg};o[r][e]=t,n.store={...n.store,accounts:o,activeAccount:r}}function zb(e){let t=Vb();if(!t)return;let n=gd();if(n[t])delete n[t][e],ui().set("accounts",n)}function dpe(){let e=ui(),t=Vb();if(!t){e.clear();return}let n=gd();delete n[t];let r=Object.keys(n);if(r.length>0)e.store={...e.store,accounts:n,activeAccount:r[0]};else e.clear()}function fpe(){ui().clear()}function Ve(){return!!zt().apiKey}function uN(){return ui().path}function Gb(){let e=gd(),t=Vb();return Object.entries(e).map(([n,r])=>({key:n,username:r.username,email:r.email,githubUsername:r.githubUsername,active:n===t,keySource:r.keySource}))}function ppe(e){return e.username?.trim()||e.email}function dmt(e){let t=e.trim().toLowerCase();if(!t)return;let n=Object.entries(gd()).filter(([,r])=>r.email&&r.email.toLowerCase()===t).map(([r])=>r);if(n.length>1){$n(`findAccountKeyByEmail: ${n.length} accounts share email ${t}: ${n.join(", ")}`);return}return n[0]}function mpe(e,t){let n=ui(),r=gd(),o;if(r[e])o=e;else if(t.email)o=dmt(t.email);let s=o?r[o]:void 0,i={...s??{apiUrl:lg},...t};if(o&&o!==e)delete r[o];return r[e]=i,n.store={...n.store,accounts:r,activeAccount:e},{key:e,previous:s}}function hpe(e){let t=e.trim();if(!t)return"unchanged";let n=ui(),r=Vb();if(!r||r===t)return"unchanged";let o=gd(),s=o[r];if(!s)return"unchanged";if(o[t])return"key_taken";return delete o[r],o[t]={...s,username:t},n.store={...n.store,accounts:o,activeAccount:t},"renamed"}function dN(e){let t=ui(),n=gd();if(n[e])return t.store={...t.store,activeAccount:e},n[e];for(let[r,o]of Object.entries(n))if(o.githubUsername===e)return t.store={...t.store,activeAccount:r},o;return null}var lg="https://nemar-api-dev.sccn-org.workers.dev",lN=384,rmt,smt,vWt,Hb=null,lpe=null,upe,cmt;var xr=z(()=>{Lfe();Zo();ah();fn();rmt=new Set(["https://api.osc.earth/nemar","https://nemar-api.neuromechanist.workers.dev","https://nemar-api-dev.shirazi-10f.workers.dev"]);smt=te({field:S(),blocks:he(S()).optional(),set_on:he(S()).optional()}).passthrough(),vWt=te({apiKey:S().optional(),apiUrl:S().url().default(lg),username:S().optional(),email:S().email().optional(),githubUsername:S().optional(),sandboxCompleted:Ye().optional(),sandboxDatasetId:S().optional(),dismissedNoticeIds:he(j()).optional(),serviceAccess:Ye().optional(),profileGaps:he(smt).optional(),orcidVerified:Ye().optional(),role:S().optional(),accountKind:Df.optional(),pendingEmailChange:S().email().optional()});upe=new Set;cmt=["apiKey","apiUrl","username","email","githubUsername","sandboxCompleted","sandboxDatasetId","dismissedNoticeIds"]});function IS(e){if(gpe)return;gpe=!0;let t=u.yellow("\u2500".repeat(60)),n=u.yellow.bold("[MAINTENANCE]"),r=u.dim(`mode: ${e.mode}`),o=e.eta?`
+[nemar] You can manually copy ${r} to ${t}`)}}function ui(){let e=Jn();if(Hb&&lpe===e)return Hb;if(imt(e),Hb=new RS({projectName:"nemar",configFileMode:lN,schema:{activeAccount:{type:"string"},accounts:{type:"object"},apiKey:{type:"string"},apiUrl:{type:"string"},username:{type:"string"},email:{type:"string"},githubUsername:{type:"string"},sandboxCompleted:{type:"boolean"},sandboxDatasetId:{type:"string"}},cwd:e}),lpe=e,!upe.has(e))upe.add(e),amt(Hb.path),lmt(),umt();return Hb}function amt(e){if(process.platform==="win32")return;if(!cN(e))return;try{if((nmt(e).mode&511)!==lN)Zpt(e,lN)}catch(t){console.error(`[nemar] could not secure config file permissions for ${e}:`,t)}}function lmt(){let e=ui(),t=e.get("accounts");if(t&&Object.keys(t).length>0)return;let n=e.get("apiKey"),r=e.get("username");if(!n&&!r)return;try{let o=r||"default",s={};for(let i of cmt){let a=e.get(i);if(a!==void 0)s[i]=a}e.store={activeAccount:o,accounts:{[o]:s}}}catch(o){console.error("Config migration failed (legacy config preserved):",o)}}function umt(){let e=ui(),t=e.store,n=t.accounts,r=!1;if(n)for(let[s,i]of Object.entries(n)){let a=i?.apiUrl;if(!a)continue;if(rmt.has(omt(a)))n[s]={...i,apiUrl:lg},console.error(`[nemar] migrated stored apiUrl for account "${s}": ${a} -> ${lg}`),r=!0}let o=t.apiUrl;if(n&&Object.keys(n).length>0&&o!==void 0){let{apiUrl:s,...i}=t;try{e.store=i,console.error(`[nemar] removed stale top-level apiUrl from config (was: ${o})`),r=!1}catch(a){console.error("API URL cleanup failed (config file unchanged):",a)}}if(r)try{e.store={...e.store,accounts:n}}catch(s){console.error("API URL migration failed (config file unchanged):",s)}}function Vb(){return ui().get("activeAccount")}function gd(){return ui().get("accounts")||{}}function zt(){let e={apiUrl:lg},t=Vb();if(!t)return e;return gd()[t]||e}function Tn(e,t){let n=ui(),r=n.get("activeAccount")||"default",o=n.get("accounts")||{};if(!o[r])o[r]={apiUrl:lg};o[r][e]=t,n.store={...n.store,accounts:o,activeAccount:r}}function zb(e){let t=Vb();if(!t)return;let n=gd();if(n[t])delete n[t][e],ui().set("accounts",n)}function dpe(){let e=ui(),t=Vb();if(!t){e.clear();return}let n=gd();delete n[t];let r=Object.keys(n);if(r.length>0)e.store={...e.store,accounts:n,activeAccount:r[0]};else e.clear()}function fpe(){ui().clear()}function Ve(){return!!zt().apiKey}function uN(){return ui().path}function Gb(){let e=gd(),t=Vb();return Object.entries(e).map(([n,r])=>({key:n,username:r.username,email:r.email,githubUsername:r.githubUsername,active:n===t,keySource:r.keySource}))}function ppe(e){return e.username?.trim()||e.email}function dmt(e){let t=e.trim().toLowerCase();if(!t)return;let n=Object.entries(gd()).filter(([,r])=>r.email&&r.email.toLowerCase()===t).map(([r])=>r);if(n.length>1){$n(`findAccountKeyByEmail: ${n.length} accounts share email ${t}: ${n.join(", ")}`);return}return n[0]}function mpe(e,t){let n=ui(),r=gd(),o;if(r[e])o=e;else if(t.email)o=dmt(t.email);let s=o?r[o]:void 0,i={...s??{apiUrl:lg},...t};if(o&&o!==e)delete r[o];return r[e]=i,n.store={...n.store,accounts:r,activeAccount:e},{key:e,previous:s}}function hpe(e){let t=e.trim();if(!t)return"unchanged";let n=ui(),r=Vb();if(!r||r===t)return"unchanged";let o=gd(),s=o[r];if(!s)return"unchanged";if(o[t])return"key_taken";return delete o[r],o[t]={...s,username:t},n.store={...n.store,accounts:o,activeAccount:t},"renamed"}function dN(e){let t=ui(),n=gd();if(n[e])return t.store={...t.store,activeAccount:e},n[e];for(let[r,o]of Object.entries(n))if(o.githubUsername===e)return t.store={...t.store,activeAccount:r},o;return null}var lg="https://api.nemar.org",lN=384,rmt,smt,vWt,Hb=null,lpe=null,upe,cmt;var xr=z(()=>{Lfe();Zo();ah();fn();rmt=new Set(["https://api.osc.earth/nemar","https://nemar-api.neuromechanist.workers.dev","https://nemar-api-dev.shirazi-10f.workers.dev"]);smt=te({field:S(),blocks:he(S()).optional(),set_on:he(S()).optional()}).passthrough(),vWt=te({apiKey:S().optional(),apiUrl:S().url().default(lg),username:S().optional(),email:S().email().optional(),githubUsername:S().optional(),sandboxCompleted:Ye().optional(),sandboxDatasetId:S().optional(),dismissedNoticeIds:he(j()).optional(),serviceAccess:Ye().optional(),profileGaps:he(smt).optional(),orcidVerified:Ye().optional(),role:S().optional(),accountKind:Df.optional(),pendingEmailChange:S().email().optional()});upe=new Set;cmt=["apiKey","apiUrl","username","email","githubUsername","sandboxCompleted","sandboxDatasetId","dismissedNoticeIds"]});function IS(e){if(gpe)return;gpe=!0;let t=u.yellow("\u2500".repeat(60)),n=u.yellow.bold("[MAINTENANCE]"),r=u.dim(`mode: ${e.mode}`),o=e.eta?`
 ${u.dim(`eta:  ${e.eta}`)}`:"";process.stderr.write(`${t}
 ${n} ${e.message}
 ${r}${o}
 ${t}
-`)}var gpe=!1;var fN=z(()=>{He()});function Ir(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(Vf)return pN;return zt().apiUrl||pN}async function q(e,t={},n=!1,r){let o=`${Ir()}${e}`,s={"Content-Type":"application/json","X-CLI-Version":Ds,...t.headers};if(n){let p=zt();if(!p.apiKey&&n===!0)throw new L(401,"Not authenticated. Run 'nemar auth login' first.");if(p.apiKey)s.Authorization=`Bearer ${p.apiKey}`}let i=t.method||"GET",a=typeof t.body==="string"?t.body:void 0,c=Date.now(),l;try{l=await fetch(o,{...t,headers:s})}catch(p){if(ul())TS({method:i,url:o,status:null,durationMs:Date.now()-c,requestHeaders:s,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new L(0,`Network error: Could not connect to ${Ir()}`,{originalError:p instanceof Error?p.message:String(p)})}let d;try{d=await l.text()}catch(p){if(ul())TS({method:i,url:o,status:l.status,durationMs:Date.now()-c,requestHeaders:s,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new L(0,"Failed to read response body",{httpStatus:l.status,originalError:p instanceof Error?p.message:String(p)})}if(ul())TS({method:i,url:o,status:l.status,durationMs:Date.now()-c,requestHeaders:s,requestBody:a,responseBody:d});let f;try{f=JSON.parse(d)}catch{throw new L(l.status,`Invalid response from server (status ${l.status})`)}if(!l.ok){if(l.status===503&&(f.mode==="read-only"||f.mode==="full")){let V=typeof f.message==="string"?f.message:"NEMAR is in maintenance mode. Please retry shortly.",A=typeof f.eta==="string"?f.eta:null,F=new Cu(f.mode,V,A,f.details);throw IS(F),F}let p=typeof f.block_reason==="string",m=Array.isArray(f.missing)?f.missing.filter((V)=>typeof V==="string"):void 0,h=typeof f.error==="string"&&(dZ.includes(f.error)||RZ.includes(f.error)),g=typeof f.error==="string"&&(fk.options.includes(f.error)||PZ.includes(f.error)),y=typeof f.error==="string"&&sZ.includes(f.error),b=typeof f.error==="string"&&fZ.includes(f.error),_=typeof f.error==="string"&&SZ.includes(f.error),x=typeof f.error==="string"&&EZ.includes(f.error),k=typeof f.error==="string"&&$Z.includes(f.error),C=p||x||k||h||g||y||b||_||m!==void 0&&typeof f.error==="string"&&uZ.includes(f.error)?f.message||f.error:f.error||f.message;if(l.status===404&&f.error==="Not Found"&&typeof f.message==="string")C=`${f.message}. This NEMAR backend does not support this command yet.`;let T=new L(l.status,C||"Request failed",f.details,typeof f.step==="string"?f.step:void 0,p?f.block_reason:void 0,m);if(typeof f.error==="string")T.code=f.error;if(typeof f.reason==="string")T.reason=f.reason;throw T.rawBody=f,T}if(r){let p=r.safeParse(f);if(!p.success)throw new L(l.status,`Response for ${e} did not match the expected NEMAR contract`,{issues:p.error.issues});return p.data}return f}var pN="https://nemar-api-dev.sccn-org.workers.dev",Vf;var yo=z(()=>{Q0();hk();LT();Z0();ah();xr();fn();fN();Hf();ze();Vf=pN.includes("workers.dev")});async function ug(e,t={}){return q(`/datasets/${e}/publish/request`,t.anonymous?{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({anonymous:!0})}:{method:"POST"},!0)}async function dg(e){return q(`/datasets/${e}/publish/status`,{},!0)}async function wpe(e){return q(`/datasets/${e}/publish/resend`,{method:"POST"},!0)}async function _pe(e){return q(`/datasets/${e}/publish/withdraw`,{method:"POST"},!0)}async function zf(e={}){let{statuses:t,search:n}=typeof e==="string"?{statuses:e?[e]:[]}:e,r=await ype(t,n),o=r;if(t!==void 0&&t.length>1&&r.requests.length===0){let s=[];for(let a of new Set(t))s.push(await ype([a],n));let i=s.flatMap((a)=>a.requests).sort(xpe);o={...r,requests:i,count:i.length}}return n?fmt(o,n):o}function xpe(e,t){return e.requested_at<t.requested_at?1:e.requested_at>t.requested_at?-1:0}async function ype(e,t){let n=new URLSearchParams;if(e&&e.length>0)n.set("status",e.join(","));if(t)n.set("search",t);let r=n.size>0?`?${n}`:"";return q(`/admin/publish/requests${r}`,{},!0)}function fmt(e,t){let n=e.requests.filter((s)=>oee(t,[s.dataset_id,s.requested_by_username,s.dataset_name])),r=(s)=>see(s.dataset_id,t)?0:1,o=[...n].sort((s,i)=>r(s)-r(i)||xpe(s,i));return{...e,requests:o,count:o.length}}async function fg(e,t,n){return q(`/admin/publish/${e}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:t,...n!==void 0?{request_id:n}:{}})},!0)}async function NS(e){return q(`/admin/publish/${e}/identifier-screen`,{method:"POST"},!0)}async function FS(e){return q(`/admin/publish/${e}/review`,{},!0)}async function vpe(e){return q(`/admin/publish/${e}/review/start`,{method:"POST"},!0)}async function kpe(e,t){let n={message:t};return q(`/admin/publish/${e}/comment`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(n)},!0)}function pg(e){if(!(e instanceof L))return;let t=e.rawBody;if(typeof t!=="object"||t===null||Array.isArray(t))return;let n=t.code;return typeof n==="string"?n:void 0}function pmt(e,t=[]){if(e){let n=Da.indexOf(e);if(n>=0)return n+1}return Math.min(t.length+1,Da.length)}function mmt(e){if(!(e instanceof L))return!1;if(e.statusCode===0)return!0;if(e.statusCode===429)return!0;if(e.statusCode>=500&&e.statusCode<600)return!0;if(e.statusCode===403&&/repository has been locked/i.test(e.message))return!0;return!1}function hmt(){let e=process.env.NEMAR_APPROVE_RETRY_DELAY_MS;if(e===void 0||!/^\d+$/.test(e))return Dk;let t=Number(e);return Number.isSafeInteger(t)&&t<=Dk?t:Dk}async function mg(e,t=!1,n=!1,r=!1,o,s,i,a,c){let d=hmt(),f,p,m=0,h=!1,g,y=t,b=[],_;function x(k,v,C,T){if(!s)return;s({step:k,stepIndex:pmt(k,v),stepTotal:Da.length,s3LockLocked:C,s3LockTotal:T,s3LockResumed:k==="s3_lock"&&h?!0:void 0})}for(let k=1;k<=5;k++)try{let v,C=!0;do{if(v=await q(`/admin/publish/${e}/approve`,{method:"POST",headers:{"Content-Type":"application/json",...c?.dispatchToken?{[DZ]:c.dispatchToken}:{}},body:JSON.stringify({resume:C?y:!0,sandbox:n,s3_lock_continuation_token:f,s3_lock_total:p,skip_ci_check:r,...i!==void 0?{acknowledge_identifier_screen:i}:{},...a!==void 0?{[tee]:a}:{},...c?.requestId!==void 0?{request_id:c.requestId}:{}})},!0),C=!1,v.step_results)b.push(...v.step_results);if(v.s3_lock_total!==void 0)p=v.s3_lock_total;if(v.s3_lock_batch_count!==void 0)m+=v.s3_lock_batch_count;let T=v.step??v.step_results?.[v.step_results.length-1]?.step;if(T&&(T!==g||T==="s3_lock"))x(T,v.steps_completed??[],T==="s3_lock"?m:void 0,T==="s3_lock"?p:void 0),g=T;if(v.hasMore&&v.s3_lock_continuation_token!==void 0)f=v.s3_lock_continuation_token;else break}while(v.hasMore);if(b.length>0)v.step_results=bpe(b);return v}catch(v){if(_=v,k===5||!mmt(v)){if(v instanceof L&&b.length>0)v.stepResults=bpe(b);throw v}let T=v;if(o?.({attempt:k,maxAttempts:5,delayMs:d,step:T.step,error:T.message}),await new Promise((V)=>setTimeout(V,d)),y=!0,f!==void 0)h=!0}throw _}function bpe(e){let t=new Map;for(let n of e)t.set(n.step,n);return Array.from(t.values())}var Bi=z(()=>{$k();Z0();Ck();yo();ze()});function LS(e){if(e.service_access===void 0||e.service_access===null)return"unknown";return e.service_access?"upload":"browse"}async function vN(e,t,n,r,o={}){let s=new URLSearchParams;if(e)s.set("status",e);if(t)s.set("role",t);if(n)s.set("awaiting_approval","1");if(r)s.set("kind",r);if(o.search!==void 0)s.set("q",o.search);if(o.includeDeleted)s.set("include_deleted","true");let i=s.toString()?`?${s.toString()}`:"";return q(`/admin/users${i}`,{},!0,cZ)}async function qS(e,t=!1){return q(`/admin/users/by-id/${e}${t?"?include_deleted=true":""}`,{},!0,hZ)}async function Ppe(e,t){return q(`/admin/users/by-id/${e}`,{method:"PATCH",body:JSON.stringify(t)},!0,gZ)}async function Ipe(e){return q(`/admin/approve/${e}`,{method:"POST"},!0)}async function Npe(e){return q(`/admin/approve/by-id/${e}`,{method:"POST"},!0)}async function Fpe(e){return q(`/admin/revoke/${e}`,{method:"POST"},!0)}async function Mpe(e){return q(`/admin/revoke/by-id/${e}`,{method:"POST"},!0)}async function jpe(e){return q(`/admin/users/by-id/${e}/verify`,{method:"POST"},!0)}async function Lpe(e,t){return q(`/admin/users/${e}/role`,{method:"POST",body:JSON.stringify({role:t})},!0)}async function qpe(e,t){return q(`/admin/users/${e}/kind`,{method:"POST",body:JSON.stringify({kind:t})},!0)}async function BS(e){return q(`/admin/users/${encodeURIComponent(e)}`,{},!0)}async function Bpe(e,t){return q(`/admin/users/${e}/keys`,{method:"POST",body:JSON.stringify({name:t})},!0,mk)}async function Upe(e){return q(`/admin/users/${e}/keys`,{},!0,pk)}async function Hpe(e,t){return q(`/admin/users/${e}/keys/${t}`,{method:"DELETE"},!0)}async function kN(e,t){return q(`/admin/datasets/${e}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:t})},!0)}async function Vpe(e){return q(`/datasets/${e}/publish`,{method:"POST"},!0)}async function zpe(e){return q(`/admin/datasets/${e}/ci`,{},!0)}async function dl(e){return q(`/admin/datasets/${e}/ci`,{method:"POST"},!0)}async function EN(e){return q(`/admin/datasets/${e}/ci/validate`,{method:"POST"},!0)}async function SN(e){return q(`/admin/datasets/${e}/ci/sync`,{method:"POST"},!0)}async function Gpe(e,t){return q(`/admin/datasets/${e}/doi/concept`,{method:"POST",body:JSON.stringify(t)},!0)}async function Jb(e){return q(`/admin/datasets/${e}/doi`,{},!0)}async function $N(e,t){return q(`/admin/datasets/${e}/doi/update`,{method:"POST",body:JSON.stringify(t)},!0)}async function Wpe(e,t){return q(`/admin/datasets/${e}/withdraw`,{method:"POST",body:JSON.stringify({reason:t.reason,dry_run:t.dryRun})},!0)}async function Kpe(e,t){return q(`/admin/datasets/${e}/restore`,{method:"POST",body:JSON.stringify({dry_run:t.dryRun})},!0)}async function Jpe(e){return q(`/admin/datasets/${e}/reset`,{method:"POST"},!0)}async function Ype(e,t=!1){return q(`/admin/datasets/${e}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:t})},!0)}async function Xpe(e){return q("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function Qpe(e){return q("/admin/datasets/import",{method:"POST",body:JSON.stringify(e)},!0)}async function Zpe(e){return q("/admin/datasets/exemplar",{method:"POST",body:JSON.stringify(e)},!0)}async function eme(e){return q(`/admin/datasets/${e}/exemplar/remint-dois`,{method:"POST"},!0)}async function DN(e,t){let n=new URLSearchParams;if(e)n.set("status",e);if(t!==void 0)n.set("blocklisted",t?"1":"0");let r=n.toString();return q(`/admin/imports${r?`?${r}`:""}`,{},!0)}async function tme(e){return q(`/admin/imports/${e}/rollback`,{method:"POST"},!0)}async function nme(e){return q(`/admin/imports/${e}/retry`,{method:"POST"},!0)}async function RN(e){return q(`/admin/imports/${e}/verify`,{method:"POST"},!0)}async function rme(e){return q("/admin/imports/dispatch-cooldown",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function yg(e,t){return q(`/admin/datasets/${e}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(t??{})},!0)}async function ome(e,t){return q("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:e,...t??{}})},!0)}async function sme(e){let t=e?.limit??15;return q(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function ime(){return q("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function ame(e){let t=e?.limit??50;return q(`/admin/datasets/recording-stats-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function cme(){return q("/admin/datasets/recording-stats-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function lme(e){let t=e?.limit??15;return q(`/admin/datasets/signal-defaults-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function ume(){return q("/admin/datasets/signal-defaults-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function dme(e){let t=e?.limit??15,n=new URLSearchParams({limit:String(t)});if(e?.olderThan!=null)n.set("older-than",String(e.olderThan));if(e?.before!=null)n.set("before",e.before);return q(`/admin/datasets/data-integrity-sweep?${n.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function fme(){return q("/admin/datasets/data-integrity-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function pme(e,t){let n=t?.write?"":"?dry_run=1";return q(`/admin/datasets/${e}/availability-report${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function mme(e){let t=e?.limit??30,n=new URLSearchParams({limit:String(t)});if(e?.missingOnly)n.set("missing-only","1");return q(`/admin/datasets/availability-report-sweep?${n.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function hme(){return q("/admin/datasets/availability-report-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function gme(e){let t=new URLSearchParams;if(e?.prefix)t.set("prefix",e.prefix);if(e?.visibility)t.set("visibility",e.visibility);if(e?.limit)t.set("limit",String(e.limit));let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/fleet/drift${n}`,{},!0)}async function bg(e,t){return q(`/admin/datasets/${e}/enforce`,{method:"POST",body:JSON.stringify({dry_run:t})},!0)}async function yme(e){return q("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:e.prefix,visibility:e.visibility,limit:e.limit,dry_run:e.dryRun})},!0)}async function bme(e,t){return q(`/admin/datasets/${e}/review-ruleset`,{method:"POST",body:JSON.stringify({dry_run:t.dryRun,remove:t.remove})},!0)}async function wme(e){return q("/admin/datasets/review-ruleset/bulk",{method:"POST",body:JSON.stringify({prefix:e.prefix,after:e.after,limit:e.limit,dry_run:e.dryRun,remove:e.remove})},!0)}async function _me(e,t=!1){return q(`/admin/datasets/${e}/revalidate${t?"?force=true":""}`,{method:"POST"},!0)}async function xme(e){let t=e?`?user=${encodeURIComponent(e)}`:"";return q(`/admin/email-preferences${t}`,{},!0)}async function vme(e,t){let n=t?`?user=${encodeURIComponent(t)}`:"";return q(`/admin/email-preferences${n}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(e)},!0)}async function CN(e){return q("/admin/notify",{method:"POST",body:JSON.stringify(e)},!0)}async function kme(e){return q(`/admin/notify/${e}`,{},!0)}async function Eme(){return q("/admin/summary/coverage",{},!0)}async function Sme(e,t,n){return q("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:e,version:t,skip_canary:n?.skipCanary??!1})},!0)}async function AN(e){return q("/admin/doctor/scan",{method:"POST",body:JSON.stringify({...e?.check&&{check:e.check},...e?.datasetId&&{dataset_id:e.datasetId}})},!0)}async function ON(e){return q("/admin/doctor/fix",{method:"POST",body:JSON.stringify({check:e.check,...e.datasetId&&{dataset_id:e.datasetId},...e.dryRun&&{dry_run:!0}})},!0)}async function $me(){return q("/admin/zarr-catalog/publish",{method:"POST"},!0)}async function Dme(e){return q("/admin/neurobagel/regenerate",{method:"POST",body:JSON.stringify(e)},!0)}async function Rme(){return q("/admin/neurobagel/status",{method:"GET"},!0)}async function Cme(){return q("/admin/neurobagel/verify",{method:"POST",body:"{}"},!0)}async function Ame(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/datasets/zarr-fidelity-sweep${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Ome(e){let t=new URLSearchParams;if(e?.execute)t.set("execute","1");if(e?.limit!=null)t.set("limit",String(e.limit));if(e?.after)t.set("after",e.after);let n=t.toString()?`?${t.toString()}`:"";try{return await q(`/admin/datasets/upstream-backfill${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}catch(r){let o=r instanceof L&&r.statusCode===502?r.rawBody:void 0;if(o&&typeof o==="object"&&"execute"in o&&"counts"in o)return{...o,ok:!1};throw r}}async function Tme(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));if(e?.after)t.set("after",e.after);if(e?.dataset)t.set("dataset",e.dataset);let n=t.toString()?`?${t.toString()}`:"";try{return await q(`/admin/upstream-status${n}`,{method:"GET"},!0)}catch(r){let o=r instanceof L&&r.statusCode===502?r.rawBody:void 0;if(o&&typeof o==="object"&&"rows"in o&&"counts"in o)return{...o,ok:!1};throw r}}async function Pme(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));if(e?.apply)t.set("apply","1");let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/imports/issue-triage${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Ime(e){let t=e?.apply?"?apply=1":"";return q(`/admin/imports/coverage-sweep${t}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Nme(e){let t=e?.apply?"?apply=1":"";return q(`/admin/imports/weekly-summary${t}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Fme(e){return q("/admin/users/backfill-names",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({apply:e?.apply??!1,...e?.limit!=null?{limit:e.limit}:{}})},!0)}async function Mme(e){return q("/admin/users/backfill-usernames",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({apply:e?.apply??!1,...e?.limit!=null?{limit:e.limit}:{}})},!0)}async function jme(){return q("/admin/users/duplicates",{},!0,CZ)}async function Lme(e){return q(`/admin/users/${e}/clear-identity-conflict`,{method:"POST"},!0,AZ)}async function qme(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/datasets/anonymity-sweep${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Bme(){return q("/admin/datasets/anonymity-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Yb(e){let t=new URLSearchParams;if(e.verdicts&&e.verdicts.length>0)t.set("verdict",e.verdicts.join(","));if(e.dataset)t.set("dataset",e.dataset);if(e.author)t.set("author",e.author);if(e.needsMe)t.set("needs_me","1");let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/pr-reviews${n}`,{method:"GET"},!0)}async function wg(e,t,n){let r=n?`?head=${encodeURIComponent(n)}`:"";return q(`/admin/pr-reviews/${encodeURIComponent(e)}/${t}${r}`,{method:"GET"},!0)}async function TN(e,t,n={}){let r=n.redo?"?redo=1":"";return q(`/admin/pr-reviews/${encodeURIComponent(e)}/${t}/start${r}`,{method:"POST"},!0)}async function Ume(e){return q(`/admin/pr-review-authors/${encodeURIComponent(e)}`,{method:"GET"},!0)}async function Hme(e,t,n){return q(`/admin/pr-review-authors/${encodeURIComponent(e)}`,{method:"PUT",body:JSON.stringify(n?{mode:t,reason:n}:{mode:t})},!0)}async function Vme(e){return q(`/admin/pr-review-authors/${encodeURIComponent(e)}`,{method:"DELETE"},!0)}async function zme(e,t,n,r){return q(`/admin/pr-reviews/${encodeURIComponent(e)}/${t}/allow`,{method:"POST",body:JSON.stringify({reason:n,...r?{head_sha:r}:{}})},!0)}async function IN(e){let t=new URLSearchParams;for(let[r,o]of Object.entries(e))if(o!==void 0&&o!=="")t.set(r,String(o));let n=t.toString();return q(`/admin/mail/tickets${n?`?${n}`:""}`,{},!0)}async function NN(e){return q(`/admin/mail/tickets/${e}`,{},!0)}async function Gme(e,t,n){let r={text:t};return q(`/admin/mail/tickets/${e}/reply`,bd(r,{"Idempotency-Key":n}),!0)}async function Wme(e,t,n){let r={text:t};return q(`/admin/mail/tickets/${e}/note`,bd(r,{"Idempotency-Key":n}),!0)}async function Kme(e,t){let n={user_id:t};return q(`/admin/mail/tickets/${e}/assign`,bd(n),!0)}async function Jme(e,t){return q(`/admin/mail/tickets/${e}/status`,bd({status:t}),!0)}async function Yme(e,t){let n={summary:t};return q(`/admin/mail/tickets/${e}/summary`,PN(n),!0)}async function Xme(e,t){let n=t?{reason:t}:{};return q(`/admin/mail/tickets/${e}/escalate`,bd(n),!0)}async function Qme(e,t){return q(`/admin/mail/tickets/${e}/spam`,bd(t),!0)}async function Zme(e={}){let t=new URLSearchParams;for(let[r,o]of Object.entries(e))if(o!==void 0&&o!=="")t.set(r,String(o));let n=t.toString();return q(`/admin/mail/blocklist${n?`?${n}`:""}`,{},!0)}async function ehe(e){return q("/admin/mail/blocklist",bd(e),!0)}async function the(e){return q(`/admin/mail/blocklist/${e}`,{method:"DELETE"},!0)}async function nhe(){return q("/admin/mail/queues",{},!0)}async function rhe(e,t){return q(`/admin/mail/queues/${encodeURIComponent(e)}`,PN(t),!0)}async function ohe(e){return q(`/admin/mail/availability${e===void 0?"":`/${e}`}`,{},!0)}async function FN(e,t){return q(`/admin/mail/availability${t===void 0?"":`/${t}`}`,PN(e),!0)}async function she(e){return q("/admin/mail/reprocess",bd({raw_key:e}),!0)}async function ihe(e){return(await q(`/admin/users/by-id/${e}`,{},!0)).user.username}var bd=(e,t)=>({method:"POST",body:JSON.stringify(e),...t?{headers:t}:{}}),PN=(e)=>({method:"PUT",body:JSON.stringify(e)});var rc=z(()=>{Q0();ph();yo();ze()});async function Xr(e,t){return q(`/datasets/${e}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function MN(e,t){return q(`/datasets/${e}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function che(e){return q(`/admin/datasets/${e}/files`,{},!0)}async function lhe(e){let t,n=0,r=[],o=!0;while(o){let s=await q(`/admin/datasets/${e}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:t})},!0);if(n+=s.locked,s.failed?.length)r.push(...s.failed);if(o=s.hasMore,t=s.continuation_token,o&&!t)throw new L(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:n,failed:r}}async function uhe(e,t){let n=0,r=[],o=[];for(let s=0;s<t.length;s+=ahe){let i=t.slice(s,s+ahe),a=await q(`/admin/datasets/${e}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({objects:i})},!0);if(!Array.isArray(a.objects))throw new L(500,"The s3-lock route did not name the objects it locked.");if(n+=a.objects.length,o.push(...a.objects),a.failed?.length)r.push(...a.failed)}return{locked:n,failed:r,objects:o}}var ahe=100;var oc=z(()=>{yo();ze()});async function HS(e){return q(`/datasets/${e}/ci/status`,{},!0)}async function dhe(e){return q(`/datasets/${e}/manifest`,{},!0)}async function VS(e,t){return q(`/datasets/${e}/manifest/${t}`,{},!0)}function fhe(e){let t=e;if(!t.status)t.status="active";else if(!["active","archived","deleted"].includes(t.status))throw Error(`Invalid dataset status: ${t.status}`);if(!t.visibility)t.visibility="private";else if(!["public","private"].includes(t.visibility))throw Error(`Invalid dataset visibility: ${t.visibility}`);return t}async function wd(e={}){let t=new URLSearchParams;if(e.mine)t.set("mine","true");if(e.search)t.set("search",e.search);if(e.modality)t.set("modality",e.modality);if(e.author)t.set("author",e.author);if(e.task)t.set("task",e.task);if(e.license)t.set("license",e.license);if(e.hasDoi)t.set("has_doi","true");if(e.hasHed)t.set("has_hed","1");if(e.hasZarr)t.set("has_zarr","1");if(e.hasZarrVerified)t.set("has_zarr_verified","1");if(e.dataComplete)t.set("data_complete","1");if(e.recent)t.set("recent",String(e.recent));if(e.sort)t.set("sort",e.sort);if(e.limit!=null)t.set("limit",String(e.limit));if(e.offset!=null)t.set("offset",String(e.offset));if(e.owner)t.set("owner",e.owner);if(e.facets)for(let[o,s]of Object.entries(e.facets))t.set(o,s);if(e.includeUnknown)t.set("include_unknown","1");let n=t.toString()?`?${t.toString()}`:"",r=await q(`/datasets${n}`,{},e.mine?!0:"optional");return r.datasets=r.datasets.map(fhe),r}async function phe(e){return q(`/datasets/resolve/${e}`,{},"optional")}async function mhe(){return q("/datasets/facets",{signal:AbortSignal.timeout(5000)},"optional",uk)}async function hhe(e,t={}){let n=new URLSearchParams({q:e});if(t.modality)n.set("modality",t.modality);if(t.limit)n.set("limit",String(t.limit));if(t.hasHed)n.set("has_hed","1");if(t.hasZarr)n.set("has_zarr","1");if(t.hasZarrVerified)n.set("has_zarr_verified","1");if(t.author)n.set("author",t.author);if(t.task)n.set("task",t.task);if(t.license)n.set("license",t.license);if(t.hasDoi)n.set("has_doi","true");if(t.dataComplete)n.set("data_complete","1");if(t.recent)n.set("recent",String(t.recent));if(t.facets)for(let[o,s]of Object.entries(t.facets))n.set(o,s);if(t.includeUnknown)n.set("include_unknown","1");return await q(`/datasets/search?${n.toString()}`,{},"optional",vZ)}async function Xn(e){let t=await q(`/datasets/${e}`,{},"optional");return fhe(t.dataset)}async function Kf(e){return q(`/datasets/${e}/versions`,{},!0)}async function ghe(e){try{let t=await Kf(e);if(!Array.isArray(t.versions))throw Error(`GET /datasets/${e}/versions answered without a versions list`);return t.versions.length>0}catch(t){if(t instanceof L&&t.statusCode===404&&!Sk(t))return!1;throw t}}async function zS(e){return q("/datasets",{method:"POST",body:JSON.stringify(e)},!0)}async function yhe(e,t){return q(`/datasets/${e}/attestation`,{method:"PUT",body:JSON.stringify(t)},!0)}async function GS(e){return q(`/datasets/${e}/finalize`,{method:"POST"},!0)}async function jN(e){return q(`/datasets/${e}/request-access`,{method:"POST"},!0)}async function bhe(e,t){let n=t?`?status=${t}`:"";return q(`/datasets/${e}/access-requests${n}`,{},!0)}async function whe(e,t){return q(`/datasets/${e}/access-requests/${t}/approve`,{method:"POST"},!0)}async function _he(e,t){return q(`/datasets/${e}/access-requests/${t}/deny`,{method:"POST"},!0)}async function xhe(e,t){return q(`/datasets/${e}/invite`,{method:"POST",body:JSON.stringify({username:t})},!0)}async function vhe(e){return q(`/datasets/${e}/collaborators`,{},!0)}async function khe(e,t){return q(`/admin/datasets/${e}/enrichment`,{method:"POST",body:JSON.stringify(t)},!0)}var US;var sc=z(()=>{ph();yo();ze();US=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});function Khe(e,t){return e.filter((n)=>n.visibility==="public").map((n)=>n.dataset_id).filter((n)=>n.startsWith("nm")||n.startsWith("on")).filter((n)=>n!=="nm099999"&&!fl.has(n)).filter((n)=>t.prefix?n.startsWith(t.prefix):!0).sort()}var fl;var YS=z(()=>{fl=new Set(["nm000103","nm000104","nm000105","nm000106","nm000107"])});function Zr(e){return e.replace(Jhe,Yhe)}function Yhe(e){if(e===`
+`)}var gpe=!1;var fN=z(()=>{He()});function Ir(){if(process.env.TEST_API_URL)return process.env.TEST_API_URL;if(Vf)return pN;return zt().apiUrl||pN}async function q(e,t={},n=!1,r){let o=`${Ir()}${e}`,s={"Content-Type":"application/json","X-CLI-Version":Ds,...t.headers};if(n){let p=zt();if(!p.apiKey&&n===!0)throw new L(401,"Not authenticated. Run 'nemar auth login' first.");if(p.apiKey)s.Authorization=`Bearer ${p.apiKey}`}let i=t.method||"GET",a=typeof t.body==="string"?t.body:void 0,c=Date.now(),l;try{l=await fetch(o,{...t,headers:s})}catch(p){if(ul())TS({method:i,url:o,status:null,durationMs:Date.now()-c,requestHeaders:s,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new L(0,`Network error: Could not connect to ${Ir()}`,{originalError:p instanceof Error?p.message:String(p)})}let d;try{d=await l.text()}catch(p){if(ul())TS({method:i,url:o,status:l.status,durationMs:Date.now()-c,requestHeaders:s,requestBody:a,error:p instanceof Error?p.message:String(p)});throw new L(0,"Failed to read response body",{httpStatus:l.status,originalError:p instanceof Error?p.message:String(p)})}if(ul())TS({method:i,url:o,status:l.status,durationMs:Date.now()-c,requestHeaders:s,requestBody:a,responseBody:d});let f;try{f=JSON.parse(d)}catch{throw new L(l.status,`Invalid response from server (status ${l.status})`)}if(!l.ok){if(l.status===503&&(f.mode==="read-only"||f.mode==="full")){let V=typeof f.message==="string"?f.message:"NEMAR is in maintenance mode. Please retry shortly.",A=typeof f.eta==="string"?f.eta:null,F=new Cu(f.mode,V,A,f.details);throw IS(F),F}let p=typeof f.block_reason==="string",m=Array.isArray(f.missing)?f.missing.filter((V)=>typeof V==="string"):void 0,h=typeof f.error==="string"&&(dZ.includes(f.error)||RZ.includes(f.error)),g=typeof f.error==="string"&&(fk.options.includes(f.error)||PZ.includes(f.error)),y=typeof f.error==="string"&&sZ.includes(f.error),b=typeof f.error==="string"&&fZ.includes(f.error),_=typeof f.error==="string"&&SZ.includes(f.error),x=typeof f.error==="string"&&EZ.includes(f.error),k=typeof f.error==="string"&&$Z.includes(f.error),C=p||x||k||h||g||y||b||_||m!==void 0&&typeof f.error==="string"&&uZ.includes(f.error)?f.message||f.error:f.error||f.message;if(l.status===404&&f.error==="Not Found"&&typeof f.message==="string")C=`${f.message}. This NEMAR backend does not support this command yet.`;let T=new L(l.status,C||"Request failed",f.details,typeof f.step==="string"?f.step:void 0,p?f.block_reason:void 0,m);if(typeof f.error==="string")T.code=f.error;if(typeof f.reason==="string")T.reason=f.reason;throw T.rawBody=f,T}if(r){let p=r.safeParse(f);if(!p.success)throw new L(l.status,`Response for ${e} did not match the expected NEMAR contract`,{issues:p.error.issues});return p.data}return f}var pN="https://api.nemar.org",Vf;var yo=z(()=>{Q0();hk();LT();Z0();ah();xr();fn();fN();Hf();ze();Vf=pN.includes("workers.dev")});async function ug(e,t={}){return q(`/datasets/${e}/publish/request`,t.anonymous?{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({anonymous:!0})}:{method:"POST"},!0)}async function dg(e){return q(`/datasets/${e}/publish/status`,{},!0)}async function wpe(e){return q(`/datasets/${e}/publish/resend`,{method:"POST"},!0)}async function _pe(e){return q(`/datasets/${e}/publish/withdraw`,{method:"POST"},!0)}async function zf(e={}){let{statuses:t,search:n}=typeof e==="string"?{statuses:e?[e]:[]}:e,r=await ype(t,n),o=r;if(t!==void 0&&t.length>1&&r.requests.length===0){let s=[];for(let a of new Set(t))s.push(await ype([a],n));let i=s.flatMap((a)=>a.requests).sort(xpe);o={...r,requests:i,count:i.length}}return n?fmt(o,n):o}function xpe(e,t){return e.requested_at<t.requested_at?1:e.requested_at>t.requested_at?-1:0}async function ype(e,t){let n=new URLSearchParams;if(e&&e.length>0)n.set("status",e.join(","));if(t)n.set("search",t);let r=n.size>0?`?${n}`:"";return q(`/admin/publish/requests${r}`,{},!0)}function fmt(e,t){let n=e.requests.filter((s)=>oee(t,[s.dataset_id,s.requested_by_username,s.dataset_name])),r=(s)=>see(s.dataset_id,t)?0:1,o=[...n].sort((s,i)=>r(s)-r(i)||xpe(s,i));return{...e,requests:o,count:o.length}}async function fg(e,t,n){return q(`/admin/publish/${e}/deny`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({reason:t,...n!==void 0?{request_id:n}:{}})},!0)}async function NS(e){return q(`/admin/publish/${e}/identifier-screen`,{method:"POST"},!0)}async function FS(e){return q(`/admin/publish/${e}/review`,{},!0)}async function vpe(e){return q(`/admin/publish/${e}/review/start`,{method:"POST"},!0)}async function kpe(e,t){let n={message:t};return q(`/admin/publish/${e}/comment`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(n)},!0)}function pg(e){if(!(e instanceof L))return;let t=e.rawBody;if(typeof t!=="object"||t===null||Array.isArray(t))return;let n=t.code;return typeof n==="string"?n:void 0}function pmt(e,t=[]){if(e){let n=Da.indexOf(e);if(n>=0)return n+1}return Math.min(t.length+1,Da.length)}function mmt(e){if(!(e instanceof L))return!1;if(e.statusCode===0)return!0;if(e.statusCode===429)return!0;if(e.statusCode>=500&&e.statusCode<600)return!0;if(e.statusCode===403&&/repository has been locked/i.test(e.message))return!0;return!1}function hmt(){let e=process.env.NEMAR_APPROVE_RETRY_DELAY_MS;if(e===void 0||!/^\d+$/.test(e))return Dk;let t=Number(e);return Number.isSafeInteger(t)&&t<=Dk?t:Dk}async function mg(e,t=!1,n=!1,r=!1,o,s,i,a,c){let d=hmt(),f,p,m=0,h=!1,g,y=t,b=[],_;function x(k,v,C,T){if(!s)return;s({step:k,stepIndex:pmt(k,v),stepTotal:Da.length,s3LockLocked:C,s3LockTotal:T,s3LockResumed:k==="s3_lock"&&h?!0:void 0})}for(let k=1;k<=5;k++)try{let v,C=!0;do{if(v=await q(`/admin/publish/${e}/approve`,{method:"POST",headers:{"Content-Type":"application/json",...c?.dispatchToken?{[DZ]:c.dispatchToken}:{}},body:JSON.stringify({resume:C?y:!0,sandbox:n,s3_lock_continuation_token:f,s3_lock_total:p,skip_ci_check:r,...i!==void 0?{acknowledge_identifier_screen:i}:{},...a!==void 0?{[tee]:a}:{},...c?.requestId!==void 0?{request_id:c.requestId}:{}})},!0),C=!1,v.step_results)b.push(...v.step_results);if(v.s3_lock_total!==void 0)p=v.s3_lock_total;if(v.s3_lock_batch_count!==void 0)m+=v.s3_lock_batch_count;let T=v.step??v.step_results?.[v.step_results.length-1]?.step;if(T&&(T!==g||T==="s3_lock"))x(T,v.steps_completed??[],T==="s3_lock"?m:void 0,T==="s3_lock"?p:void 0),g=T;if(v.hasMore&&v.s3_lock_continuation_token!==void 0)f=v.s3_lock_continuation_token;else break}while(v.hasMore);if(b.length>0)v.step_results=bpe(b);return v}catch(v){if(_=v,k===5||!mmt(v)){if(v instanceof L&&b.length>0)v.stepResults=bpe(b);throw v}let T=v;if(o?.({attempt:k,maxAttempts:5,delayMs:d,step:T.step,error:T.message}),await new Promise((V)=>setTimeout(V,d)),y=!0,f!==void 0)h=!0}throw _}function bpe(e){let t=new Map;for(let n of e)t.set(n.step,n);return Array.from(t.values())}var Bi=z(()=>{$k();Z0();Ck();yo();ze()});function LS(e){if(e.service_access===void 0||e.service_access===null)return"unknown";return e.service_access?"upload":"browse"}async function vN(e,t,n,r,o={}){let s=new URLSearchParams;if(e)s.set("status",e);if(t)s.set("role",t);if(n)s.set("awaiting_approval","1");if(r)s.set("kind",r);if(o.search!==void 0)s.set("q",o.search);if(o.includeDeleted)s.set("include_deleted","true");let i=s.toString()?`?${s.toString()}`:"";return q(`/admin/users${i}`,{},!0,cZ)}async function qS(e,t=!1){return q(`/admin/users/by-id/${e}${t?"?include_deleted=true":""}`,{},!0,hZ)}async function Ppe(e,t){return q(`/admin/users/by-id/${e}`,{method:"PATCH",body:JSON.stringify(t)},!0,gZ)}async function Ipe(e){return q(`/admin/approve/${e}`,{method:"POST"},!0)}async function Npe(e){return q(`/admin/approve/by-id/${e}`,{method:"POST"},!0)}async function Fpe(e){return q(`/admin/revoke/${e}`,{method:"POST"},!0)}async function Mpe(e){return q(`/admin/revoke/by-id/${e}`,{method:"POST"},!0)}async function jpe(e){return q(`/admin/users/by-id/${e}/verify`,{method:"POST"},!0)}async function Lpe(e,t){return q(`/admin/users/${e}/role`,{method:"POST",body:JSON.stringify({role:t})},!0)}async function qpe(e,t){return q(`/admin/users/${e}/kind`,{method:"POST",body:JSON.stringify({kind:t})},!0)}async function BS(e){return q(`/admin/users/${encodeURIComponent(e)}`,{},!0)}async function Bpe(e,t){return q(`/admin/users/${e}/keys`,{method:"POST",body:JSON.stringify({name:t})},!0,mk)}async function Upe(e){return q(`/admin/users/${e}/keys`,{},!0,pk)}async function Hpe(e,t){return q(`/admin/users/${e}/keys/${t}`,{method:"DELETE"},!0)}async function kN(e,t){return q(`/admin/datasets/${e}/visibility`,{method:"PATCH",body:JSON.stringify({visibility:t})},!0)}async function Vpe(e){return q(`/datasets/${e}/publish`,{method:"POST"},!0)}async function zpe(e){return q(`/admin/datasets/${e}/ci`,{},!0)}async function dl(e){return q(`/admin/datasets/${e}/ci`,{method:"POST"},!0)}async function EN(e){return q(`/admin/datasets/${e}/ci/validate`,{method:"POST"},!0)}async function SN(e){return q(`/admin/datasets/${e}/ci/sync`,{method:"POST"},!0)}async function Gpe(e,t){return q(`/admin/datasets/${e}/doi/concept`,{method:"POST",body:JSON.stringify(t)},!0)}async function Jb(e){return q(`/admin/datasets/${e}/doi`,{},!0)}async function $N(e,t){return q(`/admin/datasets/${e}/doi/update`,{method:"POST",body:JSON.stringify(t)},!0)}async function Wpe(e,t){return q(`/admin/datasets/${e}/withdraw`,{method:"POST",body:JSON.stringify({reason:t.reason,dry_run:t.dryRun})},!0)}async function Kpe(e,t){return q(`/admin/datasets/${e}/restore`,{method:"POST",body:JSON.stringify({dry_run:t.dryRun})},!0)}async function Jpe(e){return q(`/admin/datasets/${e}/reset`,{method:"POST"},!0)}async function Ype(e,t=!1){return q(`/admin/datasets/${e}`,{method:"DELETE",headers:{"Content-Type":"application/json"},body:JSON.stringify({force:t})},!0)}async function Xpe(e){return q("/admin/datasets/bulk-delete",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function Qpe(e){return q("/admin/datasets/import",{method:"POST",body:JSON.stringify(e)},!0)}async function Zpe(e){return q("/admin/datasets/exemplar",{method:"POST",body:JSON.stringify(e)},!0)}async function eme(e){return q(`/admin/datasets/${e}/exemplar/remint-dois`,{method:"POST"},!0)}async function DN(e,t){let n=new URLSearchParams;if(e)n.set("status",e);if(t!==void 0)n.set("blocklisted",t?"1":"0");let r=n.toString();return q(`/admin/imports${r?`?${r}`:""}`,{},!0)}async function tme(e){return q(`/admin/imports/${e}/rollback`,{method:"POST"},!0)}async function nme(e){return q(`/admin/imports/${e}/retry`,{method:"POST"},!0)}async function RN(e){return q(`/admin/imports/${e}/verify`,{method:"POST"},!0)}async function rme(e){return q("/admin/imports/dispatch-cooldown",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({dataset_ids:e})},!0)}async function yg(e,t){return q(`/admin/datasets/${e}/reindex`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(t??{})},!0)}async function ome(e,t){return q("/admin/datasets/reindex/bulk",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({filter:e,...t??{}})},!0)}async function sme(e){let t=e?.limit??15;return q(`/admin/datasets/hed-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function ime(){return q("/admin/datasets/hed-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function ame(e){let t=e?.limit??50;return q(`/admin/datasets/recording-stats-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function cme(){return q("/admin/datasets/recording-stats-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function lme(e){let t=e?.limit??15;return q(`/admin/datasets/signal-defaults-sweep?limit=${encodeURIComponent(String(t))}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function ume(){return q("/admin/datasets/signal-defaults-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function dme(e){let t=e?.limit??15,n=new URLSearchParams({limit:String(t)});if(e?.olderThan!=null)n.set("older-than",String(e.olderThan));if(e?.before!=null)n.set("before",e.before);return q(`/admin/datasets/data-integrity-sweep?${n.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function fme(){return q("/admin/datasets/data-integrity-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function pme(e,t){let n=t?.write?"":"?dry_run=1";return q(`/admin/datasets/${e}/availability-report${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function mme(e){let t=e?.limit??30,n=new URLSearchParams({limit:String(t)});if(e?.missingOnly)n.set("missing-only","1");return q(`/admin/datasets/availability-report-sweep?${n.toString()}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function hme(){return q("/admin/datasets/availability-report-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function gme(e){let t=new URLSearchParams;if(e?.prefix)t.set("prefix",e.prefix);if(e?.visibility)t.set("visibility",e.visibility);if(e?.limit)t.set("limit",String(e.limit));let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/fleet/drift${n}`,{},!0)}async function bg(e,t){return q(`/admin/datasets/${e}/enforce`,{method:"POST",body:JSON.stringify({dry_run:t})},!0)}async function yme(e){return q("/admin/datasets/enforce/bulk",{method:"POST",body:JSON.stringify({prefix:e.prefix,visibility:e.visibility,limit:e.limit,dry_run:e.dryRun})},!0)}async function bme(e,t){return q(`/admin/datasets/${e}/review-ruleset`,{method:"POST",body:JSON.stringify({dry_run:t.dryRun,remove:t.remove})},!0)}async function wme(e){return q("/admin/datasets/review-ruleset/bulk",{method:"POST",body:JSON.stringify({prefix:e.prefix,after:e.after,limit:e.limit,dry_run:e.dryRun,remove:e.remove})},!0)}async function _me(e,t=!1){return q(`/admin/datasets/${e}/revalidate${t?"?force=true":""}`,{method:"POST"},!0)}async function xme(e){let t=e?`?user=${encodeURIComponent(e)}`:"";return q(`/admin/email-preferences${t}`,{},!0)}async function vme(e,t){let n=t?`?user=${encodeURIComponent(t)}`:"";return q(`/admin/email-preferences${n}`,{method:"PUT",headers:{"Content-Type":"application/json"},body:JSON.stringify(e)},!0)}async function CN(e){return q("/admin/notify",{method:"POST",body:JSON.stringify(e)},!0)}async function kme(e){return q(`/admin/notify/${e}`,{},!0)}async function Eme(){return q("/admin/summary/coverage",{},!0)}async function Sme(e,t,n){return q("/admin/manifest/dispatch",{method:"POST",body:JSON.stringify({dataset_id:e,version:t,skip_canary:n?.skipCanary??!1})},!0)}async function AN(e){return q("/admin/doctor/scan",{method:"POST",body:JSON.stringify({...e?.check&&{check:e.check},...e?.datasetId&&{dataset_id:e.datasetId}})},!0)}async function ON(e){return q("/admin/doctor/fix",{method:"POST",body:JSON.stringify({check:e.check,...e.datasetId&&{dataset_id:e.datasetId},...e.dryRun&&{dry_run:!0}})},!0)}async function $me(){return q("/admin/zarr-catalog/publish",{method:"POST"},!0)}async function Dme(e){return q("/admin/neurobagel/regenerate",{method:"POST",body:JSON.stringify(e)},!0)}async function Rme(){return q("/admin/neurobagel/status",{method:"GET"},!0)}async function Cme(){return q("/admin/neurobagel/verify",{method:"POST",body:"{}"},!0)}async function Ame(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/datasets/zarr-fidelity-sweep${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Ome(e){let t=new URLSearchParams;if(e?.execute)t.set("execute","1");if(e?.limit!=null)t.set("limit",String(e.limit));if(e?.after)t.set("after",e.after);let n=t.toString()?`?${t.toString()}`:"";try{return await q(`/admin/datasets/upstream-backfill${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}catch(r){let o=r instanceof L&&r.statusCode===502?r.rawBody:void 0;if(o&&typeof o==="object"&&"execute"in o&&"counts"in o)return{...o,ok:!1};throw r}}async function Tme(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));if(e?.after)t.set("after",e.after);if(e?.dataset)t.set("dataset",e.dataset);let n=t.toString()?`?${t.toString()}`:"";try{return await q(`/admin/upstream-status${n}`,{method:"GET"},!0)}catch(r){let o=r instanceof L&&r.statusCode===502?r.rawBody:void 0;if(o&&typeof o==="object"&&"rows"in o&&"counts"in o)return{...o,ok:!1};throw r}}async function Pme(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));if(e?.apply)t.set("apply","1");let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/imports/issue-triage${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Ime(e){let t=e?.apply?"?apply=1":"";return q(`/admin/imports/coverage-sweep${t}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Nme(e){let t=e?.apply?"?apply=1":"";return q(`/admin/imports/weekly-summary${t}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Fme(e){return q("/admin/users/backfill-names",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({apply:e?.apply??!1,...e?.limit!=null?{limit:e.limit}:{}})},!0)}async function Mme(e){return q("/admin/users/backfill-usernames",{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({apply:e?.apply??!1,...e?.limit!=null?{limit:e.limit}:{}})},!0)}async function jme(){return q("/admin/users/duplicates",{},!0,CZ)}async function Lme(e){return q(`/admin/users/${e}/clear-identity-conflict`,{method:"POST"},!0,AZ)}async function qme(e){let t=new URLSearchParams;if(e?.limit!=null)t.set("limit",String(e.limit));let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/datasets/anonymity-sweep${n}`,{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Bme(){return q("/admin/datasets/anonymity-sweep?reset=1",{method:"POST",headers:{"Content-Type":"application/json"}},!0)}async function Yb(e){let t=new URLSearchParams;if(e.verdicts&&e.verdicts.length>0)t.set("verdict",e.verdicts.join(","));if(e.dataset)t.set("dataset",e.dataset);if(e.author)t.set("author",e.author);if(e.needsMe)t.set("needs_me","1");let n=t.toString()?`?${t.toString()}`:"";return q(`/admin/pr-reviews${n}`,{method:"GET"},!0)}async function wg(e,t,n){let r=n?`?head=${encodeURIComponent(n)}`:"";return q(`/admin/pr-reviews/${encodeURIComponent(e)}/${t}${r}`,{method:"GET"},!0)}async function TN(e,t,n={}){let r=n.redo?"?redo=1":"";return q(`/admin/pr-reviews/${encodeURIComponent(e)}/${t}/start${r}`,{method:"POST"},!0)}async function Ume(e){return q(`/admin/pr-review-authors/${encodeURIComponent(e)}`,{method:"GET"},!0)}async function Hme(e,t,n){return q(`/admin/pr-review-authors/${encodeURIComponent(e)}`,{method:"PUT",body:JSON.stringify(n?{mode:t,reason:n}:{mode:t})},!0)}async function Vme(e){return q(`/admin/pr-review-authors/${encodeURIComponent(e)}`,{method:"DELETE"},!0)}async function zme(e,t,n,r){return q(`/admin/pr-reviews/${encodeURIComponent(e)}/${t}/allow`,{method:"POST",body:JSON.stringify({reason:n,...r?{head_sha:r}:{}})},!0)}async function IN(e){let t=new URLSearchParams;for(let[r,o]of Object.entries(e))if(o!==void 0&&o!=="")t.set(r,String(o));let n=t.toString();return q(`/admin/mail/tickets${n?`?${n}`:""}`,{},!0)}async function NN(e){return q(`/admin/mail/tickets/${e}`,{},!0)}async function Gme(e,t,n){let r={text:t};return q(`/admin/mail/tickets/${e}/reply`,bd(r,{"Idempotency-Key":n}),!0)}async function Wme(e,t,n){let r={text:t};return q(`/admin/mail/tickets/${e}/note`,bd(r,{"Idempotency-Key":n}),!0)}async function Kme(e,t){let n={user_id:t};return q(`/admin/mail/tickets/${e}/assign`,bd(n),!0)}async function Jme(e,t){return q(`/admin/mail/tickets/${e}/status`,bd({status:t}),!0)}async function Yme(e,t){let n={summary:t};return q(`/admin/mail/tickets/${e}/summary`,PN(n),!0)}async function Xme(e,t){let n=t?{reason:t}:{};return q(`/admin/mail/tickets/${e}/escalate`,bd(n),!0)}async function Qme(e,t){return q(`/admin/mail/tickets/${e}/spam`,bd(t),!0)}async function Zme(e={}){let t=new URLSearchParams;for(let[r,o]of Object.entries(e))if(o!==void 0&&o!=="")t.set(r,String(o));let n=t.toString();return q(`/admin/mail/blocklist${n?`?${n}`:""}`,{},!0)}async function ehe(e){return q("/admin/mail/blocklist",bd(e),!0)}async function the(e){return q(`/admin/mail/blocklist/${e}`,{method:"DELETE"},!0)}async function nhe(){return q("/admin/mail/queues",{},!0)}async function rhe(e,t){return q(`/admin/mail/queues/${encodeURIComponent(e)}`,PN(t),!0)}async function ohe(e){return q(`/admin/mail/availability${e===void 0?"":`/${e}`}`,{},!0)}async function FN(e,t){return q(`/admin/mail/availability${t===void 0?"":`/${t}`}`,PN(e),!0)}async function she(e){return q("/admin/mail/reprocess",bd({raw_key:e}),!0)}async function ihe(e){return(await q(`/admin/users/by-id/${e}`,{},!0)).user.username}var bd=(e,t)=>({method:"POST",body:JSON.stringify(e),...t?{headers:t}:{}}),PN=(e)=>({method:"PUT",body:JSON.stringify(e)});var rc=z(()=>{Q0();ph();yo();ze()});async function Xr(e,t){return q(`/datasets/${e}/upload-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function MN(e,t){return q(`/datasets/${e}/download-credentials`,{method:"POST",body:JSON.stringify({duration_seconds:t})},!0)}async function che(e){return q(`/admin/datasets/${e}/files`,{},!0)}async function lhe(e){let t,n=0,r=[],o=!0;while(o){let s=await q(`/admin/datasets/${e}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({continuation_token:t})},!0);if(n+=s.locked,s.failed?.length)r.push(...s.failed);if(o=s.hasMore,t=s.continuation_token,o&&!t)throw new L(500,"S3 lock paginated response missing continuation_token; aborting to avoid infinite loop")}return{locked:n,failed:r}}async function uhe(e,t){let n=0,r=[],o=[];for(let s=0;s<t.length;s+=ahe){let i=t.slice(s,s+ahe),a=await q(`/admin/datasets/${e}/s3-lock`,{method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify({objects:i})},!0);if(!Array.isArray(a.objects))throw new L(500,"The s3-lock route did not name the objects it locked.");if(n+=a.objects.length,o.push(...a.objects),a.failed?.length)r.push(...a.failed)}return{locked:n,failed:r,objects:o}}var ahe=100;var oc=z(()=>{yo();ze()});async function HS(e){return q(`/datasets/${e}/ci/status`,{},!0)}async function dhe(e){return q(`/datasets/${e}/manifest`,{},!0)}async function VS(e,t){return q(`/datasets/${e}/manifest/${t}`,{},!0)}function fhe(e){let t=e;if(!t.status)t.status="active";else if(!["active","archived","deleted"].includes(t.status))throw Error(`Invalid dataset status: ${t.status}`);if(!t.visibility)t.visibility="private";else if(!["public","private"].includes(t.visibility))throw Error(`Invalid dataset visibility: ${t.visibility}`);return t}async function wd(e={}){let t=new URLSearchParams;if(e.mine)t.set("mine","true");if(e.search)t.set("search",e.search);if(e.modality)t.set("modality",e.modality);if(e.author)t.set("author",e.author);if(e.task)t.set("task",e.task);if(e.license)t.set("license",e.license);if(e.hasDoi)t.set("has_doi","true");if(e.hasHed)t.set("has_hed","1");if(e.hasZarr)t.set("has_zarr","1");if(e.hasZarrVerified)t.set("has_zarr_verified","1");if(e.dataComplete)t.set("data_complete","1");if(e.recent)t.set("recent",String(e.recent));if(e.sort)t.set("sort",e.sort);if(e.limit!=null)t.set("limit",String(e.limit));if(e.offset!=null)t.set("offset",String(e.offset));if(e.owner)t.set("owner",e.owner);if(e.facets)for(let[o,s]of Object.entries(e.facets))t.set(o,s);if(e.includeUnknown)t.set("include_unknown","1");let n=t.toString()?`?${t.toString()}`:"",r=await q(`/datasets${n}`,{},e.mine?!0:"optional");return r.datasets=r.datasets.map(fhe),r}async function phe(e){return q(`/datasets/resolve/${e}`,{},"optional")}async function mhe(){return q("/datasets/facets",{signal:AbortSignal.timeout(5000)},"optional",uk)}async function hhe(e,t={}){let n=new URLSearchParams({q:e});if(t.modality)n.set("modality",t.modality);if(t.limit)n.set("limit",String(t.limit));if(t.hasHed)n.set("has_hed","1");if(t.hasZarr)n.set("has_zarr","1");if(t.hasZarrVerified)n.set("has_zarr_verified","1");if(t.author)n.set("author",t.author);if(t.task)n.set("task",t.task);if(t.license)n.set("license",t.license);if(t.hasDoi)n.set("has_doi","true");if(t.dataComplete)n.set("data_complete","1");if(t.recent)n.set("recent",String(t.recent));if(t.facets)for(let[o,s]of Object.entries(t.facets))n.set(o,s);if(t.includeUnknown)n.set("include_unknown","1");return await q(`/datasets/search?${n.toString()}`,{},"optional",vZ)}async function Xn(e){let t=await q(`/datasets/${e}`,{},"optional");return fhe(t.dataset)}async function Kf(e){return q(`/datasets/${e}/versions`,{},!0)}async function ghe(e){try{let t=await Kf(e);if(!Array.isArray(t.versions))throw Error(`GET /datasets/${e}/versions answered without a versions list`);return t.versions.length>0}catch(t){if(t instanceof L&&t.statusCode===404&&!Sk(t))return!1;throw t}}async function zS(e){return q("/datasets",{method:"POST",body:JSON.stringify(e)},!0)}async function yhe(e,t){return q(`/datasets/${e}/attestation`,{method:"PUT",body:JSON.stringify(t)},!0)}async function GS(e){return q(`/datasets/${e}/finalize`,{method:"POST"},!0)}async function jN(e){return q(`/datasets/${e}/request-access`,{method:"POST"},!0)}async function bhe(e,t){let n=t?`?status=${t}`:"";return q(`/datasets/${e}/access-requests${n}`,{},!0)}async function whe(e,t){return q(`/datasets/${e}/access-requests/${t}/approve`,{method:"POST"},!0)}async function _he(e,t){return q(`/datasets/${e}/access-requests/${t}/deny`,{method:"POST"},!0)}async function xhe(e,t){return q(`/datasets/${e}/invite`,{method:"POST",body:JSON.stringify({username:t})},!0)}async function vhe(e){return q(`/datasets/${e}/collaborators`,{},!0)}async function khe(e,t){return q(`/admin/datasets/${e}/enrichment`,{method:"POST",body:JSON.stringify(t)},!0)}var US;var sc=z(()=>{ph();yo();ze();US=/^\d{4}-\d{4}-\d{4}-\d{3}[\dX]$/});function Khe(e,t){return e.filter((n)=>n.visibility==="public").map((n)=>n.dataset_id).filter((n)=>n.startsWith("nm")||n.startsWith("on")).filter((n)=>n!=="nm099999"&&!fl.has(n)).filter((n)=>t.prefix?n.startsWith(t.prefix):!0).sort()}var fl;var YS=z(()=>{fl=new Set(["nm000103","nm000104","nm000105","nm000106","nm000107"])});function Zr(e){return e.replace(Jhe,Yhe)}function Yhe(e){if(e===`
 `)return"\\n";if(e==="\r")return"\\r";if(e==="\t")return"\\t";let t=e.codePointAt(0)??0;return t<=255?`\\x${t.toString(16).padStart(2,"0")}`:t<=65535?`\\u${t.toString(16).padStart(4,"0")}`:`\\u{${t.toString(16)}}`}function Xb(e){return e.replace(Jhe,(t)=>t===`
 `||t==="\t"?t:Yhe(t))}function XS(e,t=", "){return e.map(Zr).join(t)}var Jhe,ic=(e)=>Zr(e)===e;var Jf=z(()=>{Jhe=/[\p{Cc}\p{Cf}\u2028\u2029\u034f\u115f\u1160\u3164\uffa0\ufe00-\ufe0f\u{e0100}-\u{e01ef}]/gu});async function Rmt(){try{let{exitCode:e,stderr:t}=await R(["ssh","-T","-o","BatchMode=yes","-o","ConnectTimeout=5","git@github.com"]),n=t.includes("successfully authenticated");if(!n)console.warn("SSH test to github.com failed:",{exitCode:e,stderr:t.trim().slice(0,500)});return{works:n,error:n?void 0:t.trim().slice(0,500)}}catch(e){let t=e instanceof Error?e.message:String(e);return console.warn("SSH test exception:",t),{works:!1,error:t}}}async function Yf(){try{let{stdout:e,exitCode:t,stderr:n}=await R(["gh","auth","token"],{sensitiveOutput:!0});if(t!==0)return console.warn("gh CLI returned non-zero exit code:",t),console.warn("stderr:",n),{token:null,error:`gh auth token failed: ${n.trim()||"unknown error"}`};if(!e.trim())return console.warn("gh auth token returned empty output"),{token:null,error:"gh CLI returned empty token"};return{token:e.trim()}}catch(e){let t=e instanceof Error?e.message:String(e);if(console.error("Failed to get GitHub token from gh CLI:",t),t.includes("ENOENT")||t.includes("not found"))return{token:null,error:"gh CLI not installed (command not found)"};return{token:null,error:`gh CLI error: ${t}`}}}async function QS(e){try{let{stdout:t,exitCode:n,stderr:r}=await R(["gh","api","user","--jq",".login"]);if(n!==0){if(r.includes("not logged in")||r.includes("auth login"))return{authenticated:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};return{authenticated:!1,error:`gh CLI error: ${r.trim()||"unknown error"}`}}let o=t.trim();if(!o)return{authenticated:!1,error:"gh CLI returned empty username"};if(e){let s=o.toLowerCase()===e.toLowerCase();return{authenticated:!0,username:o,matches:s,error:s?void 0:`gh CLI authenticated as '${o}', expected '${e}'`}}return{authenticated:!0,username:o}}catch(t){let n=t instanceof Error?t.message:String(t);if(n.includes("ENOENT")||n.includes("not found"))return{authenticated:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{authenticated:!1,error:`Failed to verify gh CLI: ${n}`}}}async function ZS(e){if(!/^[a-zA-Z0-9_.-]+\/[a-zA-Z0-9_.-]+$/.test(e))return{accepted:!1,error:`Invalid repository format: ${e}`};let{stdout:t,exitCode:n,stderr:r}=await R(["gh","api","/user/repository_invitations"]);if(n!==0){if(r.includes("not logged in")||r.includes("auth login"))return{accepted:!1,error:"gh CLI not authenticated. Run 'gh auth login' to authenticate."};if(r.includes("API rate limit")||r.includes("403"))return{accepted:!1,error:"GitHub API rate limit exceeded. Please try again in a few minutes."};if(r.includes("ENOENT")||r.includes("not found"))return{accepted:!1,error:"gh CLI not installed. Install from https://cli.github.com/"};return{accepted:!1,error:`Failed to list invitations: ${r.trim()||"unknown error"}`}}let o=null;try{o=JSON.parse(t||"[]").find((l)=>l.repository.full_name===e)?.id??null}catch(a){let c=a instanceof Error?a.message:String(a);return console.error("Failed to parse GitHub invitations response:",c),console.error("  Raw response (first 500 chars):",(t||"").slice(0,500)),{accepted:!1,error:`Failed to parse GitHub API response: ${c}`}}if(!o){let{exitCode:a}=await R(["gh","api",`/repos/${e}`,"--silent"]);if(a===0)return{accepted:!0,alreadyCollaborator:!0};return{accepted:!1,error:`No pending invitation found for ${e}. You may need to accept it manually via GitHub.`}}let{exitCode:s,stderr:i}=await R(["gh","api","--method","PATCH",`/user/repository_invitations/${o}`]);if(s!==0)return{accepted:!1,error:`Failed to accept invitation: ${i.trim()||"unknown error"}`};return{accepted:!0}}async function ac(e,t,n="origin"){let r=t;if(process.env.GH_TOKEN&&t.startsWith("git@github.com:")){let o=process.env.GH_TOKEN.trim();if(!o||/\s/.test(o))return{success:!1,error:"GH_TOKEN environment variable is set but appears malformed (empty or contains whitespace)"};r=`https://github.com/${t.replace("git@github.com:","")}`,await R(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${o}'`],{cwd:e,redact:[o]})}else if(t.startsWith("git@github.com:")){let o=t.replace("git@github.com:",""),s=await Yf();if(s.token)r=`https://github.com/${o}`,await R(["git","config","credential.https://github.com.helper",`!printf 'username=x-access-token\\npassword=${s.token}'`],{cwd:e,redact:[s.token]});else{let i=await Rmt();if(i.works)r=t;else return{success:!1,error:`GitHub authentication not configured.
@@ -420,7 +420,7 @@ ${b.message}`,r);if(_)return Wt("message",`The squash message would not carry th
 `);let{phase:f,code:p}=d;e(`${f_("result",p===void 0?{phase:f}:{phase:f,code:p})}
 `);return}e(`${f_("result",{phase:"failed",code:"runner-failed"})}
 `)};FR={emit(d,f){if(d==="result")o=String(f?.phase??"failed");e(`${f_(d,f)}
-`)},drop(){t++},dropped:()=>t,stored(d,f){s={phase:d,code:d==="refused"||d==="failed"?f:void 0}},time(d,f){i.set(d,f)},quietFields:a},process.on("exit",()=>{if(o===null)c()});let l=()=>{try{t++;let d=o;if(s?d!==s.phase:d===null||d==="planned"||d==="opened"||d==="finished")c()}finally{process.exit(1)}};return process.on("uncaughtException",l),process.on("unhandledRejection",l),FR}function kj(e){return e.some((t)=>t===pEe||t.startsWith(`${pEe}=`))}function vDt(e){let t=e.GITHUB_RUN_ID??"";if(e.GITHUB_SERVER_URL==="https://github.com"&&e.GITHUB_REPOSITORY==="nemarDatasets/.github"&&/^[0-9]{1,20}$/.test(t))return`https://github.com/nemarDatasets/.github/actions/runs/${t}`;return null}function yEe(e,t,n){let r=vj(e);if(r===null)throw br("id on the command line");let o=bDt(t);if(o.dispatchId!==r)throw new I("dispatch-mismatch","The dispatch named on the command line is not the one the event delivered.");let s=t.RUNNER_TEMP;return{dispatch:o,runUrl:vDt(t),marker:s?Kd(s,"repull-reported"):null,sink:n}}var kDt="https://nemar-api-dev.sccn-org.workers.dev";function bEe(e){let t;try{t=new URL(e)}catch{return!1}if(t.username||t.password||t.search||t.hash||t.pathname!=="/"&&t.pathname!=="")return!1;if(t.protocol==="https:")return t.host===new URL(kDt).host;return t.protocol==="http:"&&["127.0.0.1","localhost","[::1]"].includes(t.hostname)}function Ej(e,t){if(!t.some((n)=>n.includes(e.token)))return null;return new I("auto-token-on-argv","The dispatch token is on the command line, where the public log shows it.")}function wEe(e,t){let n=Ej(e,t.argv);if(n)return n;let r=t.ownVersion??Ds;if((t.devBuild??Vf)||!Pg.test(r)||r!==e.cliVersion)return new I("auto-cli-version","This CLI is not the release the dispatch names: an automatic run uses only that release.");if(t.verbose??(ig()||ul()||t.argv.includes("--verbose")||t.argv.includes("--debug")))return new I("auto-verbose","Verbose or debug output is on, and it prints what the run reads; an automatic run takes neither.");if(e.mode!==t.mode||e.datasetId!==t.datasetId)return new I("dispatch-mismatch","The command is not the one the dispatch asks for: another kind of run, or another dataset.");if(!t.env.GH_TOKEN?.trim())return new I("auto-no-app-token","GH_TOKEN is not set: an automatic run pushes and opens its pull request with the App token minted for this dataset.");if(jR(t.env,t.nowMs??Date.now())===null)return new I("auto-token-clock",`${_Ee} does not say when the App token was minted, so the run cannot keep its pushes inside the token's hour.`);return null}var _Ee="NEMAR_REPULL_TOKEN_SINCE";function jR(e,t){let n=e[_Ee]?.trim()??"";if(!/^[1-9][0-9]{0,11}$/.test(n))return null;let r=Number(n);return r*1000<=t+300000?r:null}function EDt(e,t){return(e+gw)*1000-t}function p_(e,t,n){let r=(n+dbe+KF)*1000;if(EDt(e,t)>=r)return null;return new I("auto-token-hour","What is left to do would pass the App token's usable hour, so the run stops before this step; the record, if there is one, stays where it stopped.")}function m_(e){let t=Rc(e);return YF({bytes:t.copy_bytes??0,objects:t.copy_items??0})}function yy(e,t){return new I("auto-option",t==="required"?`An automatic run needs ${e}.`:`An automatic run does not take ${e}.`)}function xEe(e){if(!e.executable)throw new I("not-executable","The plan is not executable.");LR(e.body)}function LR(e){let t=Rc(e),n=lbe(e.planner,t);if(n)throw new I(n.code,n.message);if(t.copy_bytes_unknown!==0)throw new I("auto-copy-too-large","An automatic re-pull takes only a plan whose copy size is known for every key.");let{copy_bytes:r,copy_items:o,local_bytes:s,local_uploads:i}=t,a=SDt();if(r===void 0||o===void 0||s===void 0||i===void 0||t.local_bytes_unknown!==0||YF({bytes:r+s,objects:o+i})>a)throw new I("auto-copy-too-long",`An automatic re-pull takes only a plan whose copy, by its known size and count, fits ${Math.floor(a/60)} minutes: the App token that pushes it lasts an hour.`)}function qR(e){return`${e}.planner`}function vEe(e,t,n,r){lDt(Kd(t,"computed"),{mode:448});for(let[s,i]of n)xj(Kd(t,"computed",s),i,{mode:384});xj(Kd(t,"digest"),`${r}
+`)},drop(){t++},dropped:()=>t,stored(d,f){s={phase:d,code:d==="refused"||d==="failed"?f:void 0}},time(d,f){i.set(d,f)},quietFields:a},process.on("exit",()=>{if(o===null)c()});let l=()=>{try{t++;let d=o;if(s?d!==s.phase:d===null||d==="planned"||d==="opened"||d==="finished")c()}finally{process.exit(1)}};return process.on("uncaughtException",l),process.on("unhandledRejection",l),FR}function kj(e){return e.some((t)=>t===pEe||t.startsWith(`${pEe}=`))}function vDt(e){let t=e.GITHUB_RUN_ID??"";if(e.GITHUB_SERVER_URL==="https://github.com"&&e.GITHUB_REPOSITORY==="nemarDatasets/.github"&&/^[0-9]{1,20}$/.test(t))return`https://github.com/nemarDatasets/.github/actions/runs/${t}`;return null}function yEe(e,t,n){let r=vj(e);if(r===null)throw br("id on the command line");let o=bDt(t);if(o.dispatchId!==r)throw new I("dispatch-mismatch","The dispatch named on the command line is not the one the event delivered.");let s=t.RUNNER_TEMP;return{dispatch:o,runUrl:vDt(t),marker:s?Kd(s,"repull-reported"):null,sink:n}}var kDt="https://api.nemar.org";function bEe(e){let t;try{t=new URL(e)}catch{return!1}if(t.username||t.password||t.search||t.hash||t.pathname!=="/"&&t.pathname!=="")return!1;if(t.protocol==="https:")return t.host===new URL(kDt).host;return t.protocol==="http:"&&["127.0.0.1","localhost","[::1]"].includes(t.hostname)}function Ej(e,t){if(!t.some((n)=>n.includes(e.token)))return null;return new I("auto-token-on-argv","The dispatch token is on the command line, where the public log shows it.")}function wEe(e,t){let n=Ej(e,t.argv);if(n)return n;let r=t.ownVersion??Ds;if((t.devBuild??Vf)||!Pg.test(r)||r!==e.cliVersion)return new I("auto-cli-version","This CLI is not the release the dispatch names: an automatic run uses only that release.");if(t.verbose??(ig()||ul()||t.argv.includes("--verbose")||t.argv.includes("--debug")))return new I("auto-verbose","Verbose or debug output is on, and it prints what the run reads; an automatic run takes neither.");if(e.mode!==t.mode||e.datasetId!==t.datasetId)return new I("dispatch-mismatch","The command is not the one the dispatch asks for: another kind of run, or another dataset.");if(!t.env.GH_TOKEN?.trim())return new I("auto-no-app-token","GH_TOKEN is not set: an automatic run pushes and opens its pull request with the App token minted for this dataset.");if(jR(t.env,t.nowMs??Date.now())===null)return new I("auto-token-clock",`${_Ee} does not say when the App token was minted, so the run cannot keep its pushes inside the token's hour.`);return null}var _Ee="NEMAR_REPULL_TOKEN_SINCE";function jR(e,t){let n=e[_Ee]?.trim()??"";if(!/^[1-9][0-9]{0,11}$/.test(n))return null;let r=Number(n);return r*1000<=t+300000?r:null}function EDt(e,t){return(e+gw)*1000-t}function p_(e,t,n){let r=(n+dbe+KF)*1000;if(EDt(e,t)>=r)return null;return new I("auto-token-hour","What is left to do would pass the App token's usable hour, so the run stops before this step; the record, if there is one, stays where it stopped.")}function m_(e){let t=Rc(e);return YF({bytes:t.copy_bytes??0,objects:t.copy_items??0})}function yy(e,t){return new I("auto-option",t==="required"?`An automatic run needs ${e}.`:`An automatic run does not take ${e}.`)}function xEe(e){if(!e.executable)throw new I("not-executable","The plan is not executable.");LR(e.body)}function LR(e){let t=Rc(e),n=lbe(e.planner,t);if(n)throw new I(n.code,n.message);if(t.copy_bytes_unknown!==0)throw new I("auto-copy-too-large","An automatic re-pull takes only a plan whose copy size is known for every key.");let{copy_bytes:r,copy_items:o,local_bytes:s,local_uploads:i}=t,a=SDt();if(r===void 0||o===void 0||s===void 0||i===void 0||t.local_bytes_unknown!==0||YF({bytes:r+s,objects:o+i})>a)throw new I("auto-copy-too-long",`An automatic re-pull takes only a plan whose copy, by its known size and count, fits ${Math.floor(a/60)} minutes: the App token that pushes it lasts an hour.`)}function qR(e){return`${e}.planner`}function vEe(e,t,n,r){lDt(Kd(t,"computed"),{mode:448});for(let[s,i]of n)xj(Kd(t,"computed",s),i,{mode:384});xj(Kd(t,"digest"),`${r}
 `,{mode:384});let o=qR(e);fDt(o,{recursive:!0,force:!0}),dDt(t,o)}function kEe(e,t){let n=qR(e),r=Kd(n,"computed"),o=Kd(n,"digest");if(!wj(Kd(n,"upstream.git"))||!wj(r)||!wj(o)||_j(o,"utf8").trim()!==t)throw new I("not-planned","No handoff of this plan's own plan step is beside the plan file; an automatic execute plans nothing itself.");let s=new Map;for(let i of uDt(r))s.set(i,_j(Kd(r,i)));return{workdir:n,computed:s}}function SDt(e=process.env){let t=e.NEMAR_REPULL_COPY_BUDGET_SECONDS?.trim()??"",n=/^\d{1,9}$/.test(t)?Number(t):Number.NaN;return Number.isFinite(n)&&n<JF?n:JF}async function EEe(e,t,n=fetch){let r=t.GH_TOKEN?.trim();if(!r)return!1;let o;try{o=bn(t)}catch{return!1}try{let s=await n(`${o}/repos/nemarDatasets/${e}`,{redirect:"error",headers:{Authorization:`Bearer ${r}`,Accept:"application/vnd.github+json","User-Agent":"nemar-cli"},signal:AbortSignal.timeout(1e4)});return await s.body?.cancel().catch(()=>{return}),s.status===401}catch{return!1}}function BR(e,t){if(WF(e))return e;if(t===void 0)return"no-code";if(t==="prepare"&&kxe.includes(e??""))return"scrub-failed";return cbe[t]}var $Dt=15000,hEe=["opened","finished","refused","failed"];async function Sj(e,t,n={},r={}){let o={dispatch_id:e.dispatch.dispatchId,dataset_id:e.dispatch.datasetId,phase:t};if(t==="refused"||t==="failed")o.code=BR(n.code);if(t==="opened")o.repull_id=n.repullId;if(e.runUrl)o.workflow_run_url=e.runUrl;let s=r.fetchImpl??fetch,i=r.apiUrl??Ir(),a=Math.max(1,r.attempts??3),c={stored:!1,code:"report-unanswered"};for(let l=1;l<=a;l++){let d,f;try{let p=await s(`${i}/webhooks/repull-state`,{method:"POST",redirect:"error",headers:{"Content-Type":"application/json","X-Repull-Token":e.dispatch.token},body:JSON.stringify(o),signal:AbortSignal.timeout(r.timeoutMs??$Dt)});d=p.status,f=(await p.json().catch(()=>null))?.code}catch{if(c={stored:!1,code:"report-unanswered"},l<a)await gEe(r.backoffMs??2000);continue}if(d===200){c={stored:!0};break}if(c={stored:!1,code:typeof f==="string"&&WF(f)?f:"report-unanswered"},d<500)break;if(l<a)await gEe(r.backoffMs??2000)}if(e.sink.emit("report",{phase:t,answer:c.stored?"stored":c.code}),c.stored&&hEe.includes(t))e.sink.stored(t,o.code);if(c.stored&&hEe.includes(t)&&e.marker)try{xj(e.marker,`${t}
 `,{mode:384})}catch{}return c}var gEe=(e)=>new Promise((t)=>setTimeout(t,e));Fi();no();yo();ze();import{existsSync as R1t,readdirSync as C1t,rmdirSync as A1t}from"fs";import{dirname as v_,join as x_}from"path";xr();mc();jr();qd();Xi();t1();Lg();no();ze();import{dirname as VRt,join as zRt}from"path";xr();function Wo(e,t){return new I(e,t)}var Uj=["registered","pr_open","gates_clear"];async function oSe(e,t,n){let r=await ly({token:e.token,base:e.base,datasetId:e.datasetId,state:"all",head:t});if(!r.ok)throw Wo("github-unreadable",`GitHub's pull requests of ${t} could not be read whole (${cy(r)}), so whether one merged is not known; nothing was closed.`);let o=new Set(r.pulls.filter((i)=>i.headRef===t).map((i)=>i.number));if(n!==null)o.add(n);let s=[];for(let i of[...o].sort((a,c)=>a-c)){let a=await Cs(e.token,e.datasetId,i,e.base);if(!a.ok)throw Wo("github-unreadable",`Pull request #${i} could not be read on GitHub (${a.reason}); nothing was closed.`);s.push({number:i,state:a.value.state,headSha:a.value.headSha})}return s}function GRt(e,t,n,r){return Wo("foreign-pull-request-merged",`GitHub says pull request #${t} of ${n} merged, and it is not this re-pull's (it recorded #${r}): that version was released outside the re-pull, which resume does not record. Nothing was closed or ended; read the dataset's history on GitHub (nemarDatasets/${e.datasetId}) to see what merged before this record is ended.`)}function sSe(e,t,n,r){return r!==null&&t!==r?GRt(e,t,n,r):iSe(e,t)}function iSe(e,t,n=!1){return(n?ot:Wo)("pull-request-merged",`GitHub says pull request #${t} merged, so this re-pull is not ended: nemar admin repull resume ${e.datasetId} records the merge (a merge minted a DOI, and its release is recorded, not abandoned).`)}async function WRt(e,t){let n=(await js(e,t)).filter((a)=>a.mode==="120000"||a.mode==="100644"||a.mode==="100755"),r=new Map;if(n.length>0){let a=await ee(e,["cat-file","--batch-check"],{stdin:`${n.map((c)=>c.oid).join(`
 `)}
@@ -2011,7 +2011,7 @@ Examples:
 `)}}}Z0();ze();function I1e(e){return e instanceof L&&e.statusCode===422&&e.rawBody?.status==="blocked"&&dk(e.blockReason)}function N1e(e){let t=e.rawBody?.ci_url;return typeof t==="string"&&/^https:\/\/\S+$/.test(t)?t:void 0}function $q(e){return e==="bids_validation_in_progress"?"Request recorded: BIDS validation is still running.":"Request recorded: BIDS validation has not started yet."}function Dq(e,t=!1){let n=`nemar dataset publish request ${e}${t?" --anonymous":""}`;return["  Your request is recorded. NEMAR re-checks it automatically and continues once validation passes.",`  If you would rather not wait for that, check validation with: nemar dataset ci ${e}`,`  Once it has passed, request again: ${n}`,"  If it says a request already exists, nothing more is needed.","  If validation fails or a submission minimum fails, the request stays blocked and nothing is emailed:",`  check nemar dataset ci ${e} or nemar dataset publish status ${e}.`]}ze();xr();async function cC(){let e=zt().sandboxCompleted;if(e!==void 0)return{status:e?"completed":"not_completed"};try{let t=await WS();if(Tn("sandboxCompleted",t.sandbox_completed),t.sandbox_dataset_id)Tn("sandboxDatasetId",t.sandbox_dataset_id);return t.sandbox_completed?{status:"completed"}:{status:"not_completed"}}catch(t){return{status:"unknown",reason:G(t)}}}He();di();Z6();He();uo();rc();ze();bp();CD();Jf();di();Ui();PD();nM();jd();wp();import{existsSync as Rq,mkdirSync as LPt,readFileSync as qPt,statSync as BPt,writeFileSync as F1e}from"fs";import{join as UPt,resolve as Cq}from"path";function M1e(e,t,n){if(!Ji(n,"metadata_write")){if(t)try{let r=Cq(e,".nemar"),o=Cq(r,"metadata.json");if(!Rq(o)){if(!Rq(r))LPt(r,{recursive:!0});F1e(o,JSON.stringify(t,null,2))}let s=Cq(e,".bidsignore"),i="";if(Rq(s))i=qPt(s,"utf-8");if(!i.includes(".nemar/")){let a=i?`${i.trimEnd()}
 .nemar/
 `:`.nemar/
-`;F1e(s,a)}console.log(u.dim("  Updated .bidsignore for NEMAR metadata"))}catch(r){console.log(u.yellow(`  Warning: Could not update .bidsignore: ${G(r)}`)),console.log(u.dim("  Upload will continue without author enrichment."))}vl(n,"metadata_write"),qr(e,n)}else console.log(u.dim("  Metadata write already completed (skipping)"))}var j1e=1073741824;function HPt(e,t,n=j1e){let r=[],o=0;for(let s of t){let i=e.files[s];if(!i||i.mtimeMs===void 0)continue;r.push({path:s,size:i.size,mtimeMs:i.mtimeMs}),o+=i.size}return o>=n?r:null}function VPt(e,t){return t.filter((n)=>{try{return Fo(n.path,BPt(UPt(e,n.path)).size)}catch{return!0}})}function zPt(e){let t=0;for(let n of Object.values(e.files))t+=n.size;return t}function GPt(e){return["Warning: saving dataset changes has produced no stdout or stderr for",`${ID(e)}. git add -A is still running.`,"Wait, or interrupt and rerun the upload; the save step will run again."].join(" ")}async function L1e(e,t,n,r={}){if(!Ji(n,"dataset_save")){let o=D({text:"Saving dataset changes...",...r.spinnerStream?{stream:r.spinnerStream}:{}}).start(),s=r.skipMinBytes??j1e,i=[];if(zPt(n)>=s){let c=r.annexedPaths??null;if(c===null)try{c=await Md(e)}catch(l){console.log(u.dim(`  Could not list annexed files (${G(l)}); staging will re-read them`))}if(c!==null)i=VPt(e,HPt(n,c,s)??[])}let a=await pl(e,"Initial NEMAR dataset upload",t,{skipContentCheck:i,onInactivityWarning:(c)=>{o=Fw(o,GPt(c))},...r.inactivityWarningAfterMs===void 0?{}:{inactivityWarningAfterMs:r.inactivityWarningAfterMs}});if(!a.success)return qr(e,n),_o(o,"Failed to save dataset",a.error),console.log(),console.log(u.yellow("Re-run the same command to resume from this step.")),Ne;if(r.verifyRemote){let c;try{c=await lM(e,r.verifyRemote)}catch(l){return qr(e,n),_o(o,"Could not confirm the saved files are at the S3 remote",l),console.log(),console.log(u.yellow("Re-run the same command to resume from this step.")),Ne}if(c.length>0){kl(n,"s3_upload"),qr(e,n);let l=XS(c.slice(0,5)),d=c.length>5?` (and ${c.length-5} more)`:"";return _o(o,"Saved files are not at the S3 remote",`${c.length} annexed file(s) in the commit are not recorded at the remote: ${l}${d}. The save itself annexed them, after the upload step had run.`),console.log(),console.log(u.yellow("Re-run the same command: it uploads them and saves again.")),Ne}}o.succeed("Dataset changes saved"),vl(n,"dataset_save"),qr(e,n)}else console.log(u.dim("  Dataset save already completed (skipping)"));return mn()}async function q1e(e,t){if(!Ji(t,"github_push")){let n=D("Pushing metadata to GitHub...").start(),r=await ur(e);if(!r.success)return qr(e,t),_o(n,"Failed to push to GitHub",r.error),console.log(),console.log(u.yellow("Re-run the same command to resume from this step.")),Ne;if(r.warning)n.warn("Metadata pushed to GitHub (with warning)"),console.log(u.yellow(`  ${r.warning}`));else n.succeed("Metadata pushed to GitHub");vl(t,"github_push"),qr(e,t)}else console.log(u.dim("  GitHub push already completed (skipping)"));return mn()}async function B1e(e,t,n){if(!Ji(n,"ci_deploy")){let r=D("Setting up BIDS validation CI...").start(),o="configured";try{await dl(t),r.succeed("BIDS validation CI configured")}catch(s){if(o="not-configured",s instanceof L&&s.statusCode===403)r.info("CI workflow will be configured by an admin");else{let i=s instanceof Error?s.message:String(s);r.warn(`Could not configure CI: ${i}`),console.log(u.dim(`  An admin can add it later with: nemar admin ci add ${t}`))}}return vl(n,"ci_deploy"),qr(e,n),o}return console.log(u.dim("  CI deploy already completed (skipping)")),"unknown"}function WPt(e,t){let n=e.startsWith("xx");if(t==="not-configured"){if(n)return;console.log("BIDS validation is not set up yet."),console.log(`  CI is set up when you request publication: ${u.cyan(`nemar dataset publish request ${e}`)}`),console.log();return}if(console.log("BIDS validation runs on GitHub after the upload."),console.log(`  Check it with: ${u.cyan(`nemar dataset ci ${e}`)}`),!n)console.log(`  Once it has passed, request publication: ${u.cyan(`nemar dataset publish request ${e}`)}`);console.log()}function U1e(e,t,n="unknown"){Nw(e),R_e(e),console.log(),console.log(u.green.bold("Upload complete!")),console.log(),console.log(`  Dataset ID: ${u.cyan(t.dataset_id)}`),console.log(`  GitHub: ${u.cyan(t.github_url)}`),console.log(),console.log(u.dim("To download this dataset:")),console.log(u.dim(`  nemar dataset download ${t.dataset_id}`)),console.log(),WPt(t.dataset_id,n),console.log(u.yellow("Note: This dataset is private. Only the owner and designated collaborators can")),console.log(u.yellow("download it, and only through the NEMAR CLI (not direct git-annex commands).")),console.log(u.yellow("After publishing, the data will be publicly available for everyone."))}jd();wp();async function H1e(e,t={}){let n=await xge(e.absolutePath);if(!n.success)return console.log(u.red(n.error)),console.log(u.yellow("Re-run the same command to retry.")),Ne;if(n.cleared>0)console.log(u.yellow(`  Cleared ${n.cleared} assume-unchanged flag(s) an earlier, interrupted save left on annexed files`));let r=await I_e(e.absolutePath);if(r.status==="error")return console.log(u.red(r.error)),Ne;if(r.status==="warning")console.log(u.yellow(`  ${r.warning}`));if(r.status==="restored")console.log(u.yellow("  Put back git-annex's filter process, which an earlier, interrupted upload had left out of this repository's configuration"));let o=await pxe(e.absolutePath,e.options,e.dataFiles,e.filesToUpload,e.uploadProgress,e.datasetInfo,{openRemote:t.openRemote,...t.primeMinBytes===void 0?{}:{primeMinBytes:t.primeMinBytes},...t.primeOnSuspended?{primeOnSuspended:t.primeOnSuspended}:{}});if(o.status==="fail")return Ne;let{progress:s,annexedPaths:i}=o.value;if(M1e(e.absolutePath,e.coAuthorEnrichment,s),(await(t.saveStep??L1e)(e.absolutePath,e.author,s,{annexedPaths:i,verifyRemote:wc,...t.skipMinBytes===void 0?{}:{skipMinBytes:t.skipMinBytes},...t.saveInactivityWarningAfterMs===void 0?{}:{inactivityWarningAfterMs:t.saveInactivityWarningAfterMs},...t.saveSpinnerStream===void 0?{}:{spinnerStream:t.saveSpinnerStream}})).status==="fail")return Ne;return mn(s)}He();_l();Fp();Ow();fn();qt();import{randomBytes as CIt}from"crypto";import{constants as Nq,accessSync as AIt,chmodSync as OIt,chownSync as TIt,closeSync as Lq,copyFileSync as PIt,existsSync as mCe,fsyncSync as hCe,lstatSync as Ic,mkdirSync as IIt,mkdtempSync as NIt,openSync as qq,readSync as FIt,readdirSync as MIt,renameSync as jIt,rmSync as Bq,rmdirSync as LIt,statSync as gCe,writeSync as qIt}from"fs";import{tmpdir as BIt}from"os";import{dirname as hC,join as ia}from"path";He();import{lstatSync as xIt,readdirSync as vIt,statSync as nCe}from"fs";import{open as kIt}from"fs/promises";import{join as tCe}from"path";Qs();uo();_l();var K1e="nemar-identifier-scan/1.0 (+https://docs.nemar.org/policies/takedown/)",KPt="https://nemar-api-dev.sccn-org.workers.dev",JPt="https://data.nemar.org",YPt="https://nemar.s3.us-east-2.amazonaws.com",XPt="https://api.github.com";function fC(e,t){if(!Number.isSafeInteger(t)||t<1)throw RangeError(`${e} must be a positive integer, got ${t}`)}async function lC(e,t,n){fC("pool size",t);let r=0,o=Array.from({length:Math.min(t,e.length)},async()=>{while(r<e.length){let a=e[r++];await n(a)}}),i=(await Promise.allSettled(o)).find((a)=>a.status==="rejected");if(i)throw i.reason}function QPt(e){fC("limit",e);let t=0,n=[];return async(r)=>{if(t>=e)await new Promise((o)=>n.push(o));else t++;try{return await r()}finally{let o=n.shift();if(o)o();else t--}}}class Zn extends Error{cls;status;retryable;retryAfterMs;constructor(e,t={}){super(e);this.name="ReadFailure",this.cls=e,this.status=t.status,this.retryable=t.retryable??!1,this.retryAfterMs=t.retryAfterMs}}function ZPt(e,t=Date.now()){let n=e?.trim();if(!n)return;if(/^\d+$/.test(n))return Number(n)*1000;let r=Date.parse(n);return Number.isNaN(r)?void 0:Math.max(0,r-t)}function eIt(e,t){let n=e>=500||e===429;return new Zn(`http-${e}`,{status:e,retryable:n,retryAfterMs:n?ZPt(t):void 0})}class Aq extends Error{constructor(e){super(e);this.name="RunAborted"}}function tIt(e){fC("abort streak",e.streak);let t=e.now??Date.now,n={tripped:null},r=(o)=>{let s=0,i=0,a=(c)=>{throw n.tripped=new Aq(c),n.tripped};return{check(){if(n.tripped)throw n.tripped},ok(){s=0},pausedUntilMs(){return i},observe(c){if(n.tripped)throw n.tripped;if(c.retryAfterMs!==void 0&&c.retryAfterMs>e.retryAfterCapMs)a(`${o} asked to wait ${Math.round(c.retryAfterMs/1000)} s (Retry-After), over the ${Math.round(e.retryAfterCapMs/1000)} s cap (${c.cls})`);if(c.retryAfterMs!==void 0)i=Math.max(i,t()+c.retryAfterMs);if(!c.retryable){s=0;return}if(s++,s>=e.streak)a(`${s} consecutive 429, 5xx, timeout or network failures from ${o} (last ${c.cls})`)}}};return{worker:r("the Worker"),direct:r("direct reads")}}function V1e(e){let t=e instanceof Error?e.name:"";return new Zn(t==="TimeoutError"||t==="AbortError"?"timeout":"network",{retryable:!0})}function nIt(e){if(e instanceof Zn)return e.cls;return`error-${e instanceof Error?e.name:"unknown"}`}async function rIt(e,t={}){let n=t.tries??3,r=t.baseMs??400,o=t.sleep??((s)=>new Promise((i)=>setTimeout(i,s)));fC("tries",n);for(let s=1;;s++)try{return await e()}catch(i){if(!(i instanceof Zn&&i.retryable)||s>=n)throw i;let c=i.retryAfterMs??0;if(c>(t.retryAfterCapMs??30000))throw i;await o(Math.max(r*2**(s-1),c))}}async function oIt(e){await e.body?.cancel().catch(()=>{return})}async function sIt(e,t,n={}){let r;try{r=await fetch(e,{headers:{Range:`bytes=0-${t-1}`,"Accept-Encoding":"identity","User-Agent":n.userAgent??K1e},signal:AbortSignal.timeout(n.timeoutMs??30000)})}catch(a){throw V1e(a)}if(r.status!==200&&r.status!==206)throw await oIt(r),eIt(r.status,r.headers.get("retry-after"));let o=r.body?.getReader();if(!o)throw new Zn("no-body");let s=new Uint8Array(t),i=0;try{while(i<t){let{done:a,value:c}=await o.read();if(a||!c)break;let l=Math.min(c.length,t-i);s.set(c.subarray(0,l),i),i+=l}}catch(a){throw V1e(a)}finally{await o.cancel().catch(()=>{return})}if(i<(n.minBytes??0))throw new Zn("short-body");return s.subarray(0,i)}var J1e={sideFileBytes:2097152,participantsBytes:16777216};function iIt(e,t){let n=/An error occurred \(([A-Za-z0-9]{1,40})\)/.exec(e)?.[1];if(n)return/^\d+$/.test(n)?`aws/http-${n}`:`aws/error-${n}`;return`aws/exit-${t}`}async function aIt(e,t,n={}){let r;try{let o=Bun.spawn(["aws","s3","cp",`s3://nemar/${e}/version/${t}.json`,"-"],{stdout:"pipe",stderr:"pipe",...n.env?{env:n.env}:{}}),s=!1;r=setTimeout(()=>{s=!0,o.kill("SIGKILL")},n.timeoutMs??600000);let[i,a,c]=await Promise.all([new Response(o.stdout).text(),new Response(o.stderr).text(),o.exited]);if(s)throw new Zn("aws/timeout");if(c!==0)throw new Zn(iIt(a,c));return i}catch(o){if(o instanceof Zn)throw o;throw new Zn("aws/unavailable")}finally{clearTimeout(r)}}function cIt(){let e;return async()=>{if(e!==void 0)return e;if(process.env.GITHUB_TOKEN)return e=process.env.GITHUB_TOKEN,e;try{let t=Bun.spawn(["gh","auth","token"],{stdout:"pipe",stderr:"ignore"}),n=(await new Response(t.stdout).text()).trim();e=n===""?null:n}catch{e=null}return e}}var uC=(e)=>e.replace(/\/+$/,"");function Y1e(e={}){let t=e.retryAfterCapMs??30000,n=e.awsTimeoutMs??600000;return{api:uC(e.api??process.env.NEMAR_API_BASE??KPt),data:uC(e.data??process.env.NEMAR_DATA_BASE??JPt),s3Base:uC(e.s3Base??YPt),githubApi:uC(e.githubApi??XPt),userAgent:e.userAgent??K1e,fileConcurrency:e.fileConcurrency??24,workerLimit:QPt(e.workerConcurrency??6),timeoutMs:e.timeoutMs??30000,manifestTimeoutMs:e.manifestTimeoutMs??120000,retryBaseMs:e.retryBaseMs??400,sleep:e.sleep??((r)=>new Promise((o)=>setTimeout(o,r))),now:e.now??Date.now,retryAfterCapMs:t,breakers:tIt({streak:e.abortStreak??25,retryAfterCapMs:t,now:e.now??Date.now}),limits:{treeHeaderSample:300,scansTables:1,jsonFiles:300,textFiles:300,sideFileBytes:65536,participantsBytes:1048576,...e.limits},readVersionManifest:e.readVersionManifest??((r,o)=>aIt(r,o,{timeoutMs:n,env:e.awsEnv})),githubToken:e.githubToken??cIt(),...e.readEntryHead?{readEntryHead:e.readEntryHead}:{}}}var X1e=(e,t)=>t.startsWith(`${e.data}/`),lIt=(e,t)=>X1e(e,t)||t.startsWith(`${e.api}/`)?e.breakers.worker:e.breakers.direct;async function uIt(e,t,n){let r=lIt(e,t);r.check();let o=r.pausedUntilMs()-e.now();if(o>0)await e.sleep(o),r.check();try{let s=await n();return r.ok(),s}catch(s){if(s instanceof Zn)r.observe(s);throw s}}var dIt=(e,t)=>({...t===void 0?{}:{tries:t},baseMs:e.retryBaseMs,sleep:e.sleep,retryAfterCapMs:e.retryAfterCapMs});var z1e=(e)=>/sub-([^/_]+)/.exec(e)?.[1]??"?";function G1e(e,t,n){if(t<1)return[];if(e.length<=t)return[...e];let r=new Map;for(let c of e){let l=n(c),d=r.get(l);if(d)d.push(c);else r.set(l,[c])}let o=[...r.entries()].sort(([c],[l])=>c<l?-1:c>l?1:0).map(([,c])=>c);if(o.length>t)return Array.from({length:t},(c,l)=>o[Math.floor((l+0.5)*o.length/t)][0]);let s=o.map((c,l)=>({list:c,index:l})).sort((c,l)=>c.list.length-l.list.length||c.index-l.index),i=t,a=[];return s.forEach(({list:c},l)=>{let d=Math.min(c.length,Math.ceil(i/(s.length-l)));for(let f=0;f<d;f++)a.push(c[Math.floor((f+0.5)*c.length/d)]);i-=d}),a}var fIt=(e)=>e.severity==="identifier"&&Dwe.has(e.kind),pIt=(e)=>pp.has(e.kind);function Q1e(e){return e.headerRead===e.edfCount&&e.incompleteReasons.length===0}function mIt(e){if(e.findings.some(fIt))return"direct-identifiers";if(e.findings.some((t)=>!pIt(t)))return"review";if(!Q1e(e))return"unchecked";if(e.edfCount>0&&e.unscreenedCount>0)return"clean-edf-only-others-unscreened";if(e.edfCount===0)return e.unscreenedCount>0?"not-screened":"no-recordings";return e.findings.length>0?"dates-only":"clean"}var hIt=/\.(edf|bdf)$/i,gIt=(e)=>e.edf===!0||hIt.test(e.path);function yIt(e){return{edf:e.filter(gIt),participants:e.find((t)=>t.path==="participants.tsv"),scans:e.filter((t)=>t.path.endsWith("_scans.tsv")),json:e.filter((t)=>t.path.endsWith(".json")).filter((t)=>t.path.startsWith("sourcedata/")||!bIt.test(t.path)).filter((t)=>!wIt.test(t.path)),text:e.filter((t)=>_It.test(t.path)).filter((t)=>t.path.startsWith("sourcedata/")||t.path.startsWith("code/"))}}var bIt=/_(eeg|ieeg|meg|emg|nirs|beh|events|channels|electrodes|coordsystem|scans|physio|stim|photo|T1w|bold)\.(json|tsv)$/,wIt=/(^|\/)(dataset_description|participants|genetic_info)\.json$/,_It=/\.(py|m|r|txt|md|ya?ml|xml|iml|cfg|ini)$/i;function Z1e(e,t,n,r=0){let o=()=>uIt(e,t.url,()=>{let s={minBytes:r,userAgent:e.userAgent,timeoutMs:e.timeoutMs};return e.readEntryHead?e.readEntryHead(t,n,s):sIt(t.url,n,s)});return rIt(()=>X1e(e,t.url)?e.workerLimit(o):o(),dIt(e))}async function dC(e,t,n){let r=await Z1e(e,t,n),o=t.size===null?r.length>=n:t.size>n;return{text:new TextDecoder("utf-8",{fatal:!1}).decode(r),truncated:o}}function Ty(e,t){for(let n of t)e.push(n)}var W1e="edf/superseded-absent";async function eCe(e,t,n,r,o,s={}){let i=r.map((Ce)=>Ce.path),a=o==="clone",c=(Ce,st,Fn)=>a?[...Ce]:G1e(Ce,st,Fn),l=[...hD([...i,...s.extraPaths??[]])],d=jwe(i),f=Object.values(d.unscreened).reduce((Ce,st)=>Ce+st,0),p={},m=(Ce,st)=>{if(st instanceof Aq)throw st;let Fn=`${Ce}/${nIt(st)}`;p[Fn]=(p[Fn]??0)+1},h=(Ce)=>z1e(Ce.path),g=yIt(r),y=new Set(s.supersededEdf??[]),b=[...g.edf,...y],{participants:_,scans:x,json:k,text:v}=g,C=o==="git-tree"?G1e(b,e.limits.treeHeaderSample,h):[...b],T=0,V=0,A=0,F=0,M={},U=new Set,B=new Set,P=new Set,O=new Set,H=new Set,re=new Set;await lC(C,e.fileConcurrency,async(Ce)=>{try{let st=await Z1e(e,Ce,kt,kt),Fn=Td(st),{patient:Gl}=pD(st);if(!Fn.some((ws)=>ws.kind==="edf-unreadable")){U.add(Gl);let ws=Gl.split(/\s+/);if(ws.length>=4)P.add(ws[0]),H.add(ws[2]),O.add(ws[3])}if(re.add(z1e(Ce.path)),Fn.some((ws)=>ws.severity==="identifier"))F++,B.add(Gl);Ty(l,Fn);for(let ws of new Set(Fn.map((Iy)=>Iy.kind)))M[ws]=(M[ws]??0)+1;T++}catch(st){if(y.has(Ce)&&st instanceof Zn&&st.status===404){A++,p[W1e]=(p[W1e]??0)+1;return}V++,m("edf",st)}});let Ee=b.length-A,Zt=!1,pt=!1;if(_&&_.size!==0)try{let{text:Ce,truncated:st}=await dC(e,_,e.limits.participantsBytes),Fn=Ce.indexOf(`
+`;F1e(s,a)}console.log(u.dim("  Updated .bidsignore for NEMAR metadata"))}catch(r){console.log(u.yellow(`  Warning: Could not update .bidsignore: ${G(r)}`)),console.log(u.dim("  Upload will continue without author enrichment."))}vl(n,"metadata_write"),qr(e,n)}else console.log(u.dim("  Metadata write already completed (skipping)"))}var j1e=1073741824;function HPt(e,t,n=j1e){let r=[],o=0;for(let s of t){let i=e.files[s];if(!i||i.mtimeMs===void 0)continue;r.push({path:s,size:i.size,mtimeMs:i.mtimeMs}),o+=i.size}return o>=n?r:null}function VPt(e,t){return t.filter((n)=>{try{return Fo(n.path,BPt(UPt(e,n.path)).size)}catch{return!0}})}function zPt(e){let t=0;for(let n of Object.values(e.files))t+=n.size;return t}function GPt(e){return["Warning: saving dataset changes has produced no stdout or stderr for",`${ID(e)}. git add -A is still running.`,"Wait, or interrupt and rerun the upload; the save step will run again."].join(" ")}async function L1e(e,t,n,r={}){if(!Ji(n,"dataset_save")){let o=D({text:"Saving dataset changes...",...r.spinnerStream?{stream:r.spinnerStream}:{}}).start(),s=r.skipMinBytes??j1e,i=[];if(zPt(n)>=s){let c=r.annexedPaths??null;if(c===null)try{c=await Md(e)}catch(l){console.log(u.dim(`  Could not list annexed files (${G(l)}); staging will re-read them`))}if(c!==null)i=VPt(e,HPt(n,c,s)??[])}let a=await pl(e,"Initial NEMAR dataset upload",t,{skipContentCheck:i,onInactivityWarning:(c)=>{o=Fw(o,GPt(c))},...r.inactivityWarningAfterMs===void 0?{}:{inactivityWarningAfterMs:r.inactivityWarningAfterMs}});if(!a.success)return qr(e,n),_o(o,"Failed to save dataset",a.error),console.log(),console.log(u.yellow("Re-run the same command to resume from this step.")),Ne;if(r.verifyRemote){let c;try{c=await lM(e,r.verifyRemote)}catch(l){return qr(e,n),_o(o,"Could not confirm the saved files are at the S3 remote",l),console.log(),console.log(u.yellow("Re-run the same command to resume from this step.")),Ne}if(c.length>0){kl(n,"s3_upload"),qr(e,n);let l=XS(c.slice(0,5)),d=c.length>5?` (and ${c.length-5} more)`:"";return _o(o,"Saved files are not at the S3 remote",`${c.length} annexed file(s) in the commit are not recorded at the remote: ${l}${d}. The save itself annexed them, after the upload step had run.`),console.log(),console.log(u.yellow("Re-run the same command: it uploads them and saves again.")),Ne}}o.succeed("Dataset changes saved"),vl(n,"dataset_save"),qr(e,n)}else console.log(u.dim("  Dataset save already completed (skipping)"));return mn()}async function q1e(e,t){if(!Ji(t,"github_push")){let n=D("Pushing metadata to GitHub...").start(),r=await ur(e);if(!r.success)return qr(e,t),_o(n,"Failed to push to GitHub",r.error),console.log(),console.log(u.yellow("Re-run the same command to resume from this step.")),Ne;if(r.warning)n.warn("Metadata pushed to GitHub (with warning)"),console.log(u.yellow(`  ${r.warning}`));else n.succeed("Metadata pushed to GitHub");vl(t,"github_push"),qr(e,t)}else console.log(u.dim("  GitHub push already completed (skipping)"));return mn()}async function B1e(e,t,n){if(!Ji(n,"ci_deploy")){let r=D("Setting up BIDS validation CI...").start(),o="configured";try{await dl(t),r.succeed("BIDS validation CI configured")}catch(s){if(o="not-configured",s instanceof L&&s.statusCode===403)r.info("CI workflow will be configured by an admin");else{let i=s instanceof Error?s.message:String(s);r.warn(`Could not configure CI: ${i}`),console.log(u.dim(`  An admin can add it later with: nemar admin ci add ${t}`))}}return vl(n,"ci_deploy"),qr(e,n),o}return console.log(u.dim("  CI deploy already completed (skipping)")),"unknown"}function WPt(e,t){let n=e.startsWith("xx");if(t==="not-configured"){if(n)return;console.log("BIDS validation is not set up yet."),console.log(`  CI is set up when you request publication: ${u.cyan(`nemar dataset publish request ${e}`)}`),console.log();return}if(console.log("BIDS validation runs on GitHub after the upload."),console.log(`  Check it with: ${u.cyan(`nemar dataset ci ${e}`)}`),!n)console.log(`  Once it has passed, request publication: ${u.cyan(`nemar dataset publish request ${e}`)}`);console.log()}function U1e(e,t,n="unknown"){Nw(e),R_e(e),console.log(),console.log(u.green.bold("Upload complete!")),console.log(),console.log(`  Dataset ID: ${u.cyan(t.dataset_id)}`),console.log(`  GitHub: ${u.cyan(t.github_url)}`),console.log(),console.log(u.dim("To download this dataset:")),console.log(u.dim(`  nemar dataset download ${t.dataset_id}`)),console.log(),WPt(t.dataset_id,n),console.log(u.yellow("Note: This dataset is private. Only the owner and designated collaborators can")),console.log(u.yellow("download it, and only through the NEMAR CLI (not direct git-annex commands).")),console.log(u.yellow("After publishing, the data will be publicly available for everyone."))}jd();wp();async function H1e(e,t={}){let n=await xge(e.absolutePath);if(!n.success)return console.log(u.red(n.error)),console.log(u.yellow("Re-run the same command to retry.")),Ne;if(n.cleared>0)console.log(u.yellow(`  Cleared ${n.cleared} assume-unchanged flag(s) an earlier, interrupted save left on annexed files`));let r=await I_e(e.absolutePath);if(r.status==="error")return console.log(u.red(r.error)),Ne;if(r.status==="warning")console.log(u.yellow(`  ${r.warning}`));if(r.status==="restored")console.log(u.yellow("  Put back git-annex's filter process, which an earlier, interrupted upload had left out of this repository's configuration"));let o=await pxe(e.absolutePath,e.options,e.dataFiles,e.filesToUpload,e.uploadProgress,e.datasetInfo,{openRemote:t.openRemote,...t.primeMinBytes===void 0?{}:{primeMinBytes:t.primeMinBytes},...t.primeOnSuspended?{primeOnSuspended:t.primeOnSuspended}:{}});if(o.status==="fail")return Ne;let{progress:s,annexedPaths:i}=o.value;if(M1e(e.absolutePath,e.coAuthorEnrichment,s),(await(t.saveStep??L1e)(e.absolutePath,e.author,s,{annexedPaths:i,verifyRemote:wc,...t.skipMinBytes===void 0?{}:{skipMinBytes:t.skipMinBytes},...t.saveInactivityWarningAfterMs===void 0?{}:{inactivityWarningAfterMs:t.saveInactivityWarningAfterMs},...t.saveSpinnerStream===void 0?{}:{spinnerStream:t.saveSpinnerStream}})).status==="fail")return Ne;return mn(s)}He();_l();Fp();Ow();fn();qt();import{randomBytes as CIt}from"crypto";import{constants as Nq,accessSync as AIt,chmodSync as OIt,chownSync as TIt,closeSync as Lq,copyFileSync as PIt,existsSync as mCe,fsyncSync as hCe,lstatSync as Ic,mkdirSync as IIt,mkdtempSync as NIt,openSync as qq,readSync as FIt,readdirSync as MIt,renameSync as jIt,rmSync as Bq,rmdirSync as LIt,statSync as gCe,writeSync as qIt}from"fs";import{tmpdir as BIt}from"os";import{dirname as hC,join as ia}from"path";He();import{lstatSync as xIt,readdirSync as vIt,statSync as nCe}from"fs";import{open as kIt}from"fs/promises";import{join as tCe}from"path";Qs();uo();_l();var K1e="nemar-identifier-scan/1.0 (+https://docs.nemar.org/policies/takedown/)",KPt="https://api.nemar.org",JPt="https://data.nemar.org",YPt="https://nemar.s3.us-east-2.amazonaws.com",XPt="https://api.github.com";function fC(e,t){if(!Number.isSafeInteger(t)||t<1)throw RangeError(`${e} must be a positive integer, got ${t}`)}async function lC(e,t,n){fC("pool size",t);let r=0,o=Array.from({length:Math.min(t,e.length)},async()=>{while(r<e.length){let a=e[r++];await n(a)}}),i=(await Promise.allSettled(o)).find((a)=>a.status==="rejected");if(i)throw i.reason}function QPt(e){fC("limit",e);let t=0,n=[];return async(r)=>{if(t>=e)await new Promise((o)=>n.push(o));else t++;try{return await r()}finally{let o=n.shift();if(o)o();else t--}}}class Zn extends Error{cls;status;retryable;retryAfterMs;constructor(e,t={}){super(e);this.name="ReadFailure",this.cls=e,this.status=t.status,this.retryable=t.retryable??!1,this.retryAfterMs=t.retryAfterMs}}function ZPt(e,t=Date.now()){let n=e?.trim();if(!n)return;if(/^\d+$/.test(n))return Number(n)*1000;let r=Date.parse(n);return Number.isNaN(r)?void 0:Math.max(0,r-t)}function eIt(e,t){let n=e>=500||e===429;return new Zn(`http-${e}`,{status:e,retryable:n,retryAfterMs:n?ZPt(t):void 0})}class Aq extends Error{constructor(e){super(e);this.name="RunAborted"}}function tIt(e){fC("abort streak",e.streak);let t=e.now??Date.now,n={tripped:null},r=(o)=>{let s=0,i=0,a=(c)=>{throw n.tripped=new Aq(c),n.tripped};return{check(){if(n.tripped)throw n.tripped},ok(){s=0},pausedUntilMs(){return i},observe(c){if(n.tripped)throw n.tripped;if(c.retryAfterMs!==void 0&&c.retryAfterMs>e.retryAfterCapMs)a(`${o} asked to wait ${Math.round(c.retryAfterMs/1000)} s (Retry-After), over the ${Math.round(e.retryAfterCapMs/1000)} s cap (${c.cls})`);if(c.retryAfterMs!==void 0)i=Math.max(i,t()+c.retryAfterMs);if(!c.retryable){s=0;return}if(s++,s>=e.streak)a(`${s} consecutive 429, 5xx, timeout or network failures from ${o} (last ${c.cls})`)}}};return{worker:r("the Worker"),direct:r("direct reads")}}function V1e(e){let t=e instanceof Error?e.name:"";return new Zn(t==="TimeoutError"||t==="AbortError"?"timeout":"network",{retryable:!0})}function nIt(e){if(e instanceof Zn)return e.cls;return`error-${e instanceof Error?e.name:"unknown"}`}async function rIt(e,t={}){let n=t.tries??3,r=t.baseMs??400,o=t.sleep??((s)=>new Promise((i)=>setTimeout(i,s)));fC("tries",n);for(let s=1;;s++)try{return await e()}catch(i){if(!(i instanceof Zn&&i.retryable)||s>=n)throw i;let c=i.retryAfterMs??0;if(c>(t.retryAfterCapMs??30000))throw i;await o(Math.max(r*2**(s-1),c))}}async function oIt(e){await e.body?.cancel().catch(()=>{return})}async function sIt(e,t,n={}){let r;try{r=await fetch(e,{headers:{Range:`bytes=0-${t-1}`,"Accept-Encoding":"identity","User-Agent":n.userAgent??K1e},signal:AbortSignal.timeout(n.timeoutMs??30000)})}catch(a){throw V1e(a)}if(r.status!==200&&r.status!==206)throw await oIt(r),eIt(r.status,r.headers.get("retry-after"));let o=r.body?.getReader();if(!o)throw new Zn("no-body");let s=new Uint8Array(t),i=0;try{while(i<t){let{done:a,value:c}=await o.read();if(a||!c)break;let l=Math.min(c.length,t-i);s.set(c.subarray(0,l),i),i+=l}}catch(a){throw V1e(a)}finally{await o.cancel().catch(()=>{return})}if(i<(n.minBytes??0))throw new Zn("short-body");return s.subarray(0,i)}var J1e={sideFileBytes:2097152,participantsBytes:16777216};function iIt(e,t){let n=/An error occurred \(([A-Za-z0-9]{1,40})\)/.exec(e)?.[1];if(n)return/^\d+$/.test(n)?`aws/http-${n}`:`aws/error-${n}`;return`aws/exit-${t}`}async function aIt(e,t,n={}){let r;try{let o=Bun.spawn(["aws","s3","cp",`s3://nemar/${e}/version/${t}.json`,"-"],{stdout:"pipe",stderr:"pipe",...n.env?{env:n.env}:{}}),s=!1;r=setTimeout(()=>{s=!0,o.kill("SIGKILL")},n.timeoutMs??600000);let[i,a,c]=await Promise.all([new Response(o.stdout).text(),new Response(o.stderr).text(),o.exited]);if(s)throw new Zn("aws/timeout");if(c!==0)throw new Zn(iIt(a,c));return i}catch(o){if(o instanceof Zn)throw o;throw new Zn("aws/unavailable")}finally{clearTimeout(r)}}function cIt(){let e;return async()=>{if(e!==void 0)return e;if(process.env.GITHUB_TOKEN)return e=process.env.GITHUB_TOKEN,e;try{let t=Bun.spawn(["gh","auth","token"],{stdout:"pipe",stderr:"ignore"}),n=(await new Response(t.stdout).text()).trim();e=n===""?null:n}catch{e=null}return e}}var uC=(e)=>e.replace(/\/+$/,"");function Y1e(e={}){let t=e.retryAfterCapMs??30000,n=e.awsTimeoutMs??600000;return{api:uC(e.api??process.env.NEMAR_API_BASE??KPt),data:uC(e.data??process.env.NEMAR_DATA_BASE??JPt),s3Base:uC(e.s3Base??YPt),githubApi:uC(e.githubApi??XPt),userAgent:e.userAgent??K1e,fileConcurrency:e.fileConcurrency??24,workerLimit:QPt(e.workerConcurrency??6),timeoutMs:e.timeoutMs??30000,manifestTimeoutMs:e.manifestTimeoutMs??120000,retryBaseMs:e.retryBaseMs??400,sleep:e.sleep??((r)=>new Promise((o)=>setTimeout(o,r))),now:e.now??Date.now,retryAfterCapMs:t,breakers:tIt({streak:e.abortStreak??25,retryAfterCapMs:t,now:e.now??Date.now}),limits:{treeHeaderSample:300,scansTables:1,jsonFiles:300,textFiles:300,sideFileBytes:65536,participantsBytes:1048576,...e.limits},readVersionManifest:e.readVersionManifest??((r,o)=>aIt(r,o,{timeoutMs:n,env:e.awsEnv})),githubToken:e.githubToken??cIt(),...e.readEntryHead?{readEntryHead:e.readEntryHead}:{}}}var X1e=(e,t)=>t.startsWith(`${e.data}/`),lIt=(e,t)=>X1e(e,t)||t.startsWith(`${e.api}/`)?e.breakers.worker:e.breakers.direct;async function uIt(e,t,n){let r=lIt(e,t);r.check();let o=r.pausedUntilMs()-e.now();if(o>0)await e.sleep(o),r.check();try{let s=await n();return r.ok(),s}catch(s){if(s instanceof Zn)r.observe(s);throw s}}var dIt=(e,t)=>({...t===void 0?{}:{tries:t},baseMs:e.retryBaseMs,sleep:e.sleep,retryAfterCapMs:e.retryAfterCapMs});var z1e=(e)=>/sub-([^/_]+)/.exec(e)?.[1]??"?";function G1e(e,t,n){if(t<1)return[];if(e.length<=t)return[...e];let r=new Map;for(let c of e){let l=n(c),d=r.get(l);if(d)d.push(c);else r.set(l,[c])}let o=[...r.entries()].sort(([c],[l])=>c<l?-1:c>l?1:0).map(([,c])=>c);if(o.length>t)return Array.from({length:t},(c,l)=>o[Math.floor((l+0.5)*o.length/t)][0]);let s=o.map((c,l)=>({list:c,index:l})).sort((c,l)=>c.list.length-l.list.length||c.index-l.index),i=t,a=[];return s.forEach(({list:c},l)=>{let d=Math.min(c.length,Math.ceil(i/(s.length-l)));for(let f=0;f<d;f++)a.push(c[Math.floor((f+0.5)*c.length/d)]);i-=d}),a}var fIt=(e)=>e.severity==="identifier"&&Dwe.has(e.kind),pIt=(e)=>pp.has(e.kind);function Q1e(e){return e.headerRead===e.edfCount&&e.incompleteReasons.length===0}function mIt(e){if(e.findings.some(fIt))return"direct-identifiers";if(e.findings.some((t)=>!pIt(t)))return"review";if(!Q1e(e))return"unchecked";if(e.edfCount>0&&e.unscreenedCount>0)return"clean-edf-only-others-unscreened";if(e.edfCount===0)return e.unscreenedCount>0?"not-screened":"no-recordings";return e.findings.length>0?"dates-only":"clean"}var hIt=/\.(edf|bdf)$/i,gIt=(e)=>e.edf===!0||hIt.test(e.path);function yIt(e){return{edf:e.filter(gIt),participants:e.find((t)=>t.path==="participants.tsv"),scans:e.filter((t)=>t.path.endsWith("_scans.tsv")),json:e.filter((t)=>t.path.endsWith(".json")).filter((t)=>t.path.startsWith("sourcedata/")||!bIt.test(t.path)).filter((t)=>!wIt.test(t.path)),text:e.filter((t)=>_It.test(t.path)).filter((t)=>t.path.startsWith("sourcedata/")||t.path.startsWith("code/"))}}var bIt=/_(eeg|ieeg|meg|emg|nirs|beh|events|channels|electrodes|coordsystem|scans|physio|stim|photo|T1w|bold)\.(json|tsv)$/,wIt=/(^|\/)(dataset_description|participants|genetic_info)\.json$/,_It=/\.(py|m|r|txt|md|ya?ml|xml|iml|cfg|ini)$/i;function Z1e(e,t,n,r=0){let o=()=>uIt(e,t.url,()=>{let s={minBytes:r,userAgent:e.userAgent,timeoutMs:e.timeoutMs};return e.readEntryHead?e.readEntryHead(t,n,s):sIt(t.url,n,s)});return rIt(()=>X1e(e,t.url)?e.workerLimit(o):o(),dIt(e))}async function dC(e,t,n){let r=await Z1e(e,t,n),o=t.size===null?r.length>=n:t.size>n;return{text:new TextDecoder("utf-8",{fatal:!1}).decode(r),truncated:o}}function Ty(e,t){for(let n of t)e.push(n)}var W1e="edf/superseded-absent";async function eCe(e,t,n,r,o,s={}){let i=r.map((Ce)=>Ce.path),a=o==="clone",c=(Ce,st,Fn)=>a?[...Ce]:G1e(Ce,st,Fn),l=[...hD([...i,...s.extraPaths??[]])],d=jwe(i),f=Object.values(d.unscreened).reduce((Ce,st)=>Ce+st,0),p={},m=(Ce,st)=>{if(st instanceof Aq)throw st;let Fn=`${Ce}/${nIt(st)}`;p[Fn]=(p[Fn]??0)+1},h=(Ce)=>z1e(Ce.path),g=yIt(r),y=new Set(s.supersededEdf??[]),b=[...g.edf,...y],{participants:_,scans:x,json:k,text:v}=g,C=o==="git-tree"?G1e(b,e.limits.treeHeaderSample,h):[...b],T=0,V=0,A=0,F=0,M={},U=new Set,B=new Set,P=new Set,O=new Set,H=new Set,re=new Set;await lC(C,e.fileConcurrency,async(Ce)=>{try{let st=await Z1e(e,Ce,kt,kt),Fn=Td(st),{patient:Gl}=pD(st);if(!Fn.some((ws)=>ws.kind==="edf-unreadable")){U.add(Gl);let ws=Gl.split(/\s+/);if(ws.length>=4)P.add(ws[0]),H.add(ws[2]),O.add(ws[3])}if(re.add(z1e(Ce.path)),Fn.some((ws)=>ws.severity==="identifier"))F++,B.add(Gl);Ty(l,Fn);for(let ws of new Set(Fn.map((Iy)=>Iy.kind)))M[ws]=(M[ws]??0)+1;T++}catch(st){if(y.has(Ce)&&st instanceof Zn&&st.status===404){A++,p[W1e]=(p[W1e]??0)+1;return}V++,m("edf",st)}});let Ee=b.length-A,Zt=!1,pt=!1;if(_&&_.size!==0)try{let{text:Ce,truncated:st}=await dC(e,_,e.limits.participantsBytes),Fn=Ce.indexOf(`
 `);if(Fn<0&&st)throw new Zn("header-truncated");Ty(l,Iwe(Fn<0?Ce:Ce.slice(0,Fn))),Ty(l,Fwe(Ce)),pt=st}catch(Ce){Zt=!0,m("participants",Ce)}let Ze=c(x,e.limits.scansTables,h),oe=0;await lC(Ze,e.fileConcurrency,async(Ce)=>{if(Ce.size===0){oe++;return}try{let{text:st}=await dC(e,Ce,e.limits.sideFileBytes);Ty(l,mD(st)),oe++}catch(st){m("scans",st)}});let je=e.limits.sideFileBytes,Ie=(Ce)=>Ce.size!==null&&Ce.size>je,Q=c(k.filter((Ce)=>!Ie(Ce)),e.limits.jsonFiles,h),mt=c(v.filter((Ce)=>!Ie(Ce)),e.limits.textFiles,h),Ue=0,W=0;await lC(Q,e.fileConcurrency,async(Ce)=>{if(Ce.size===0){Ue++;return}try{let{text:st}=await dC(e,Ce,je),Fn;try{Fn=JSON.parse(st)}catch{throw new Zn("json-parse")}Ty(l,fp(Fn)),Ue++}catch(st){m("json",st)}}),await lC(mt,e.fileConcurrency,async(Ce)=>{if(Ce.size===0){W++;return}try{let{text:st}=await dC(e,Ce,je);Ty(l,Mwe(st)),W++}catch(st){m("text",st)}});let J={edf_headers:{candidates:Ee,oversize:0,selected:C.length-A,scanned:T},scans_tables:{candidates:x.length,oversize:0,selected:Ze.length,scanned:oe},json_files:{candidates:k.length,oversize:k.filter(Ie).length,selected:Q.length,scanned:Ue},text_files:{candidates:v.length,oversize:v.filter(Ie).length,selected:mt.length,scanned:W}},le=new Set,ne=(Ce,st)=>{if(st.oversize>0)le.add(`${Ce}-oversize`);if(st.candidates-st.oversize>st.selected)le.add(`${Ce}-sampled`);if(st.scanned<st.selected)le.add(`${Ce}-unread`)};if(ne("edf-headers",J.edf_headers),ne("json",J.json_files),ne("text",J.text_files),J.scans_tables.scanned<J.scans_tables.selected)le.add("scans-unread");if(Zt)le.add("participants-unread");if(pt)le.add("participants-truncated");for(let Ce of s.extraIncompleteReasons??[])le.add(Ce);let Le=[...le].sort(),It={findings:l,edfCount:Ee,headerRead:T,unscreenedCount:f,incompleteReasons:Le},wr=l.filter((Ce)=>Ce.severity==="identifier"),Fc=Object.entries(p).filter(([Ce])=>!Ce.startsWith("edf/")).reduce((Ce,[,st])=>Ce+st,0);return{id:t,version:n,scanned_at:new Date().toISOString(),manifest_source:o,status:mIt(It),incomplete:!Q1e(It),incomplete_reasons:Le,files:{total:r.length,edf_bdf:Ee,header_read:T,header_read_failed:V},sampling:J,read_failures:p,edf_bdf_files_flagged:F,distinct_patient_field_values:U.size,distinct_subjects_with_edf_bdf:re.size,distinct_patient_code_subfield:P.size,distinct_patient_name_subfield:O.size,distinct_patient_birth_subfield:H.size,distinct_patient_field_values_in_flagged_files:B.size,findings_by_kind:Lwe(l),edf_bdf_files_by_kind:M,unscreened_formats:d.unscreened,side_reads_failed:Fc,finding_fields:[...new Set(wr.map((Ce)=>`${Ce.kind}:${Ce.field}`))].sort()}}Fp();fn();Hf();wp();var Wp="--acknowledge-identifier-preflight",EIt=16,SIt="local:";function Pq(e){let t=[],n=new Map,r=0,o=[""];while(o.length>0){let s=o.pop(),i;try{i=vIt(s===""?e:tCe(e,s),{withFileTypes:!0})}catch{r++;continue}i.sort((c,l)=>c.name<l.name?-1:c.name>l.name?1:0);let a=[];for(let c of i){let l=c.name;if(s===""&&(l===".git"||l===".nemar"))continue;let d=s===""?l:`${s}/${l}`;if(c.isDirectory()){a.push(d);continue}if(l===".gitattributes")continue;let f=`${SIt}${t.length}`,p=tCe(e,d),m=null;try{let h=nCe(p);if(h.isFile())m=h.size,n.set(f,p);else if(h.isDirectory()&&!xIt(p).isSymbolicLink()){a.push(d);continue}}catch{}t.push({path:d,size:m,url:f})}for(let c=a.length-1;c>=0;c--)o.push(a[c])}return{entries:t,readable:n,unlisted:r}}function $It(e,t=new Map){return async(n,r,o)=>{let s=e.get(n.url);if(s===void 0)throw new Zn("unreadable-entry");let i=t.get(s),a;try{a=await kIt(s,"r")}catch{throw new Zn("unreadable-entry")}try{let c=n.size===null?r:Math.min(r,n.size),l=new Uint8Array(c),d=0;while(d<c){let{bytesRead:f}=await a.read(l,d,c-d,d);if(f===0)break;d+=f}if(d<o.minBytes)throw new Zn("short-body");if(i)l.set(i.subarray(0,Math.min(d,i.length)),0);return l.subarray(0,d)}catch(c){if(c instanceof Zn)throw c;throw new Zn("unreadable-entry")}finally{await a.close().catch(()=>{return})}}}async function rCe(e,t){let n=Pq(e),r=Y1e({fileConcurrency:EIt,workerConcurrency:1,limits:{...J1e},readEntryHead:$It(n.readable,t),githubToken:async()=>null,readVersionManifest:async()=>{throw new Zn("unreadable-entry")},sleep:async()=>{return}}),o=await eCe(r,"local",null,n.entries,"clone",{extraIncompleteReasons:n.unlisted>0?["tree-truncated"]:[]}),s={scanned_at:o.scanned_at,status:o.status,incomplete:o.incomplete,incomplete_reasons:o.incomplete_reasons,files:o.files,findings_by_kind:o.findings_by_kind,edf_bdf_files_flagged:o.edf_bdf_files_flagged,unscreened_formats:o.unscreened_formats,read_failures:o.read_failures};return Oj(NEe(FEe(s)))}function mC(e){if(Jd(e.status)!=="acknowledge")return[];let t=new Set([e.status]);if(e.incomplete&&e.status!=="unchecked")t.add("unchecked");let n=Object.values(e.unscreened_formats).reduce((o,s)=>o+s,0),r=e.status==="not-screened"||e.status==="clean-edf-only-others-unscreened";if(n>0&&!r)t.add("not-screened");return[...t].sort()}var oCe=(e,t)=>e.length===t.length&&e.every((n,r)=>n===t[r]);function sCe(e,t){let n=e.split(",").map((o)=>o.trim()).filter((o)=>o!==""),r=JR;if(n.length===0||!n.every((o)=>r.includes(o)))throw new Us(`Allowed verdicts are ${r.join(", ")}. Direct identifiers cannot be acknowledged.`);return[...t??[],...n]}function DIt(e,t){let n=Jd(e.status);if(n==="clear")return{action:"proceed",acknowledgedVia:null};if(n!=="acknowledge")return{action:"refuse"};if(t.acknowledge!==void 0){let r=[...new Set(t.acknowledge)].sort();return oCe(r,mC(e))?{action:"proceed",acknowledgedVia:"flag"}:{action:"stop",why:"acknowledgment-mismatch"}}if(t.dryRun)return{action:"preview"};if(t.no)return{action:"stop",why:"declined"};if(t.isTty)return{action:"prompt"};return{action:"stop",why:"acknowledgment-required"}}var RIt={review:"the scanner found something a person should look at (the kinds are listed above)",unchecked:"the scanner could not read everything it should have (see Incomplete above)","not-screened":"some recordings are in formats the scanner cannot read, so their headers were not checked","clean-edf-only-others-unscreened":"the EDF/BDF headers are clean, but other recordings are in formats the scanner cannot read"},Oq=(e)=>`${Wp} ${e.join(",")}`;function Tq(e){console.log(u.yellow("  This does not stop an upload, but it needs your explicit acknowledgment of:"));for(let t of e)console.log(u.yellow(`    ${t}: ${RIt[t]??"not clean"}.`));console.log(u.dim("  Your acknowledgment is recorded with your deposit attestation. NEMAR screens the dataset again when you request publication, and an administrator decides then."))}function iCe(){console.log(),console.log(u.red("  Upload refused: the preflight found direct identifiers (a name, a birth date finer than the year, a record number, an age over 89, or an identifying column or key). Nothing was sent.")),console.log(u.red("  Remove them from the files (for EDF/BDF, the patient and recording fields of the header) and run the upload again.")),console.log(u.dim(`  There is no override, and ${Wp} does not apply. If this is a false positive, please report it, so the scanner is fixed for every dataset. Terms: ${nC}`))}function aCe(e){if(e instanceof GR)return`report-${e.message}`;let t=e instanceof Error&&/^[A-Za-z]{1,40}$/.test(e.name)?e.name:"unknown",n=e?.code;return typeof n==="string"&&/^E[A-Z0-9]{1,20}$/.test(n)?`${t} ${n}`:t}function cCe(e,t){e.fail("Identifier preflight: DID NOT FINISH"),console.log(u.red(`  The preflight could not produce a verdict, so nothing was uploaded (${aCe(t)}).`)),console.log(u.dim("  Please report this: https://github.com/nemarOrg/nemar-cli/issues"))}function pC(e,t,n=""){let r=Tj(t,null),o=`${r.headline}${n}`;if(r.tone==="ok")e.succeed(o);else if(r.tone==="stop")e.fail(o);else e.warn(o);for(let s of Oc({state:t.status,...r},2).slice(1))console.log(s)}function lCe(e,t){try{return mn(MEe({version:zR,scanner:`nemar-cli@${Ds}`,scan:e,acknowledged_via:t}))}catch(n){return console.log(u.red(`  The preflight's record did not fit the report contract (${aCe(n)}), so nothing was uploaded.`)),Ne}}async function uCe(e,t,n=process.stdin.isTTY===!0,r){let o=D("Screening for identifiers on this machine (nothing is sent)...").start(),s=!1;try{s=nCe(e).isDirectory()}catch{s=!1}if(!s)return o.fail("Identifier preflight: the dataset path is not a directory"),Ne;let i=new Map((r?.items??[]).map((p)=>[p.path,p.after])),a;try{a=await rCe(e,i)}catch(p){return cCe(o,p),Ne}pC(o,a);let c=mC(a),l=DIt(a,{acknowledge:t.acknowledgeIdentifierPreflight,dryRun:t.dryRun,no:t.no,isTty:n}),d;switch(l.action){case"proceed":if(l.acknowledgedVia==="flag")console.log(u.dim(`  Acknowledged with ${Oq(c)}.`));else if(t.acknowledgeIdentifierPreflight!==void 0)console.log(u.dim(`  Nothing to acknowledge; ${Wp} was not needed.`));d=l.acknowledgedVia;break;case"preview":return Tq(c),console.log(u.yellow(`  A real upload stops here until you acknowledge it: answer the prompt, or pass ${Oq(c)}.`)),console.log(),mn(null);case"prompt":{Tq(c);let p=!1,m=()=>{console.log(u.red(`
   Upload cancelled. Nothing was sent.`)),ce(),process.exit(130)};process.once("SIGINT",m);let h=setInterval(()=>{return},1000);try{({acknowledged:p}=await Ae.prompt([{type:"confirm",name:"acknowledged",message:"Upload anyway?",default:!1}]))}catch{p=!1}finally{clearInterval(h),process.off("SIGINT",m)}if(p!==!0)return console.log(u.red("  Upload cancelled. Nothing was sent.")),ce(),Ne;console.log(u.dim("  Acknowledged at the prompt.")),d="prompt";break}case"refuse":return iCe(),ce(),Ne;case"stop":if(l.why==="acknowledgment-mismatch")console.log(u.red(`  ${Wp} must name exactly what was found, which is: ${c.join(",")}. It does not acknowledge this scan. Nothing was sent.`));else Tq(c),console.log(u.red(l.why==="declined"?"  Declined (--no). Nothing was sent.":`  No terminal to ask at: run interactively, or pass ${Oq(c)}. --yes does not acknowledge a finding. Nothing was sent.`));return ce(),Ne}let f=lCe(a,d);if(f.status==="ok")console.log();return f}async function dCe(e,t){let n=D("Screening again, right before anything is sent...").start(),r;try{r=await rCe(e)}catch(a){return cCe(n,a),Ne}let o=Jd(r.status);if(o!=="clear"&&o!=="acknowledge")return pC(n,r),iCe(),ce(),Ne;let s=mC(t.scan),i=mC(r);if(!oCe(s,i))return pC(n,r),console.log(u.red(`  The files changed since the preflight, and so did what it found (acknowledged: ${s.join(",")||"nothing"}; now: ${i.join(",")}). Nothing was sent. Run the upload again.`)),ce(),Ne;if(WR(r.findings_by_kind)!==WR(t.scan.findings_by_kind))pC(n,r," (screened again)");else n.succeed(`${Tj(r,null).headline} (screened again)`);return lCe(r,t.acknowledged_via)}var UIt=/\.(edf|bdf)$/i,yCe=ia(".nemar","date-normalization"),HIt=()=>({tracked:0,"nested-repository":0,ignored:0,"tracking-unknown":0,link:0,"not-writable":0,"other-filesystem":0,unverified:0});function VIt(){return{items:[],left:HIt()}}function zIt(e){if(process.env.GIT_DIR||process.env.GIT_WORK_TREE)return!0;for(let t=e;;t=hC(t)){if(mCe(ia(t,".git")))return!0;if(hC(t)===t)return!1}}var Fq=(e)=>e.normalize("NFC").toLowerCase();async function Iq(e,t,n){try{let r=await R(e,{cwd:t,...n===void 0?{}:{stdin:n}});if(!(r.exitCode===0||e.includes("check-ignore")&&r.exitCode===1))return null;return new Set(r.stdout.split("\x00").filter(Boolean).map(Fq))}catch{return null}}async function GIt(e,t){let n=`${t.join("\x00")}\x00`;if(zIt(e)){let o=await Iq(["git","ls-files","-z"],e),s=await Iq(["git","check-ignore","-z","--stdin"],e,n);return o&&s?{tracked:o,ignored:s}:null}let r=null;try{if(r=NIt(ia(BIt(),"nemar-ignore-")),(await R(["git","init","-q","--bare",r],{cwd:e})).exitCode!==0)return null;let s=await Iq(["git",`--git-dir=${r}`,`--work-tree=${e}`,"check-ignore","--no-index","-z","--stdin"],e,n);return s?{tracked:new Set,ignored:s}:null}catch{return null}finally{if(r!==null)try{Bq(r,{recursive:!0,force:!0})}catch{}}}function Mq(e){let t;try{t=qq(e,"r")}catch{return null}try{let n=new Uint8Array(kt),r=0;while(r<kt){let o=FIt(t,n,r,kt-r,r);if(o===0)break;r+=o}return r===kt?n:null}catch{return null}finally{try{Lq(t)}catch{}}}var fCe=(e,t)=>e!==null&&e.length===t.length&&e.every((n,r)=>n===t[r]);function pCe(e){try{return AIt(e,Nq.W_OK),!0}catch{return!1}}function WIt(e,t,n){let r=t.split("/").slice(0,-1);for(let o=1;o<=r.length;o++){let s=r.slice(0,o).join("/"),i=n.get(s);if(i===void 0){i=mCe(ia(e,s,".git"));try{i||=Ic(ia(e,s,".git")).isSymbolicLink()}catch{}n.set(s,i)}if(i)return!0}return!1}async function bCe(e){let t=VIt();try{await KIt(e,t)}catch(n){$n(`date normalization: planning stopped (${n instanceof Error?n.name:"unknown"})`)}return t}async function KIt(e,t){let n=gCe(e).dev,r=Pq(e),o=[];for(let c of r.entries){if(!UIt.test(c.path))continue;let l=r.readable.get(c.url);if(l===void 0)continue;let d=Mq(l);if(d===null)continue;try{let f=H6(d);if(f.changed)o.push({path:l,rel:c.path,before:d,after:f.header})}catch(f){if(f instanceof Nd)continue;t.left.unverified++,$n(`date normalization: a header was not planned (${f instanceof Error?f.name:"unknown"})`)}}if(o.length===0)return;let s=await GIt(e,o.map((c)=>c.rel)),i=new Map,a=typeof process.getuid==="function"?process.getuid():null;for(let c of o){if(s===null){t.left["tracking-unknown"]++;continue}if(s.tracked.has(Fq(c.rel))){t.left.tracked++;continue}if(WIt(e,c.rel,i)){t.left["nested-repository"]++;continue}if(s.ignored.has(Fq(c.rel))){t.left.ignored++;continue}let l;try{l=Ic(c.path)}catch{continue}if(l.isSymbolicLink()){t.left.link++;continue}if(!l.isFile())continue;if(l.dev!==n){t.left["other-filesystem"]++;continue}if(a!==null&&l.uid!==a||(l.mode&128)===0||!pCe(c.path)||!pCe(hC(c.path))){t.left["not-writable"]++;continue}t.items.push({path:c.path,rel:c.rel,dev:l.dev,ino:l.ino,size:l.size,mtimeMs:l.mtimeMs,mode:l.mode,gid:l.gid,before:c.before,after:c.after})}}var JIt=/^\d+-[0-9a-f]{16}$/;function YIt(e){try{let t=ia(e,yCe);for(let n of[ia(e,".nemar"),t])if(!Ic(n).isDirectory())return;for(let n of MIt(t))if(JIt.test(n))Bq(ia(t,n),{force:!0})}catch{}}function jq(e){for(let t of e)try{LIt(t)}catch{}}function XIt(e,t){let n=[],r=ia(e,yCe);try{for(let o of[ia(e,".nemar"),r]){let s;try{s=Ic(o)}catch{IIt(o),n.push(o),s=Ic(o)}if(!s.isDirectory()||s.dev!==t)return jq([...n].reverse()),null}return{dir:r,made:n}}catch{return jq([...n].reverse()),null}}function QIt(e){try{let t=qq(e,"r");try{hCe(t)}finally{Lq(t)}}catch{}}function ZIt(e,t){let n=null;try{let r=(s)=>s.isFile()&&s.dev===e.dev&&s.ino===e.ino&&s.size===e.size&&s.mtimeMs===e.mtimeMs;if(!r(Ic(e.path))||!fCe(Mq(e.path),e.before))return null;if(n=ia(t,`${process.pid}-${CIt(8).toString("hex")}`),PIt(e.path,n,Nq.COPYFILE_EXCL|Nq.COPYFILE_FICLONE),Ic(n).gid!==e.gid)TIt(n,-1,e.gid);OIt(n,e.mode&4095);let o=qq(n,"r+");try{if(qIt(o,e.after,0,kt,0)!==kt)return null;hCe(o)}finally{Lq(o)}if(Ic(n).size!==e.size||!fCe(Mq(n),e.after))return null;if(!r(Ic(e.path)))return null;return jIt(n,e.path),n=null,QIt(hC(e.path)),Ic(e.path).mtimeMs}catch(r){return $n(`date normalization: a header was not set (${r instanceof Error?r.name:"unknown"})`),null}finally{if(n!==null)try{Bq(n,{force:!0})}catch{}}}function wCe(e,t){let n={set:0,left:0,mtimes:new Map};if(YIt(e),t.items.length===0)return n;let r=null;try{r=XIt(e,gCe(e).dev)}catch{}if(r===null)return n.left=t.items.length,$n("date normalization: no work directory, nothing set"),n;try{for(let o of t.items){let s=ZIt(o,r.dir);if(s===null){n.left++;continue}n.set++,n.mtimes.set(o.rel,s)}}finally{jq([r.dir,...[...r.made].reverse().filter((o)=>o!==r.dir)])}if(n.set>0)console.log(u.dim(`  ${TEe(n.set)}`));return n}He();Qs();uo();import{existsSync as J_,mkdirSync as bNt,readFileSync as Y_,writeFileSync as jCe}from"fs";import{basename as wNt,resolve as Kp}from"path";sc();ze();jr();Qs();import{existsSync as gC,readFileSync as Uq,writeFileSync as xCe}from"fs";import{resolve as yC}from"path";var Hq=[{spdxId:"CC0-1.0",name:"CC0 1.0 Universal (Public Domain)",description:"No rights reserved. Anyone can use the data for any purpose.",url:"https://creativecommons.org/publicdomain/zero/1.0/",allowsResearchUse:!0},{spdxId:"PDDL-1.0",name:"Open Data Commons Public Domain Dedication and License (PDDL)",description:"Database-specific public domain dedication.",url:"https://opendatacommons.org/licenses/pddl/1-0/",allowsResearchUse:!0},{spdxId:"CC-BY-4.0",name:"Creative Commons Attribution 4.0 International",description:"Attribution required. Free for any use including commercial.",url:"https://creativecommons.org/licenses/by/4.0/",allowsResearchUse:!0},{spdxId:"CC-BY-SA-4.0",name:"Creative Commons Attribution-ShareAlike 4.0 International",description:"Attribution + share-alike required. Derivatives must use same license.",url:"https://creativecommons.org/licenses/by-sa/4.0/",allowsResearchUse:!0},{spdxId:"CC-BY-NC-4.0",name:"Creative Commons Attribution-NonCommercial 4.0 International",description:"Attribution required. Non-commercial use only.",url:"https://creativecommons.org/licenses/by-nc/4.0/",allowsResearchUse:!0},{spdxId:"CC-BY-NC-SA-4.0",name:"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International",description:"Attribution + non-commercial + share-alike required.",url:"https://creativecommons.org/licenses/by-nc-sa/4.0/",allowsResearchUse:!0},{spdxId:"ODC-By-1.0",name:"Open Data Commons Attribution License v1.0",description:"Database-specific attribution license.",url:"https://opendatacommons.org/licenses/by/1.0/",allowsResearchUse:!0},{spdxId:"ODbL-1.0",name:"Open Data Commons Open Database License v1.0",description:"Database attribution + share-alike. Produced works can be any license.",url:"https://opendatacommons.org/licenses/odbl/1.0/",allowsResearchUse:!0}],_Ce=new Set(["CC0-1.0","CC-BY-4.0","CC-BY-SA-4.0","CC-BY-NC-4.0","CC-BY-NC-SA-4.0","CC-BY-ND-4.0","CC-BY-NC-ND-4.0","PDDL-1.0","ODC-By-1.0","ODbL-1.0","MIT","Apache-2.0","GPL-2.0-only","GPL-2.0-or-later","GPL-3.0-only","GPL-3.0-or-later","LGPL-2.1-only","LGPL-2.1-or-later","LGPL-3.0-only","LGPL-3.0-or-later","BSD-2-Clause","BSD-3-Clause","ISC","Unlicense"]);function vCe(e){let t=yC(e,"dataset_description.json");if(gC(t))try{let r=JSON.parse(Uq(t,"utf-8"));if(typeof r.License==="string"&&r.License.trim())return{spdxId:r.License.trim(),source:"dataset_description"}}catch(r){if(r instanceof SyntaxError)console.warn(`  Warning: dataset_description.json has invalid JSON: ${r.message}`);else console.warn(`  Warning: Could not read dataset_description.json: ${r instanceof Error?r.message:String(r)}`)}let n=["LICENSE","LICENSE.txt","LICENSE.md","LICENCE","LICENCE.txt"];for(let r of n){let o=yC(e,r);if(gC(o)){try{let s=Uq(o,"utf-8").toLowerCase();if(s.includes("cc0")||s.includes("public domain dedication"))return{spdxId:"CC0-1.0",source:"license_file"};if(s.includes("attribution-noncommercial-sharealike"))return{spdxId:"CC-BY-NC-SA-4.0",source:"license_file"};if(s.includes("attribution-noncommercial"))return{spdxId:"CC-BY-NC-4.0",source:"license_file"};if(s.includes("attribution-sharealike"))return{spdxId:"CC-BY-SA-4.0",source:"license_file"};if(s.includes("creativecommons")&&s.includes("attribution"))return{spdxId:"CC-BY-4.0",source:"license_file"};if(s.includes("open database license")||s.includes("odbl"))return{spdxId:"ODbL-1.0",source:"license_file"};if(s.includes("open data commons")&&s.includes("attribution"))return{spdxId:"ODC-By-1.0",source:"license_file"};if(s.includes("public domain dedication and license")||s.includes("pddl"))return{spdxId:"PDDL-1.0",source:"license_file"};if(s.includes("permission is hereby granted, free of charge")||s.includes("mit license"))return{spdxId:"MIT",source:"license_file"}}catch(s){console.warn(`  Warning: Could not read ${r}: ${s instanceof Error?s.message:String(s)}`)}return{spdxId:void 0,source:"license_file"}}}return{spdxId:void 0,source:"none"}}async function Vq(e){let t=Hq.map((o)=>({name:`${o.spdxId.padEnd(22)} ${o.description}`,value:o.spdxId,short:o.spdxId}));t.push({name:"Other (enter SPDX ID manually)",value:"__custom__",short:"Custom"});let n=e?Hq.find((o)=>o.spdxId===e)?.spdxId:void 0,{selected:r}=await Ae.prompt([{type:"list",name:"selected",message:"Select a license for this dataset:",choices:t,default:n,pageSize:t.length}]);if(r==="__custom__"){let{customId:o}=await Ae.prompt([{type:"input",name:"customId",message:"Enter SPDX license ID (e.g., MIT, Apache-2.0):",validate:(s)=>{if(!s.trim())return"License ID is required";return!0}}]);return o.trim()}return r}function kCe(e){let t=e.toUpperCase().replace(/\s+/g,"-");if(_Ce.has(e))return!0;for(let n of _Ce)if(n.toUpperCase()===t)return!0;return!1}function eNt(e){let t=Hq.find((n)=>n.spdxId===e);if(t)return`${t.name}

package/package.json CHANGED Viewed

@@ -1,7 +1,7 @@
 {
   "name": "nemar-cli",
   "packageManager": "bun@1.4.3",
-  "version": "0.10.27-dev.4112",
+  "version": "0.10.27",
   "description": "CLI for NEMAR (Neuroelectromagnetic Data Archive and Tools Resource) dataset management",
   "type": "module",
   "main": "dist/index.js",