nebula-notebook 0.1.1 → 0.2.1

package/dist/assets/viewlist-uomDf7I7.js

@@ -0,0 +1 @@
+class c{constructor(e,s,h){this.initialize(e,s,h)}initialize(e,s,h){this._handler_context=h||this,this._models=[],this.views=[],this._create_view=e,this._remove_view=s||function(t){t.remove()}}update(e,s,h,t){const v=h||this._remove_view,n=s||this._create_view;t=t||this._handler_context;let i=0;for(;i<e.length&&!(i>=this._models.length||e[i]!==this._models[i]);i++);const r=i,o=this.views.splice(r,this.views.length-r);for(let l=0;l<o.length;l++)o[l].then(function(_){v.call(t,_)});for(;i<e.length;i++)this.views.push(Promise.resolve(n.call(t,e[i],i)));return this._models=e.slice(),Promise.all(this.views)}remove(){return Promise.all(this.views).then(e=>{e.forEach(s=>this._remove_view.call(this._handler_context,s)),this.views=[],this._models=[]})}dispose(){this.views=null,this._models=null}}export{c as V};

package/dist/assets/widgets-X7J3NxEn.css

@@ -0,0 +1 @@
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package/dist/index.html

@@ -64,8 +64,8 @@
   }
 }
 </script>
-  <script type="module" crossorigin src="/assets/index-BvrHu37J.js"></script>
-  <link rel="stylesheet" crossorigin href="/assets/index-Dfj_xsKU.css">
+  <script type="module" crossorigin src="/assets/index-DK4nS74r.js"></script>
+  <link rel="stylesheet" crossorigin href="/assets/index-DzjpmUak.css">
 </head>
   <body class="bg-slate-50 text-slate-900 antialiased">
     <div id="root"></div>

package/node-server/dist/auth/auth-middleware.js

@@ -45,6 +45,7 @@ exports.persistSessionToken = persistSessionToken;
 exports.authMiddleware = authMiddleware;
 exports.authWebSocketMiddleware = authWebSocketMiddleware;
 const url_1 = require("url");
+const crypto_1 = require("crypto");
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const os = __importStar(require("os"));
@@ -132,13 +133,28 @@ function extractClusterSecret(req) {
     }
     return value;
 }
+function secretsEqual(a, b) {
+    const ab = Buffer.from(a);
+    const bb = Buffer.from(b);
+    if (ab.length !== bb.length)
+        return false;
+    return (0, crypto_1.timingSafeEqual)(ab, bb);
+}
+/** Loopback = same machine (or arrived through an ssh tunnel, which
+ *  terminates on this machine) — the trust boundary for the on-disk
+ *  session-token fallback used by MCP/CLI tools. */
+function isLoopback(addr) {
+    if (!addr)
+        return false;
+    return addr === '127.0.0.1' || addr === '::1' || addr === '::ffff:127.0.0.1' || addr.startsWith('127.');
+}
 function hasValidClusterSecret(req) {
     const clusterSecret = getClusterSecret();
     if (!clusterSecret) {
         return false;
     }
     const provided = extractClusterSecret(req);
-    return Boolean(provided && provided === clusterSecret);
+    return Boolean(provided && secretsEqual(provided, clusterSecret));
 }
 function isClusterRoute(pathname) {
     return pathname.startsWith('/api/servers') || pathname.startsWith('/servers');
@@ -205,8 +221,10 @@ async function authMiddleware(request, reply) {
     let token = extractToken(request);
     // Fallback: if no token in request, check the persisted session token file.
     // This allows MCP servers and CLI tools to piggyback on the browser's auth
-    // without needing their own TOTP flow.
-    if (!token) {
+    // without needing their own TOTP flow. Loopback-only: those tools run on
+    // this machine (or reach it through an ssh tunnel, which lands on
+    // loopback); a token-less request from the network gets no free ride.
+    if (!token && isLoopback(request.ip)) {
         token = readSessionToken();
     }
     if (!token) {
@@ -245,7 +263,7 @@ function authWebSocketMiddleware(request) {
             return false;
         }
         const provided = extractClusterSecret(request);
-        if (provided !== clusterSecret) {
+        if (!provided || !secretsEqual(provided, clusterSecret)) {
             console.log('[Auth] WebSocket rejected - invalid cluster secret');
             return false;
         }

package/node-server/dist/auth/auth-service.js

@@ -48,8 +48,8 @@ const os = __importStar(require("os"));
 const otplib_1 = require("otplib");
 const jwt = __importStar(require("jsonwebtoken"));
 const qrcode = __importStar(require("qrcode-terminal"));
-// Config file location
-const NEBULA_DIR = path.join(os.homedir(), '.nebula');
+// Config file location (env override is a test seam)
+const NEBULA_DIR = process.env.NEBULA_AUTH_DIR || path.join(os.homedir(), '.nebula');
 const AUTH_CONFIG_FILE = path.join(NEBULA_DIR, 'auth.json');
 // JWT settings
 const JWT_SECRET_LENGTH = 64;
@@ -58,8 +58,10 @@ const LONG_SESSION_DAYS = 30;
 // Rate limiting: max 5 attempts per 30 seconds
 const MAX_ATTEMPTS = 5;
 const WINDOW_MS = 30000;
-// Temporary debugging setting: accept up to five TOTP steps before and after
-// current time while investigating clock skew and login flow issues.
+// DELIBERATELY wide (±5 steps = ±2.5min): cluster login nodes have shipped
+// with minutes of clock skew and a tight window locks the user out entirely.
+// Availability beats the marginal brute-force surface here — do not "fix"
+// this back to 1 without confirming server NTP is trustworthy everywhere.
 const TOTP_WINDOW_STEPS = 5;
 otplib_1.authenticator.options = {
     ...otplib_1.authenticator.options,
@@ -105,6 +107,15 @@ class AuthService {
             }
             catch (err) {
                 console.error('[Auth] Failed to load auth config:', err);
+                // NEVER silently overwrite an existing-but-unreadable config: it may
+                // hold the user's only copy of their TOTP secret (e.g. truncated by a
+                // quota-full write). Preserve it for recovery before regenerating.
+                try {
+                    const backup = `${AUTH_CONFIG_FILE}.corrupt-${Date.now()}`;
+                    fs.copyFileSync(AUTH_CONFIG_FILE, backup);
+                    console.error(`[Auth] Unreadable auth config backed up to ${backup} — regenerating fresh secrets.`);
+                }
+                catch { /* backup is best-effort */ }
             }
         }
         // No config exists - generate new secrets
@@ -137,9 +148,28 @@ class AuthService {
     saveConfig() {
         if (!this.config)
             return;
-        fs.writeFileSync(AUTH_CONFIG_FILE, JSON.stringify(this.config, null, 2), {
-            mode: 0o600, // Owner read/write only
-        });
+        // Atomic write (tmp + rename): a plain writeFileSync truncates BEFORE
+        // writing, so a quota-full/crashed write leaves an empty auth.json and
+        // the TOTP secret then exists only in this process's memory — exactly the
+        // failure that forces users to re-enroll after the next restart. With
+        // rename, a failed write leaves the previous file untouched.
+        const tmp = `${AUTH_CONFIG_FILE}.${process.pid}.tmp`;
+        try {
+            fs.writeFileSync(tmp, JSON.stringify(this.config, null, 2), { mode: 0o600 });
+            fs.renameSync(tmp, AUTH_CONFIG_FILE);
+        }
+        catch (err) {
+            try {
+                fs.unlinkSync(tmp);
+            }
+            catch { /* nothing partial to clean */ }
+            // Loud, specific failure: the server keeps working from memory, but the
+            // secret will NOT survive a restart — the user must be able to see why.
+            console.error(`[Auth] FAILED to persist auth config to ${AUTH_CONFIG_FILE} — ` +
+                `2FA secrets exist ONLY in memory and will be lost on restart. ` +
+                `Check disk quota/permissions. Error:`, err);
+            throw err;
+        }
     }
     /**
      * Print QR code and manual key to terminal for initial setup

package/node-server/dist/cluster/client-registration.d.ts

@@ -10,10 +10,21 @@ declare class ClientRegistration {
     private registrationRetryTimeout;
     private registered;
     private serverId;
+    /**
+     * The local IP on the interface that ROUTES TO the main server, learned by
+     * opening a TCP connection to it. Registering os.hostname() broke on
+     * clusters where compute nodes report an FQDN the controller cannot
+     * resolve (cri22cn416.cri.uchicago.edu vs the resolvable cri22cn416):
+     * every controller→node fetch died as 500 "fetch failed" while heartbeats
+     * (outbound) kept the allocation looking healthy. An IP needs no DNS at
+     * all, and the interface that reaches the controller is the one the
+     * controller can reach back on.
+     */
+    private routableLocalAddress;
     /**
      * Initialize client registration from environment variables
      */
-    initFromEnv(localPort: number): void;
+    initFromEnv(localPort: number): Promise<void>;
     /**
      * Register with the main server
      */

package/node-server/dist/cluster/client-registration.js

@@ -43,6 +43,7 @@ exports.clientRegistration = void 0;
 const server_registry_1 = require("./server-registry");
 const resource_service_1 = require("../resources/resource-service");
 const os = __importStar(require("os"));
+const net = __importStar(require("net"));
 const HEARTBEAT_INTERVAL_MS = 30_000; // 30 seconds
 const REGISTRATION_RETRY_MS = 10_000; // 10 seconds retry on failure
 class ClientRegistration {
@@ -51,24 +52,58 @@ class ClientRegistration {
     registrationRetryTimeout = null;
     registered = false;
     serverId = null;
+    /**
+     * The local IP on the interface that ROUTES TO the main server, learned by
+     * opening a TCP connection to it. Registering os.hostname() broke on
+     * clusters where compute nodes report an FQDN the controller cannot
+     * resolve (cri22cn416.cri.uchicago.edu vs the resolvable cri22cn416):
+     * every controller→node fetch died as 500 "fetch failed" while heartbeats
+     * (outbound) kept the allocation looking healthy. An IP needs no DNS at
+     * all, and the interface that reaches the controller is the one the
+     * controller can reach back on.
+     */
+    routableLocalAddress(mainServerUrl) {
+        return new Promise((resolve) => {
+            try {
+                const u = new URL(mainServerUrl);
+                const port = Number(u.port) || (u.protocol === 'https:' ? 443 : 80);
+                const sock = net.connect({ host: u.hostname, port, timeout: 3000 }, () => {
+                    const addr = sock.localAddress || null;
+                    sock.destroy();
+                    resolve(addr);
+                });
+                sock.on('error', () => resolve(null));
+                sock.on('timeout', () => { sock.destroy(); resolve(null); });
+            }
+            catch {
+                resolve(null);
+            }
+        });
+    }
     /**
      * Initialize client registration from environment variables
      */
-    initFromEnv(localPort) {
+    async initFromEnv(localPort) {
         const mainServerUrl = process.env.NEBULA_MAIN_SERVER;
         if (!mainServerUrl) {
             console.log('[ClientRegistration] No NEBULA_MAIN_SERVER set, running as standalone');
             return;
         }
-        const localHost = process.env.NEBULA_HOST || os.hostname();
+        // Explicit override → routable IP → hostname (last resort; may be an
+        // FQDN the controller can't resolve).
+        const localHost = process.env.NEBULA_HOST
+            || (await this.routableLocalAddress(mainServerUrl))
+            || os.hostname();
         const serverName = process.env.NEBULA_SERVER_NAME || os.hostname();
         const secret = process.env.NEBULA_CLUSTER_SECRET;
+        const allocationToken = process.env.NEBULA_ALLOCATION_TOKEN;
         this.config = {
             mainServerUrl: mainServerUrl.replace(/\/$/, ''), // Remove trailing slash
             localHost,
             localPort,
             serverName,
             secret,
+            allocationToken,
         };
         // Set local server ID
         const serverId = `${localHost}:${localPort}`;
@@ -101,6 +136,7 @@ class ClientRegistration {
                     name: this.config.serverName,
                     secret: this.config.secret,
                     resources, // Include resources in registration
+                    allocationToken: this.config.allocationToken,
                 }),
             });
             if (!response.ok) {

package/node-server/dist/cluster/kernel-proxy.js

@@ -158,9 +158,17 @@ async function getRemoteKernelStatus(sessionId) {
     if (!server) {
         throw new Error(`Server not found: ${serverId}`);
     }
-    const response = await fetch(`${server.url}/api/kernels/${remoteSessionId}/status`, {
-        headers: { ...getClusterHeaders() },
-    });
+    let response;
+    try {
+        response = await fetch(`${server.url}/api/kernels/${remoteSessionId}/status`, {
+            headers: { ...getClusterHeaders() },
+        });
+    }
+    catch (err) {
+        // Connection-level failure (refused/reset) — the node may be gone.
+        server_registry_1.serverRegistry.reportUnreachable(serverId);
+        throw err;
+    }
     if (!response.ok) {
         const error = await response.json().catch(() => ({ detail: 'Unknown error' }));
         throw new Error(error.detail || 'Failed to get kernel status');
@@ -291,6 +299,28 @@ function createWebSocketProxy(sessionId, clientWs) {
     const remoteWs = new ws_1.WebSocket(wsUrl, {
         headers: getClusterHeaders(),
     });
+    // The client (UI) sends its messages as soon as *its* socket is open — which
+    // is before this remote socket finishes connecting. Those early messages
+    // (notably the one-time `sync_outputs` that subscribes to the kernel's output
+    // stream, and the first `execute`) would otherwise be silently dropped,
+    // leaving the cell running with no output. Buffer them and flush on open.
+    const pending = [];
+    const sendToRemote = (data, isBinary) => {
+        if (remoteWs.readyState === ws_1.WebSocket.OPEN) {
+            remoteWs.send(isBinary ? data : (typeof data === 'string' ? data : data.toString()));
+        }
+        else {
+            pending.push({ data, isBinary });
+        }
+    };
+    remoteWs.on('open', () => {
+        for (const { data, isBinary } of pending) {
+            if (remoteWs.readyState === ws_1.WebSocket.OPEN) {
+                remoteWs.send(isBinary ? data : (typeof data === 'string' ? data : data.toString()));
+            }
+        }
+        pending.length = 0;
+    });
     // Forward messages from remote to client
     remoteWs.on('message', (data, isBinary) => {
         if (clientWs.readyState !== ws_1.WebSocket.OPEN) {
@@ -302,20 +332,18 @@ function createWebSocketProxy(sessionId, clientWs) {
         }
         clientWs.send(typeof data === 'string' ? data : data.toString());
     });
-    // Forward messages from client to remote
+    // Forward messages from client to remote (buffered until remote is open)
     clientWs.on('message', (data, isBinary) => {
-        if (remoteWs.readyState !== ws_1.WebSocket.OPEN) {
-            return;
-        }
-        if (isBinary) {
-            remoteWs.send(data);
-            return;
-        }
-        remoteWs.send(typeof data === 'string' ? data : data.toString());
+        sendToRemote(data, isBinary);
     });
     // Handle remote close
     remoteWs.on('close', () => {
         console.log(`[KernelProxy] Remote WebSocket closed for ${sessionId}`);
+        // The kernel channel dropping is the earliest signal a compute node
+        // died (walltime, scancel, crash) — let the allocation layer verify.
+        const { serverId: sid } = parseSessionId(sessionId);
+        if (sid)
+            server_registry_1.serverRegistry.reportUnreachable(sid);
         if (clientWs.readyState === ws_1.WebSocket.OPEN) {
             clientWs.close();
         }
@@ -330,6 +358,9 @@ function createWebSocketProxy(sessionId, clientWs) {
     // Handle errors
     remoteWs.on('error', (err) => {
         console.error(`[KernelProxy] Remote WebSocket error for ${sessionId}:`, err);
+        const { serverId: sid } = parseSessionId(sessionId);
+        if (sid)
+            server_registry_1.serverRegistry.reportUnreachable(sid);
     });
     // Track the proxy
     const session = proxiedSessions.get(sessionId);

package/node-server/dist/cluster/server-registry.d.ts

@@ -17,6 +17,8 @@ export interface PeerServer {
     status: 'online' | 'offline' | 'unknown';
     kernelspecs?: string[];
     resources?: ServerResources;
+    allocationToken?: string;
+    allocationId?: string;
 }
 export interface RegisterRequest {
     host: string;
@@ -24,6 +26,7 @@ export interface RegisterRequest {
     name?: string;
     secret?: string;
     resources?: ServerResources;
+    allocationToken?: string;
 }
 declare class ServerRegistry {
     private servers;
@@ -72,10 +75,24 @@ declare class ServerRegistry {
      * Get all registered peer servers
      */
     getAllServers(): PeerServer[];
+    /**
+     * Find a registered server by its scheduler allocation token.
+     * Used by the allocation service to correlate a job's registration.
+     */
+    getServerByAllocationToken(token: string): PeerServer | undefined;
     /**
      * Get all online peer servers
      */
     getOnlineServers(): PeerServer[];
+    private lostListeners;
+    onServerLost(cb: (server: PeerServer) => void): void;
+    private notifyLost;
+    /**
+     * A request proxied to this server just failed at the connection level
+     * (refused/reset/timeout). Don't mark it offline on one failure — that's
+     * the heartbeat's job — but do tell listeners so they can verify fast.
+     */
+    reportUnreachable(serverId: string): void;
     /**
      * Check server health and update status
      */

package/node-server/dist/cluster/server-registry.js

@@ -9,7 +9,8 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.serverRegistry = void 0;
 const cluster_secret_1 = require("./cluster-secret");
-const HEARTBEAT_TIMEOUT_MS = 90_000; // 90 seconds (3 missed heartbeats at 30s interval)
+const HEARTBEAT_TIMEOUT_MS = 90_000; // 90s (3 missed heartbeats at 30s interval) -> mark offline
+const OFFLINE_REAP_MS = 180_000; // 3 min without a heartbeat -> remove from the list entirely
 const CLEANUP_INTERVAL_MS = 30_000; // Check for stale servers every 30s
 class ServerRegistry {
     servers = new Map();
@@ -88,6 +89,9 @@ class ServerRegistry {
             if (request.resources) {
                 existing.resources = request.resources;
             }
+            if (request.allocationToken) {
+                existing.allocationToken = request.allocationToken;
+            }
             console.log(`[ServerRegistry] Updated registration for ${serverId}`);
             return { success: true, serverId };
         }
@@ -102,6 +106,7 @@ class ServerRegistry {
             lastHeartbeat: now,
             status: 'online',
             resources: request.resources,
+            allocationToken: request.allocationToken,
         };
         this.servers.set(serverId, server);
         console.log(`[ServerRegistry] Registered new server: ${serverId} (${request.name || 'unnamed'})`);
@@ -144,23 +149,68 @@ class ServerRegistry {
     getAllServers() {
         return Array.from(this.servers.values());
     }
+    /**
+     * Find a registered server by its scheduler allocation token.
+     * Used by the allocation service to correlate a job's registration.
+     */
+    getServerByAllocationToken(token) {
+        if (!token)
+            return undefined;
+        for (const server of this.servers.values()) {
+            if (server.allocationToken === token)
+                return server;
+        }
+        return undefined;
+    }
     /**
      * Get all online peer servers
      */
     getOnlineServers() {
         return this.getAllServers().filter(s => s.status === 'online');
     }
+    // Listeners fired when a peer looks dead (heartbeat timeout, or a proxy
+    // request to it failed at the connection level). Lets the allocation
+    // service react instantly instead of waiting for its next squeue poll.
+    lostListeners = [];
+    onServerLost(cb) {
+        this.lostListeners.push(cb);
+    }
+    notifyLost(server) {
+        for (const cb of this.lostListeners) {
+            try {
+                cb(server);
+            }
+            catch { /* listener errors must not break the sweep */ }
+        }
+    }
+    /**
+     * A request proxied to this server just failed at the connection level
+     * (refused/reset/timeout). Don't mark it offline on one failure — that's
+     * the heartbeat's job — but do tell listeners so they can verify fast.
+     */
+    reportUnreachable(serverId) {
+        const server = this.servers.get(serverId);
+        if (server)
+            this.notifyLost(server);
+    }
     /**
      * Check server health and update status
      */
     checkServerHealth() {
         const now = Date.now();
-        for (const server of this.servers.values()) {
-            if (now - server.lastHeartbeat > HEARTBEAT_TIMEOUT_MS) {
-                if (server.status === 'online') {
-                    console.log(`[ServerRegistry] Server ${server.id} marked offline (heartbeat timeout)`);
-                    server.status = 'offline';
-                }
+        for (const [id, server] of this.servers) {
+            const stale = now - server.lastHeartbeat;
+            // Reap long-gone servers so dead compute allocations / peers don't linger
+            // in the list forever. A recovered server just re-registers and reappears.
+            if (stale > OFFLINE_REAP_MS) {
+                this.servers.delete(id);
+                console.log(`[ServerRegistry] Server ${id} removed (offline for ${Math.round(stale / 1000)}s)`);
+                continue;
+            }
+            if (stale > HEARTBEAT_TIMEOUT_MS && server.status === 'online') {
+                console.log(`[ServerRegistry] Server ${server.id} marked offline (heartbeat timeout)`);
+                server.status = 'offline';
+                this.notifyLost(server);
             }
         }
     }