nbis-wrapper-js 0.0.1

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/first10.txt

@@ -0,0 +1,10 @@
+Test_5.0.0/pcasys/data/images/s0024301.wsq
+Test_5.0.0/pcasys/data/images/s0024302.wsq
+Test_5.0.0/pcasys/data/images/s0024303.wsq
+Test_5.0.0/pcasys/data/images/s0024304.wsq
+Test_5.0.0/pcasys/data/images/s0024305.wsq
+Test_5.0.0/pcasys/data/images/s0024306.wsq
+Test_5.0.0/pcasys/data/images/s0024307.wsq
+Test_5.0.0/pcasys/data/images/s0024308.wsq
+Test_5.0.0/pcasys/data/images/s0024309.wsq
+Test_5.0.0/pcasys/data/images/s0024310.wsq

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/first20.txt

@@ -0,0 +1,20 @@
+Test_5.0.0/pcasys/data/images/s0024301.wsq
+Test_5.0.0/pcasys/data/images/s0024302.wsq
+Test_5.0.0/pcasys/data/images/s0024303.wsq
+Test_5.0.0/pcasys/data/images/s0024304.wsq
+Test_5.0.0/pcasys/data/images/s0024305.wsq
+Test_5.0.0/pcasys/data/images/s0024306.wsq
+Test_5.0.0/pcasys/data/images/s0024307.wsq
+Test_5.0.0/pcasys/data/images/s0024308.wsq
+Test_5.0.0/pcasys/data/images/s0024309.wsq
+Test_5.0.0/pcasys/data/images/s0024310.wsq
+Test_5.0.0/pcasys/data/images/s0024311.wsq
+Test_5.0.0/pcasys/data/images/s0024312.wsq
+Test_5.0.0/pcasys/data/images/s0024313.wsq
+Test_5.0.0/pcasys/data/images/s0024314.wsq
+Test_5.0.0/pcasys/data/images/s0024315.wsq
+Test_5.0.0/pcasys/data/images/s0024316.wsq
+Test_5.0.0/pcasys/data/images/s0024317.wsq
+Test_5.0.0/pcasys/data/images/s0024318.wsq
+Test_5.0.0/pcasys/data/images/s0024319.wsq
+Test_5.0.0/pcasys/data/images/s0024320.wsq

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/first30.txt

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+Test_5.0.0/pcasys/data/images/s0024301.wsq
+Test_5.0.0/pcasys/data/images/s0024302.wsq
+Test_5.0.0/pcasys/data/images/s0024303.wsq
+Test_5.0.0/pcasys/data/images/s0024304.wsq
+Test_5.0.0/pcasys/data/images/s0024305.wsq
+Test_5.0.0/pcasys/data/images/s0024306.wsq
+Test_5.0.0/pcasys/data/images/s0024307.wsq
+Test_5.0.0/pcasys/data/images/s0024308.wsq
+Test_5.0.0/pcasys/data/images/s0024309.wsq
+Test_5.0.0/pcasys/data/images/s0024310.wsq
+Test_5.0.0/pcasys/data/images/s0024311.wsq
+Test_5.0.0/pcasys/data/images/s0024312.wsq
+Test_5.0.0/pcasys/data/images/s0024313.wsq
+Test_5.0.0/pcasys/data/images/s0024314.wsq
+Test_5.0.0/pcasys/data/images/s0024315.wsq
+Test_5.0.0/pcasys/data/images/s0024316.wsq
+Test_5.0.0/pcasys/data/images/s0024317.wsq
+Test_5.0.0/pcasys/data/images/s0024318.wsq
+Test_5.0.0/pcasys/data/images/s0024319.wsq
+Test_5.0.0/pcasys/data/images/s0024320.wsq
+Test_5.0.0/pcasys/data/images/s0024321.wsq
+Test_5.0.0/pcasys/data/images/s0024322.wsq
+Test_5.0.0/pcasys/data/images/s0024323.wsq
+Test_5.0.0/pcasys/data/images/s0024324.wsq
+Test_5.0.0/pcasys/data/images/s0024325.wsq
+Test_5.0.0/pcasys/data/images/s0024326.wsq
+Test_5.0.0/pcasys/data/images/s0024327.wsq
+Test_5.0.0/pcasys/data/images/s0024328.wsq
+Test_5.0.0/pcasys/data/images/s0024329.wsq
+Test_5.0.0/pcasys/data/images/s0024330.wsq

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/first50.txt

@@ -0,0 +1,50 @@
+Test_5.0.0/pcasys/data/images/s0024301.wsq
+Test_5.0.0/pcasys/data/images/s0024302.wsq
+Test_5.0.0/pcasys/data/images/s0024303.wsq
+Test_5.0.0/pcasys/data/images/s0024304.wsq
+Test_5.0.0/pcasys/data/images/s0024305.wsq
+Test_5.0.0/pcasys/data/images/s0024306.wsq
+Test_5.0.0/pcasys/data/images/s0024307.wsq
+Test_5.0.0/pcasys/data/images/s0024308.wsq
+Test_5.0.0/pcasys/data/images/s0024309.wsq
+Test_5.0.0/pcasys/data/images/s0024310.wsq
+Test_5.0.0/pcasys/data/images/s0024311.wsq
+Test_5.0.0/pcasys/data/images/s0024312.wsq
+Test_5.0.0/pcasys/data/images/s0024313.wsq
+Test_5.0.0/pcasys/data/images/s0024314.wsq
+Test_5.0.0/pcasys/data/images/s0024315.wsq
+Test_5.0.0/pcasys/data/images/s0024316.wsq
+Test_5.0.0/pcasys/data/images/s0024317.wsq
+Test_5.0.0/pcasys/data/images/s0024318.wsq
+Test_5.0.0/pcasys/data/images/s0024319.wsq
+Test_5.0.0/pcasys/data/images/s0024320.wsq
+Test_5.0.0/pcasys/data/images/s0024321.wsq
+Test_5.0.0/pcasys/data/images/s0024322.wsq
+Test_5.0.0/pcasys/data/images/s0024323.wsq
+Test_5.0.0/pcasys/data/images/s0024324.wsq
+Test_5.0.0/pcasys/data/images/s0024325.wsq
+Test_5.0.0/pcasys/data/images/s0024326.wsq
+Test_5.0.0/pcasys/data/images/s0024327.wsq
+Test_5.0.0/pcasys/data/images/s0024328.wsq
+Test_5.0.0/pcasys/data/images/s0024329.wsq
+Test_5.0.0/pcasys/data/images/s0024330.wsq
+Test_5.0.0/pcasys/data/images/s0024331.wsq
+Test_5.0.0/pcasys/data/images/s0024332.wsq
+Test_5.0.0/pcasys/data/images/s0024333.wsq
+Test_5.0.0/pcasys/data/images/s0024334.wsq
+Test_5.0.0/pcasys/data/images/s0024335.wsq
+Test_5.0.0/pcasys/data/images/s0024336.wsq
+Test_5.0.0/pcasys/data/images/s0024337.wsq
+Test_5.0.0/pcasys/data/images/s0024338.wsq
+Test_5.0.0/pcasys/data/images/s0024339.wsq
+Test_5.0.0/pcasys/data/images/s0024340.wsq
+Test_5.0.0/pcasys/data/images/s0024341.wsq
+Test_5.0.0/pcasys/data/images/s0024342.wsq
+Test_5.0.0/pcasys/data/images/s0024343.wsq
+Test_5.0.0/pcasys/data/images/s0024344.wsq
+Test_5.0.0/pcasys/data/images/s0024345.wsq
+Test_5.0.0/pcasys/data/images/s0024346.wsq
+Test_5.0.0/pcasys/data/images/s0024347.wsq
+Test_5.0.0/pcasys/data/images/s0024348.wsq
+Test_5.0.0/pcasys/data/images/s0024349.wsq
+Test_5.0.0/pcasys/data/images/s0024350.wsq

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/mkoas.prs

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+# Default values of additional parms needed by mkoas (make
+# orientation arrays command), besides the parms whose names (and
+# default values) are shown in oas.prs.  This file also has
+# comments mentioning the two parms that have no defaults; their values
+# must be specified in the user parms file.
+
+ascii_oas n         # n means non-ascii, i.e., binary
+update_freq 1       # frequency of progress messages
+clobber_oas_file n  # n means do not overwrite oas_file if it already
+                    #   exists
+
+# No default for: proc_images_list, the list of fingerprint images
+#   to make orientation arrays from.
+# No default for: oas_file, the output file that is to be produced
+#   containing orientation arrays.

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/note.txt

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+all.txt: lists all 2700 provided test fingerprints 
+         (FING_CLASS is acquired inside the wsq image).
+
+all_with_class.txt: lists all 2700 provided test fingerprints 
+         (FING_CLASS is acquired from input file list).
+
+first[10,20,50].txt: self-explanatory; first20.txt is the default
+                     used in the demos (pcasys and pcasysx).
+
+mkoas.prs - Default values of some of the additional parameters,
+            besides those shown in oas.prs, for the mkoas (make
+            orientation arrays) command.
+
+oas.prs - Default values of the parameters that affect the making
+          of orientation arrays (oas).  The parameters are
+          used by mkoas (make orientation arrays command) and
+          by the demos (pcasys and pcasysx).
+
+optosf.prs - Default values of some of the parameters of the optosf
+             (optimize overall smoothing factor) command.
+
+optrws.prs - Default values of some of the parameters of the optrws
+             (optimize regional weights) command.
+
+pcasys.prs - Default values of the additional parameters,
+             besides those shown in oas.prs, of pcasys
+             (non-graphical demo).
+
+pcasysx.prs - Default values of the additional parameters,
+              besides those shown in oas.prs, of pcasysx
+              (graphical demo).

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/oas.prs

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+# Default values of the parms that affect the making of oa's
+# (orientation arrays).
+#
+# IMPORTANT: The values of these parms must be the same when making
+# the orientation arrays (using the mkoas command) and optimizing the
+# classifier, as they are when running the finished classifier.
+# The default values shown here are the values that were used in the
+# optimization run that produced the data provided with the
+# distribution.
+
+# For sgmnt (segmentor):
+sgmnt_fac_n 5       # how many threshold-making factors to try
+sgmnt_min_fg 2000   # min. allowed no. of foreground (true) pixels...
+sgmnt_max_fg 8000   # ...and maximum
+sgmnt_nerode 3      # do this many erosions in foreground cleanup
+sgmnt_rsblobs 1     # if 1, remove small blobs in foreground cleanup
+sgmnt_fill 1        # if 1, fill holes in rows, cols in frgrnd cleanup
+sgmnt_min_n 25      # cutting angle becomes zero if any frgrnd edge
+                    #   has fewer than this many pixels
+sgmnt_hist_thresh 20  # threshold that tilted-rows-histogram must meet
+                      #   to find top-location for cutting
+sgmnt_origras_wmax 2000  # max. allowed width of original raster
+sgmnt_origras_hmax 2000  # max. allowed height of original raster
+sgmnt_fac_min 0.75       # minimum threshold-making factor value
+sgmnt_fac_del 0.05       # delta of threshold-making factor value
+sgmnt_slope_thresh 0.90  # if any of the three edges has slope
+  # differing by more than this from the average of the slopes,
+  # then cutting angle is set to zero
+
+# For enhnc (FFT-using image enhancer):
+enhnc_rr1 150 # high-frequency elements of FFT whose r^2 is < this
+              #   value are discarded
+enhnc_rr2 449 # low-frequency elements of FFT whose r^2 is > this
+              #   value are discarded
+enhnc_pow 0.3 # power spectrum is raised to this power before it is
+              #   multiplied by the FFT output
+
+# For rors (ridge-valley orientation finder):
+rors_slit_range_thresh 10 # if the difference between the maximum
+  # and minimum slit-sums at a pixel is less than this, then this
+  # pixel makes no contribution to the histogram used to make the
+  # local average orientation
+           
+# For r92a (r92 registration program wrapper):
+r92a_discard_thresh 0.01 # if squared-length of a local-average
+  # orientation vector is less than this, then conversion of this
+  # vector to an angle for use by r92 just produces the special value
+  # 100., which means an undefined angle
+
+# For rgar (registering pixelwise-orientations-reaverager):
+rgar_std_corepixel_x 245  # x coordinate of standard (median) core...
+rgar_std_corepixel_y 189  # ...pixel, and y coord.  In other words,
+  # this is the standard registration point, to which the particular
+  # core point gets translated to implement registration.

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/optosf.prs

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+# Default values of the parameters of optosf (optimize overall
+# smoothing factor command).  This file also shows, as comments,
+# the remaining optosf parms, which do not have defaults.
+
+n_feats_use 64   # how many (first) features of the feature vecs to use
+osf_init .1      # initial value for osf (overall smoothing factor)
+osf_initstep .2  # initial step size for osf
+osf_stepthr .01  # program stops when step size becomes <= this value
+tablesize 1000   # size of the table used to avoid redundant computing
+verbose y        # if y, write progress messages to stdout
+outfile_desc -   # - (hyphen) means let optosf make the description;
+                 #   otherwise, value is the description
+
+# No default for: fvs_file, the "matrix" format file containing the
+#   prototype feature vectors, each vector stored as one row of the
+#   matrix.
+
+# No default for: classes_file, the "classes" format file containing
+#   the classes of the prototype feature vectors.
+
+# No default for: n_fvs_use_as_protos_set, the number of first
+#   feature vectors from fvs_file to use as the PNN prototypes
+#   when optimizing osf.
+
+# No default for: n_fvs_use_as_tuning_set, the number of first
+#   feature vectors from fvs_file to run the PNN on to optimize
+#   osf.
+
+# No default for: outfile, the output file.

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/optrws.prs

@@ -0,0 +1,57 @@
+# Default values of the parameters of optrws (optimize regional
+# weights command).  This file also has comments for the
+# parms that do not have defaults; the required user parms file
+# must contain values for those parms, and it can also contain
+# values for any other parms, with such values overriding the
+# defaults.
+
+
+n_feats_use 64    # How many (first) features of each K-L feature
+                  #   vector to use.
+
+# Parms affecting irw (initial value for all regional weights), which
+# optrws optimizes before it allows the weights to separate:
+irw_init .1       # Initial value for irw.
+irw_initstep 1.   # Initial step size for irw.
+irw_stepthr .01   # Optimization of irw stops when step size becomes
+                  #   smaller than this threshold.
+
+grad_est_stepsize .001 # Step size for secant-estimation of gradient.
+n_linesearches 2       # Number of (estimate gradient, line search)
+                       #   iterations to do.
+linesearch_initstep .1 # Initial step size for line search.
+linesearch_stepthr .01 # Line search stops when its step size becomes
+                       #   smaller than this threshold.
+tablesize 1000         # Size of a table used to hold pairs of values
+                       #   corresponding to previous computations of
+                       #   the error, either as a function of irw or
+                       #   as a function of distance along downhill-
+                       #   pointing line.  Lookup in this table saves
+                       #   some cycles by avoiding repeated
+                       #   calculations.
+acerror_stepped_points_nprocs 1 # How many processes to use when
+  # computing the activation error at the points stepped to from
+  # a basepoint, in order to compute the approximate gradient by
+  # secant method.  If 1, optrws computes the error at all stepped
+  # points itself.  If > 1, optrws starts this many child processes,
+  # each of which computes the error at an interval of the stepped
+  # points.
+verbose y # If y, write progress messages to standard output.
+ascii_outfiles n  # Whether outputfiles are to be ascii (y) or
+                  #   binary (n).
+
+# No default for: klfvs_file, containing K-L feature vectors to
+#   be used as prototypes set, and also as "tuning" set, for the
+#   optimization.  This must be a pcasys "matrix" file, with each
+#   K-L feature vector being a row of the matrix; such a file may
+#   be produced by running the lintran command on a set of
+#   orientation arrays, using an eigenvectors file as the transform
+#   matrix.
+# No default for: classes_file, containing the classes that go with
+#   the feature vectors of klfvs_file.  Must be a pcasys "classes"
+#   file.
+# No default for: n_klfvs_use, how many of the K-L feature vectors
+#   to use (off the top).
+# No default for: eigvecs_file, containing eigenvectors.
+# No default for: outfiles_dir, the directory in which optrws is to
+#   produce its output files.

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/pcasys.mlp

@@ -0,0 +1,120 @@
+# Default values of the additional parms needed by pcasys
+# (non-graphical demo), besides those shown in oas.prs.  Also
+# has default values for the data files (transform matrix, prototype
+# feature vectos, and their classes), which are files that will
+# exist after installation.
+
+
+# Set classifier as (1) PNN (Probabilistic Neural Net) or
+# (2) MLP (Multi-layer Perceptron)
+#PNN
+#network_type 1
+#MLP
+network_type 2
+
+# trnsfrm (linear transform) parm: how many (first) rows of the
+# transform matrix to use, and hence, how many features to make for
+# the feature vector of each incoming fingerprint, and also how many
+# (first) features to use of each prototype feature vector when running
+# the classifier:
+#PNN
+#trnsfrm_nrows_use 64
+#MLP
+trnsfrm_nrows_use 128
+
+# trnsfrm data: transform matrix file, used by the demo to transform
+# the orientation array of an incoming fingerprint into the
+# low-dimensional feature vector that will be sent to the
+# classifier:
+#PNN
+#trnsfrm_matrix_file pcasys/weights/pnn/pnn_tmat.bin
+#MLP
+trnsfrm_matrix_file pcasys/weights/mlp/mlp_tmat.bin
+
+# Class string used in graphics mode to display the
+# ouput activations.  Should be same size as number of outputs
+# (ie. pnn_nclasses or number outputs in mlp_wts file).  Must be
+# some combination of "ALRSTW".  For PNN, these must be the same
+# classes as used in the prototype files and be in the same order 
+# as when the prototype were optimized.
+cls_str ALRSTW
+
+# pnn (Probabilistic Neural Net) parms:
+pnn_nprotos_use 24300  # How many first feature vectors to use, from
+  # the set of prototypes.  The value 24300 corresponds to the entire
+  # provided set, corresponding to volumes 1 - 9 "f" rolllings of SD14
+pnn_nclasses 6  # How many different classes there are.  For the
+  # fingerprint pattern-level classification problem, there are 6:
+  # A, L, R, S, T, and W.
+pnn_osf 1.368750 # Overall smoothing factor for the PNN.  May be optimized
+  # using optosf.
+
+# pnn data:
+#   prototype feature vectors...
+pnn_protos_fvs_file pcasys/weights/pnn/profvs.bin
+#   ...and their classes
+pnn_protos_classes_file pcasys/weights/pnn/procls.asc
+
+# MLP (Multi-layer Perceptron) network parameters:
+# mlp weights file
+mlp_wts_file pcasys/weights/mlp/mlp_wts.bin
+
+# For pseudo (pseudoridge tracer):
+pseudo_slthresh0           0.   # If squared-length of an orientation
+  # vector (in the fine grid used by pseudo) is < this value, then
+  # the vector is zeroed before the (possible) application of smoothing
+  # iterations.
+pseudo_slthresh1           0.04 # If, after (possible) smoothing
+  # iterations, the squared-length of an orientation vector is <
+  # this value, then this location is marked as bad, meaning that
+  # no pseudoridge is allowed to start here and if one arrives here,
+  # tracing stops at this point.
+pseudo_smooth_cwt          0.   # Center-weight for each iteration of
+  # smoothing of the orientation grid.  An iteration consists of
+  # replacing each vector with the weighted average of itself and its
+  # four neighbors, with itself getting this much weight and its
+  # neighbors equally dividing the remaining weight (sum of weights
+  # is 1).
+pseudo_stepsize            1.   # Length of one step in the production
+  # of a pseudoridge, which is actually a polygon.  A value of
+  # 1. corresponds to the spacing between vectors in the (finer)
+  # orientation array used by pseudo.
+pseudo_max_tilt           45    # Max allowed tilt of a candidate
+  # concave-upward's vertex (point of sharpest turning) from a
+  # horizontal that corresponds to exact uprightness.  In degrees.
+pseudo_min_side_turn      70    # Minimum cumulative turn that each
+  # side of concave-upward must have.  In degrees.
+# Limits of the block of starting positions for pseudoridge tracing:
+pseudo_initi_s            11  # small limit, vertical
+pseudo_initi_e            46  # large limit, vertical
+pseudo_initj_s            11  # small limit, horizontal
+pseudo_initj_e            50  # large limit, horizontal
+pseudo_maxsteps_eachdir  200    # Max number of steps that tracer ever
+  # takes in either of the two directions from starting point.
+  # (Controls the amount of memory needed to store a pseudoridge, and
+  # more importantly, such a limit is needed to prevent possible
+  # infinitely looping pseudridges in some whorls.)
+pseudo_nsmooth             3    # How many iterations of smoothing
+pseudo_maxturn            40    # Maximum turn that is allowed to
+  # occur in a single step (in degrees).  An attempted turn sharper
+  # than this causes tracing to stop.
+
+# For combine, the routine that combines PNN and pseudoridge-tracer
+# results.  This is the confidence value combine assigns if pseudo
+# finds a concave-upward (causing hyp class to be whorl) but PNN
+# thinks the print is not a whorl:
+combine_clash_confidence .9
+
+# List of fingerprint images to run the demo on, which
+# consists of the 2700 fingerprints of volume 10 "s" rollings of
+# NIST Special Database 14.
+demo_images_list pcasys/parms/all_with_class.txt
+
+outfile pcasys.out  # Output file to be produced.  If no output
+  # file is wanted, set this to /dev/null.
+
+clobber_outfile n  # If n, then if outfile already exists, exit with
+  # an error message.  If y, then overwrite outfile if it already
+  # exists.
+
+verbose y # If y, then write progress messages to stdout.

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/pcasys.pnn

@@ -0,0 +1,120 @@
+# Default values of the additional parms needed by pcasys
+# (non-graphical demo), besides those shown in oas.prs.  Also
+# has default values for the data files (transform matrix, prototype
+# feature vectos, and their classes), which are files that will
+# exist after installation.
+
+
+# Set classifier as (1) PNN (Probabilistic Neural Net) or
+# (2) MLP (Multi-layer Perceptron)
+#PNN
+network_type 1
+#MLP
+#network_type 2
+
+# trnsfrm (linear transform) parm: how many (first) rows of the
+# transform matrix to use, and hence, how many features to make for
+# the feature vector of each incoming fingerprint, and also how many
+# (first) features to use of each prototype feature vector when running
+# the classifier:
+#PNN
+trnsfrm_nrows_use 64
+#MLP
+#trnsfrm_nrows_use 128
+
+# trnsfrm data: transform matrix file, used by the demo to transform
+# the orientation array of an incoming fingerprint into the
+# low-dimensional feature vector that will be sent to the
+# classifier:
+#PNN
+trnsfrm_matrix_file pcasys/weights/pnn/pnn_tmat.bin
+#MLP
+#trnsfrm_matrix_file pcasys/weights/mlp/mlp_tmat.bin
+
+# Class string used in graphics mode to display the
+# ouput activations.  Should be same size as number of outputs
+# (ie. pnn_nclasses or number outputs in mlp_wts file).  Must be
+# some combination of "ALRSTW".  For PNN, these must be the same
+# classes as used in the prototype files and be in the same order 
+# as when the prototype were optimized.
+cls_str ALRSTW
+
+# pnn (Probabilistic Neural Net) parms:
+pnn_nprotos_use 24300  # How many first feature vectors to use, from
+  # the set of prototypes.  The value 24300 corresponds to the entire
+  # provided set, corresponding to volumes 1 - 9 "f" rolllings of SD14
+pnn_nclasses 6  # How many different classes there are.  For the
+  # fingerprint pattern-level classification problem, there are 6:
+  # A, L, R, S, T, and W.
+pnn_osf 1.368750 # Overall smoothing factor for the PNN.  May be optimized
+  # using optosf.
+
+# pnn data:
+#   prototype feature vectors...
+pnn_protos_fvs_file pcasys/weights/pnn/profvs.bin
+#   ...and their classes
+pnn_protos_classes_file pcasys/weights/pnn/procls.asc
+
+# MLP (Multi-layer Perceptron) network parameters:
+# mlp weights file
+mlp_wts_file pcasys/weights/mlp/mlp_wts.bin
+
+# For pseudo (pseudoridge tracer):
+pseudo_slthresh0           0.   # If squared-length of an orientation
+  # vector (in the fine grid used by pseudo) is < this value, then
+  # the vector is zeroed before the (possible) application of smoothing
+  # iterations.
+pseudo_slthresh1           0.04 # If, after (possible) smoothing
+  # iterations, the squared-length of an orientation vector is <
+  # this value, then this location is marked as bad, meaning that
+  # no pseudoridge is allowed to start here and if one arrives here,
+  # tracing stops at this point.
+pseudo_smooth_cwt          0.   # Center-weight for each iteration of
+  # smoothing of the orientation grid.  An iteration consists of
+  # replacing each vector with the weighted average of itself and its
+  # four neighbors, with itself getting this much weight and its
+  # neighbors equally dividing the remaining weight (sum of weights
+  # is 1).
+pseudo_stepsize            1.   # Length of one step in the production
+  # of a pseudoridge, which is actually a polygon.  A value of
+  # 1. corresponds to the spacing between vectors in the (finer)
+  # orientation array used by pseudo.
+pseudo_max_tilt           45    # Max allowed tilt of a candidate
+  # concave-upward's vertex (point of sharpest turning) from a
+  # horizontal that corresponds to exact uprightness.  In degrees.
+pseudo_min_side_turn      70    # Minimum cumulative turn that each
+  # side of concave-upward must have.  In degrees.
+# Limits of the block of starting positions for pseudoridge tracing:
+pseudo_initi_s            11  # small limit, vertical
+pseudo_initi_e            46  # large limit, vertical
+pseudo_initj_s            11  # small limit, horizontal
+pseudo_initj_e            50  # large limit, horizontal
+pseudo_maxsteps_eachdir  200    # Max number of steps that tracer ever
+  # takes in either of the two directions from starting point.
+  # (Controls the amount of memory needed to store a pseudoridge, and
+  # more importantly, such a limit is needed to prevent possible
+  # infinitely looping pseudridges in some whorls.)
+pseudo_nsmooth             3    # How many iterations of smoothing
+pseudo_maxturn            40    # Maximum turn that is allowed to
+  # occur in a single step (in degrees).  An attempted turn sharper
+  # than this causes tracing to stop.
+
+# For combine, the routine that combines PNN and pseudoridge-tracer
+# results.  This is the confidence value combine assigns if pseudo
+# finds a concave-upward (causing hyp class to be whorl) but PNN
+# thinks the print is not a whorl:
+combine_clash_confidence .9
+
+# List of fingerprint images to run the demo on, which
+# consists of the 2700 fingerprints of volume 10 "s" rollings of
+# NIST Special Database 14.
+demo_images_list pcasys/parms/all_with_class.txt
+
+outfile pcasys.out  # Output file to be produced.  If no output
+  # file is wanted, set this to /dev/null.
+
+clobber_outfile n  # If n, then if outfile already exists, exit with
+  # an error message.  If y, then overwrite outfile if it already
+  # exists.
+
+verbose y # If y, then write progress messages to stdout.

package/libnbis/nbis_x86-64_linux/nbis/pcasys/parms/pcasys.prs

@@ -0,0 +1,120 @@
+# Default values of the additional parms needed by pcasys
+# (non-graphical demo), besides those shown in oas.prs.  Also
+# has default values for the data files (transform matrix, prototype
+# feature vectos, and their classes), which are files that will
+# exist after installation.
+
+
+# Set classifier as (1) PNN (Probabilistic Neural Net) or
+# (2) MLP (Multi-layer Perceptron)
+#PNN
+#network_type 1
+#MLP
+network_type 2
+
+# trnsfrm (linear transform) parm: how many (first) rows of the
+# transform matrix to use, and hence, how many features to make for
+# the feature vector of each incoming fingerprint, and also how many
+# (first) features to use of each prototype feature vector when running
+# the classifier:
+#PNN
+#trnsfrm_nrows_use 64
+#MLP
+trnsfrm_nrows_use 128
+
+# trnsfrm data: transform matrix file, used by the demo to transform
+# the orientation array of an incoming fingerprint into the
+# low-dimensional feature vector that will be sent to the
+# classifier:
+#PNN
+#trnsfrm_matrix_file pcasys/weights/pnn/pnn_tmat.bin
+#MLP
+trnsfrm_matrix_file pcasys/weights/mlp/mlp_tmat.bin
+
+# Class string used in graphics mode to display the
+# ouput activations.  Should be same size as number of outputs
+# (ie. pnn_nclasses or number outputs in mlp_wts file).  Must be
+# some combination of "ALRSTW".  For PNN, these must be the same
+# classes as used in the prototype files and be in the same order 
+# as when the prototype were optimized.
+cls_str ALRSTW
+
+# pnn (Probabilistic Neural Net) parms:
+pnn_nprotos_use 24300  # How many first feature vectors to use, from
+  # the set of prototypes.  The value 24300 corresponds to the entire
+  # provided set, corresponding to volumes 1 - 9 "f" rolllings of SD14
+pnn_nclasses 6  # How many different classes there are.  For the
+  # fingerprint pattern-level classification problem, there are 6:
+  # A, L, R, S, T, and W.
+pnn_osf 1.368750 # Overall smoothing factor for the PNN.  May be optimized
+  # using optosf.
+
+# pnn data:
+#   prototype feature vectors...
+pnn_protos_fvs_file pcasys/weights/pnn/profvs.bin
+#   ...and their classes
+pnn_protos_classes_file pcasys/weights/pnn/procls.asc
+
+# MLP (Multi-layer Perceptron) network parameters:
+# mlp weights file
+mlp_wts_file pcasys/weights/mlp/mlp_wts.bin
+
+# For pseudo (pseudoridge tracer):
+pseudo_slthresh0           0.   # If squared-length of an orientation
+  # vector (in the fine grid used by pseudo) is < this value, then
+  # the vector is zeroed before the (possible) application of smoothing
+  # iterations.
+pseudo_slthresh1           0.04 # If, after (possible) smoothing
+  # iterations, the squared-length of an orientation vector is <
+  # this value, then this location is marked as bad, meaning that
+  # no pseudoridge is allowed to start here and if one arrives here,
+  # tracing stops at this point.
+pseudo_smooth_cwt          0.   # Center-weight for each iteration of
+  # smoothing of the orientation grid.  An iteration consists of
+  # replacing each vector with the weighted average of itself and its
+  # four neighbors, with itself getting this much weight and its
+  # neighbors equally dividing the remaining weight (sum of weights
+  # is 1).
+pseudo_stepsize            1.   # Length of one step in the production
+  # of a pseudoridge, which is actually a polygon.  A value of
+  # 1. corresponds to the spacing between vectors in the (finer)
+  # orientation array used by pseudo.
+pseudo_max_tilt           45    # Max allowed tilt of a candidate
+  # concave-upward's vertex (point of sharpest turning) from a
+  # horizontal that corresponds to exact uprightness.  In degrees.
+pseudo_min_side_turn      70    # Minimum cumulative turn that each
+  # side of concave-upward must have.  In degrees.
+# Limits of the block of starting positions for pseudoridge tracing:
+pseudo_initi_s            11  # small limit, vertical
+pseudo_initi_e            46  # large limit, vertical
+pseudo_initj_s            11  # small limit, horizontal
+pseudo_initj_e            50  # large limit, horizontal
+pseudo_maxsteps_eachdir  200    # Max number of steps that tracer ever
+  # takes in either of the two directions from starting point.
+  # (Controls the amount of memory needed to store a pseudoridge, and
+  # more importantly, such a limit is needed to prevent possible
+  # infinitely looping pseudridges in some whorls.)
+pseudo_nsmooth             3    # How many iterations of smoothing
+pseudo_maxturn            40    # Maximum turn that is allowed to
+  # occur in a single step (in degrees).  An attempted turn sharper
+  # than this causes tracing to stop.
+
+# For combine, the routine that combines PNN and pseudoridge-tracer
+# results.  This is the confidence value combine assigns if pseudo
+# finds a concave-upward (causing hyp class to be whorl) but PNN
+# thinks the print is not a whorl:
+combine_clash_confidence .9
+
+# List of fingerprint images to run the demo on, which
+# consists of the 2700 fingerprints of volume 10 "s" rollings of
+# NIST Special Database 14.
+demo_images_list pcasys/parms/all_with_class.txt
+
+outfile pcasys.out  # Output file to be produced.  If no output
+  # file is wanted, set this to /dev/null.
+
+clobber_outfile n  # If n, then if outfile already exists, exit with
+  # an error message.  If y, then overwrite outfile if it already
+  # exists.
+
+verbose y # If y, then write progress messages to stdout.