musubix3 0.1.18 → 0.1.20

package/.github/plugin/marketplace.json

@@ -3,13 +3,13 @@
   "owner": { "name": "nahisaho" },
   "metadata": {
     "description": "GitHub Copilot CLI specification-driven development skills",
-    "version": "0.1.18"
+    "version": "0.1.20"
   },
   "plugins": [
     {
       "name": "musubix3",
       "source": ".",
-      "version": "0.1.18",
+      "version": "0.1.20",
       "description": "Evidence-driven SDD without duplicating native Copilot capabilities."
     }
   ]

package/CHANGELOG.md

@@ -1,5 +1,55 @@
 # Changelog
 
+## 0.1.20 - 2026-09-22
+
+- Add `evidence merge` for append-only consolidation of `order.json`,
+  `tdd.json`, `changes.json`, and `change-waivers.json` from another project
+  root, with dry-run planning, crash-safe journaling, deterministic conflict
+  handling, and explicit recovery for interrupted merges.
+- Add project-wide evidence writer serialization with atomic lock publication,
+  coordinated readers, reentrant same-process ownership, and deterministic
+  multi-process contention handling. Stale-lock recovery validates Linux
+  process identity and lock inode metadata before removal; unsupported
+  platforms fail closed and require operator-reviewed manual removal using the
+  reported lock path and owner metadata. On Linux, operators can use
+  `evidence unlock --recover` for validated stale-lock removal (#28).
+- Protect direct analysis APIs and CLI writer paths, including adapter reports,
+  trace/cache outputs, approvals, workflow evidence, TDD evidence, and evidence
+  merge/recovery. Dry-run and exempt command modes remain explicitly classified,
+  and merge coordination checks the destination before the incoming project
+  (#28).
+- Add deterministic regression coverage for release-time inode replacement,
+  stale-lock recovery, destination-first merge conflicts, CLI classification,
+  exempt commands, graph cache protection, and direct adapter API access (#28).
+- Existing projects should rerun `musubix3 init` to add the writer-lock file
+  and its staging-file pattern to `.gitignore`.
+
+- Fix requirement-batch validation selecting stale legacy full-set evidence
+  when later scoped Red/Implementation/Green evidence exists. Validation,
+  completeness, order-migration checks, and waiver condition re-derivation now
+  use the applicable batch with the latest Red order; later incomplete batches
+  remain fail-closed instead of falling back (#27).
+
+- Fix strict workflow verification for resumed Copilot CLI conversations.
+  A single-session transcript may now contain one or more routine
+  `session.shutdown` / `session.resume` episodes before its final routine
+  shutdown. Invalid or unmatched lifecycle transitions, mixed `result` and
+  shutdown formats, abnormal shutdowns, multiple session identities, and
+  non-final terminal state still fail closed. `workflow-sanitize` retains the
+  resume boundaries required for strict re-verification (#26).
+
+## 0.1.19 - 2026-09-14
+
+Bug fix: change completeness now recognizes every requirement listed in a
+single authoritative `@verifies` declaration.
+
+- Reuses the trace parser's language-aware comment blocks, preserving support
+  for TypeScript/JSDoc, Python, Go, Rust, and PHP comments while excluding
+  annotation-like text in strings.
+- Requires `@id` and the matching `@verifies` declaration to remain in the same
+  comment block.
+- Adds regressions for multi-requirement and Python comment annotations.
+
 ## 0.1.18 - 2026-09-13
 
 New feature: bulk workflow-waiver recording, resolving the repeated

package/README-ja.md

@@ -1,6 +1,6 @@
 # musubix3
 
-**最新リリース v0.1.17 · GitHub Copilot CLI 専用 · Node.js ≥20 · TypeScript · MIT**
+**最新リリース v0.1.20 · GitHub Copilot CLI 専用 · Node.js ≥20 · TypeScript · MIT**
 
 [English](README.md)
 
@@ -357,6 +357,9 @@ npx musubix3 tdd green TEST-EXAMPLE-002 --requirement REQ-EXAMPLE-002 --command
 | `formal check <file> [--solver auto\|none\|z3\|lean]` | 明示的なBoolean・条件・数値・時間・状態遷移モデルを検査 |
 | `model-correspondence validate` | Formal JSON→生成trace→正本passing testの証拠を再検証 |
 | `evidence refresh [--changed]` | 同じfail-closed gate pipelineで派生証拠を再生成 |
+| `evidence unlock --recover` | 同一hostでowner processが確実に終了したevidence writer lockだけを復旧する。live、別host、不正metadata、PID再利用、未対応platform、判定不能なownerは変更せず拒否する |
+| `evidence merge --incoming <directory> [--dry-run]` | 現在rootの有効なorder/TDD/change/waiver履歴へ、別projectの有効な履歴を統合する。base recordを先に保持し、完全重複をdedupeし、payload競合・chronology逆転・Quality後のbatch追加は書込みなしで拒否する。dry-runも同じ計画・検証を行い、incoming directoryは変更しない |
+| `evidence merge --recover` | journalから中断したevidence mergeを復旧する。prepared transactionはrollback、committed transactionは検証してroll-forwardする。`EVIDENCE_MERGE_RECOVERY_UNSAFE`の場合は`.musubix/evidence`をバックアップし、信頼できるsourceから`order.json`、`tdd.json`、`changes.json`、`change-waivers.json`を復元または検証し、merge journal/tempを隔離してから再検証する |
 | `mutation validate` | 要求scopeのschema-v1 killed-mutant証拠を再検証 |
 | `mutation identity <REQ-ID> <TEST-ID> <sourcePath> <operator> <line> <column>` | mutation reportが宣言すべき決定的な`MUT-*`識別子を出力 |
 | `tdd validate` | 保存済みRed/Green/Refactorの順序、指紋、実行時間、hash-chainを検証 |
@@ -369,12 +372,72 @@ npx musubix3 tdd green TEST-EXAMPLE-002 --requirement REQ-EXAMPLE-002 --command
 | `attestation oidc-audience --key-id <id> [--public-key-file <pem>]` | 署名鍵を許可するGitHub custom audienceを導出 |
 | `attestation payload --provider <name> --run-id <id> --key-id <id> [--public-key-file <pem>] [--github-oidc-token-file <jwt>]` | 外部署名用の正規化CI payloadを出力 |
 | `attestation verify` | 静的鍵またはGitHub OIDC認可済みEd25519 provenanceを検証 |
-| `change-record <CHANGE-ID> <phase> --requirement <REQ-ID...>` | 段階的変更の成果物・TDD指紋を順序付きで記録 |
+| `change-record <CHANGE-ID> <phase> --requirement <REQ-ID...>` | 段階的変更の成果物・TDD指紋を順序付きで記録。複数batchが同じrequirementを含む場合、検証はRedの`order`が最新のbatchを使用し、後発batchが未完了でも古い完了済み証跡へ暗黙にフォールバックしない |
 | `config lint` | `args`が存在しないrepository相対パスを参照する設定済みコマンドを報告 |
 | `config scaffold` | 検出したGo/Rust/Maven/Python/Nodeツールチェーン向けのnative test-command候補を`.musubix/config.json`へ書き込まずに提案 |
 | `gate [--changed] [--feature <name>]` | 検証・実コマンドを集約し品質根拠を保存。`--feature`は requirements/design/trace/tdd/change-history/change-completeness の検査を1機能へ限定する診断用途で、repository全体のgateの代替ではない |
 | `status` | 成果物数と準備状況・陳腐化を表示 |
 
+### Evidence writer coordination
+
+証拠または生成済みproject stateを変更するcommandは、
+`<realpath(project-root)>/.musubix/evidence/.writer-lock.json` の単一の
+fail-fast lockを使用します。対象はinit/upgradeの書込み、gate/evidence
+refresh、TDD/change/workflow/approval記録、trace/graph/knowledge/formal生成、
+evidence merge/recoveryです。完全なowner metadataを同一directoryのstaging
+fileへ書込み・flushした後、排他的hard linkで公開するため、canonical lockが
+空または部分的な状態で見えることはありません。このatomic publicationを
+提供できないfilesystemでは`EVIDENCE_WRITER_LOCK_ACQUIRE_FAILED`となり、
+非atomicなfallbackは行いません。
+
+status、approval prepare/validate、trace/graph inspection、knowledge query、
+TDD validate、attestation payload/verify、merge dry-runなどのcoordinated
+readerは、無関係なownerが存在すると`EVIDENCE_WRITER_LOCKED`で即時失敗し、
+待機もread lease保持もしません。同じowner async context内のnested analysis
+operationはlockを再利用しますが、child processとworker threadはcontextを
+継承しません。したがって設定commandが同じrootへmusubix3 writer/readerを
+再帰実行するとfail-fastになるため、そのcommand chainを修正してください。
+musubix3外からproject fileを直接変更するprogramはcoordination対象外です。
+
+異常終了でlockが残った場合は`evidence unlock --recover`を実行します。
+自動復旧は現在Linux限定で、hostname、boot identity、PID namespaceが一致し、
+owner PIDが確実に存在しない場合だけ削除します。live、PID再利用、別host、
+不正・変更済みmetadata、未対応platform、判定不能なlockは正確なpathと確認手順を
+表示して保持し、force modeはありません。canonical lockと
+`.writer-lock.<transactionId>.json` staging fileはGitおよび生成入力から除外
+されます。関連processが存在しないことを確認した後に限り、残存staging fileを
+正確なpath指定で削除できます。
+
+writer-lock checkはmerge journal checkより先に実行されます。abandoned writer
+lockとpending merge journalが両方ある場合は、先に
+`evidence unlock --recover`、次に`evidence merge --recover`を実行します。
+unlock recoveryはmerge journalを読み書きしません。
+
+### Evidence history の統合
+
+`evidence merge` は両方のrootに個別に有効な`order.json`、`tdd.json`、
+`changes.json`があることを前提とし、`change-waivers.json`は省略できます。
+incomingのreal pathは現在rootと分離され、read-onlyのままです。現在worktree
+には新しく導入するincoming change documentが必要です。duplicate比較では、
+再構築対象のsequence/order/hash-link fieldだけを除外してJSONをcanonical化します。
+結果はbase historyを先に、incomingの相対順序を後に保持するため、論理orderが
+正しくてもwall-clockの`recordedAt` warningは残り得ます。base Qualityより後に
+incoming RedまたはImplementation batchがある場合は、Quality記録前にhistoryを
+統合し、統合後のhistoryに対してQualityを再記録してください。
+
+`--dry-run`は書込みなしで同じconflict、candidate、stale waiver、
+supersession解析を行います。統合によりwaiver snapshotがstaleかつinactiveに
+なったり、より後のauthoritative waiverが選択されたりするため、該当waiverを
+明示的に再承認し、通常の`gate`と`status`を再実行してください。統合対象は
+`order.json`、`tdd.json`、`changes.json`、`change-waivers.json`だけです。
+workflow、approval、quality、formal、mutation、correspondence、performance、
+attestation、native test-report evidenceは既存の再生成またはconflict解決手順を
+使用します。`EVIDENCE_MERGE_CANDIDATE_INVALID`は基礎となるfile/entity診断を
+すべて報告します。中断後は`--recover`を使い、
+`EVIDENCE_MERGE_RECOVERY_UNSAFE`の場合は`.musubix/evidence`をバックアップし、
+信頼できるsourceから4 targetを復元または検証し、merge journal/tempを隔離して
+structural validationを再実行してください。
+
 `--changed` は Git の staged/unstaged/untracked/rename/delete を収集し、
 変更・影響を表示します。**安全のため全検査と全設定コマンドを再実行**します。
 未実施検査を推測で成功扱いする差分最適化はありません。常駐プロセスもありません。
@@ -752,10 +815,13 @@ review evidenceへ入れる前に`workflow-sanitize`で必要最小限へ変換
 重複workflow eventではなく`change-record`に記録します。
 `"workflow":{"mode":"strict"}`または`--strict`では、全非空行のJSON、
 event timestamp、tool start/completionの1対1整合性、最後に1件だけ存在する
-正常終了terminal eventを追加検査します。対応形式は`exitCode: 0`の`result`、
+正常終了terminal stateを追加検査します。対応形式は`exitCode: 0`の`result`、
 または一意なsession UUIDと、末尾の
 `session.shutdown(data.shutdownType="routine")`を持つ現行Copilot CLI形式です。
-terminal形式の混在、複数session、異常shutdown、末尾以外のterminal eventは
+shutdown形式では、各中間routine shutdownの直後に`session.resume`がある場合、
+1回以上のshutdown/resumeを含む再開sessionも受理し、`workflow-sanitize`は
+検証に必要なlifecycle境界を保持します。terminal形式の混在、対応しない
+shutdown/resume、複数session、異常shutdown、末尾以外のterminal stateは
 fail closedで拒否します。terminal `sessionId`、exit code、
 event数、terminal時刻、raw source hash、canonical transcript hashを保存します。
 `workflow.expectedSessionId`または`--session-id`でcaller申告sessionの置換を拒否します。

package/README.md

@@ -1,6 +1,6 @@
 # musubix3
 
-**Latest release v0.1.17 · GitHub Copilot CLI only · Node.js ≥20 · TypeScript · MIT**
+**Latest release v0.1.20 · GitHub Copilot CLI only · Node.js ≥20 · TypeScript · MIT**
 
 [日本語](README-ja.md)
 
@@ -407,6 +407,9 @@ validation/gate or requested solver failure, **2** usage, I/O or malformed confi
 | `formal check <file> [--solver auto\|none\|z3\|lean]` | Check the explicit Boolean/conditional/numeric/temporal/transition model |
 | `model-correspondence validate` | Revalidate Formal JSON → generated trace → authoritative passing test evidence (run `evidence refresh` first to generate its evidence file) |
 | `evidence refresh [--changed]` | Regenerate derived evidence through the same fail-closed gate pipeline |
+| `evidence unlock --recover` | Recover only a demonstrably dead same-host evidence-writer lock. Live, cross-host, malformed, PID-reused, unsupported-platform, and indeterminate owners are refused without mutation. |
+| `evidence merge --incoming <directory> [--dry-run]` | Merge the current root's valid order/TDD/change/waiver history with another valid project history. Base records remain first; exact duplicates are deduplicated; ambiguous payloads, chronology inversions, and post-Quality batch additions fail without writes. Dry-run performs the same planning and validation. The incoming directory is never modified. |
+| `evidence merge --recover` | Recover an interrupted evidence merge from its journal. Prepared transactions roll back; committed transactions verify and roll forward. If recovery reports `EVIDENCE_MERGE_RECOVERY_UNSAFE`, back up `.musubix/evidence`, restore or verify `order.json`, `tdd.json`, `changes.json`, and `change-waivers.json` from a trusted source, quarantine merge journal/temporary files, then rerun validation. |
 | `mutation validate` | Revalidate requirement-scoped schema-v1 killed-mutant evidence |
 | `mutation identity <REQ-ID> <TEST-ID> <sourcePath> <operator> <line> <column>` | Print the deterministic `MUT-*` identity a mutation report must declare |
 | `tdd validate` | Validate persisted Red/Green/Refactor order, fingerprints, durations, and hash-chain evidence |
@@ -419,12 +422,73 @@ validation/gate or requested solver failure, **2** usage, I/O or malformed confi
 | `attestation oidc-audience --key-id <id> [--public-key-file <pem>]` | Derive the GitHub custom audience that authorizes a signing key |
 | `attestation payload --provider <name> --run-id <id> --key-id <id> [--public-key-file <pem>] [--github-oidc-token-file <jwt>]` | Emit canonical unsigned CI payload for external signing |
 | `attestation verify` | Verify static-key or GitHub OIDC-authorized Ed25519 provenance |
-| `change-record <CHANGE-ID> <phase> --requirement <REQ-ID...> [--allow-unchanged] [--dry-run]` | Record ordered artifact/TDD fingerprints for a staged change. `impact`/`requirements`/`design`/`quality` require the change's full requirement ID set; `red`/`implementation`/`green` also accept a proper non-empty subset, recorded as an independent per-requirement batch, so a multi-requirement change can be completed with an interleaved per-requirement Red-Implementation-Green loop instead of one global batch. Rejects with a non-zero exit and a stable `*_UNCHANGED_AT_RECORD` diagnostic (leaving `changes.json`/`order.json` untouched) when a phase's fingerprint is byte-identical to the immediately preceding phase's, since that mistake is otherwise only caught much later by `trace check --strict`/`gate`, at which point the append-only evidence store makes it unfixable. `--allow-unchanged` bypasses this check for the `requirements` phase only (the one case `sdd-change` documents as legitimate: a defect fix that intentionally leaves its requirement unchanged) and persists a durable marker so later validation does not re-flag it. `--dry-run` previews the exact success/rejection outcome, including every existing check, without persisting anything. Each recorded phase/batch stores both `order` (the verified, `gate`-checked logical append sequence from `order.json` — the only field guaranteed correct and monotonic per change) and `recordedAt` (an independently captured wall-clock timestamp with no ordering guarantee relative to `order`); `gate` reports a non-blocking `CHANGE_RECORDEDAT_OUT_OF_ORDER` warning when a change's `recordedAt` values disagree with its `order` sequence |
+| `change-record <CHANGE-ID> <phase> --requirement <REQ-ID...> [--allow-unchanged] [--dry-run]` | Record ordered artifact/TDD fingerprints for a staged change. `impact`/`requirements`/`design`/`quality` require the change's full requirement ID set; `red`/`implementation`/`green` also accept a proper non-empty subset, recorded as an independent per-requirement batch, so a multi-requirement change can be completed with an interleaved per-requirement Red-Implementation-Green loop instead of one global batch. When multiple batches contain the same requirement, validation uses the batch with the latest Red `order`; a later incomplete batch supersedes older evidence and must be completed rather than silently falling back. Rejects with a non-zero exit and a stable `*_UNCHANGED_AT_RECORD` diagnostic (leaving `changes.json`/`order.json` untouched) when a phase's fingerprint is byte-identical to the immediately preceding phase's, since that mistake is otherwise only caught much later by `trace check --strict`/`gate`, at which point the append-only evidence store makes it unfixable. `--allow-unchanged` bypasses this check for the `requirements` phase only (the one case `sdd-change` documents as legitimate: a defect fix that intentionally leaves its requirement unchanged) and persists a durable marker so later validation does not re-flag it. `--dry-run` previews the exact success/rejection outcome, including every existing check, without persisting anything. Each recorded phase/batch stores both `order` (the verified, `gate`-checked logical append sequence from `order.json` — the only field guaranteed correct and monotonic per change) and `recordedAt` (an independently captured wall-clock timestamp with no ordering guarantee relative to `order`); `gate` reports a non-blocking `CHANGE_RECORDEDAT_OUT_OF_ORDER` warning when a change's `recordedAt` values disagree with its `order` sequence |
 | `config lint` | Report configured commands whose `args` reference repository-relative paths that do not exist |
 | `config scaffold` | Propose native test-command entries for detected Go/Rust/Maven/Python/Node toolchains without writing `.musubix/config.json` |
 | `gate [--changed] [--feature <name>]` | Fresh full checks plus actual configured commands; persist evidence. `--feature` scopes requirements/design/trace/tdd/change-history/change-completeness checks to one feature as a diagnostic view; never a substitute for the repository-wide gate |
 | `status` | Artifact counts and readiness/staleness summary |
 
+### Evidence writer coordination
+
+Commands that mutate evidence or generated project state use one fail-fast lock
+at `<realpath(project-root)>/.musubix/evidence/.writer-lock.json`. This includes
+init/upgrade writes, gate and evidence refresh, TDD/change/workflow/approval
+recording, trace/graph/knowledge/formal generation, and evidence merge/recovery.
+Complete owner metadata is staged, flushed, and published with a same-directory
+exclusive hard link, so the canonical lock is never visible as empty or partial.
+Filesystems that cannot provide this atomic publication fail with
+`EVIDENCE_WRITER_LOCK_ACQUIRE_FAILED`; there is no non-atomic fallback.
+
+Coordinated readers such as status, approval preparation/validation, trace and
+graph inspection, knowledge queries, TDD validation, attestation payload/verify,
+and merge dry-run fail immediately with `EVIDENCE_WRITER_LOCKED` when an
+unrelated owner exists. They do not wait or hold a read lease. Nested analysis
+operations in one owner async context reuse the lock; child processes and worker
+threads do not inherit that context. A configured command that recursively runs
+a musubix3 writer or coordinated reader against the same root therefore fails
+fast and must be removed from that command chain. Programs that write project
+files directly outside musubix3 are not coordinated.
+
+An abrupt exit can leave the lock. Run `evidence unlock --recover`; automatic
+recovery is currently Linux-only and requires matching hostname, boot identity,
+PID namespace, and a demonstrably absent owner PID. Live, PID-reused,
+cross-host, malformed, changed, unsupported, or indeterminate locks are left
+untouched with the exact path and inspection guidance. There is no force mode.
+The canonical lock and `.writer-lock.<transactionId>.json` staging files are
+ignored and excluded from generated inputs. After confirming no related process
+is active, an abandoned staging file may be removed by its exact path.
+
+Writer-lock checks precede merge-journal checks. When both an abandoned writer
+lock and pending merge journal exist, run `evidence unlock --recover` first and
+`evidence merge --recover` second. Unlock recovery never reads or modifies the
+merge journal.
+
+### Evidence-history merge
+
+`evidence merge` requires both roots to have individually valid `order.json`,
+`tdd.json`, and `changes.json`; `change-waivers.json` is optional. The incoming
+real path must be disjoint from the current root, remains read-only, and the
+current worktree must already contain each newly introduced incoming change
+document. Duplicate comparison canonicalizes JSON after removing only rebuilt
+sequence/order/hash-link fields. The result keeps base history first and then
+incoming relative order, so wall-clock `recordedAt` warnings can remain even
+when logical order is valid. If base Quality precedes an incoming Red or
+Implementation batch, merge the histories before recording Quality and record
+Quality again against the merged history.
+
+Use `--dry-run` for the same conflict, candidate, stale-waiver, and supersession
+analysis without writes. A successful merge can make waiver snapshots stale
+and inactive or select a later authoritative waiver; explicitly re-approve
+those waivers and rerun normal `gate` and `status`. Only `order.json`,
+`tdd.json`, `changes.json`, and `change-waivers.json` are merged. Workflow,
+approval, quality, formal, mutation, correspondence, performance, attestation,
+and native test-report evidence must use their existing regeneration or
+conflict-resolution workflows. `EVIDENCE_MERGE_CANDIDATE_INVALID` reports each
+underlying file/entity diagnostic. Use `--recover` after interruption; for
+`EVIDENCE_MERGE_RECOVERY_UNSAFE`, back up `.musubix/evidence`, restore or verify
+all four targets from a trusted source, quarantine merge-owned journal and
+temporary files, and rerun structural validation.
+
 `--changed` reads staged, unstaged, untracked and renamed/deleted paths from Git.
 It reports affected files but **conservatively recomputes all deterministic checks
 and executes all configured commands**. This avoids unsafe incremental skips.
@@ -837,11 +901,14 @@ Incomplete, failed, reused, out-of-order and stale bindings fail.
 Set `"workflow":{"mode":"strict"}` or pass `--strict` to additionally require
 valid JSON on every nonempty line, valid event timestamps, consistent one-to-one
 tool start/completion lifecycles, and exactly one successful final terminal
-event. Supported terminal formats are `result` with `exitCode: 0`, or the current
+state. Supported terminal formats are `result` with `exitCode: 0`, or the current
 Copilot CLI lifecycle format with one session UUID and a final
-`session.shutdown` whose `data.shutdownType` is `routine`. Mixed terminal
-formats, multiple session identities, abnormal shutdowns, and trailing events
-fail closed. Compatible mode alone accepts more than one transcript path;
+`session.shutdown` whose `data.shutdownType` is `routine`. The shutdown format
+also accepts one or more intermediate routine shutdowns when each is immediately
+followed by `session.resume`; `workflow-sanitize` retains those lifecycle
+boundaries. Mixed terminal formats, unmatched shutdown/resume transitions,
+multiple session identities, abnormal shutdowns, and trailing events fail
+closed. Compatible mode alone accepts more than one transcript path;
 supplied files are concatenated in ascending order of each file's earliest
 event timestamp (not command-line order), while each file's own internal
 event order is preserved untouched — this lets declarations whose invocation

package/dist/packages/analysis/src/adapters.d.ts

@@ -8,6 +8,6 @@ export interface AdapterInvocation {
 }
 export declare function mergeAdapterArgs(adapter: TestAdapter, configuredArgs: string[], invocationArgs: string[]): string[];
 export declare function adapterInvocation(adapter: TestAdapter, commandName: string, testId?: string, testPath?: string): AdapterInvocation;
-export declare function clearAdapterOutput(invocation: AdapterInvocation, absolutePath: string): Promise<void>;
-export declare function readAdapterOutput(invocation: AdapterInvocation, absolutePath: string, stdout: string): Promise<string | null>;
+export declare function clearAdapterOutput(invocation: AdapterInvocation, absolutePath: string, root?: string): Promise<void>;
+export declare function readAdapterOutput(invocation: AdapterInvocation, absolutePath: string, stdout: string, root?: string): Promise<string | null>;
 export declare function normalizeAdapterReport(adapter: TestAdapter, text: string, targetTestId?: string): MusubixTestReport;

package/dist/packages/analysis/src/adapters.js

@@ -1,6 +1,8 @@
-import { dirname, posix } from 'node:path';
+import { dirname, posix, sep } from 'node:path';
 import { mkdir, readdir, readFile, rm, unlink, writeFile } from 'node:fs/promises';
 import { exists } from './files.js';
+import { assertAbsoluteEvidencePathReady } from './evidence-merge-guard.js';
+import { assertCoordinatedEvidenceRead, assertEvidenceWriterOwned, withEvidenceWriterLock, } from './evidence-writer-lock.js';
 const goValueFlags = new Set([
     '-C', '-asmflags', '-bench', '-benchtime', '-blockprofile', '-blockprofilerate',
     '-buildmode', '-compiler',
@@ -151,7 +153,13 @@ export function adapterInvocation(adapter, commandName, testId, testPath) {
         source: 'directory',
     };
 }
-export async function clearAdapterOutput(invocation, absolutePath) {
+function adapterProjectRoot(absolutePath) {
+    const marker = `${sep}.musubix${sep}`;
+    const index = absolutePath.lastIndexOf(marker);
+    return index < 0 ? undefined : absolutePath.slice(0, index);
+}
+async function clearAdapterOutputUnlocked(invocation, absolutePath) {
+    await assertAbsoluteEvidencePathReady(absolutePath);
     if (await exists(absolutePath)) {
         if (invocation.source === 'directory')
             await rm(absolutePath, { recursive: true });
@@ -160,7 +168,17 @@ export async function clearAdapterOutput(invocation, absolutePath) {
     }
     await mkdir(invocation.source === 'directory' ? absolutePath : dirname(absolutePath), { recursive: true });
 }
-export async function readAdapterOutput(invocation, absolutePath, stdout) {
+export async function clearAdapterOutput(invocation, absolutePath, root) {
+    const projectRoot = root ?? adapterProjectRoot(absolutePath);
+    if (projectRoot === undefined)
+        return clearAdapterOutputUnlocked(invocation, absolutePath);
+    return withEvidenceWriterLock(projectRoot, 'adapter output clear', async () => {
+        await assertEvidenceWriterOwned(projectRoot);
+        await clearAdapterOutputUnlocked(invocation, absolutePath);
+    });
+}
+async function readAdapterOutputUnlocked(invocation, absolutePath, stdout) {
+    await assertAbsoluteEvidencePathReady(absolutePath);
     if (invocation.source === 'stdout') {
         if (stdout) {
             await mkdir(dirname(absolutePath), { recursive: true });
@@ -189,6 +207,18 @@ export async function readAdapterOutput(invocation, absolutePath, stdout) {
         return null;
     return (await Promise.all(entries.map((entry) => readFile(entry, 'utf8')))).join('\n');
 }
+export async function readAdapterOutput(invocation, absolutePath, stdout, root) {
+    const projectRoot = root ?? adapterProjectRoot(absolutePath);
+    if (projectRoot !== undefined && invocation.source === 'stdout' && stdout) {
+        return withEvidenceWriterLock(projectRoot, 'adapter output capture', async () => {
+            await assertEvidenceWriterOwned(projectRoot);
+            return readAdapterOutputUnlocked(invocation, absolutePath, stdout);
+        });
+    }
+    if (projectRoot !== undefined)
+        await assertCoordinatedEvidenceRead(projectRoot);
+    return readAdapterOutputUnlocked(invocation, absolutePath, stdout);
+}
 /* @id CODE-ADAPTER-PATTERN-RECOGNITION-001
  * @implements REQ-ADAPTER-PATTERN-RECOGNITION-001
  * @design DES-ADAPTER-PATTERN-RECOGNITION-001

package/dist/packages/analysis/src/adapters.js.map

@@ -1 +1 @@
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package/dist/packages/analysis/src/approval-record.js

@@ -1,6 +1,7 @@
 import { approvalManifest, approvalPath, domainsConfigured, requireApproval, requireDomainOption, resolveDomains, validateStageArtifacts, } from './approval.js';
 import { writeJson } from './files.js';
 import { runGate } from './gate.js';
+import { withEvidenceWriterLock } from './evidence-writer-lock.js';
 /** @id CODE-HUMAN-APPROVAL-GATES-002
  * @implements REQ-HUMAN-APPROVAL-GATES-001 REQ-HUMAN-APPROVAL-GATES-006
  * @design DES-APPROVAL-002 DES-APPROVAL-003
@@ -11,6 +12,9 @@ import { runGate } from './gate.js';
  * @design DES-APPROVAL-DOMAIN-SCOPING-004
  */
 export async function recordApproval(root, stage, approver, expectedArtifactSha256, config, domainName) {
+    return withEvidenceWriterLock(root, 'approval record', () => recordApprovalUnlocked(root, stage, approver, expectedArtifactSha256, config, domainName));
+}
+async function recordApprovalUnlocked(root, stage, approver, expectedArtifactSha256, config, domainName) {
     const normalizedApprover = approver.trim();
     if (!normalizedApprover || normalizedApprover.includes('\0')) {
         throw new Error('Approver must be a nonempty name without NUL bytes.');

package/dist/packages/analysis/src/approval-record.js.map

@@ -1 +1 @@
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package/dist/packages/analysis/src/change-evidence.d.ts

@@ -1,4 +1,4 @@
-import type { TddEvidence } from './tdd.js';
+import type { TddCycle, TddEvidence } from './tdd.js';
 export declare const changePhases: readonly ["impact", "requirements", "design", "red", "implementation", "green", "quality"];
 export type ChangePhase = typeof changePhases[number];
 export interface ChangeFingerprints {
@@ -50,7 +50,21 @@ export declare function loadChangeEvidence(root: string): Promise<ChangeEvidence
  * @design DES-CHANGE-REQUIREMENT-BATCHES-001
  */
 export declare function effectiveBatches(change: ChangeRecord): ChangeTddBatch[];
+/** @id CODE-CHANGE-REQUIREMENT-BATCHES-003
+ * @implements REQ-CHANGE-REQUIREMENT-BATCHES-005
+ * @design DES-CHANGE-REQUIREMENT-BATCHES-002
+ */
 export declare function batchFor(batches: ChangeTddBatch[], requirementId: string): ChangeTddBatch | undefined;
+export declare function currentRequirementIdsForBatch(batches: ChangeTddBatch[], batch: ChangeTddBatch, requirementIds: string[]): string[];
+export declare function currentTddOrderWindow(change: ChangeRecord, requirementId: string): {
+    after: number;
+    through: number;
+} | undefined;
+/** @id CODE-CHANGE-REQUIREMENT-BATCHES-004
+ * @implements REQ-CHANGE-REQUIREMENT-BATCHES-005
+ * @design DES-CHANGE-REQUIREMENT-BATCHES-002
+ */
+export declare function voidedCycleOrdersInCurrentWindow(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null, validlyVoided: ReadonlySet<TddCycle>): number[];
 /** @id CODE-CHANGE-EVIDENCE-WAIVER-014
  * @implements REQ-CHANGE-EVIDENCE-WAIVER-016
  * @design DES-CHANGE-EVIDENCE-WAIVER-001
@@ -66,10 +80,10 @@ export declare function batchKey(requirementIds: string[]): string;
 export declare function batchForKey(batches: ChangeTddBatch[], key: string): ChangeTddBatch | undefined;
 export declare function requirementsUnchangedCondition(change: ChangeRecord): boolean;
 export declare function designUnchangedCondition(change: ChangeRecord): boolean;
-export declare function hasValidTddCycle(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null): boolean;
-export declare function redUnprovenCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null): boolean;
-export declare function greenUnprovenCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null): boolean;
-export declare function completenessTddUnsatisfiedCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null): boolean;
+export declare function hasValidTddCycle(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null, validlyVoided?: ReadonlySet<TddCycle>): boolean;
+export declare function redUnprovenCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null, validlyVoided?: ReadonlySet<TddCycle>): boolean;
+export declare function greenUnprovenCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null, validlyVoided?: ReadonlySet<TddCycle>): boolean;
+export declare function completenessTddUnsatisfiedCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null, validlyVoided?: ReadonlySet<TddCycle>): boolean;
 /** @id CODE-CHANGE-EVIDENCE-WAIVER-016
  * @implements REQ-CHANGE-EVIDENCE-WAIVER-002
  * @design DES-CHANGE-EVIDENCE-WAIVER-001
@@ -84,7 +98,7 @@ export declare function recordMissingCondition(root: string, evidence: ChangeEvi
 export declare function phaseMissingCondition(change: ChangeRecord, phaseName: string): boolean;
 export declare function orderMigrationRequiredPhaseCondition(change: ChangeRecord, phaseName: string): boolean;
 export declare function orderMigrationRequiredBatchCondition(change: ChangeRecord, batchPhaseName: string, key: string): boolean;
-export declare function orderMigrationRequiredRequirementCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null): boolean;
+export declare function orderMigrationRequiredRequirementCondition(change: ChangeRecord, requirementId: string, tdd: TddEvidence | null, validlyVoided?: ReadonlySet<TddCycle>): boolean;
 export declare function testsUnchangedCondition(change: ChangeRecord, batch: ChangeTddBatch): boolean;
 export declare function implementationUnchangedCondition(batch: ChangeTddBatch): boolean;
 export declare function relevantImplementationUnchangedCondition(batch: ChangeTddBatch, requirementId: string): boolean;