musubix3 0.1.0 → 0.1.2

package/.github/plugin/marketplace.json

@@ -3,13 +3,13 @@
   "owner": { "name": "nahisaho" },
   "metadata": {
     "description": "GitHub Copilot CLI specification-driven development skills",
-    "version": "0.1.0"
+    "version": "0.1.2"
   },
   "plugins": [
     {
       "name": "musubix3",
       "source": ".",
-      "version": "0.1.0",
+      "version": "0.1.2",
       "description": "Evidence-driven SDD without duplicating native Copilot capabilities."
     }
   ]

package/.github/skills/sdd-implementation/SKILL.md

@@ -20,6 +20,9 @@ After the work, run `npx musubix3 workflow-record sdd-implementation complete
    Follow its native identity contract: pytest/Cargo use underscore names, Go
    uses a `TEST-*` subtest, and JUnit uses an exact `@Tag("TEST-*")` plus an
    underscore-form ID in the method name.
+   Run the repository formatter before recording Red. Formatting is part of the
+   test fingerprint: after Red, do not edit or reformat the authoritative test
+   until the matching Green has been recorded.
    Make the runner emit a fresh
    `musubix-json` report containing only the selected test (plus declared
    deterministic `operations` counters when applicable) and run
@@ -43,11 +46,15 @@ After the work, run `npx musubix3 workflow-record sdd-implementation complete
    Put annotations in the authoritative source and test files, including
    supported non-JS/TS files; never add a proxy file just to increase coverage.
    An annotation establishes a link, not proof that code or tests are correct.
-5. Run the project's actual focused tests/typecheck/build; fix failures.
+5. Before recording Red, run every configured `tdd.redPreflightCommands`
+   formatter/check and let musubix3 enforce that preflight. Then run the
+   project's actual focused tests/typecheck/build; fix failures.
    When mutation evidence is required, use the project's existing lightweight
    mutation mechanism to emit schema-v1 deterministic identities, requirement/
    test linkage, source/test SHA-256, operator/location, and killed status.
-   Never fabricate results or add a large mutation dependency.
+   Never fabricate results or add a large mutation dependency. Use
+   `npx musubix3 mutation doctor --json` to inspect locally available engines
+   and configuration recommendations.
 6. Regenerate `npx musubix3 trace build`, check `trace check --strict`, then
    `npx musubix3 gate --changed`. Configure real command/argument arrays first.
 7. Use Copilot's native review and security-review capabilities when appropriate.

package/.github/skills/sdd-quality/SKILL.md

@@ -8,7 +8,6 @@ Follow the user's input language (日本語 / English). Use native Copilot revie
 security review for their specialist reasoning; this skill does not replace them.
 After the work, run `npx musubix3 workflow-record sdd-quality complete --status
 completed` exactly once.
-
 1. Inspect `.musubix/config.json` and `.musubix/policy-baseline.json` before
    running commands. Only execute trusted project configuration. Commands are
    executable/argument arrays, not shell text. Never edit the baseline without
@@ -18,11 +17,19 @@ completed` exactly once.
    custom report or a built-in Vitest/Jest, pytest, Go test, Cargo or JUnit
    adapter. Require executable native adapter contracts in CI; JUnit targets use
    an exact `@Tag("TEST-*")`, and pytest requires `pytest-json-report`. Review
-   `requiredChecks`, coverage thresholds and architecture rules. Use strict
+   `requiredChecks`, `qualityProfile`, coverage thresholds and architecture rules.
+   Use `recommended` or `release` only when all profile requirements are
+   intentionally configured; profile validation never invents missing evidence. Use strict
    `codeGraph.mode` when unresolved computed module loading must block release,
    and ensure the trusted baseline prevents downgrading it. Configure a
    fresh structured `testReport` for `test-identities`. Do not weaken policy.
 3. Run `npx musubix3 gate --json` or `npx musubix3 gate --changed --json`.
+   `evidence refresh --json` runs the same fail-closed pipeline. If `input-stability` fails,
+   inspect its per-path added/modified/deleted diagnostics and stop generators
+   or formatters before rerunning. Standard dependency/build directories,
+   including manifest-scoped Cargo and Maven `target/` and conventional `.venv`
+   or `venv` roots with a regular `pyvenv.cfg`, are excluded; arbitrary source
+   directories and source-like generated inputs are not silently ignored.
    Changed mode reports Git changes and dependent files but conservatively runs
    all checks, including commands. It never treats unrun checks as successful.
    When `tdd` is required, confirm every command has test-scoped `tddArgs`, every
@@ -34,8 +41,9 @@ completed` exactly once.
    Treat workflow records as declarations until `workflow-verify` binds each
    completed declaration to one distinct completed Copilot Skill tool call.
    In strict mode require one final successful result, matching session UUID,
-   causal timestamps, bounded freshness, complete tool lifecycles and canonical
-   transcript hash. Ensure the baseline protects strict/session/freshness policy.
+   causal transcript order, policy-bounded concurrent-event clock skew, bounded
+   freshness, complete tool lifecycles and canonical transcript hash. Ensure the
+   baseline protects strict/session/freshness/event-skew policy.
    When `change-history` is required,
    confirm ordered checkpoints, chained TDD records, requirement-scoped Code
    Graph changes, exact CHANGE requirement enumeration, measurable Acceptance,
@@ -53,7 +61,8 @@ completed` exactly once.
    identities bound to must functional requirements, current source/test
    fingerprints, operator/location, authoritative tests, and killed results.
    Reject survived, skipped, duplicate, conflicting, stale, or unlinked mutants.
-   musubix3 validates evidence; it does not bundle a mutation engine.
+   Run `mutation doctor` for language-aware local probes and remediation;
+   musubix3 validates evidence and does not bundle a mutation engine.
    Missing required tools, commands, artifacts or evidence block readiness.
 5. Use native review/security-review as needed, recording their findings
    separately from machine evidence. Never fabricate review or test results.
@@ -66,4 +75,4 @@ completed` exactly once.
    Ensure the baseline protects CI-required mode, strict OIDC and key binding.
    Never store a private key or overstate OIDC as proof of arbitrary runner work.
 7. Run `npx musubix3 status --json`; stale evidence must be refreshed. Report
-   limitations and residual risks before handoff. No resident watcher or REPL.
+   limitations and residual risks before handoff; no resident watcher or REPL.

package/CHANGELOG.md

@@ -2,6 +2,38 @@
 
 ## Unreleased
 
+## 0.1.2 - 2026-09-07
+
+- Exclude conventional `.venv` and `venv` Python environments identified by a
+  regular `pyvenv.cfg` file from project snapshots and Code Graph indexing,
+  without allowing the marker to hide arbitrary source directories.
+- Add configurable `tdd.redPreflightCommands` so formatters and other plain
+  preflight commands complete before a Red test fingerprint is captured.
+- Add explicit `custom`, `minimal`, `recommended`, and `release` quality
+  profiles with fail-closed requirements for stronger profiles.
+- Accept bounded timestamp skew for causally ordered concurrent Copilot tool
+  events in strict workflow verification, with a policy-protected
+  `workflow.maxEventSkewMs` limit.
+- Add `mutation doctor` with language-aware local engine probes, attempted
+  commands, and actionable configuration recommendations.
+
+## 0.1.1 - 2026-09-07
+
+- Preserve fail-closed input-stability checks while reporting every added,
+  modified, or deleted path with before/after SHA-256 fingerprints.
+- Exclude standard Cargo and Maven `target/` build output from project input
+  snapshots without ignoring source-like generated inputs.
+- Merge legacy Cargo/Go `test` subcommands without producing duplicated commands
+  such as `cargo test test`, and reject conflicting adapter-owned report flags.
+- Discover JUnit XML recursively so nested multi-module report directories can
+  be normalized.
+- Add `evidence refresh` as an explicit entry point for the deterministic
+  evidence and quality-gate pipeline.
+- Extend `formal doctor` with every attempted solver command and actionable
+  installation/configuration recommendations.
+- Clarify Skill guidance to format tests before recording Red and to investigate
+  per-path input-stability diagnostics without weakening quality policy.
+
 ## 0.1.0 - 2026-09-07
 
 - Add SHA-pinned cross-platform CI, reproducible native/formal toolchains, and

package/README-ja.md

@@ -1,9 +1,11 @@
 # musubix3
 
-**リリース候補 · GitHub Copilot CLI 専用 · Node.js ≥20 · TypeScript · MIT**
+**最新公開版 v0.1.2 · GitHub Copilot CLI 専用 · Node.js ≥20 · TypeScript · MIT**
 
 [English](README.md)
 
+[musubix2 から musubix3 で変わったこと](MUSUBIX2-TO-MUSUBIX3.md)
+
 要求 → 憲章 → 設計・ADR → 実装 → 追跡可能性 → 品質根拠、という
 仕様駆動開発（SDD）を、8つの Skills と決定的な検証エンジンで支援します。
 形式的整合性検査、コンパイラによる依存解析、ローカル知識検索も含みます。
@@ -14,8 +16,25 @@ ID の接続や SAT 判定だけで、実装の正しさを保証するもので
 
 ## クイックスタート
 
-RC はローカルでビルド・パッケージ化できます。以下のレジストリ向けコマンドは、
-npm 公開後の利用例です。インストールテストは公開を行いません。
+対象プロジェクトで、公開済みパッケージを実行します。
+
+```sh
+npx musubix3@0.1.2 --version
+npx musubix3@0.1.2 init --dry-run
+npx musubix3@0.1.2 init
+copilot
+```
+
+バージョンを固定してプロジェクトへインストールする場合は、次を実行します。
+
+```sh
+npm install --save-dev --save-exact musubix3@0.1.2
+npx --no-install musubix3 --version
+npx --no-install musubix3 init --dry-run
+npx --no-install musubix3 init
+```
+
+リポジトリ自体をビルドする場合は、次を実行します。
 
 ```sh
 git clone https://github.com/nahisaho/musubix3.git
@@ -23,16 +42,6 @@ cd musubix3
 npm install
 npm run build
 node dist/packages/cli/src/main.js --help
-node dist/packages/cli/src/main.js init --root ../your-project --dry-run
-node dist/packages/cli/src/main.js init --root ../your-project
-```
-
-npm 公開後は、対象プロジェクトで実行します。
-
-```sh
-npx musubix3 init --dry-run
-npx musubix3 init
-copilot
 ```
 
 Copilot に「sdd-requirements でこの機能の要求を定義し、設計を計画して」と依頼します。
@@ -167,8 +176,10 @@ npx musubix3 status --json
 | `knowledge query <text> [--limit 10]` | TF-IDF/cosine のランキングと陳腐化情報 |
 | `formal generate <file> [--format both\|smt2\|lean]` | SHA-256付きの再現可能なsolver入力生成 |
 | `formal doctor` | Z3、Lean、`lake env lean` の存在とバージョン確認 |
+| `mutation doctor` | 言語別のローカルmutation engine確認と導入推奨 |
 | `formal check <file> [--solver auto\|none\|z3\|lean]` | 明示的なBoolean・条件・数値・時間・状態遷移モデルを検査 |
 | `model-correspondence validate` | Formal JSON→生成trace→正本passing testの証拠を再検証 |
+| `evidence refresh [--changed]` | 同じfail-closed gate pipelineで派生証拠を再生成 |
 | `mutation validate` | 要求scopeのschema-v1 killed-mutant証拠を再検証 |
 | `tdd red\|green\|refactor <TEST-ID> --requirement <REQ-ID> --command <name>` | 検証可能なTDDフェーズを実行・記録 |
 | `workflow-record <skill> <phase> --status <status>` | 自己申告のworkflow宣言を記録 |
@@ -317,6 +328,7 @@ version: 1.0.0
 {
   "schemaVersion": 1,
   "language": "auto",
+  "qualityProfile": "custom",
   "commands": [
     { "name": "typecheck", "command": "npm", "args": ["run", "typecheck"], "required": true, "timeoutMs": 120000 },
     {
@@ -332,10 +344,12 @@ version: 1.0.0
   "thresholds": { "design": 1, "implementation": 1, "tests": 1 },
   "formal": { "solver": "none", "minModeledFraction": 0, "timeoutMs": 12000 },
   "mutation": { "mode": "compatible" },
+  "tdd": { "redPreflightCommands": [] },
   "workflow": {
     "mode": "compatible",
     "maxAgeSeconds": 3600,
-    "maxFutureSkewSeconds": 60
+    "maxFutureSkewSeconds": 60,
+    "maxEventSkewMs": 1000
   },
   "attestation": {
     "mode": "local",
@@ -356,6 +370,15 @@ version: 1.0.0
 
 未知の設定キー、不正な閾値、重複コマンドはエラーです。
 glob は `*` / `**` / `?` に対応し、外部依存は `npm:` 接頭辞で表現します。
+`qualityProfile`の既定値は`custom`です。`minimal`はSDDの基本gate、
+`recommended`はstrict Code Graph、TDD、構造化test identityも要求し、
+`release`はformal、mutation、workflow、変更、performance、CI attestationを
+含む完全なrelease checkを要求します。不足設定や弱い設定を証拠で補ったことにはしません。
+`tdd.redPreflightCommands`にはformatter等のplain command名を指定でき、
+Redのtest fingerprintを取得する前に成功が必須です。
+通常ファイルの`pyvenv.cfg`を含む`.venv`と`venv`はsnapshotと
+Code Graphから除外されますが、任意のsource directoryにmarkerを置いても
+除外されません。
 `codeGraph.mode` の既定値は `compatible` で、未解決の計算された
 `import()` / `require()` は警告です。`strict` にするとグラフゲートを阻止する
 エラーになります。信頼済みbaselineが `strict` の場合、`compatible` への
@@ -376,7 +399,9 @@ command reportでpassしたことを要求します。欠落・改変・stale・
 
 `.musubix/policy-baseline.json` は必須チェック、閾値、アーキテクチャ、
 Formalポリシー、mutation mode、workflow strict/session/freshness、CI必須attestation、
-strict OIDC identity/key binding、必須コマンド名の最低条件です。弱体化は拒否され、
+strict OIDC identity/key binding、必須コマンド名の最低条件です。Red preflightを
+要求するbaselineは正規化済み`commands`定義も保持し、同名formatterへの
+すり替えを拒否します。弱体化は拒否され、
 変更ゲート中のbaseline変更には独立承認が必要です。CODEOWNERS等で保護してください。
 
 **信頼した設定だけを実行してください。** ゲートは環境変数を継承し、シェルを
@@ -456,6 +481,11 @@ strict検証は`workflow.maxAgeSeconds`と`workflow.maxFutureSkewSeconds`で
 terminal transcriptの古さと未来方向clock skewも制限します。
 並行eventはtimestamp順で出力されない場合があるため、全体sortではなくtool/resultの
 因果順序を検査します。
+gate実行中に入力が変わった場合、`input-stability`は追加・変更・削除された各pathと
+前後のSHA-256を報告します。Cargo/Mavenの標準`target/`は除外しますが、
+source相当の生成入力はfail-closedのままです。組込みadapterは対象test選択とreport引数を
+所有します。Cargo/Goの既存設定にある先頭`test`は安全に統合し、
+`--json-report`など競合するreport引数は早期拒否します。
 実行中の入力変更は失敗、その後の変更は `status` で stale になります。
 `maxAgeSeconds`より古いattestation、または`maxFutureSkewSeconds`を超えて未来の
 `issuedAt`は失敗します。local modeは未署名を明示します。

package/README.md

@@ -1,9 +1,11 @@
 # musubix3
 
-**Release candidate · GitHub Copilot CLI only · Node.js ≥20 · TypeScript · MIT**
+**Latest published v0.1.2 · GitHub Copilot CLI only · Node.js ≥20 · TypeScript · MIT**
 
 [日本語](README-ja.md)
 
+[What changed from musubix2 to musubix3 (Japanese)](MUSUBIX2-TO-MUSUBIX3.md)
+
 Specification-driven development (SDD) skills backed by deterministic checks:
 requirements → constitution → design/ADRs → implementation → traceability →
 quality evidence. Optional formal consistency, compiler dependency analysis and
@@ -16,8 +18,25 @@ or requirements are satisfiable.
 
 ## Quick start
 
-The RC can be built and packed locally; registry commands below assume the
-package has been published. No publication is performed by installation tests.
+Run the published package from the target project:
+
+```sh
+npx musubix3@0.1.2 --version
+npx musubix3@0.1.2 init --dry-run
+npx musubix3@0.1.2 init
+copilot
+```
+
+For a reproducible project-local installation:
+
+```sh
+npm install --save-dev --save-exact musubix3@0.1.2
+npx --no-install musubix3 --version
+npx --no-install musubix3 init --dry-run
+npx --no-install musubix3 init
+```
+
+To build the repository itself:
 
 ```sh
 git clone https://github.com/nahisaho/musubix3.git
@@ -25,16 +44,6 @@ cd musubix3
 npm install
 npm run build
 node dist/packages/cli/src/main.js --help
-node dist/packages/cli/src/main.js init --root ../your-project --dry-run
-node dist/packages/cli/src/main.js init --root ../your-project
-```
-
-Once available on npm, from your target project:
-
-```sh
-npx musubix3 init --dry-run
-npx musubix3 init
-copilot
 ```
 
 Ask Copilot: “Use sdd-change to add this feature and propagate it through the
@@ -175,8 +184,10 @@ validation/gate or requested solver failure, **2** usage, I/O or malformed confi
 | `knowledge query <text> [--limit 10]` | Deterministic TF-IDF/cosine results and staleness flag |
 | `formal generate <file> [--format both\|smt2\|lean]` | Reproducible solver inputs with SHA-256 evidence |
 | `formal doctor` | Probe Z3, Lean, and `lake env lean` availability and versions |
+| `mutation doctor` | Probe language-aware local mutation engines and show setup recommendations |
 | `formal check <file> [--solver auto\|none\|z3\|lean]` | Check the explicit Boolean/conditional/numeric/temporal/transition model |
 | `model-correspondence validate` | Revalidate Formal JSON → generated trace → authoritative passing test evidence |
+| `evidence refresh [--changed]` | Regenerate derived evidence through the same fail-closed gate pipeline |
 | `mutation validate` | Revalidate requirement-scoped schema-v1 killed-mutant evidence |
 | `tdd red\|green\|refactor <TEST-ID> --requirement <REQ-ID> --command <name>` | Execute and record a verified TDD phase |
 | `workflow-record <skill> <phase> --status <status>` | Record a compact self-reported workflow declaration |
@@ -318,6 +329,7 @@ Example `.musubix/config.json` (adapt command arguments to your own project):
 {
   "schemaVersion": 1,
   "language": "auto",
+  "qualityProfile": "custom",
   "commands": [
     { "name": "typecheck", "command": "npm", "args": ["run", "typecheck"], "required": true, "timeoutMs": 120000 },
     {
@@ -333,10 +345,12 @@ Example `.musubix/config.json` (adapt command arguments to your own project):
   "thresholds": { "design": 1, "implementation": 1, "tests": 1 },
   "formal": { "solver": "none", "minModeledFraction": 0, "timeoutMs": 12000 },
   "mutation": { "mode": "compatible" },
+  "tdd": { "redPreflightCommands": [] },
   "workflow": {
     "mode": "compatible",
     "maxAgeSeconds": 3600,
-    "maxFutureSkewSeconds": 60
+    "maxFutureSkewSeconds": 60,
+    "maxEventSkewMs": 1000
   },
   "attestation": {
     "mode": "local",
@@ -357,6 +371,16 @@ Example `.musubix/config.json` (adapt command arguments to your own project):
 
 Config is validated strictly; misspelled keys, invalid bounds and duplicate
 commands fail closed. Globs support `*`, `**`, `?`; external imports use `npm:`.
+`qualityProfile` is `custom` by default. `minimal` preserves the core SDD gate,
+`recommended` also requires strict Code Graph, TDD and structured test
+identities, and `release` requires the complete formal, mutation, workflow,
+change, performance and CI-attestation checks. Stronger profiles reject missing
+or weakened settings rather than silently filling in evidence.
+Use `tdd.redPreflightCommands` to reference plain configured formatter commands;
+they must pass before Red captures the authoritative test fingerprint.
+Conventional `.venv` and `venv` Python environments containing a regular
+`pyvenv.cfg` are excluded from source snapshots and Code Graph indexing.
+Arbitrary source directories containing that marker remain tracked.
 `codeGraph.mode` defaults to `compatible`, where unresolved computed
 `import()`/`require()` calls remain warnings. Set it to `strict` to make those
 diagnostics gate-blocking errors. A trusted strict policy baseline prevents
@@ -381,7 +405,9 @@ diagnostic codes are stable English; human status labels include Japanese.
 `.musubix/policy-baseline.json` records minimum required checks, coverage,
 architecture, formal policy, mutation mode, workflow strict/session/freshness settings,
 CI-required attestation and strict OIDC identity/key binding, and required
-command names. Weakening is rejected; changing the baseline in `gate --changed`
+command names. A baseline that requires TDD Red preflights must also include
+their normalized `commands` definitions, which prevents replacing a trusted
+formatter while retaining its name. Weakening is rejected; changing the baseline in `gate --changed`
 requires independent approval. Protect the baseline with review/CODEOWNERS.
 
 **Only run trusted configuration**: gates execute its commands with inherited
@@ -482,6 +508,12 @@ Strict verification also bounds terminal transcript age and future clock skew
 with `workflow.maxAgeSeconds` and `workflow.maxFutureSkewSeconds`.
 Unrelated concurrent events may be emitted out of timestamp order, so strict mode
 checks causal tool/result ordering rather than imposing a global timestamp sort.
+If project inputs change while a gate is running, `input-stability` reports each
+added, modified, or deleted path with before/after SHA-256 values. Standard
+Cargo/Maven `target/` output is excluded, but source-like generated inputs remain
+fail-closed. Built-in adapters own their targeting and report arguments. A
+legacy leading Cargo/Go `test` subcommand is merged safely; conflicting report
+flags such as `--json-report` are rejected.
 Changes during a gate fail input stability; later source/config changes make
 `status` stale. Attestations older than `maxAgeSeconds`, or issued farther in the
 future than `maxFutureSkewSeconds`, fail. Local mode explicitly reports unsigned

package/dist/packages/analysis/src/adapters.d.ts

@@ -6,6 +6,7 @@ export interface AdapterInvocation {
     reportPath: string;
     source: 'file' | 'directory' | 'stdout';
 }
+export declare function mergeAdapterArgs(adapter: TestAdapter, configuredArgs: string[], invocationArgs: string[]): string[];
 export declare function adapterInvocation(adapter: TestAdapter, commandName: string, testId?: string, testPath?: string): AdapterInvocation;
 export declare function clearAdapterOutput(invocation: AdapterInvocation, absolutePath: string): Promise<void>;
 export declare function readAdapterOutput(invocation: AdapterInvocation, absolutePath: string, stdout: string): Promise<string | null>;

package/dist/packages/analysis/src/adapters.js

@@ -1,6 +1,84 @@
-import { dirname } from 'node:path';
+import { dirname, posix } from 'node:path';
 import { mkdir, readdir, readFile, rm, unlink, writeFile } from 'node:fs/promises';
 import { exists } from './files.js';
+const goValueFlags = new Set([
+    '-C', '-asmflags', '-bench', '-benchtime', '-blockprofile', '-blockprofilerate',
+    '-buildmode', '-compiler',
+    '-count', '-covermode', '-coverpkg', '-coverprofile', '-cpu', '-cpuprofile', '-exec',
+    '-fuzz', '-fuzzminimizetime', '-fuzztime', '-gccgoflags', '-gcflags',
+    '-installsuffix', '-ldflags', '-list', '-memprofile', '-memprofilerate',
+    '-mod', '-modfile', '-mutexprofile',
+    '-mutexprofilefraction', '-o', '-outputdir', '-overlay', '-p', '-parallel',
+    '-pgo', '-pkgdir', '-run', '-shuffle', '-skip', '-tags', '-timeout', '-toolexec', '-trace',
+    '-vet',
+]);
+function partitionGoArgs(args) {
+    const flags = [];
+    const packages = [];
+    let directory;
+    for (let index = 0; index < args.length; index++) {
+        const arg = args[index];
+        if (arg === '-args') {
+            return { flags, packages, passthrough: args.slice(index + 1), ...(directory ? { directory } : {}) };
+        }
+        if (arg.startsWith('-')) {
+            flags.push(arg);
+            const flag = arg.split('=', 1)[0];
+            if (!arg.includes('=') && goValueFlags.has(flag) && args[index + 1] !== undefined) {
+                const value = args[++index];
+                flags.push(value);
+                if (flag === '-C')
+                    directory = value;
+            }
+            else if (flag === '-C' && arg.includes('=')) {
+                directory = arg.slice(arg.indexOf('=') + 1);
+            }
+        }
+        else {
+            packages.push(arg);
+        }
+    }
+    return { flags, packages, passthrough: [], ...(directory ? { directory } : {}) };
+}
+export function mergeAdapterArgs(adapter, configuredArgs, invocationArgs) {
+    if (adapter === 'cargo' && configuredArgs[0] === 'test' && invocationArgs[0] === 'test') {
+        const configuredSeparator = configuredArgs.indexOf('--');
+        const invocationSeparator = invocationArgs.indexOf('--');
+        const configuredCommandArgs = configuredSeparator < 0 ? configuredArgs.slice(1) : configuredArgs.slice(1, configuredSeparator);
+        const configuredHarnessArgs = configuredSeparator < 0 ? [] : configuredArgs.slice(configuredSeparator + 1);
+        const invocationCommandArgs = invocationSeparator < 0 ? invocationArgs.slice(1) : invocationArgs.slice(1, invocationSeparator);
+        const invocationHarnessArgs = invocationSeparator < 0 ? [] : invocationArgs.slice(invocationSeparator + 1);
+        return [
+            'test',
+            ...configuredCommandArgs,
+            ...invocationCommandArgs,
+            ...(configuredHarnessArgs.length || invocationHarnessArgs.length
+                ? ['--', ...configuredHarnessArgs, ...invocationHarnessArgs]
+                : []),
+        ];
+    }
+    if (adapter === 'go-test' && configuredArgs[0] === 'test' && invocationArgs[0] === 'test') {
+        const configured = partitionGoArgs(configuredArgs.slice(1));
+        const generatedPackage = invocationArgs[2];
+        const targeted = invocationArgs.includes('-run');
+        if (configured.directory && posix.isAbsolute(configured.directory)) {
+            throw new Error('The go-test adapter requires a relative -C directory so it can preserve targeted package scope.');
+        }
+        const targetedPackage = configured.directory && generatedPackage.startsWith('./')
+            ? posix.relative(configured.directory, generatedPackage.slice(2)) || '.'
+            : generatedPackage;
+        const packages = !targeted && configured.packages.length ? configured.packages : [targetedPackage];
+        return [
+            'test',
+            ...configured.flags,
+            '-json',
+            ...packages,
+            ...invocationArgs.slice(3),
+            ...(configured.passthrough.length ? ['-args', ...configured.passthrough] : []),
+        ];
+    }
+    return [...configuredArgs, ...invocationArgs];
+}
 function reportPath(commandName, testId, adapter) {
     const suffix = adapter === 'junit' ? '' : '.json';
     return testId
@@ -72,12 +150,21 @@ export async function readAdapterOutput(invocation, absolutePath, stdout) {
         return null;
     if (invocation.source === 'file')
         return readFile(absolutePath, 'utf8');
-    const entries = (await readdir(absolutePath, { withFileTypes: true }))
-        .filter((entry) => entry.isFile() && entry.name.endsWith('.xml'))
-        .sort((a, b) => a.name.localeCompare(b.name));
+    async function xmlFiles(directory) {
+        const found = [];
+        for (const entry of (await readdir(directory, { withFileTypes: true })).sort((a, b) => a.name.localeCompare(b.name))) {
+            const path = `${directory}/${entry.name}`;
+            if (entry.isDirectory())
+                found.push(...await xmlFiles(path));
+            else if (entry.isFile() && entry.name.endsWith('.xml'))
+                found.push(path);
+        }
+        return found;
+    }
+    const entries = await xmlFiles(absolutePath);
     if (!entries.length)
         return null;
-    return (await Promise.all(entries.map((entry) => readFile(`${absolutePath}/${entry.name}`, 'utf8')))).join('\n');
+    return (await Promise.all(entries.map((entry) => readFile(entry, 'utf8')))).join('\n');
 }
 function idOf(value) {
     if (typeof value !== 'string')

package/dist/packages/analysis/src/adapters.js.map

@@ -1 +1 @@
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package/dist/packages/analysis/src/config.d.ts

@@ -55,6 +55,7 @@ export interface WorkflowConfig {
     expectedSessionId?: string;
     maxAgeSeconds?: number;
     maxFutureSkewSeconds?: number;
+    maxEventSkewMs?: number;
 }
 export interface CodeGraphConfig {
     mode: 'compatible' | 'strict';
@@ -62,9 +63,14 @@ export interface CodeGraphConfig {
 export interface MutationConfig {
     mode: 'compatible' | 'strict';
 }
+export interface TddConfig {
+    redPreflightCommands: string[];
+}
+export type QualityProfile = 'custom' | 'minimal' | 'recommended' | 'release';
 export interface Config {
     schemaVersion: 1;
     language: 'auto' | 'en' | 'ja';
+    qualityProfile: QualityProfile;
     commands: CommandConfig[];
     requiredChecks: string[];
     thresholds: {
@@ -79,17 +85,21 @@ export interface Config {
     codeGraph: CodeGraphConfig;
     formal: FormalConfig;
     mutation: MutationConfig;
+    tdd: TddConfig;
     workflow: WorkflowConfig;
     attestation: AttestationConfig;
 }
 export interface PolicyBaseline {
     schemaVersion: 1;
+    qualityProfile: QualityProfile;
+    commands: CommandConfig[];
     requiredChecks: string[];
     thresholds: Config['thresholds'];
     architecture: Config['architecture'];
     codeGraph: Config['codeGraph'];
     formal: Pick<FormalConfig, 'solver' | 'minModeledFraction'>;
     mutation: MutationConfig;
+    tdd: TddConfig;
     workflow: WorkflowConfig;
     attestation: AttestationConfig;
     requiredCommands: string[];