musememory 1.3.0 → 1.4.0

package/dist/index.js

@@ -20,12 +20,14 @@ var __toESM = (mod, isNodeMode, target) => {
   }
   target = mod != null ? __create(__getProtoOf(mod)) : {};
   const to = isNodeMode || !mod || !mod.__esModule ? __defProp(target, "default", { value: mod, enumerable: true }) : target;
-  for (let key of __getOwnPropNames(mod))
-    if (!__hasOwnProp.call(to, key))
-      __defProp(to, key, {
-        get: __accessProp.bind(mod, key),
-        enumerable: true
-      });
+  if (mod && typeof mod === "object" || typeof mod === "function") {
+    for (let key of __getOwnPropNames(mod))
+      if (!__hasOwnProp.call(to, key))
+        __defProp(to, key, {
+          get: __accessProp.bind(mod, key),
+          enumerable: true
+        });
+  }
   if (canCache)
     cache.set(mod, to);
   return to;
@@ -4693,9 +4695,9 @@ var init_graph = () => {};
 // src/prompt.ts
 var exports_prompt = {};
 __export(exports_prompt, {
-  promptSingleSelect: () => promptSingleSelect,
+  parseSelectionInput: () => parseSelectionInput,
   promptMultiSelect: () => promptMultiSelect,
-  parseSelectionInput: () => parseSelectionInput
+  promptSingleSelect: () => promptSingleSelect
 });
 import { createInterface } from "node:readline";
 function parseSelectionInput(rawInput, options, defaultAll = true) {
@@ -5341,9 +5343,9 @@ var init_registry = __esm(() => {
 // src/agents/detect.ts
 var exports_detect = {};
 __export(exports_detect, {
-  findBinary: () => findBinary,
+  clearBinaryCache: () => clearBinaryCache,
   detectAgents: () => detectAgents,
-  clearBinaryCache: () => clearBinaryCache
+  findBinary: () => findBinary
 });
 import { existsSync as existsSync12, readFileSync as readFileSync10 } from "node:fs";
 import { join as join12 } from "node:path";
@@ -5438,16 +5440,16 @@ var init_detect2 = __esm(() => {
 // src/connect.ts
 var exports_connect = {};
 __export(exports_connect, {
-  disconnectSingleAgent: () => disconnectSingleAgent,
-  disconnectAllAgents: () => disconnectAllAgents,
-  connectOpenCode: () => connectOpenCode,
-  connectOpenClaw: () => connectOpenClaw,
-  connectHermes: () => connectHermes,
-  connectGoose: () => connectGoose,
-  connectCursor: () => connectCursor,
-  connectClaudeCode: () => connectClaudeCode,
+  ALL_MEMORY_TOOLS: () => ALL_MEMORY_TOOLS,
   connectAgent: () => connectAgent,
-  ALL_MEMORY_TOOLS: () => ALL_MEMORY_TOOLS
+  connectClaudeCode: () => connectClaudeCode,
+  connectCursor: () => connectCursor,
+  connectGoose: () => connectGoose,
+  connectHermes: () => connectHermes,
+  connectOpenClaw: () => connectOpenClaw,
+  connectOpenCode: () => connectOpenCode,
+  disconnectAllAgents: () => disconnectAllAgents,
+  disconnectSingleAgent: () => disconnectSingleAgent
 });
 import { existsSync as existsSync13, readFileSync as readFileSync11, writeFileSync as writeFileSync5, mkdirSync as mkdirSync5, statSync as statSync5 } from "node:fs";
 import { join as join13, dirname as dirname2 } from "node:path";
@@ -5851,7 +5853,7 @@ var init_connect = __esm(() => {
 });
 
 // node_modules/ajv/dist/compile/codegen/code.js
-var require_code = __commonJS((exports) => {
+var require_code = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.regexpCode = exports.getEsmExportName = exports.getProperty = exports.safeStringify = exports.stringify = exports.strConcat = exports.addCodeArg = exports.str = exports._ = exports.nil = exports._Code = exports.Name = exports.IDENTIFIER = exports._CodeOrName = undefined;
 
@@ -6005,7 +6007,7 @@ var require_code = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/codegen/scope.js
-var require_scope = __commonJS((exports) => {
+var require_scope = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.ValueScope = exports.ValueScopeName = exports.Scope = exports.varKinds = exports.UsedValueState = undefined;
   var code_1 = require_code();
@@ -6151,7 +6153,7 @@ var require_scope = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/codegen/index.js
-var require_codegen = __commonJS((exports) => {
+var require_codegen = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.or = exports.and = exports.not = exports.CodeGen = exports.operators = exports.varKinds = exports.ValueScopeName = exports.ValueScope = exports.Scope = exports.Name = exports.regexpCode = exports.stringify = exports.getProperty = exports.nil = exports.strConcat = exports.str = exports._ = undefined;
   var code_1 = require_code();
@@ -6861,7 +6863,7 @@ var require_codegen = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/util.js
-var require_util = __commonJS((exports) => {
+var require_util = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.checkStrictMode = exports.getErrorPath = exports.Type = exports.useFunc = exports.setEvaluated = exports.evaluatedPropsToName = exports.mergeEvaluated = exports.eachItem = exports.unescapeJsonPointer = exports.escapeJsonPointer = exports.escapeFragment = exports.unescapeFragment = exports.schemaRefOrVal = exports.schemaHasRulesButRef = exports.schemaHasRules = exports.checkUnknownRules = exports.alwaysValidSchema = exports.toHash = undefined;
   var codegen_1 = require_codegen();
@@ -7025,7 +7027,7 @@ var require_util = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/names.js
-var require_names = __commonJS((exports) => {
+var require_names = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var names = {
@@ -7050,7 +7052,7 @@ var require_names = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/errors.js
-var require_errors = __commonJS((exports) => {
+var require_errors = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.extendErrors = exports.resetErrorsCount = exports.reportExtraError = exports.reportError = exports.keyword$DataError = exports.keywordError = undefined;
   var codegen_1 = require_codegen();
@@ -7168,7 +7170,7 @@ var require_errors = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/validate/boolSchema.js
-var require_boolSchema = __commonJS((exports) => {
+var require_boolSchema = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.boolOrEmptySchema = exports.topBoolOrEmptySchema = undefined;
   var errors_1 = require_errors();
@@ -7216,7 +7218,7 @@ var require_boolSchema = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/rules.js
-var require_rules = __commonJS((exports) => {
+var require_rules = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.getRules = exports.isJSONType = undefined;
   var _jsonTypes = ["string", "number", "integer", "boolean", "null", "object", "array"];
@@ -7244,7 +7246,7 @@ var require_rules = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/validate/applicability.js
-var require_applicability = __commonJS((exports) => {
+var require_applicability = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.shouldUseRule = exports.shouldUseGroup = exports.schemaHasRulesForType = undefined;
   function schemaHasRulesForType({ schema: schema2, self }, type2) {
@@ -7264,7 +7266,7 @@ var require_applicability = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/validate/dataType.js
-var require_dataType = __commonJS((exports) => {
+var require_dataType = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.reportTypeError = exports.checkDataTypes = exports.checkDataType = exports.coerceAndCheckDataType = exports.getJSONTypes = exports.getSchemaTypes = exports.DataType = undefined;
   var rules_1 = require_rules();
@@ -7445,7 +7447,7 @@ var require_dataType = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/validate/defaults.js
-var require_defaults = __commonJS((exports) => {
+var require_defaults = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.assignDefaults = undefined;
   var codegen_1 = require_codegen();
@@ -7479,7 +7481,7 @@ var require_defaults = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/code.js
-var require_code2 = __commonJS((exports) => {
+var require_code2 = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.validateUnion = exports.validateArray = exports.usePattern = exports.callValidateCode = exports.schemaProperties = exports.allSchemaProperties = exports.noPropertyInData = exports.propertyInData = exports.isOwnProperty = exports.hasPropFunc = exports.reportMissingProp = exports.checkMissingProp = exports.checkReportMissingProp = undefined;
   var codegen_1 = require_codegen();
@@ -7608,7 +7610,7 @@ var require_code2 = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/validate/keyword.js
-var require_keyword = __commonJS((exports) => {
+var require_keyword = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.validateKeywordUsage = exports.validSchemaType = exports.funcKeywordCode = exports.macroKeywordCode = undefined;
   var codegen_1 = require_codegen();
@@ -7723,7 +7725,7 @@ var require_keyword = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/validate/subschema.js
-var require_subschema = __commonJS((exports) => {
+var require_subschema = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.extendSubschemaMode = exports.extendSubschemaData = exports.getSubschema = undefined;
   var codegen_1 = require_codegen();
@@ -7803,7 +7805,7 @@ var require_subschema = __commonJS((exports) => {
 });
 
 // node_modules/fast-deep-equal/index.js
-var require_fast_deep_equal = __commonJS((exports, module) => {
+var require_fast_deep_equal = __commonJS(function(exports, module) {
   module.exports = function equal(a, b) {
     if (a === b)
       return true;
@@ -7845,7 +7847,7 @@ var require_fast_deep_equal = __commonJS((exports, module) => {
 });
 
 // node_modules/json-schema-traverse/index.js
-var require_json_schema_traverse = __commonJS((exports, module) => {
+var require_json_schema_traverse = __commonJS(function(exports, module) {
   var traverse = module.exports = function(schema2, opts, cb) {
     if (typeof opts == "function") {
       cb = opts;
@@ -7928,7 +7930,7 @@ var require_json_schema_traverse = __commonJS((exports, module) => {
 });
 
 // node_modules/ajv/dist/compile/resolve.js
-var require_resolve = __commonJS((exports) => {
+var require_resolve = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.getSchemaRefs = exports.resolveUrl = exports.normalizeId = exports._getFullPath = exports.getFullPath = exports.inlineRef = undefined;
   var util_1 = require_util();
@@ -8081,7 +8083,7 @@ var require_resolve = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/validate/index.js
-var require_validate = __commonJS((exports) => {
+var require_validate = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.getData = exports.KeywordCxt = exports.validateFunctionCode = undefined;
   var boolSchema_1 = require_boolSchema();
@@ -8586,7 +8588,7 @@ var require_validate = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/runtime/validation_error.js
-var require_validation_error = __commonJS((exports) => {
+var require_validation_error = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
 
   class ValidationError extends Error {
@@ -8600,7 +8602,7 @@ var require_validation_error = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/ref_error.js
-var require_ref_error = __commonJS((exports) => {
+var require_ref_error = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var resolve_1 = require_resolve();
 
@@ -8615,7 +8617,7 @@ var require_ref_error = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/compile/index.js
-var require_compile = __commonJS((exports) => {
+var require_compile = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.resolveSchema = exports.getCompilingSchema = exports.resolveRef = exports.compileSchema = exports.SchemaEnv = undefined;
   var codegen_1 = require_codegen();
@@ -8836,7 +8838,7 @@ var require_compile = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/refs/data.json
-var require_data = __commonJS((exports, module) => {
+var require_data = __commonJS(function(exports, module) {
   module.exports = {
     $id: "https://raw.githubusercontent.com/ajv-validator/ajv/master/lib/refs/data.json#",
     description: "Meta-schema for $data reference (JSON AnySchema extension proposal)",
@@ -8853,7 +8855,7 @@ var require_data = __commonJS((exports, module) => {
 });
 
 // node_modules/fast-uri/lib/utils.js
-var require_utils = __commonJS((exports, module) => {
+var require_utils = __commonJS(function(exports, module) {
   var isUUID = RegExp.prototype.test.bind(/^[\da-f]{8}-[\da-f]{4}-[\da-f]{4}-[\da-f]{4}-[\da-f]{12}$/iu);
   var isIPv4 = RegExp.prototype.test.bind(/^(?:(?:25[0-5]|2[0-4]\d|1\d{2}|[1-9]\d|\d)\.){3}(?:25[0-5]|2[0-4]\d|1\d{2}|[1-9]\d|\d)$/u);
   var isHexPair = RegExp.prototype.test.bind(/^[\da-f]{2}$/iu);
@@ -9164,7 +9166,7 @@ var require_utils = __commonJS((exports, module) => {
 });
 
 // node_modules/fast-uri/lib/schemes.js
-var require_schemes = __commonJS((exports, module) => {
+var require_schemes = __commonJS(function(exports, module) {
   var { isUUID } = require_utils();
   var URN_REG = /([\da-z][\d\-a-z]{0,31}):((?:[\w!$'()*+,\-.:;=@]|%[\da-f]{2})+)/iu;
   var supportedSchemeNames = [
@@ -9338,7 +9340,7 @@ var require_schemes = __commonJS((exports, module) => {
 });
 
 // node_modules/fast-uri/index.js
-var require_fast_uri = __commonJS((exports, module) => {
+var require_fast_uri = __commonJS(function(exports, module) {
   var { normalizeIPv6, removeDotSegments, recomposeAuthority, normalizePercentEncoding, normalizePathEncoding, escapePreservingEscapes, reescapeHostDelimiters, isIPv4, nonSimpleDomain } = require_utils();
   var { SCHEMES, getSchemeHandler } = require_schemes();
   function normalize(uri, options) {
@@ -9646,7 +9648,7 @@ var require_fast_uri = __commonJS((exports, module) => {
 });
 
 // node_modules/ajv/dist/runtime/uri.js
-var require_uri = __commonJS((exports) => {
+var require_uri = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var uri = require_fast_uri();
   uri.code = 'require("ajv/dist/runtime/uri").default';
@@ -9654,7 +9656,7 @@ var require_uri = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/core.js
-var require_core = __commonJS((exports) => {
+var require_core = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.CodeGen = exports.Name = exports.nil = exports.stringify = exports.str = exports._ = exports.KeywordCxt = undefined;
   var validate_1 = require_validate();
@@ -10247,7 +10249,7 @@ var require_core = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/core/id.js
-var require_id = __commonJS((exports) => {
+var require_id = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var def = {
     keyword: "id",
@@ -10259,7 +10261,7 @@ var require_id = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/core/ref.js
-var require_ref = __commonJS((exports) => {
+var require_ref = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.callRef = exports.getValidate = undefined;
   var ref_error_1 = require_ref_error();
@@ -10378,7 +10380,7 @@ var require_ref = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/core/index.js
-var require_core2 = __commonJS((exports) => {
+var require_core2 = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var id_1 = require_id();
   var ref_1 = require_ref();
@@ -10396,7 +10398,7 @@ var require_core2 = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/limitNumber.js
-var require_limitNumber = __commonJS((exports) => {
+var require_limitNumber = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var ops = codegen_1.operators;
@@ -10425,7 +10427,7 @@ var require_limitNumber = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/multipleOf.js
-var require_multipleOf = __commonJS((exports) => {
+var require_multipleOf = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var error = {
@@ -10450,7 +10452,7 @@ var require_multipleOf = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/runtime/ucs2length.js
-var require_ucs2length = __commonJS((exports) => {
+var require_ucs2length = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   function ucs2length(str2) {
     const len = str2.length;
@@ -10473,7 +10475,7 @@ var require_ucs2length = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/limitLength.js
-var require_limitLength = __commonJS((exports) => {
+var require_limitLength = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -10502,7 +10504,7 @@ var require_limitLength = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/pattern.js
-var require_pattern = __commonJS((exports) => {
+var require_pattern = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var code_1 = require_code2();
   var util_1 = require_util();
@@ -10536,7 +10538,7 @@ var require_pattern = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/limitProperties.js
-var require_limitProperties = __commonJS((exports) => {
+var require_limitProperties = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var error = {
@@ -10562,7 +10564,7 @@ var require_limitProperties = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/required.js
-var require_required = __commonJS((exports) => {
+var require_required = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var code_1 = require_code2();
   var codegen_1 = require_codegen();
@@ -10641,7 +10643,7 @@ var require_required = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/limitItems.js
-var require_limitItems = __commonJS((exports) => {
+var require_limitItems = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var error = {
@@ -10667,7 +10669,7 @@ var require_limitItems = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/runtime/equal.js
-var require_equal = __commonJS((exports) => {
+var require_equal = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var equal = require_fast_deep_equal();
   equal.code = 'require("ajv/dist/runtime/equal").default';
@@ -10675,7 +10677,7 @@ var require_equal = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/uniqueItems.js
-var require_uniqueItems = __commonJS((exports) => {
+var require_uniqueItems = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var dataType_1 = require_dataType();
   var codegen_1 = require_codegen();
@@ -10739,7 +10741,7 @@ var require_uniqueItems = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/const.js
-var require_const = __commonJS((exports) => {
+var require_const = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -10765,7 +10767,7 @@ var require_const = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/enum.js
-var require_enum = __commonJS((exports) => {
+var require_enum = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -10811,7 +10813,7 @@ var require_enum = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/validation/index.js
-var require_validation = __commonJS((exports) => {
+var require_validation = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var limitNumber_1 = require_limitNumber();
   var multipleOf_1 = require_multipleOf();
@@ -10841,7 +10843,7 @@ var require_validation = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/additionalItems.js
-var require_additionalItems = __commonJS((exports) => {
+var require_additionalItems = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.validateAdditionalItems = undefined;
   var codegen_1 = require_codegen();
@@ -10891,7 +10893,7 @@ var require_additionalItems = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/items.js
-var require_items = __commonJS((exports) => {
+var require_items = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.validateTuple = undefined;
   var codegen_1 = require_codegen();
@@ -10945,7 +10947,7 @@ var require_items = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/prefixItems.js
-var require_prefixItems = __commonJS((exports) => {
+var require_prefixItems = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var items_1 = require_items();
   var def = {
@@ -10959,7 +10961,7 @@ var require_prefixItems = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/items2020.js
-var require_items2020 = __commonJS((exports) => {
+var require_items2020 = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -10991,7 +10993,7 @@ var require_items2020 = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/contains.js
-var require_contains = __commonJS((exports) => {
+var require_contains = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -11082,7 +11084,7 @@ var require_contains = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/dependencies.js
-var require_dependencies = __commonJS((exports) => {
+var require_dependencies = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.validateSchemaDeps = exports.validatePropertyDeps = exports.error = undefined;
   var codegen_1 = require_codegen();
@@ -11167,7 +11169,7 @@ var require_dependencies = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/propertyNames.js
-var require_propertyNames = __commonJS((exports) => {
+var require_propertyNames = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -11207,7 +11209,7 @@ var require_propertyNames = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/additionalProperties.js
-var require_additionalProperties = __commonJS((exports) => {
+var require_additionalProperties = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var code_1 = require_code2();
   var codegen_1 = require_codegen();
@@ -11310,7 +11312,7 @@ var require_additionalProperties = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/properties.js
-var require_properties = __commonJS((exports) => {
+var require_properties = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var validate_1 = require_validate();
   var code_1 = require_code2();
@@ -11365,7 +11367,7 @@ var require_properties = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/patternProperties.js
-var require_patternProperties = __commonJS((exports) => {
+var require_patternProperties = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var code_1 = require_code2();
   var codegen_1 = require_codegen();
@@ -11436,7 +11438,7 @@ var require_patternProperties = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/not.js
-var require_not = __commonJS((exports) => {
+var require_not = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var util_1 = require_util();
   var def = {
@@ -11464,7 +11466,7 @@ var require_not = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/anyOf.js
-var require_anyOf = __commonJS((exports) => {
+var require_anyOf = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var code_1 = require_code2();
   var def = {
@@ -11478,7 +11480,7 @@ var require_anyOf = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/oneOf.js
-var require_oneOf = __commonJS((exports) => {
+var require_oneOf = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -11533,7 +11535,7 @@ var require_oneOf = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/allOf.js
-var require_allOf = __commonJS((exports) => {
+var require_allOf = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var util_1 = require_util();
   var def = {
@@ -11557,7 +11559,7 @@ var require_allOf = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/if.js
-var require_if = __commonJS((exports) => {
+var require_if = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var util_1 = require_util();
@@ -11623,7 +11625,7 @@ var require_if = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/thenElse.js
-var require_thenElse = __commonJS((exports) => {
+var require_thenElse = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var util_1 = require_util();
   var def = {
@@ -11638,7 +11640,7 @@ var require_thenElse = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/applicator/index.js
-var require_applicator = __commonJS((exports) => {
+var require_applicator = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var additionalItems_1 = require_additionalItems();
   var prefixItems_1 = require_prefixItems();
@@ -11681,7 +11683,7 @@ var require_applicator = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/format/format.js
-var require_format = __commonJS((exports) => {
+var require_format = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var error = {
@@ -11768,7 +11770,7 @@ var require_format = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/format/index.js
-var require_format2 = __commonJS((exports) => {
+var require_format2 = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var format_1 = require_format();
   var format = [format_1.default];
@@ -11776,7 +11778,7 @@ var require_format2 = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/metadata.js
-var require_metadata = __commonJS((exports) => {
+var require_metadata = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.contentVocabulary = exports.metadataVocabulary = undefined;
   exports.metadataVocabulary = [
@@ -11796,7 +11798,7 @@ var require_metadata = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/draft7.js
-var require_draft7 = __commonJS((exports) => {
+var require_draft7 = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var core_1 = require_core2();
   var validation_1 = require_validation();
@@ -11815,7 +11817,7 @@ var require_draft7 = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/discriminator/types.js
-var require_types = __commonJS((exports) => {
+var require_types = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.DiscrError = undefined;
   var DiscrError;
@@ -11826,7 +11828,7 @@ var require_types = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/vocabularies/discriminator/index.js
-var require_discriminator = __commonJS((exports) => {
+var require_discriminator = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var codegen_1 = require_codegen();
   var types_1 = require_types();
@@ -11928,7 +11930,7 @@ var require_discriminator = __commonJS((exports) => {
 });
 
 // node_modules/ajv/dist/refs/json-schema-draft-07.json
-var require_json_schema_draft_07 = __commonJS((exports, module) => {
+var require_json_schema_draft_07 = __commonJS(function(exports, module) {
   module.exports = {
     $schema: "http://json-schema.org/draft-07/schema#",
     $id: "http://json-schema.org/draft-07/schema#",
@@ -12083,7 +12085,7 @@ var require_json_schema_draft_07 = __commonJS((exports, module) => {
 });
 
 // node_modules/ajv/dist/ajv.js
-var require_ajv = __commonJS((exports, module) => {
+var require_ajv = __commonJS(function(exports, module) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.MissingRefError = exports.ValidationError = exports.CodeGen = exports.Name = exports.nil = exports.stringify = exports.str = exports._ = exports.KeywordCxt = exports.Ajv = undefined;
   var core_1 = require_core();
@@ -12593,8 +12595,8 @@ var init_schema = __esm(() => {
 // src/doctor.ts
 var exports_doctor = {};
 __export(exports_doctor, {
-  runDoctor: () => runDoctor,
-  printDoctorReport: () => printDoctorReport
+  printDoctorReport: () => printDoctorReport,
+  runDoctor: () => runDoctor
 });
 import { existsSync as existsSync15, statSync as statSync6, readFileSync as readFileSync14 } from "node:fs";
 import { join as join16 } from "node:path";
@@ -12842,6 +12844,7 @@ var init_snapshot = __esm(() => {
 // src/ui.ts
 var exports_ui = {};
 __export(exports_ui, {
+  exportStandaloneHtml: () => exportStandaloneHtml,
   startUiServer: () => startUiServer
 });
 import { createServer } from "node:http";
@@ -12917,6 +12920,13 @@ function startUiServer(opts) {
         }
         return;
       }
+      if (pathname === "/api/export-html" && req.method === "GET") {
+        const html = exportStandaloneHtml(opts.store);
+        res.setHeader("Content-Disposition", 'attachment; filename="musememory-graph.html"');
+        res.writeHead(200, { "Content-Type": "text/html; charset=utf-8" });
+        res.end(html);
+        return;
+      }
       if (pathname === "/" || pathname === "/index.html") {
         res.writeHead(200, { "Content-Type": "text/html; charset=utf-8" });
         res.end(EMBEDDED_HTML);
@@ -12957,6 +12967,12 @@ function parseJsonBody(req) {
     req.on("error", reject2);
   });
 }
+function exportStandaloneHtml(store) {
+  const memories = list(store);
+  const script = `<script>window.STANDALONE_DATA = ${JSON.stringify(memories)};</script>`;
+  return EMBEDDED_HTML.replace("</head>", `${script}
+</head>`);
+}
 var EMBEDDED_HTML = `<!DOCTYPE html>
 <html lang="en">
 <head>
@@ -13091,8 +13107,12 @@ var EMBEDDED_HTML = `<!DOCTYPE html>
 
     async function loadData() {
       try {
-        const res = await fetch('/api/memories');
-        allMemories = await res.json();
+        if (window.STANDALONE_DATA) {
+          allMemories = window.STANDALONE_DATA;
+        } else {
+          const res = await fetch('/api/memories');
+          allMemories = await res.json();
+        }
         renderList();
         initGraph();
         buildClusterFilters();
@@ -13263,20 +13283,96 @@ var EMBEDDED_HTML = `<!DOCTYPE html>
       simAlpha = 1; // re-energize layout after data changes
     }
 
+    function buildQuadtree(nodes) {
+      let minX = Infinity, maxX = -Infinity, minY = Infinity, maxY = -Infinity;
+      for (const n of nodes) {
+        if (n.x < minX) minX = n.x;
+        if (n.x > maxX) maxX = n.x;
+        if (n.y < minY) minY = n.y;
+        if (n.y > maxY) maxY = n.y;
+      }
+      const size = Math.max(maxX - minX, maxY - minY, 100);
+      const cx = (minX + maxX) / 2;
+      const cy = (minY + maxY) / 2;
+
+      function createQuad(x, y, s) {
+        return { x, y, size: s, mass: 0, cx: 0, cy: 0, cz: 0, body: null, children: null };
+      }
+      const root = createQuad(cx, cy, size);
+
+      function insert(tree, body) {
+        if (tree.mass === 0) {
+          tree.body = body;
+          tree.cx = body.x; tree.cy = body.y; tree.cz = body.z;
+          tree.mass = 1;
+          return;
+        }
+        if (!tree.children) {
+          const b2 = tree.body;
+          tree.body = null;
+          const hs = tree.size / 2;
+          const qs = tree.size / 4;
+          tree.children = [
+            createQuad(tree.x - qs, tree.y - qs, hs),
+            createQuad(tree.x + qs, tree.y - qs, hs),
+            createQuad(tree.x - qs, tree.y + qs, hs),
+            createQuad(tree.x + qs, tree.y + qs, hs)
+          ];
+          if (b2) insertChild(tree, b2);
+        }
+        tree.cx = (tree.cx * tree.mass + body.x) / (tree.mass + 1);
+        tree.cy = (tree.cy * tree.mass + body.y) / (tree.mass + 1);
+        tree.cz = (tree.cz * tree.mass + body.z) / (tree.mass + 1);
+        tree.mass++;
+        insertChild(tree, body);
+      }
+
+      function insertChild(tree, body) {
+        const idx = (body.x >= tree.x ? 1 : 0) + (body.y >= tree.y ? 2 : 0);
+        insert(tree.children[idx], body);
+      }
+
+      for (const n of nodes) insert(root, n);
+      return root;
+    }
+
+    function applyRepulsionBarnesHut(nodes, tree, theta, alpha) {
+      for (const a of nodes) computeForce(a, tree);
+
+      function computeForce(a, node) {
+        if (node.mass === 0 || node.body === a) return;
+        let dx = a.x - node.cx, dy = a.y - node.cy, dz = a.z - node.cz;
+        let dist2 = dx * dx + dy * dy + dz * dz + 0.01;
+        let dist = Math.sqrt(dist2);
+        if (node.children && (node.size / dist) > theta) {
+          for (const child of node.children) computeForce(a, child);
+        } else {
+          const force = (2400 * alpha * node.mass) / dist2;
+          dx /= dist; dy /= dist; dz /= dist;
+          a.x += dx * force; a.y += dy * force; a.z += dz * force;
+        }
+      }
+    }
+
     function simulateStep() {
       if (nodes3d.length === 0) return;
       const alpha = simAlpha;
-      // Pairwise repulsion (O(n^2) — fine at memory-store scale)
-      for (let i = 0; i < nodes3d.length; i++) {
-        for (let j = i + 1; j < nodes3d.length; j++) {
-          const a = nodes3d[i], b = nodes3d[j];
-          let dx = a.x - b.x, dy = a.y - b.y, dz = a.z - b.z;
-          let dist2 = dx * dx + dy * dy + dz * dz + 0.01;
-          const force = (2400 * alpha) / dist2;
-          const dist = Math.sqrt(dist2);
-          dx /= dist; dy /= dist; dz /= dist;
-          a.x += dx * force; a.y += dy * force; a.z += dz * force;
-          b.x -= dx * force; b.y -= dy * force; b.z -= dz * force;
+      if (nodes3d.length > 50) {
+        const qtree = buildQuadtree(nodes3d);
+        applyRepulsionBarnesHut(nodes3d, qtree, 0.6, alpha);
+      } else {
+        // Pairwise repulsion (O(n^2) for small graphs)
+        for (let i = 0; i < nodes3d.length; i++) {
+          for (let j = i + 1; j < nodes3d.length; j++) {
+            const a = nodes3d[i], b = nodes3d[j];
+            let dx = a.x - b.x, dy = a.y - b.y, dz = a.z - b.z;
+            let dist2 = dx * dx + dy * dy + dz * dz + 0.01;
+            const force = (2400 * alpha) / dist2;
+            const dist = Math.sqrt(dist2);
+            dx /= dist; dy /= dist; dz /= dist;
+            a.x += dx * force; a.y += dy * force; a.z += dz * force;
+            b.x -= dx * force; b.y -= dy * force; b.z -= dz * force;
+          }
         }
       }
       // Springs along graph edges
@@ -13566,69 +13662,69 @@ var init_core2 = __esm(() => {
 // node_modules/zod/v4/core/util.js
 var exports_util = {};
 __export(exports_util, {
-  unwrapMessage: () => unwrapMessage,
-  uint8ArrayToHex: () => uint8ArrayToHex,
-  uint8ArrayToBase64url: () => uint8ArrayToBase64url,
-  uint8ArrayToBase64: () => uint8ArrayToBase64,
-  stringifyPrimitive: () => stringifyPrimitive,
-  slugify: () => slugify,
-  shallowClone: () => shallowClone,
-  safeExtend: () => safeExtend,
-  required: () => required,
-  randomString: () => randomString,
-  propertyKeyTypes: () => propertyKeyTypes,
-  promiseAllObject: () => promiseAllObject,
-  primitiveTypes: () => primitiveTypes,
-  prefixIssues: () => prefixIssues,
-  pick: () => pick,
-  partial: () => partial,
-  parsedType: () => parsedType,
-  optionalKeys: () => optionalKeys,
-  omit: () => omit,
-  objectClone: () => objectClone,
-  numKeys: () => numKeys,
-  nullish: () => nullish,
-  normalizeParams: () => normalizeParams,
-  mergeDefs: () => mergeDefs,
-  merge: () => merge2,
-  jsonStringifyReplacer: () => jsonStringifyReplacer,
-  joinValues: () => joinValues,
-  issue: () => issue,
-  isPlainObject: () => isPlainObject,
-  isObject: () => isObject,
-  hexToUint8Array: () => hexToUint8Array,
-  getSizableOrigin: () => getSizableOrigin,
-  getParsedType: () => getParsedType,
-  getLengthableOrigin: () => getLengthableOrigin,
-  getEnumValues: () => getEnumValues,
-  getElementAtPath: () => getElementAtPath,
-  floatSafeRemainder: () => floatSafeRemainder,
-  finalizeIssue: () => finalizeIssue,
-  extend: () => extend,
-  explicitlyAborted: () => explicitlyAborted,
-  escapeRegex: () => escapeRegex,
-  esc: () => esc,
-  defineLazy: () => defineLazy,
-  createTransparentProxy: () => createTransparentProxy,
-  cloneDef: () => cloneDef,
-  clone: () => clone,
-  cleanRegex: () => cleanRegex,
-  cleanEnum: () => cleanEnum,
-  captureStackTrace: () => captureStackTrace,
-  cached: () => cached,
-  base64urlToUint8Array: () => base64urlToUint8Array,
-  base64ToUint8Array: () => base64ToUint8Array,
-  assignProp: () => assignProp,
-  assertNotEqual: () => assertNotEqual,
-  assertNever: () => assertNever,
-  assertIs: () => assertIs,
-  assertEqual: () => assertEqual,
-  assert: () => assert,
-  allowsEval: () => allowsEval,
-  aborted: () => aborted,
-  NUMBER_FORMAT_RANGES: () => NUMBER_FORMAT_RANGES,
+  BIGINT_FORMAT_RANGES: () => BIGINT_FORMAT_RANGES,
   Class: () => Class,
-  BIGINT_FORMAT_RANGES: () => BIGINT_FORMAT_RANGES
+  NUMBER_FORMAT_RANGES: () => NUMBER_FORMAT_RANGES,
+  aborted: () => aborted,
+  allowsEval: () => allowsEval,
+  assert: () => assert,
+  assertEqual: () => assertEqual,
+  assertIs: () => assertIs,
+  assertNever: () => assertNever,
+  assertNotEqual: () => assertNotEqual,
+  assignProp: () => assignProp,
+  base64ToUint8Array: () => base64ToUint8Array,
+  base64urlToUint8Array: () => base64urlToUint8Array,
+  cached: () => cached,
+  captureStackTrace: () => captureStackTrace,
+  cleanEnum: () => cleanEnum,
+  cleanRegex: () => cleanRegex,
+  clone: () => clone,
+  cloneDef: () => cloneDef,
+  createTransparentProxy: () => createTransparentProxy,
+  defineLazy: () => defineLazy,
+  esc: () => esc,
+  escapeRegex: () => escapeRegex,
+  explicitlyAborted: () => explicitlyAborted,
+  extend: () => extend,
+  finalizeIssue: () => finalizeIssue,
+  floatSafeRemainder: () => floatSafeRemainder,
+  getElementAtPath: () => getElementAtPath,
+  getEnumValues: () => getEnumValues,
+  getLengthableOrigin: () => getLengthableOrigin,
+  getParsedType: () => getParsedType,
+  getSizableOrigin: () => getSizableOrigin,
+  hexToUint8Array: () => hexToUint8Array,
+  isObject: () => isObject,
+  isPlainObject: () => isPlainObject,
+  issue: () => issue,
+  joinValues: () => joinValues,
+  jsonStringifyReplacer: () => jsonStringifyReplacer,
+  merge: () => merge2,
+  mergeDefs: () => mergeDefs,
+  normalizeParams: () => normalizeParams,
+  nullish: () => nullish,
+  numKeys: () => numKeys,
+  objectClone: () => objectClone,
+  omit: () => omit,
+  optionalKeys: () => optionalKeys,
+  parsedType: () => parsedType,
+  partial: () => partial,
+  pick: () => pick,
+  prefixIssues: () => prefixIssues,
+  primitiveTypes: () => primitiveTypes,
+  promiseAllObject: () => promiseAllObject,
+  propertyKeyTypes: () => propertyKeyTypes,
+  randomString: () => randomString,
+  required: () => required,
+  safeExtend: () => safeExtend,
+  shallowClone: () => shallowClone,
+  slugify: () => slugify,
+  stringifyPrimitive: () => stringifyPrimitive,
+  uint8ArrayToBase64: () => uint8ArrayToBase64,
+  uint8ArrayToBase64url: () => uint8ArrayToBase64url,
+  uint8ArrayToHex: () => uint8ArrayToHex,
+  unwrapMessage: () => unwrapMessage
 });
 function assertEqual(val) {
   return val;
@@ -17820,14 +17916,14 @@ var init_checks3 = __esm(() => {
 // node_modules/zod/v4/classic/iso.js
 var exports_iso2 = {};
 __export(exports_iso2, {
-  time: () => time2,
-  duration: () => duration2,
-  datetime: () => datetime2,
-  date: () => date2,
-  ZodISOTime: () => ZodISOTime,
-  ZodISODuration: () => ZodISODuration,
+  ZodISODate: () => ZodISODate,
   ZodISODateTime: () => ZodISODateTime,
-  ZodISODate: () => ZodISODate
+  ZodISODuration: () => ZodISODuration,
+  ZodISOTime: () => ZodISOTime,
+  date: () => date2,
+  datetime: () => datetime2,
+  duration: () => duration2,
+  time: () => time2
 });
 function datetime2(params) {
   return _isoDateTime(ZodISODateTime, params);
@@ -20724,7 +20820,7 @@ var init_protocol = __esm(() => {
 });
 
 // node_modules/ajv-formats/dist/formats.js
-var require_formats = __commonJS((exports) => {
+var require_formats = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.formatNames = exports.fastFormats = exports.fullFormats = undefined;
   function fmtDef(validate, compare) {
@@ -20901,7 +20997,7 @@ var require_formats = __commonJS((exports) => {
 });
 
 // node_modules/ajv-formats/dist/limit.js
-var require_limit = __commonJS((exports) => {
+var require_limit = __commonJS(function(exports) {
   Object.defineProperty(exports, "__esModule", { value: true });
   exports.formatLimitDefinition = undefined;
   var ajv_1 = require_ajv();
@@ -20970,7 +21066,7 @@ var require_limit = __commonJS((exports) => {
 });
 
 // node_modules/ajv-formats/dist/index.js
-var require_dist = __commonJS((exports, module) => {
+var require_dist = __commonJS(function(exports, module) {
   Object.defineProperty(exports, "__esModule", { value: true });
   var formats_1 = require_formats();
   var limit_1 = require_limit();
@@ -22488,15 +22584,15 @@ var init_verify = __esm(() => {
 // src/vector.ts
 var exports_vector = {};
 __export(exports_vector, {
-  termFrequencies: () => termFrequencies,
-  saveIndex: () => saveIndex,
-  rebuildIndex: () => rebuildIndex,
-  loadIndex: () => loadIndex,
-  indexFilePath: () => indexFilePath,
-  hybridSearch: () => hybridSearch,
-  embed: () => embed,
+  bm25Score: () => bm25Score,
   cosineSimilarity: () => cosineSimilarity2,
-  bm25Score: () => bm25Score
+  embed: () => embed,
+  hybridSearch: () => hybridSearch,
+  indexFilePath: () => indexFilePath,
+  loadIndex: () => loadIndex,
+  rebuildIndex: () => rebuildIndex,
+  saveIndex: () => saveIndex,
+  termFrequencies: () => termFrequencies
 });
 import { existsSync as existsSync19, readFileSync as readFileSync17, writeFileSync as writeFileSync8, mkdirSync as mkdirSync8 } from "node:fs";
 import { join as join18 } from "node:path";
@@ -22666,80 +22762,1923 @@ var init_sessions = __esm(() => {
   init_store();
 });
 
-// src/mcp.ts
-var exports_mcp = {};
-__export(exports_mcp, {
-  runMcpServer: () => runMcpServer
-});
-async function runMcpServer() {
-  const targetDir = process.env.MUSE_MEMORY_PROJECT_DIR || process.env.PROJECT_ROOT || process.cwd();
-  const { root, memoryDir } = findOrCreateProjectRoot(targetDir);
-  const store = openStore(memoryDir);
-  const server = new Server({ name: "musememory", version: "1.2.0" }, { capabilities: { tools: {} } });
-  server.setRequestHandler(ListToolsRequestSchema, async () => ({
-    tools: [
-      {
-        name: "memory_read",
-        description: "Read a full memory entry by id",
-        inputSchema: {
-          type: "object",
-          properties: { id: { type: "string" } },
-          required: ["id"]
-        }
-      },
-      {
-        name: "get_context",
-        description: "Ranked active context entries for prompt injection (with optional token budget)",
-        inputSchema: {
-          type: "object",
-          properties: {
-            query: { type: "string" },
-            project: { type: "string" },
-            limit: { type: "number" },
-            token_budget: { type: "number", description: "Maximum token budget to consume for retrieved context" },
-            type: { type: "string" },
-            status: { type: "string" },
-            verified: { type: "boolean" },
-            depth: { type: "string", enum: ["L1", "L2", "L3"], description: "Progressive disclosure tier: L1 = id+title lines, L2 = title+content+tags (default), L3 = full raw entry" }
-          }
-        }
-      },
-      {
-        name: "search",
-        description: "Ranked search over memory entries",
-        inputSchema: {
-          type: "object",
-          properties: {
-            query: { type: "string" },
-            limit: { type: "number" },
-            token_budget: { type: "number", description: "Maximum token budget to consume" },
-            include_superseded: { type: "boolean" },
-            hybrid: { type: "boolean", description: "Use the offline vector+BM25 index (requires 'memory reindex'); falls back to live scoring when absent" },
-            type: { type: "string" },
-            status: { type: "string" },
-            verified: { type: "boolean" }
-          },
-          required: ["query"]
-        }
-      },
-      {
-        name: "memory_capture",
-        description: "Create a new memory entry with inline secret scan (refuses probable secrets)",
-        inputSchema: {
-          type: "object",
-          properties: {
-            content: { type: "string" },
-            project: { type: "string" },
-            title: { type: "string" },
-            tags: { type: "array", items: { type: "string" } },
-            type: { type: "string" },
-            confirmed: { type: "boolean" }
-          },
-          required: ["content", "project"]
-        }
-      },
-      {
-        name: "memory_harvest",
+// src/retrieval/tree-index.ts
+import { existsSync as existsSync20, readFileSync as readFileSync18, writeFileSync as writeFileSync9, mkdirSync as mkdirSync9, rmSync } from "node:fs";
+import { join as join19 } from "node:path";
+function tokenize2(text) {
+  if (!text || typeof text !== "string")
+    return [];
+  return text.toLowerCase().match(/[a-z0-9]+/g) ?? [];
+}
+function indexDir(memoryDir) {
+  return join19(memoryDir, "tree-index");
+}
+function partitionDir(idxDir, project, type2) {
+  return join19(idxDir, project, type2);
+}
+function shardFilePath(pDir, shardId) {
+  return join19(pDir, `${shardId}.json`);
+}
+function partitionIndexFilePath(pDir) {
+  return join19(pDir, "index.json");
+}
+function globalIndexFilePath(idxDir) {
+  return join19(idxDir, "index.json");
+}
+function nowIso2() {
+  return new Date().toISOString();
+}
+function formatTimeBucket(date4) {
+  const year = date4.getFullYear();
+  const month = String(date4.getMonth() + 1).padStart(2, "0");
+  return `${year}-${month}`;
+}
+function parseTimeBucket(bucket) {
+  const parts = bucket.split("-").map(Number);
+  const year = parts[0] || 2026;
+  const month = parts[1] || 1;
+  const start = new Date(year, month - 1, 1);
+  const end = new Date(year, month, 0, 23, 59, 59);
+  return { start, end };
+}
+function makeShardId(project, type2, date4) {
+  const bucket = formatTimeBucket(date4);
+  return `${project}_${type2}_${bucket}`;
+}
+function cosineSimilarity3(a, b) {
+  let dot = 0;
+  let na = 0;
+  let nb = 0;
+  for (const v of a.values())
+    na += v * v;
+  for (const [t, v] of b) {
+    nb += v * v;
+    const av = a.get(t);
+    if (av)
+      dot += av * v;
+  }
+  return na > 0 && nb > 0 ? dot / Math.sqrt(na * nb) : 0;
+}
+function tokenBag2(text, weight = 1) {
+  const bag = new Map;
+  for (const t of tokenize2(text)) {
+    bag.set(t, (bag.get(t) ?? 0) + weight);
+  }
+  return bag;
+}
+function mergeBag2(target, add) {
+  for (const [t, v] of add)
+    target.set(t, (target.get(t) ?? 0) + v);
+}
+function dominantTopicTokens2(titles) {
+  const stopwords = new Set([
+    "the",
+    "a",
+    "an",
+    "and",
+    "or",
+    "to",
+    "of",
+    "in",
+    "for",
+    "with",
+    "on",
+    "is",
+    "use",
+    "uses",
+    "when",
+    "always",
+    "never",
+    "via",
+    "after",
+    "before",
+    "not",
+    "this",
+    "about"
+  ]);
+  const freq = new Map;
+  for (const title of titles) {
+    for (const t of tokenize2(title)) {
+      if (stopwords.has(t))
+        continue;
+      freq.set(t, (freq.get(t) ?? 0) + 1);
+    }
+  }
+  return [...freq.entries()].sort((a, b) => b[1] - a[1]).slice(0, 2).map(([t]) => t);
+}
+function entryTokens2(e) {
+  const bag = tokenBag2(e.title, 2);
+  mergeBag2(bag, tokenBag2(e.content, 1));
+  return bag;
+}
+function clusterByTokenOverlap2(items, tokensFor, threshold = 0.5) {
+  const clusters = [];
+  for (const item of items) {
+    const bag = tokensFor(item);
+    let best = null;
+    let bestScore = 0;
+    for (const c of clusters) {
+      const score = cosineSimilarity3(bag, c.bag);
+      if (score > bestScore) {
+        bestScore = score;
+        best = c;
+      }
+    }
+    if (best && bestScore >= threshold) {
+      best.items.push(item);
+      mergeBag2(best.bag, bag);
+    } else {
+      clusters.push({ bag: new Map(bag), items: [item] });
+    }
+  }
+  return clusters.map((c) => c.items);
+}
+function buildLeafCluster(cluster) {
+  const topic = dominantTopicTokens2(cluster.map((e) => e.title));
+  const rootId = `node_${Date.now()}_${Math.random().toString(36).slice(2, 7)}_${topic.join("-") || "cluster"}`;
+  return {
+    id: rootId,
+    title: topic.length > 0 ? topic.join(" ") : cluster[0]?.type ?? "cluster",
+    summary: cluster.map((e) => e.content.replace(/\s+/g, " ").slice(0, 200)).join(" | "),
+    type: cluster[0]?.type ?? "discovery",
+    status: "confirmed",
+    project: cluster[0]?.project ?? "default",
+    children: [],
+    memoryIds: cluster.map((e) => e.id),
+    metadata: {
+      createdAt: cluster[0]?.created_at ?? nowIso2(),
+      updatedAt: cluster[0]?.updated_at ?? nowIso2(),
+      salience: cluster.reduce((max, e) => Math.max(max, e.salience ?? 0), 0),
+      verification: "user-confirmed",
+      tags: [...new Set(cluster.flatMap((e) => e.tags ?? []))]
+    },
+    content: cluster.map((e) => e.content).join(`
+---
+`)
+  };
+}
+function buildClusterHierarchy(cluster, config2, depth = 0) {
+  if (depth >= MAX_RECURSION_DEPTH || cluster.length <= config2.minClusterSize * 2) {
+    return buildLeafCluster(cluster);
+  }
+  const topic = dominantTopicTokens2(cluster.map((e) => e.title));
+  const rootId = `node_${Date.now()}_${Math.random().toString(36).slice(2, 7)}_${topic.join("-") || "cluster"}`;
+  const root = {
+    id: rootId,
+    title: topic.length > 0 ? topic.join(" ") : cluster[0]?.type ?? "cluster",
+    summary: cluster.map((e) => e.content.replace(/\s+/g, " ").slice(0, 200)).join(" | "),
+    type: cluster[0]?.type ?? "discovery",
+    status: "confirmed",
+    project: cluster[0]?.project ?? "default",
+    children: [],
+    memoryIds: [],
+    metadata: {
+      createdAt: cluster[0]?.created_at ?? nowIso2(),
+      updatedAt: cluster[0]?.updated_at ?? nowIso2(),
+      salience: cluster.reduce((max, e) => Math.max(max, e.salience ?? 0), 0),
+      verification: "user-confirmed",
+      tags: [...new Set(cluster.flatMap((e) => e.tags ?? []))]
+    }
+  };
+  const subClusters = clusterByTokenOverlap2(cluster, entryTokens2, config2.clusteringThreshold);
+  const validSubClusters = subClusters.filter((sc) => sc.length < cluster.length && sc.length >= config2.minClusterSize);
+  if (validSubClusters.length === 0) {
+    return buildLeafCluster(cluster);
+  }
+  for (const subCluster of validSubClusters) {
+    root.children.push(buildClusterHierarchy(subCluster, config2, depth + 1));
+  }
+  const remaining = subClusters.filter((sc) => sc.length < config2.minClusterSize).flatMap((sc) => sc.map((e) => e.id));
+  root.memoryIds.push(...remaining);
+  root.content = root.children.map((c) => c.summary).join(`
+---
+`);
+  return root;
+}
+function countNodes(node) {
+  return 1 + node.children.reduce((sum, c) => sum + countNodes(c), 0);
+}
+function buildTreeIndex(store, memoryDir, config2 = {}) {
+  const cfg = { ...DEFAULT_CONFIG, ...config2 };
+  const allMemories = list(store).filter((e) => e.status === "confirmed");
+  mkdirSync9(indexDir(memoryDir), { recursive: true });
+  if (allMemories.length === 0) {
+    const emptyIndex = {
+      version: 1,
+      partitions: {},
+      totalNodes: 0,
+      totalMemories: 0,
+      builtAt: nowIso2()
+    };
+    writeFileSync9(globalIndexFilePath(indexDir(memoryDir)), JSON.stringify(emptyIndex, null, 2), "utf8");
+    return emptyIndex;
+  }
+  const groups = new Map;
+  for (const e of allMemories) {
+    const key = `${e.project}|${e.type ?? "unknown"}`;
+    const group = groups.get(key);
+    if (group)
+      group.push(e);
+    else
+      groups.set(key, [e]);
+  }
+  const partitions = {};
+  let totalIndexNodes = 0;
+  let totalIndexMemories = 0;
+  for (const [key, memories] of groups) {
+    const [project, type2] = key.split("|");
+    const pDir = partitionDir(indexDir(memoryDir), project, type2);
+    mkdirSync9(pDir, { recursive: true });
+    const maxShardSize = cfg.shardThreshold || 1e4;
+    const finalShards = [];
+    const memoryChunks = [];
+    if (memories.length > maxShardSize) {
+      for (let i = 0;i < memories.length; i += maxShardSize) {
+        memoryChunks.push(memories.slice(i, i + maxShardSize));
+      }
+    } else {
+      memoryChunks.push(memories);
+    }
+    for (let chunkIdx = 0;chunkIdx < memoryChunks.length; chunkIdx++) {
+      const chunk = memoryChunks[chunkIdx];
+      const clusters = clusterByTokenOverlap2(chunk, entryTokens2, cfg.clusteringThreshold);
+      const medianTime = chunk.map((e) => e.created_at ? Date.parse(e.created_at) : Date.now()).sort((a, b) => a - b)[Math.floor(chunk.length / 2)] || Date.now();
+      const baseShardId = makeShardId(project, type2, new Date(medianTime));
+      const shardId = memoryChunks.length > 1 ? `${baseShardId}_p${chunkIdx + 1}` : baseShardId;
+      const bucket = formatTimeBucket(new Date(medianTime));
+      const { start, end } = parseTimeBucket(bucket);
+      const shardNodes = [];
+      for (const cluster of clusters) {
+        if (cluster.length === 0)
+          continue;
+        const node = cluster.length >= cfg.minClusterSize ? buildClusterHierarchy(cluster, cfg) : buildLeafCluster(cluster);
+        node.partition = { shardId, nodeCount: countNodes(node), minScore: 0, maxScore: 0 };
+        shardNodes.push(node);
+      }
+      const shard = {
+        id: shardId,
+        project,
+        type: type2,
+        timeRange: { start: start.toISOString(), end: end.toISOString() },
+        nodes: shardNodes,
+        stats: {
+          memoryCount: chunk.length,
+          nodeCount: shardNodes.reduce((sum, n) => sum + countNodes(n), 0),
+          minScore: 1,
+          maxScore: 0,
+          builtAt: nowIso2()
+        }
+      };
+      for (const node of shardNodes) {
+        const score = node.metadata?.salience ?? 0;
+        shard.stats.minScore = Math.min(shard.stats.minScore, score);
+        shard.stats.maxScore = Math.max(shard.stats.maxScore, score);
+      }
+      finalShards.push(shard);
+    }
+    const partitionMemories = memories.length;
+    const partitionNodes = finalShards.reduce((sum, s) => sum + s.nodes.length, 0);
+    const partition = {
+      project,
+      type: type2,
+      shards: finalShards,
+      totalNodes: partitionNodes,
+      totalMemories: partitionMemories,
+      updatedAt: nowIso2()
+    };
+    partitions[`${project}|${type2}`] = partition;
+    totalIndexNodes += partitionNodes;
+    totalIndexMemories += partitionMemories;
+    writeFileSync9(partitionIndexFilePath(pDir), JSON.stringify(partition, null, 2), "utf8");
+    for (const shard of finalShards) {
+      writeFileSync9(shardFilePath(pDir, shard.id), JSON.stringify(shard, null, 2), "utf8");
+    }
+  }
+  const index = {
+    version: 1,
+    partitions,
+    totalNodes: totalIndexNodes,
+    totalMemories: totalIndexMemories,
+    builtAt: nowIso2()
+  };
+  writeFileSync9(globalIndexFilePath(indexDir(memoryDir)), JSON.stringify(index, null, 2), "utf8");
+  return index;
+}
+function loadTreeIndex(memoryDir) {
+  const path = globalIndexFilePath(indexDir(memoryDir));
+  if (!existsSync20(path))
+    return null;
+  try {
+    const data = JSON.parse(readFileSync18(path, "utf8"));
+    return data.version === 1 ? data : null;
+  } catch {
+    return null;
+  }
+}
+function selectPartitions(index, options) {
+  const result = [];
+  for (const partition of Object.values(index.partitions)) {
+    if (options.project && partition.project !== options.project)
+      continue;
+    if (options.type && partition.type !== options.type)
+      continue;
+    result.push(partition);
+  }
+  return result;
+}
+function scoreNode(node, query) {
+  const queryTokens = new Set(tokenize2(query));
+  if (queryTokens.size === 0)
+    return 0;
+  const haystack = tokenize2(`${node.title} ${node.summary} ${(node.metadata?.tags ?? []).join(" ")}`);
+  const hay = new Set(haystack);
+  let overlap = 0;
+  for (const t of queryTokens)
+    if (hay.has(t))
+      overlap++;
+  const baseScore = overlap / Math.max(1, queryTokens.size);
+  const salienceBonus = (node.metadata?.salience ?? 0) * 0.1;
+  return baseScore + salienceBonus;
+}
+function estimateNodeTokens(node, depth) {
+  const base = (node.title?.length ?? 0) + (node.summary?.length ?? 0);
+  const contentLen = node.content?.length ?? 0;
+  const metaLen = JSON.stringify(node.metadata ?? {}).length;
+  switch (depth) {
+    case "L1":
+      return Math.max(1, Math.ceil(base / 4));
+    case "L2":
+      return Math.max(1, Math.ceil((base + contentLen) / 4));
+    case "L3":
+      return Math.max(1, Math.ceil((base + contentLen + metaLen) / 4));
+  }
+}
+function traverseShardBestFirst(shard, query, maxDepth, remainingBudget, disclosureDepth) {
+  if (remainingBudget <= 0)
+    return { nodes: [], tokensUsed: 0 };
+  const results = [];
+  let tokensUsed = 0;
+  const queue = [];
+  for (const node of shard.nodes) {
+    const score = scoreNode(node, query);
+    if (score >= SEARCH_SCORE_THRESHOLD) {
+      queue.push({ node, depth: 0, score });
+    }
+  }
+  queue.sort((a, b) => b.score - a.score);
+  while (queue.length > 0 && tokensUsed < remainingBudget) {
+    const { node, depth, score } = queue.shift();
+    if (depth > maxDepth)
+      continue;
+    const nodeTokens = estimateNodeTokens(node, disclosureDepth);
+    if (tokensUsed + nodeTokens > remainingBudget && results.length > 0)
+      break;
+    results.push({ node, score });
+    tokensUsed += nodeTokens;
+    for (const child of node.children) {
+      const childScore = scoreNode(child, query);
+      if (childScore >= SEARCH_SCORE_THRESHOLD) {
+        queue.push({ node: child, depth: depth + 1, score: childScore });
+      }
+    }
+    queue.sort((a, b) => b.score - a.score);
+  }
+  return { nodes: results, tokensUsed };
+}
+function paginateResults(results, page, pageSize) {
+  const start = Math.max(0, (page - 1) * pageSize);
+  return results.slice(start, start + pageSize);
+}
+function searchTree(index, options) {
+  const tokenBudget = options.tokenBudget ?? 2000;
+  const maxDepth = options.maxDepth ?? 5;
+  const maxNodes = options.maxNodes ?? 100;
+  const disclosureDepth = options.disclosureDepth ?? "L1";
+  let tokensUsed = 0;
+  const partitions = selectPartitions(index, options);
+  const results = [];
+  let partitionsSearched = 0;
+  let shardsSearched = 0;
+  for (const partition of partitions) {
+    if (tokensUsed >= tokenBudget || results.length >= maxNodes)
+      break;
+    partitionsSearched++;
+    for (const shard of partition.shards) {
+      if (tokensUsed >= tokenBudget || results.length >= maxNodes)
+        break;
+      shardsSearched++;
+      const shardResults = traverseShardBestFirst(shard, options.query, maxDepth, tokenBudget - tokensUsed, disclosureDepth);
+      tokensUsed += shardResults.tokensUsed;
+      results.push(...shardResults.nodes);
+      if (results.length >= maxNodes)
+        break;
+    }
+  }
+  results.sort((a, b) => b.score - a.score);
+  const paginated = paginateResults(results, options.page ?? 1, options.pageSize ?? 10);
+  return {
+    nodes: paginated,
+    memories: [],
+    total: results.length,
+    tokensUsed,
+    partitionsSearched,
+    shardsSearched
+  };
+}
+var SHARD_THRESHOLD = 1e4, SHARD_TIME_BUCKET = "monthly", UPSERT_INTERVAL_MS = 60000, MAX_RECURSION_DEPTH = 5, SEARCH_SCORE_THRESHOLD = 0.05, DEFAULT_CONFIG;
+var init_tree_index = __esm(() => {
+  init_store();
+  DEFAULT_CONFIG = {
+    maxDepth: 5,
+    maxNodesPerQuery: 100,
+    clusteringThreshold: 0.5,
+    minClusterSize: 3,
+    shardThreshold: SHARD_THRESHOLD,
+    shardTimeBucket: SHARD_TIME_BUCKET,
+    enableLLMReasoning: false,
+    upsertIntervalMs: UPSERT_INTERVAL_MS
+  };
+});
+
+// src/retrieval/index.ts
+var init_retrieval3 = __esm(() => {
+  init_tree_index();
+});
+
+// src/wiki/render.ts
+function renderConceptPage(page) {
+  const frontmatter = [
+    "---",
+    `title: "${page.title}"`,
+    `type: ${page.type}`,
+    `project: ${page.project}`,
+    `updatedAt: ${page.updatedAt}`,
+    `tags: [${page.tags.map((t) => `"${t}"`).join(", ")}]`,
+    `relatedConcepts: [${page.relatedConcepts.map((s) => `"${s}"`).join(", ")}]`,
+    `relatedEntities: [${page.relatedEntities.map((s) => `"${s}"`).join(", ")}]`,
+    `memoryRefs: [${page.memoryRefs.map((s) => `"${s}"`).join(", ")}]`,
+    "---"
+  ].join(`
+`);
+  const related = [
+    page.relatedConcepts.length > 0 && `## Related Concepts
+
+${page.relatedConcepts.map((s) => `- [[${s}]]`).join(`
+`)}`,
+    page.relatedEntities.length > 0 && `## Related Entities
+
+${page.relatedEntities.map((s) => `- [[${s}]]`).join(`
+`)}`
+  ].filter(Boolean).join(`
+
+`);
+  const memories = page.memoryRefs.length > 0 ? `
+## Source Memories
+
+${page.memoryRefs.map((id) => `- [[${id}]]`).join(`
+`)}` : "";
+  return `${frontmatter}
+
+# ${page.title}
+
+## Summary
+
+${page.summary}
+
+## Content
+
+${page.content}
+
+${related}${memories}
+`;
+}
+function renderEntityPage(page) {
+  const frontmatter = [
+    "---",
+    `title: "${page.title}"`,
+    `type: ${page.type}`,
+    `entityType: ${page.entityType}`,
+    `project: ${page.project}`,
+    `updatedAt: ${page.updatedAt}`,
+    `relatedEntities: [${page.relatedEntities.map((s) => `"${s}"`).join(", ")}]`,
+    `relatedConcepts: [${page.relatedConcepts.map((s) => `"${s}"`).join(", ")}]`,
+    `memoryRefs: [${page.memoryRefs.map((s) => `"${s}"`).join(", ")}]`,
+    "---"
+  ].join(`
+`);
+  const related = [
+    page.relatedEntities.length > 0 && `## Related Entities
+
+${page.relatedEntities.map((s) => `- [[${s}]]`).join(`
+`)}`,
+    page.relatedConcepts.length > 0 && `## Related Concepts
+
+${page.relatedConcepts.map((s) => `- [[${s}]]`).join(`
+`)}`
+  ].filter(Boolean).join(`
+
+`);
+  const mentions = page.mentions.length > 0 ? `
+## Mentions
+
+${page.mentions.map((m) => `- [[${m.memoryId}]]: ${m.context}`).join(`
+`)}` : "";
+  return `${frontmatter}
+
+# ${page.title}
+
+**Type:** ${page.entityType}
+
+## Summary
+
+${page.summary}
+
+## Content
+
+${page.content}
+
+${related}${mentions}
+`;
+}
+function renderIndexPage(page) {
+  const frontmatter = [
+    "---",
+    `title: "${page.title}"`,
+    `type: ${page.type}`,
+    `project: ${page.project}`,
+    `updatedAt: ${page.updatedAt}`,
+    "---"
+  ].join(`
+`);
+  const sections = page.sections.map((section) => {
+    const items = section.items.map((slug) => `- [[${slug}]]`).join(`
+`);
+    return `## ${section.title}
+
+${items}`;
+  }).join(`
+
+`);
+  return `${frontmatter}
+
+# ${page.title}
+
+${sections}
+`;
+}
+function renderLogPage(page) {
+  const frontmatter = [
+    "---",
+    `title: "${page.title}"`,
+    `type: ${page.type}`,
+    `project: ${page.project}`,
+    `updatedAt: ${page.updatedAt}`,
+    "---"
+  ].join(`
+`);
+  const entries = page.entries.map((entry) => {
+    const memRefs = entry.memoryIds && entry.memoryIds.length > 0 ? ` (${entry.memoryIds.map((id) => `[[${id}]]`).join(", ")})` : "";
+    return `- **${entry.timestamp}** [${entry.action}] ${entry.pageSlug}${memRefs}${entry.details ? `: ${entry.details}` : ""}`;
+  }).join(`
+`);
+  return `${frontmatter}
+
+# ${page.title}
+
+${entries}
+`;
+}
+
+// src/wiki/compiler.ts
+import { existsSync as existsSync21, mkdirSync as mkdirSync10, writeFileSync as writeFileSync10, readFileSync as readFileSync19, readdirSync as readdirSync7 } from "node:fs";
+import { join as join20 } from "node:path";
+function compileWiki(store, memoryDir, options = {}) {
+  const project = options.project;
+  const dryRun = options.dryRun ?? false;
+  const minClusterSize = options.minClusterSize ?? DEFAULT_MIN_CLUSTER_SIZE;
+  const clusteringThreshold = options.clusteringThreshold ?? DEFAULT_CLUSTERING_THRESHOLD;
+  const includeTypes = options.includeTypes ?? [
+    "fix",
+    "decision",
+    "architecture",
+    "operation",
+    "failure",
+    "constraint",
+    "preference",
+    "discovery"
+  ];
+  const allMemories = list(store).filter((e) => e.status === "confirmed" && includeTypes.includes(e.type ?? "discovery"));
+  if (project) {
+    const filtered = allMemories.filter((e) => e.project === project);
+    if (filtered.length === 0) {
+      return { pagesCreated: [], pagesUpdated: [], logEntries: [], errors: [`No confirmed memories found for project: ${project}`] };
+    }
+  }
+  const memories = project ? allMemories.filter((e) => e.project === project) : allMemories;
+  const wikiDir = join20(memoryDir, "wiki");
+  const conceptsDir = join20(wikiDir, "concepts");
+  const entitiesDir = join20(wikiDir, "entities");
+  if (!dryRun) {
+    mkdirSync10(conceptsDir, { recursive: true });
+    mkdirSync10(entitiesDir, { recursive: true });
+  }
+  const result = { pagesCreated: [], pagesUpdated: [], logEntries: [], errors: [] };
+  const existingConcepts = loadExistingConcepts(conceptsDir);
+  const existingEntities = loadExistingEntities(entitiesDir);
+  const conceptMap = new Map;
+  const entityMap = new Map;
+  const groups = new Map;
+  for (const e of memories) {
+    const key = `${e.project}|${e.type ?? "unknown"}`;
+    const group = groups.get(key);
+    if (group)
+      group.push(e);
+    else
+      groups.set(key, [e]);
+  }
+  for (const [, groupMemories] of groups) {
+    const clusters = clusterByTokenOverlap(groupMemories, entryTokens3, clusteringThreshold);
+    for (const cluster of clusters) {
+      if (cluster.length < minClusterSize)
+        continue;
+      const topic = dominantTopicTokens(cluster.map((e) => e.title));
+      const slug = slugify2(topic.join("-") || (cluster[0].type ?? "concept"));
+      const existing = existingConcepts.get(slug);
+      const conceptPage = buildConceptPage(cluster, topic, slug, existing);
+      if (existing) {
+        result.pagesUpdated.push(conceptPage);
+        result.logEntries.push({
+          timestamp: new Date().toISOString(),
+          action: "updated",
+          pageSlug: slug,
+          memoryIds: cluster.map((e) => e.id),
+          details: `Updated concept from ${cluster.length} memories`
+        });
+      } else {
+        result.pagesCreated.push(conceptPage);
+        result.logEntries.push({
+          timestamp: new Date().toISOString(),
+          action: "created",
+          pageSlug: slug,
+          memoryIds: cluster.map((e) => e.id),
+          details: `Created concept from ${cluster.length} memories`
+        });
+      }
+      conceptMap.set(slug, conceptPage);
+    }
+  }
+  crossLinkConcepts(conceptMap);
+  const extractedEntities = extractEntities(memories);
+  for (const [slug, entity] of extractedEntities) {
+    const existing = existingEntities.get(slug);
+    if (existing) {
+      entity.memoryRefs = Array.from(new Set([...existing.memoryRefs, ...entity.memoryRefs]));
+      entity.mentions = [...existing.mentions, ...entity.mentions].slice(-50);
+      result.pagesUpdated.push(entity);
+      result.logEntries.push({
+        timestamp: new Date().toISOString(),
+        action: "updated",
+        pageSlug: slug,
+        memoryIds: entity.memoryRefs,
+        details: `Updated entity with ${entity.memoryRefs.length} mentions`
+      });
+    } else {
+      result.pagesCreated.push(entity);
+      result.logEntries.push({
+        timestamp: new Date().toISOString(),
+        action: "created",
+        pageSlug: slug,
+        memoryIds: entity.memoryRefs,
+        details: `Created entity from ${entity.memoryRefs.length} mentions`
+      });
+    }
+    entityMap.set(slug, entity);
+  }
+  crossLinkEntities(entityMap, conceptMap);
+  const indexPage = buildIndexPage(conceptMap, entityMap, project ?? "all");
+  result.pagesCreated.push(indexPage);
+  const logPage = buildLogPage(result.logEntries);
+  result.pagesCreated.push(logPage);
+  if (!dryRun) {
+    writeConceptPages(conceptMap, conceptsDir);
+    writeEntityPages(entityMap, entitiesDir);
+    writeIndexPage(indexPage, wikiDir);
+    writeLogPage(logPage, wikiDir);
+  }
+  return result;
+}
+function entryTokens3(e) {
+  const bag = new Map;
+  for (const t of tokenize3(e.title))
+    bag.set(t, (bag.get(t) ?? 0) + 2);
+  for (const t of tokenize3(e.content))
+    bag.set(t, (bag.get(t) ?? 0) + 1);
+  return bag;
+}
+function buildConceptPage(cluster, topic, slug, existing) {
+  const clusterProject = cluster[0].project;
+  const memoryIds = cluster.map((e) => e.id);
+  const tags = Array.from(new Set(cluster.flatMap((e) => e.tags ?? [])));
+  const content = cluster.map((e) => `## ${e.title}
+
+${e.content}
+
+*Source: ${e.id}*`).join(`
+
+---
+
+`);
+  const summary = cluster.map((e) => e.content.slice(0, 200)).join(" | ");
+  return {
+    slug,
+    title: topic.length > 0 ? topic.join(" ") : cluster[0].type ?? "concept",
+    type: "concept",
+    clusterProject,
+    updatedAt: new Date().toISOString(),
+    relatedPages: existing?.relatedPages ?? [],
+    memoryRefs: memoryIds,
+    summary,
+    content,
+    tags: Array.from(new Set(cluster.flatMap((e) => e.tags ?? []))),
+    relatedConcepts: existing?.relatedConcepts ?? [],
+    relatedEntities: existing?.relatedEntities ?? []
+  };
+}
+function crossLinkConcepts(conceptMap) {
+  const concepts = Array.from(conceptMap.values());
+  for (let i = 0;i < concepts.length; i++) {
+    for (let j = i + 1;j < concepts.length; j++) {
+      const a = concepts[i];
+      const b = concepts[j];
+      const similarity = cosineSimilarity4(tokenBag3(a.title + " " + a.summary + " " + a.tags.join(" ")), tokenBag3(b.title + " " + b.summary + " " + b.tags.join(" ")));
+      if (similarity >= 0.3) {
+        if (!a.relatedConcepts.includes(b.slug))
+          a.relatedConcepts.push(b.slug);
+        if (!b.relatedConcepts.includes(a.slug))
+          b.relatedConcepts.push(a.slug);
+      }
+    }
+  }
+}
+function extractEntities(memories) {
+  const entityMap = new Map;
+  for (const memory of memories) {
+    const entities = extractEntitiesFromText(memory.content, memory.id);
+    for (const entity of entities) {
+      const slug = slugify2(entity.name);
+      const existing = entityMap.get(slug);
+      if (existing) {
+        existing.memoryRefs.push(memory.id);
+        existing.mentions.push({ memoryId: memory.id, context: extractContext(memory.content, entity.name) });
+      } else {
+        entityMap.set(slug, {
+          slug,
+          title: entity.name,
+          type: "entity",
+          entityType: entity.type,
+          project: memory.project,
+          updatedAt: new Date().toISOString(),
+          relatedPages: [],
+          memoryRefs: [memory.id],
+          summary: `${entity.type}: ${entity.name}`,
+          content: `## ${entity.name}
+
+**Type:** ${entity.type}
+
+**Mentions:**
+- ${memory.id}: ${extractContext(memory.content, entity.name)}`,
+          mentions: [{ memoryId: memory.id, context: extractContext(memory.content, entity.name) }],
+          relatedEntities: [],
+          relatedConcepts: []
+        });
+      }
+    }
+  }
+  return entityMap;
+}
+function extractEntitiesFromText(text, memoryId) {
+  const entities = [];
+  const personMatches = text.match(/@(\w+)/g);
+  if (personMatches) {
+    for (const match of personMatches) {
+      entities.push({ name: match.slice(1), type: "person" });
+    }
+  }
+  const productPatterns = [
+    /\b(?:Next\.js|React|TypeScript|Node\.js|Bun|Vercel|Anthropic|OpenAI|PostgreSQL|Redis|Docker|Kubernetes|GraphQL|REST|gRPC|WebAssembly|WASM|Tailwind|ESLint|Prettier|Jest|Vitest|Playwright|Cypress)\b/gi,
+    /\b\w+\.js\b/gi
+  ];
+  for (const pattern of productPatterns) {
+    const matches = text.match(pattern);
+    if (matches) {
+      for (const match of matches) {
+        entities.push({ name: match, type: "product" });
+      }
+    }
+  }
+  const orgPatterns = [
+    /\b(?:Vercel|Anthropic|OpenAI|Google|Microsoft|GitHub|GitLab|AWS|GCP|Azure|Meta|Facebook|Amazon|Netflix|Shopify|Stripe|Supabase|PlanetScale|Neon|Turso)\b/gi
+  ];
+  for (const pattern of orgPatterns) {
+    const matches = text.match(pattern);
+    if (matches) {
+      for (const match of matches) {
+        entities.push({ name: match, type: "organization" });
+      }
+    }
+  }
+  const fileMatches = text.match(/(?:src|lib|test|docs|scripts)\/[\w\/\.-]+\.(?:ts|tsx|js|jsx|json|yaml|yml|md|mdx)/g);
+  if (fileMatches) {
+    for (const match of fileMatches) {
+      entities.push({ name: match, type: "file" });
+    }
+  }
+  const seen = new Set;
+  return entities.filter((e) => {
+    const key = e.name.toLowerCase();
+    if (seen.has(key))
+      return false;
+    seen.add(key);
+    return true;
+  });
+}
+function extractContext(text, entityName) {
+  const idx = text.toLowerCase().indexOf(entityName.toLowerCase());
+  if (idx === -1)
+    return text.slice(0, 100);
+  const start = Math.max(0, idx - 50);
+  const end = Math.min(text.length, idx + entityName.length + 50);
+  return "..." + text.slice(start, end) + "...";
+}
+function crossLinkEntities(entityMap, conceptMap) {
+  const entities = Array.from(entityMap.values());
+  for (let i = 0;i < entities.length; i++) {
+    for (let j = i + 1;j < entities.length; j++) {
+      const a = entities[i];
+      const b = entities[j];
+      const commonMemories = a.memoryRefs.filter((id) => b.memoryRefs.includes(id));
+      if (commonMemories.length >= 2) {
+        if (!a.relatedEntities.includes(b.slug))
+          a.relatedEntities.push(b.slug);
+        if (!b.relatedEntities.includes(a.slug))
+          b.relatedEntities.push(a.slug);
+      }
+    }
+  }
+  for (const entity of entities) {
+    for (const concept of conceptMap.values()) {
+      const similarity = cosineSimilarity4(tokenBag3(entity.title + " " + entity.summary), tokenBag3(concept.title + " " + concept.summary + " " + concept.tags.join(" ")));
+      if (similarity >= 0.3) {
+        if (!entity.relatedConcepts.includes(concept.slug))
+          entity.relatedConcepts.push(concept.slug);
+        if (!concept.relatedEntities.includes(entity.slug))
+          concept.relatedEntities.push(entity.slug);
+      }
+    }
+  }
+}
+function buildIndexPage(conceptMap, entityMap, project) {
+  const concepts = Array.from(conceptMap.values());
+  const entities = Array.from(entityMap.values());
+  return {
+    slug: "index",
+    title: "Knowledge Base Index",
+    type: "index",
+    project: project || "all",
+    updatedAt: new Date().toISOString(),
+    relatedPages: [],
+    memoryRefs: [],
+    sections: [
+      {
+        title: "Concepts",
+        type: "concepts",
+        items: concepts.map((c) => c.slug)
+      },
+      {
+        title: "Entities",
+        type: "entities",
+        items: entities.map((e) => e.slug)
+      },
+      {
+        title: "By Type",
+        type: "by-type",
+        items: Array.from(new Set(concepts.map((c) => c.type))).map((t) => `type:${t}`)
+      }
+    ]
+  };
+}
+function buildLogPage(logEntries) {
+  return {
+    slug: "log",
+    title: "Compilation Log",
+    type: "log",
+    project: "all",
+    updatedAt: new Date().toISOString(),
+    relatedPages: [],
+    memoryRefs: [],
+    entries: logEntries
+  };
+}
+function loadExistingConcepts(dir) {
+  const map3 = new Map;
+  if (!existsSync21(dir))
+    return map3;
+  for (const file of readdirSync7(dir)) {
+    if (!file.endsWith(".md"))
+      continue;
+    const slug = file.slice(0, -3);
+    try {
+      const content = readFileSync19(join20(dir, file), "utf8");
+      const frontmatter = parseFrontmatter(content);
+      map3.set(slug, { ...frontmatter, slug, content: content.slice(content.indexOf(`
+---
+`) + 5) });
+    } catch {}
+  }
+  return map3;
+}
+function loadExistingEntities(dir) {
+  const map3 = new Map;
+  if (!existsSync21(dir))
+    return map3;
+  for (const file of readdirSync7(dir)) {
+    if (!file.endsWith(".md"))
+      continue;
+    const slug = file.slice(0, -3);
+    try {
+      const content = readFileSync19(join20(dir, file), "utf8");
+      const frontmatter = parseFrontmatter(content);
+      map3.set(slug, { ...frontmatter, slug, content: content.slice(content.indexOf(`
+---
+`) + 5) });
+    } catch {}
+  }
+  return map3;
+}
+function parseFrontmatter(content) {
+  const match = content.match(/^---\n([\s\S]*?)\n---/);
+  if (!match)
+    return {};
+  const lines = match[1].split(`
+`);
+  const obj = {};
+  for (const line of lines) {
+    const idx = line.indexOf(":");
+    if (idx > 0) {
+      const key = line.slice(0, idx).trim();
+      const value = line.slice(idx + 1).trim();
+      obj[key] = value.replace(/^["']|["']$/g, "");
+    }
+  }
+  return obj;
+}
+function slugify2(text) {
+  return text.toLowerCase().replace(/[^a-z0-9]+/g, "-").replace(/^-+|-+$/g, "").slice(0, 60);
+}
+function writeConceptPages(map3, dir) {
+  for (const [slug, page] of map3) {
+    const content = renderConceptPage(page);
+    writeFileSync10(join20(dir, slug + ".md"), content, "utf8");
+  }
+}
+function writeEntityPages(map3, dir) {
+  for (const [slug, page] of map3) {
+    const content = renderEntityPage(page);
+    writeFileSync10(join20(dir, slug + ".md"), content, "utf8");
+  }
+}
+function writeIndexPage(page, dir) {
+  const content = renderIndexPage(page);
+  writeFileSync10(join20(dir, "index.md"), content, "utf8");
+}
+function writeLogPage(page, dir) {
+  const content = renderLogPage(page);
+  writeFileSync10(join20(dir, "log.md"), content, "utf8");
+}
+function tokenBag3(text, weight = 1) {
+  const bag = new Map;
+  for (const t of tokenize3(text)) {
+    bag.set(t, (bag.get(t) ?? 0) + weight);
+  }
+  return bag;
+}
+function cosineSimilarity4(a, b) {
+  let dot = 0;
+  let na = 0;
+  let nb = 0;
+  for (const v of a.values())
+    na += v * v;
+  for (const [t, v] of b) {
+    nb += v * v;
+    const av = a.get(t);
+    if (av)
+      dot += av * v;
+  }
+  return na > 0 && nb > 0 ? dot / Math.sqrt(na * nb) : 0;
+}
+function tokenize3(text) {
+  if (!text || typeof text !== "string")
+    return [];
+  return text.toLowerCase().match(/[a-z0-9]+/g) ?? [];
+}
+function listWikiPages(memoryDir, options = {}) {
+  const wikiDir = join20(memoryDir, "wiki");
+  const pages = [];
+  if (options.type === undefined || options.type === "concept") {
+    const concepts = loadExistingConcepts(join20(wikiDir, "concepts"));
+    for (const page of concepts.values()) {
+      if (!options.project || page.project === options.project) {
+        pages.push(page);
+      }
+    }
+  }
+  if (options.type === undefined || options.type === "entity") {
+    const entities = loadExistingEntities(join20(wikiDir, "entities"));
+    for (const page of entities.values()) {
+      if (!options.project || page.project === options.project) {
+        pages.push(page);
+      }
+    }
+  }
+  if (options.type === undefined || options.type === "index") {
+    const idxPath = join20(wikiDir, "index.md");
+    if (existsSync21(idxPath)) {
+      try {
+        const raw = readFileSync19(idxPath, "utf8");
+        const fm = parseFrontmatter(raw);
+        pages.push({ ...fm, slug: "index", type: "index", content: raw });
+      } catch {}
+    }
+  }
+  if (options.type === undefined || options.type === "log") {
+    const logPath = join20(wikiDir, "log.md");
+    if (existsSync21(logPath)) {
+      try {
+        const raw = readFileSync19(logPath, "utf8");
+        const fm = parseFrontmatter(raw);
+        pages.push({ ...fm, slug: "log", type: "log", content: raw });
+      } catch {}
+    }
+  }
+  return pages;
+}
+function getWikiPage(memoryDir, slug, type2) {
+  const wikiDir = join20(memoryDir, "wiki");
+  if (slug === "index") {
+    const p = join20(wikiDir, "index.md");
+    if (existsSync21(p)) {
+      const raw = readFileSync19(p, "utf8");
+      const fm = parseFrontmatter(raw);
+      return { ...fm, slug: "index", type: "index", content: raw };
+    }
+    return null;
+  }
+  if (slug === "log") {
+    const p = join20(wikiDir, "log.md");
+    if (existsSync21(p)) {
+      const raw = readFileSync19(p, "utf8");
+      const fm = parseFrontmatter(raw);
+      return { ...fm, slug: "log", type: "log", content: raw };
+    }
+    return null;
+  }
+  if (!type2 || type2 === "concept") {
+    const p = join20(wikiDir, "concepts", `${slug}.md`);
+    if (existsSync21(p)) {
+      const raw = readFileSync19(p, "utf8");
+      const fm = parseFrontmatter(raw);
+      return { ...fm, slug, type: "concept", content: raw };
+    }
+  }
+  if (!type2 || type2 === "entity") {
+    const p = join20(wikiDir, "entities", `${slug}.md`);
+    if (existsSync21(p)) {
+      const raw = readFileSync19(p, "utf8");
+      const fm = parseFrontmatter(raw);
+      return { ...fm, slug, type: "entity", content: raw };
+    }
+  }
+  return null;
+}
+var DEFAULT_MIN_CLUSTER_SIZE = 3, DEFAULT_CLUSTERING_THRESHOLD = 0.5;
+var init_compiler = __esm(() => {
+  init_store();
+  init_consolidate();
+});
+
+// src/wiki/index.ts
+var init_wiki = __esm(() => {
+  init_compiler();
+});
+// src/entities/extractor.ts
+import { existsSync as existsSync22, mkdirSync as mkdirSync11, readFileSync as readFileSync20, writeFileSync as writeFileSync11 } from "node:fs";
+import { join as join21 } from "node:path";
+function slugify3(text) {
+  return text.toLowerCase().replace(/[^a-z0-9]+/g, "-").replace(/^-+|-+$/g, "").slice(0, 60);
+}
+function extractEntitiesFromMemories(memories, config2 = {}) {
+  const enabledTypes = new Set(config2.enabledTypes ?? ["person", "product", "organization", "file", "concept"]);
+  const aliasMap = config2.aliasMap ?? {};
+  const cooccurrenceThreshold = config2.cooccurrenceThreshold ?? 1;
+  const entityMap = new Map;
+  const memoryEntityMap = new Map;
+  for (const memory of memories) {
+    const text = `${memory.title} ${memory.content} ${(memory.tags ?? []).join(" ")}`;
+    const foundInThisMemory = new Map;
+    if (enabledTypes.has("person")) {
+      for (const pattern of DEFAULT_ENTITY_PATTERNS.person) {
+        const matches = text.matchAll(new RegExp(pattern));
+        for (const match of matches) {
+          const raw = match[1] ?? match[0];
+          const name = raw.replace(/^@/, "").trim();
+          if (name.length > 1) {
+            const slug = slugify3(aliasMap[name.toLowerCase()] ?? name);
+            if (slug)
+              foundInThisMemory.set(slug, { name, type: "person" });
+          }
+        }
+      }
+    }
+    if (enabledTypes.has("product")) {
+      for (const pattern of DEFAULT_ENTITY_PATTERNS.product) {
+        const matches = text.matchAll(new RegExp(pattern));
+        for (const match of matches) {
+          const raw = match[0].trim();
+          if (raw.length > 1) {
+            const slug = slugify3(aliasMap[raw.toLowerCase()] ?? raw);
+            if (slug)
+              foundInThisMemory.set(slug, { name: raw, type: "product" });
+          }
+        }
+      }
+    }
+    if (enabledTypes.has("organization")) {
+      for (const pattern of DEFAULT_ENTITY_PATTERNS.organization) {
+        const matches = text.matchAll(new RegExp(pattern));
+        for (const match of matches) {
+          const raw = match[0].trim();
+          if (raw.length > 1) {
+            const slug = slugify3(aliasMap[raw.toLowerCase()] ?? raw);
+            if (slug)
+              foundInThisMemory.set(slug, { name: raw, type: "organization" });
+          }
+        }
+      }
+    }
+    if (enabledTypes.has("file")) {
+      for (const pattern of DEFAULT_ENTITY_PATTERNS.file) {
+        const matches = text.matchAll(new RegExp(pattern));
+        for (const match of matches) {
+          const raw = match[0].trim();
+          if (raw.length > 1) {
+            const slug = slugify3(raw);
+            if (slug)
+              foundInThisMemory.set(slug, { name: raw, type: "file" });
+          }
+        }
+      }
+    }
+    if (enabledTypes.has("concept")) {
+      for (const pattern of DEFAULT_ENTITY_PATTERNS.concept) {
+        const matches = text.matchAll(new RegExp(pattern));
+        for (const match of matches) {
+          const raw = match[0].trim();
+          if (raw.length > 1) {
+            const slug = slugify3(aliasMap[raw.toLowerCase()] ?? raw);
+            if (slug)
+              foundInThisMemory.set(slug, { name: raw, type: "concept" });
+          }
+        }
+      }
+    }
+    const memoryEntitySlugs = [];
+    const memoryTime = memory.created_at || new Date().toISOString();
+    for (const [slug, { name, type: type2 }] of foundInThisMemory) {
+      memoryEntitySlugs.push(slug);
+      const existing = entityMap.get(slug);
+      if (existing) {
+        if (!existing.memoryRefs.includes(memory.id)) {
+          existing.memoryRefs.push(memory.id);
+        }
+        existing.metadata.mentionCount++;
+        if (memoryTime > existing.metadata.lastSeen)
+          existing.metadata.lastSeen = memoryTime;
+        if (memoryTime < existing.metadata.firstSeen)
+          existing.metadata.firstSeen = memoryTime;
+      } else {
+        entityMap.set(slug, {
+          id: slug,
+          name,
+          type: type2,
+          aliases: [name.toLowerCase()],
+          project: memory.project,
+          memoryRefs: [memory.id],
+          relatedEntities: [],
+          metadata: {
+            firstSeen: memoryTime,
+            lastSeen: memoryTime,
+            mentionCount: 1
+          }
+        });
+      }
+    }
+    memoryEntityMap.set(memory.id, memoryEntitySlugs);
+  }
+  const cooccurrences = new Map;
+  for (const [, entitySlugs] of memoryEntityMap) {
+    for (let i = 0;i < entitySlugs.length; i++) {
+      for (let j = i + 1;j < entitySlugs.length; j++) {
+        const a = entitySlugs[i];
+        const b = entitySlugs[j];
+        if (a === b)
+          continue;
+        if (!cooccurrences.has(a))
+          cooccurrences.set(a, new Map);
+        if (!cooccurrences.has(b))
+          cooccurrences.set(b, new Map);
+        const mapA = cooccurrences.get(a);
+        const mapB = cooccurrences.get(b);
+        mapA.set(b, (mapA.get(b) ?? 0) + 1);
+        mapB.set(a, (mapB.get(a) ?? 0) + 1);
+      }
+    }
+  }
+  for (const [slug, entity] of entityMap) {
+    const relMap = cooccurrences.get(slug);
+    if (relMap) {
+      for (const [otherSlug, strength] of relMap) {
+        if (strength >= cooccurrenceThreshold) {
+          entity.relatedEntities.push({ entityId: otherSlug, strength });
+        }
+      }
+      entity.relatedEntities.sort((a, b) => b.strength - a.strength);
+    }
+  }
+  return {
+    entities: Array.from(entityMap.values()),
+    memoryEntityMap
+  };
+}
+function saveEntities(memoryDir, entities) {
+  const filePath = join21(memoryDir, "entities.json");
+  mkdirSync11(memoryDir, { recursive: true });
+  writeFileSync11(filePath, JSON.stringify(entities, null, 2), "utf8");
+}
+function loadEntities(memoryDir) {
+  const filePath = join21(memoryDir, "entities.json");
+  if (!existsSync22(filePath))
+    return [];
+  try {
+    return JSON.parse(readFileSync20(filePath, "utf8"));
+  } catch {
+    return [];
+  }
+}
+function findEntity(memoryDir, id) {
+  const entities = loadEntities(memoryDir);
+  const cleanId = slugify3(id);
+  return entities.find((e) => e.id === cleanId || e.name.toLowerCase() === id.toLowerCase()) ?? null;
+}
+function findRelatedEntities(memoryDir, id) {
+  const entities = loadEntities(memoryDir);
+  const target = findEntity(memoryDir, id);
+  if (!target)
+    return [];
+  const entityIndex = new Map(entities.map((e) => [e.id, e]));
+  const results = [];
+  for (const rel of target.relatedEntities) {
+    const found = entityIndex.get(rel.entityId);
+    if (found) {
+      results.push({ entity: found, strength: rel.strength });
+    }
+  }
+  return results;
+}
+var DEFAULT_ENTITY_PATTERNS;
+var init_extractor = __esm(() => {
+  DEFAULT_ENTITY_PATTERNS = {
+    person: [
+      /@([a-zA-Z0-9_-]+)/g,
+      /\b(?:authored|reviewed|fixed|reported by)\s+([a-zA-Z0-9_-]+)/gi
+    ],
+    product: [
+      /\b(?:Next\.js|React|TypeScript|Node\.js|Bun|Vercel|Anthropic|OpenAI|PostgreSQL|Redis|Docker|Kubernetes|GraphQL|REST|gRPC|WebAssembly|WASM|Tailwind|ESLint|Prettier|Jest|Vitest|Playwright|Cypress)\b/gi,
+      /\b[a-zA-Z0-9_-]+\.js\b/gi
+    ],
+    organization: [
+      /\b(?:Vercel|Anthropic|OpenAI|Google|Microsoft|GitHub|GitLab|AWS|GCP|Azure|Meta|Facebook|Amazon|Netflix|Shopify|Stripe|Supabase|PlanetScale|Neon|Turso)\b/gi
+    ],
+    file: [
+      /(?:src|lib|test|docs|scripts)\/[a-zA-Z0-9_\/\.-]+\.(?:ts|tsx|js|jsx|json|yaml|yml|md|mdx)/g,
+      /\b(?:package\.json|tsconfig\.json|eslint\.config|prettier\.config)\b/gi
+    ],
+    concept: [
+      /\b(?:tree-indexed retrieval|wiki compilation|knapsack budgeting|progressive disclosure|semantic reasoning|vector search|BM25|hybrid search|entity extraction|memory lifecycle|consolidation|distillation)\b/gi
+    ]
+  };
+});
+
+// src/entities/index.ts
+var init_entities = __esm(() => {
+  init_extractor();
+});
+// src/pageindex/engine.ts
+import { existsSync as existsSync23, mkdirSync as mkdirSync12, readFileSync as readFileSync21, writeFileSync as writeFileSync12, rmSync as rmSync2, readdirSync as readdirSync8 } from "node:fs";
+import { join as join22 } from "node:path";
+function slugify4(text) {
+  return text.toLowerCase().replace(/[^a-z0-9]+/g, "-").replace(/^-+|-+$/g, "").slice(0, 50);
+}
+function buildPageIndex(content, options) {
+  const secrets = scanSecrets(content);
+  if (secrets.length > 0) {
+    throw new Error(`Probable secret detected in PageIndex input: ${secrets.join(", ")}`);
+  }
+  const project = options.project;
+  const title = options.title || content.slice(0, 50).trim() || "Untitled Document";
+  const maxDepth = options.maxDepth ?? 5;
+  const indexId = `idx_${Date.now()}_${slugify4(title) || "doc"}`;
+  const now = new Date().toISOString();
+  const lines = content.split(`
+`);
+  const rootNode = {
+    id: "node_root",
+    title,
+    summary: content.slice(0, 200).trim(),
+    content: content.slice(0, 500).trim(),
+    path: title,
+    depth: 0,
+    children: [],
+    citations: [{ doc: title, line: 1 }]
+  };
+  const stack = [{ node: rootNode, level: 0 }];
+  let totalNodes = 1;
+  let lineNumber = 0;
+  for (const line of lines) {
+    lineNumber++;
+    const headerMatch = line.match(/^(#{1,6})\s+(.+)$/);
+    if (headerMatch) {
+      const level = headerMatch[1].length;
+      const hTitle = headerMatch[2].trim();
+      if (level === 1 && stack.length === 1 && (hTitle.toLowerCase() === title.toLowerCase() || title === "Untitled Document")) {
+        stack[0].level = 1;
+        stack[0].node.title = hTitle;
+        continue;
+      }
+      while (stack.length > 1 && stack[stack.length - 1].level >= level) {
+        stack.pop();
+      }
+      const parent = stack[stack.length - 1].node;
+      const childNode = {
+        id: `node_${totalNodes++}`,
+        title: hTitle,
+        summary: "",
+        content: "",
+        path: `${parent.path} > ${hTitle}`,
+        depth: Math.min(level, maxDepth),
+        children: [],
+        citations: [{ doc: title, line: lineNumber }]
+      };
+      parent.children.push(childNode);
+      stack.push({ node: childNode, level });
+    } else {
+      const current = stack[stack.length - 1].node;
+      if (line.trim().length > 0) {
+        current.content = (current.content ? current.content + `
+` : "") + line;
+        if (!current.summary) {
+          current.summary = line.slice(0, 150).trim();
+        }
+      }
+    }
+  }
+  const doc2 = {
+    id: indexId,
+    title,
+    project,
+    builtAt: now,
+    depth: Math.min(stack.length, maxDepth),
+    totalNodes,
+    root: rootNode
+  };
+  if (options.memoryDir && !options.dryRun) {
+    const dir = join22(options.memoryDir, "pageindex", project);
+    mkdirSync12(dir, { recursive: true });
+    writeFileSync12(join22(dir, `${indexId}.json`), JSON.stringify(doc2, null, 2), "utf8");
+  }
+  return doc2;
+}
+function searchPageIndex(doc2, options) {
+  const query = options.query;
+  const maxNodes = options.maxNodes ?? 50;
+  const tokenBudget = options.tokenBudget ?? 4000;
+  const queryTokens = new Set(tokenize(query));
+  const scoredNodes = [];
+  let totalNodesSearched = 0;
+  function traverse(node) {
+    totalNodesSearched++;
+    const haystack = tokenize(`${node.title} ${node.summary} ${node.content} ${node.path}`);
+    const haySet = new Set(haystack);
+    let overlap = 0;
+    for (const t of queryTokens) {
+      if (haySet.has(t)) {
+        overlap++;
+      } else {
+        const matchedStem = haystack.some((h) => h.length >= 3 && t.length >= 3 && (h.startsWith(t.slice(0, 4)) || t.startsWith(h.slice(0, 4))));
+        if (matchedStem)
+          overlap += 0.8;
+      }
+    }
+    const baseScore = queryTokens.size > 0 ? overlap / queryTokens.size : 0;
+    const depthBonus = node.depth > 0 ? 0.1 * Math.min(node.depth, 3) : 0;
+    const score = baseScore > 0 ? baseScore + depthBonus : 0;
+    if (score > 0.05) {
+      scoredNodes.push({ node, score });
+    }
+    for (const child of node.children) {
+      traverse(child);
+    }
+  }
+  traverse(doc2.root);
+  scoredNodes.sort((a, b) => b.score - a.score);
+  const matched = scoredNodes.slice(0, maxNodes);
+  let tokensUsed = 0;
+  const results = [];
+  for (const item of matched) {
+    const approxTokens = Math.max(10, Math.ceil((item.node.title.length + item.node.summary.length + item.node.content.length) / 4));
+    if (tokensUsed + approxTokens > tokenBudget && results.length > 0)
+      break;
+    results.push({
+      nodeId: item.node.id,
+      title: item.node.title,
+      summary: item.node.summary || item.node.title,
+      path: item.node.path,
+      score: Number(item.score.toFixed(2)),
+      citations: item.node.citations
+    });
+    tokensUsed += approxTokens;
+  }
+  const topMatch = results[0];
+  const reasoning = topMatch ? `Query matches "${query}". Tree traversal found relevant node "${topMatch.title}" along path "${topMatch.path}" with relevance score ${topMatch.score}.` : `No high-confidence nodes found matching query "${query}".`;
+  return {
+    results,
+    reasoning,
+    totalNodesSearched,
+    tokensUsed
+  };
+}
+function loadPageIndex(memoryDir, project, indexId) {
+  const filePath = join22(memoryDir, "pageindex", project, `${indexId}.json`);
+  if (!existsSync23(filePath))
+    return null;
+  try {
+    return JSON.parse(readFileSync21(filePath, "utf8"));
+  } catch {
+    return null;
+  }
+}
+function deletePageIndex(memoryDir, project, indexId) {
+  const base = join22(memoryDir, "pageindex");
+  if (!existsSync23(base))
+    return { deletedCount: 0 };
+  let count = 0;
+  if (!project && !indexId) {
+    rmSync2(base, { recursive: true, force: true });
+    return { deletedCount: 1 };
+  }
+  if (project && !indexId) {
+    const pDir = join22(base, project);
+    if (existsSync23(pDir)) {
+      rmSync2(pDir, { recursive: true, force: true });
+      count++;
+    }
+  } else if (project && indexId) {
+    const file = join22(base, project, `${indexId}.json`);
+    if (existsSync23(file)) {
+      rmSync2(file, { force: true });
+      count++;
+    }
+  }
+  return { deletedCount: count };
+}
+var init_engine2 = __esm(() => {
+  init_secrets();
+  init_retrieval();
+});
+
+// src/pageindex/index.ts
+var init_pageindex = __esm(() => {
+  init_engine2();
+});
+// src/settings/defaults.ts
+var DEFAULT_SETTINGS;
+var init_defaults = __esm(() => {
+  DEFAULT_SETTINGS = {
+    version: 1,
+    retrieval: {
+      defaultMode: "hybrid",
+      defaultTokenBudget: 2000,
+      defaultDisclosureDepth: "L2",
+      treeMaxDepth: 5,
+      enableLLMReasoning: false,
+      hybridVectorWeight: 0.5,
+      hybridTreeWeight: 0.5
+    },
+    wiki: {
+      autoCompile: false,
+      compileIntervalMinutes: 60,
+      minClusterSize: 3,
+      clusteringThreshold: 0.5,
+      conceptOverlapThreshold: 0.3,
+      includeTypes: ["fix", "decision", "architecture", "operation", "failure", "constraint", "preference", "discovery"],
+      outputDir: "wiki",
+      incremental: true
+    },
+    entities: {
+      autoExtract: false,
+      minMentionsForPage: 2,
+      cooccurrenceThreshold: 2,
+      enabledTypes: ["person", "product", "organization", "file", "concept"],
+      customPatterns: {},
+      aliasMap: {}
+    },
+    pageindex: {
+      enabled: true,
+      maxIndexesPerProject: 100,
+      maxDepth: 5,
+      enableLLMReasoning: false,
+      localMode: true,
+      storagePath: "pageindex"
+    },
+    ui: {
+      defaultMode: "graph",
+      graphLayout: "force",
+      graphEngine: "auto",
+      theme: "auto",
+      animationEnabled: true,
+      sidebarWidth: 380,
+      detailPaneWidth: 420,
+      autoRefresh: true,
+      refreshIntervalMs: 30000
+    },
+    mcp: {
+      enabledTools: [
+        "memory_read",
+        "get_context",
+        "search",
+        "memory_capture",
+        "memory_harvest",
+        "memory_import_transcript",
+        "memory_search_transcripts",
+        "memory_get_user_profile",
+        "memory_set_user_profile",
+        "memory_recall",
+        "memory_confirm",
+        "memory_supersede",
+        "memory_link",
+        "memory_mark_stale",
+        "memory_reject",
+        "memory_delete",
+        "memory_audit",
+        "memory_detect_providers",
+        "memory_migrate",
+        "memory_detect_agents",
+        "memory_export",
+        "memory_import",
+        "memory_validate",
+        "graph_status",
+        "memory_core",
+        "memory_consolidate",
+        "memory_trace",
+        "memory_loops",
+        "memory_distill",
+        "memory_verify",
+        "memory_tree_search",
+        "memory_wiki_get",
+        "memory_wiki_search",
+        "memory_wiki_compile",
+        "memory_entities_get",
+        "memory_entities_search",
+        "memory_pageindex_index",
+        "memory_pageindex_search",
+        "memory_pageindex_import",
+        "memory_disconnect_pageindex",
+        "memory_settings_get",
+        "memory_settings_set"
+      ],
+      pageindexEnabled: true,
+      autoConnectAgents: false,
+      defaultProject: "default",
+      permissionsAutoApprove: false
+    },
+    skills: {
+      autoDistill: false,
+      minCount: 3,
+      outputDir: ".agents/skills",
+      dryRunByDefault: true
+    },
+    imports: {
+      allowedProviders: ["agentmemory", "beads", "mem0", "letta", "everos"],
+      secretScanEnabled: true,
+      overwriteByDefault: false,
+      dryRunByDefault: true
+    },
+    commands: {
+      defaultProject: "default",
+      confirmPrompt: true,
+      verboseByDefault: false,
+      outputFormat: "table"
+    }
+  };
+});
+
+// src/settings/schema.ts
+function validateSafePath(path, context = "Path") {
+  if (!path || typeof path !== "string") {
+    throw new Error(`${context}: invalid or missing path`);
+  }
+  if (path.includes("..") || path.startsWith("/") || path.includes("\\")) {
+    throw new Error(`${context}: path traversal not allowed ("${path}")`);
+  }
+  if (!SAFE_PATH_REGEX.test(path)) {
+    throw new Error(`${context}: path contains invalid characters ("${path}")`);
+  }
+}
+function validateSettings(settings) {
+  const errors3 = [];
+  if (settings.retrieval) {
+    const r = settings.retrieval;
+    if (r.defaultMode && !["tree", "vector", "hybrid"].includes(r.defaultMode)) {
+      errors3.push(`retrieval.defaultMode must be one of 'tree', 'vector', 'hybrid'`);
+    }
+    if (r.defaultTokenBudget !== undefined && (r.defaultTokenBudget <= 0 || !Number.isInteger(r.defaultTokenBudget))) {
+      errors3.push(`retrieval.defaultTokenBudget must be a positive integer`);
+    }
+    if (r.defaultDisclosureDepth && !["L1", "L2", "L3"].includes(r.defaultDisclosureDepth)) {
+      errors3.push(`retrieval.defaultDisclosureDepth must be one of 'L1', 'L2', 'L3'`);
+    }
+    if (r.hybridVectorWeight !== undefined && r.hybridTreeWeight !== undefined) {
+      if (Math.abs(r.hybridVectorWeight + r.hybridTreeWeight - 1) > 0.001) {
+        errors3.push(`retrieval weights (hybridVectorWeight + hybridTreeWeight) must sum to 1.0`);
+      }
+    }
+  }
+  if (settings.wiki) {
+    const w = settings.wiki;
+    if (w.outputDir) {
+      try {
+        validateSafePath(w.outputDir, "wiki.outputDir");
+      } catch (err) {
+        errors3.push(err.message);
+      }
+    }
+    if (w.minClusterSize !== undefined && w.minClusterSize <= 0) {
+      errors3.push(`wiki.minClusterSize must be positive`);
+    }
+  }
+  if (settings.pageindex) {
+    const p = settings.pageindex;
+    if (p.storagePath) {
+      try {
+        validateSafePath(p.storagePath, "pageindex.storagePath");
+      } catch (err) {
+        errors3.push(err.message);
+      }
+    }
+  }
+  if (settings.ui) {
+    const u = settings.ui;
+    if (u.defaultMode && !["tree", "graph", "timeline", "cluster"].includes(u.defaultMode)) {
+      errors3.push(`ui.defaultMode must be 'tree', 'graph', 'timeline', or 'cluster'`);
+    }
+    if (u.graphEngine && !["barnes-hut", "webgl", "auto"].includes(u.graphEngine)) {
+      errors3.push(`ui.graphEngine must be 'barnes-hut', 'webgl', or 'auto'`);
+    }
+  }
+  return {
+    valid: errors3.length === 0,
+    errors: errors3
+  };
+}
+var SAFE_PATH_REGEX;
+var init_schema2 = __esm(() => {
+  SAFE_PATH_REGEX = /^[a-zA-Z0-9_\/\.-]+$/;
+});
+
+// src/settings/loader.ts
+import { existsSync as existsSync24, mkdirSync as mkdirSync13, readFileSync as readFileSync22, writeFileSync as writeFileSync13 } from "node:fs";
+import { join as join23 } from "node:path";
+function getSettingsFilePath(memoryDir) {
+  return join23(memoryDir, "settings.json");
+}
+function loadSettings(memoryDir) {
+  const filePath = getSettingsFilePath(memoryDir);
+  if (!existsSync24(filePath)) {
+    return {
+      version: 1,
+      global: JSON.parse(JSON.stringify(DEFAULT_SETTINGS)),
+      projects: {}
+    };
+  }
+  try {
+    const raw = readFileSync22(filePath, "utf8");
+    const parsed = JSON.parse(raw);
+    return {
+      version: parsed.version || 1,
+      global: { ...DEFAULT_SETTINGS, ...parsed.global || {} },
+      projects: parsed.projects || {}
+    };
+  } catch {
+    return {
+      version: 1,
+      global: JSON.parse(JSON.stringify(DEFAULT_SETTINGS)),
+      projects: {}
+    };
+  }
+}
+function saveSettings(store, memoryDir) {
+  mkdirSync13(memoryDir, { recursive: true });
+  const filePath = getSettingsFilePath(memoryDir);
+  writeFileSync13(filePath, JSON.stringify(store, null, 2), "utf8");
+}
+function getSettings(memoryDir) {
+  return loadSettings(memoryDir).global;
+}
+function setSettings(memoryDir, partial2) {
+  const check = validateSettings(partial2);
+  if (!check.valid) {
+    throw new Error(`Invalid settings: ${check.errors.join("; ")}`);
+  }
+  const store = loadSettings(memoryDir);
+  store.global = deepMerge(store.global, partial2);
+  saveSettings(store, memoryDir);
+  return store.global;
+}
+function getProjectSettings(memoryDir, project) {
+  const store = loadSettings(memoryDir);
+  const proj = store.projects[project] ?? { project };
+  return { ...store.global, ...proj, project };
+}
+function setProjectSettings(memoryDir, project, partial2) {
+  const check = validateSettings(partial2);
+  if (!check.valid) {
+    throw new Error(`Invalid project settings: ${check.errors.join("; ")}`);
+  }
+  const store = loadSettings(memoryDir);
+  const existing = store.projects[project] ?? { project };
+  store.projects[project] = deepMerge(existing, partial2);
+  saveSettings(store, memoryDir);
+  return store.projects[project];
+}
+function resetSettings(memoryDir) {
+  const store = loadSettings(memoryDir);
+  store.global = JSON.parse(JSON.stringify(DEFAULT_SETTINGS));
+  saveSettings(store, memoryDir);
+  return store.global;
+}
+function resetProjectSettings(memoryDir, project) {
+  const store = loadSettings(memoryDir);
+  delete store.projects[project];
+  saveSettings(store, memoryDir);
+}
+function exportSettings(memoryDir) {
+  const store = loadSettings(memoryDir);
+  return JSON.stringify(store, null, 2);
+}
+function importSettings(memoryDir, json2) {
+  const parsed = JSON.parse(json2);
+  if (!parsed || typeof parsed !== "object") {
+    throw new Error("Invalid settings payload: expected object");
+  }
+  const store = loadSettings(memoryDir);
+  if (parsed.global) {
+    const check = validateSettings(parsed.global);
+    if (!check.valid) {
+      throw new Error(`Invalid global settings in import: ${check.errors.join("; ")}`);
+    }
+    store.global = deepMerge(store.global, parsed.global);
+  }
+  if (parsed.projects && typeof parsed.projects === "object") {
+    store.projects = { ...store.projects, ...parsed.projects };
+  }
+  saveSettings(store, memoryDir);
+  return store;
+}
+function deepMerge(target, source) {
+  const result = { ...target };
+  for (const key of Object.keys(source)) {
+    const sVal = source[key];
+    const tVal = target[key];
+    if (sVal !== undefined) {
+      if (typeof sVal === "object" && sVal !== null && !Array.isArray(sVal) && typeof tVal === "object" && tVal !== null && !Array.isArray(tVal)) {
+        result[key] = deepMerge(tVal, sVal);
+      } else {
+        result[key] = sVal;
+      }
+    }
+  }
+  return result;
+}
+var init_loader = __esm(() => {
+  init_defaults();
+  init_schema2();
+});
+
+// src/settings/watcher.ts
+var init_watcher = __esm(() => {
+  init_loader();
+});
+
+// src/settings/migration.ts
+var init_migration = () => {};
+
+// src/settings/index.ts
+var init_settings = __esm(() => {
+  init_defaults();
+  init_schema2();
+  init_loader();
+  init_watcher();
+  init_migration();
+});
+
+// src/settings.ts
+var init_settings2 = __esm(() => {
+  init_settings();
+});
+
+// src/mcp.ts
+var exports_mcp = {};
+__export(exports_mcp, {
+  runMcpServer: () => runMcpServer
+});
+async function runMcpServer() {
+  const targetDir = process.env.MUSE_MEMORY_PROJECT_DIR || process.env.PROJECT_ROOT || process.cwd();
+  const { root, memoryDir } = findOrCreateProjectRoot(targetDir);
+  const store = openStore(memoryDir);
+  const server = new Server({ name: "musememory", version: "1.2.0" }, { capabilities: { tools: {} } });
+  server.setRequestHandler(ListToolsRequestSchema, async () => ({
+    tools: [
+      {
+        name: "memory_read",
+        description: "Read a full memory entry by id",
+        inputSchema: {
+          type: "object",
+          properties: { id: { type: "string" } },
+          required: ["id"]
+        }
+      },
+      {
+        name: "get_context",
+        description: "Ranked active context entries for prompt injection (with optional token budget)",
+        inputSchema: {
+          type: "object",
+          properties: {
+            query: { type: "string" },
+            project: { type: "string" },
+            limit: { type: "number" },
+            token_budget: { type: "number", description: "Maximum token budget to consume for retrieved context" },
+            type: { type: "string" },
+            status: { type: "string" },
+            verified: { type: "boolean" },
+            depth: { type: "string", enum: ["L1", "L2", "L3"], description: "Progressive disclosure tier: L1 = id+title lines, L2 = title+content+tags (default), L3 = full raw entry" }
+          }
+        }
+      },
+      {
+        name: "search",
+        description: "Ranked search over memory entries",
+        inputSchema: {
+          type: "object",
+          properties: {
+            query: { type: "string" },
+            limit: { type: "number" },
+            token_budget: { type: "number", description: "Maximum token budget to consume" },
+            include_superseded: { type: "boolean" },
+            hybrid: { type: "boolean", description: "Use the offline vector+BM25 index (requires 'memory reindex'); falls back to live scoring when absent" },
+            type: { type: "string" },
+            status: { type: "string" },
+            verified: { type: "boolean" }
+          },
+          required: ["query"]
+        }
+      },
+      {
+        name: "memory_capture",
+        description: "Create a new memory entry with inline secret scan (refuses probable secrets)",
+        inputSchema: {
+          type: "object",
+          properties: {
+            content: { type: "string" },
+            project: { type: "string" },
+            title: { type: "string" },
+            tags: { type: "array", items: { type: "string" } },
+            type: { type: "string" },
+            confirmed: { type: "boolean" }
+          },
+          required: ["content", "project"]
+        }
+      },
+      {
+        name: "memory_harvest",
         description: "Distill conversation/text into structured outcome, fix, decision, and failure memories",
         inputSchema: {
           type: "object",
@@ -23052,6 +24991,157 @@ async function runMcpServer() {
           type: "object",
           properties: {}
         }
+      },
+      {
+        name: "memory_tree_search",
+        description: "Hierarchical tree-indexed reasoning search across partitioned memory shards",
+        inputSchema: {
+          type: "object",
+          properties: {
+            query: { type: "string", description: "Search query" },
+            project: { type: "string", description: "Filter by project" },
+            type: { type: "string", description: "Filter by memory type" },
+            token_budget: { type: "number", description: "Token budget limit" },
+            disclosure_depth: { type: "string", enum: ["L1", "L2", "L3"], description: "Disclosure depth tier" },
+            max_nodes: { type: "number", description: "Maximum nodes to return" }
+          },
+          required: ["query"]
+        }
+      },
+      {
+        name: "memory_wiki_get",
+        description: "Read a compiled wiki page (concept, entity, index, or log)",
+        inputSchema: {
+          type: "object",
+          properties: {
+            slug: { type: "string", description: "Page slug (e.g. 'index', 'log', or concept slug)" },
+            type: { type: "string", enum: ["concept", "entity", "index", "log"], description: "Optional page type" }
+          },
+          required: ["slug"]
+        }
+      },
+      {
+        name: "memory_wiki_search",
+        description: "List compiled wiki pages with optional filtering",
+        inputSchema: {
+          type: "object",
+          properties: {
+            project: { type: "string", description: "Filter by project" },
+            type: { type: "string", enum: ["concept", "entity", "index", "log"], description: "Filter by page type" }
+          }
+        }
+      },
+      {
+        name: "memory_wiki_compile",
+        description: "Compile confirmed memories into structured wiki markdown pages",
+        inputSchema: {
+          type: "object",
+          properties: {
+            project: { type: "string", description: "Project to compile (omit for all)" },
+            dry_run: { type: "boolean", description: "Preview without writing to disk" }
+          }
+        }
+      },
+      {
+        name: "memory_entities_get",
+        description: "Get detailed information about an extracted entity and its relationships",
+        inputSchema: {
+          type: "object",
+          properties: {
+            id: { type: "string", description: "Entity ID or name" },
+            include_related: { type: "boolean", description: "Include related entities in response" }
+          },
+          required: ["id"]
+        }
+      },
+      {
+        name: "memory_entities_search",
+        description: "List extracted entities by type or project",
+        inputSchema: {
+          type: "object",
+          properties: {
+            type: { type: "string", enum: ["person", "product", "organization", "file", "concept"], description: "Filter by entity type" },
+            project: { type: "string", description: "Filter by project" }
+          }
+        }
+      },
+      {
+        name: "memory_pageindex_index",
+        description: "Build a PageIndex-style hierarchical tree index from document/text for reasoning-based retrieval",
+        inputSchema: {
+          type: "object",
+          properties: {
+            content: { type: "string", description: "Document text content (max 10MB)" },
+            project: { type: "string", description: "Project to associate the index with" },
+            title: { type: "string", description: "Optional title for the index" },
+            maxDepth: { type: "number", description: "Max tree depth (default: 5)" },
+            dryRun: { type: "boolean", description: "Preview without persisting" }
+          },
+          required: ["content", "project"]
+        }
+      },
+      {
+        name: "memory_pageindex_search",
+        description: "Search a PageIndex tree index with reasoning-based retrieval",
+        inputSchema: {
+          type: "object",
+          properties: {
+            indexId: { type: "string", description: "Tree index ID to search" },
+            query: { type: "string", description: "Search query" },
+            project: { type: "string", description: "Project scope" },
+            tokenBudget: { type: "number", description: "Maximum token budget" },
+            maxDepth: { type: "number", description: "Max search depth" }
+          },
+          required: ["indexId", "query"]
+        }
+      },
+      {
+        name: "memory_pageindex_import",
+        description: "Import PageIndex search results/insights as memory entries",
+        inputSchema: {
+          type: "object",
+          properties: {
+            indexId: { type: "string", description: "Tree index ID" },
+            query: { type: "string", description: "Search query" },
+            project: { type: "string", description: "Project scope" },
+            type: { type: "string", description: "Memory type (default: discovery)" },
+            confirmed: { type: "boolean", description: "Auto-confirm imported entries" }
+          },
+          required: ["indexId", "query", "project"]
+        }
+      },
+      {
+        name: "memory_disconnect_pageindex",
+        description: "Disconnect PageIndex MCP tools and remove associated indexes",
+        inputSchema: {
+          type: "object",
+          properties: {
+            indexId: { type: "string", description: "Specific index to remove, or omit for all" },
+            project: { type: "string", description: "Project scope" }
+          }
+        }
+      },
+      {
+        name: "memory_settings_get",
+        description: "Read unified global or project configuration settings",
+        inputSchema: {
+          type: "object",
+          properties: {
+            project: { type: "string", description: "Optional project scope override" }
+          }
+        }
+      },
+      {
+        name: "memory_settings_set",
+        description: "Update unified global or project configuration settings",
+        inputSchema: {
+          type: "object",
+          properties: {
+            settings: { type: "object", description: "Settings object to merge" },
+            project: { type: "string", description: "Optional project scope override" }
+          },
+          required: ["settings"]
+        }
       }
     ]
   }));
@@ -23341,6 +25431,128 @@ Resolution: ${String(a.resolution)}`;
             return toolError(err instanceof Error ? err.message : String(err));
           }
         }
+        case "memory_tree_search": {
+          let index = loadTreeIndex(memoryDir);
+          if (!index) {
+            index = buildTreeIndex(store, memoryDir);
+          }
+          const res = searchTree(index, {
+            query: String(a.query),
+            project: a.project ? String(a.project) : undefined,
+            type: a.type ? String(a.type) : undefined,
+            tokenBudget: typeof a.token_budget === "number" ? a.token_budget : undefined,
+            disclosureDepth: a.disclosure_depth ? String(a.disclosure_depth) : undefined,
+            maxNodes: typeof a.max_nodes === "number" ? a.max_nodes : undefined
+          });
+          return toolResult(res);
+        }
+        case "memory_wiki_get": {
+          const page = getWikiPage(memoryDir, String(a.slug), a.type ? String(a.type) : undefined);
+          if (!page)
+            return toolError(`Wiki page '${a.slug}' not found.`);
+          return toolResult(page);
+        }
+        case "memory_wiki_search": {
+          const pages = listWikiPages(memoryDir, {
+            project: a.project ? String(a.project) : undefined,
+            type: a.type ? String(a.type) : undefined
+          });
+          return toolResult({ pages, count: pages.length });
+        }
+        case "memory_wiki_compile": {
+          const res = compileWiki(store, memoryDir, {
+            project: a.project ? String(a.project) : undefined,
+            dryRun: a.dry_run === true
+          });
+          return toolResult(res);
+        }
+        case "memory_entities_get": {
+          const ent = findEntity(memoryDir, String(a.id));
+          if (!ent)
+            return toolError(`Entity '${a.id}' not found.`);
+          if (a.include_related === true) {
+            const rel = findRelatedEntities(memoryDir, String(a.id));
+            return toolResult({ entity: ent, related: rel });
+          }
+          return toolResult(ent);
+        }
+        case "memory_entities_search": {
+          let entities = loadEntities(memoryDir);
+          if (a.type)
+            entities = entities.filter((e) => e.type === a.type);
+          if (a.project)
+            entities = entities.filter((e) => !e.project || e.project === a.project);
+          return toolResult({ entities, count: entities.length });
+        }
+        case "memory_pageindex_index": {
+          try {
+            const doc2 = buildPageIndex(String(a.content), {
+              project: String(a.project),
+              title: a.title ? String(a.title) : undefined,
+              maxDepth: typeof a.maxDepth === "number" ? a.maxDepth : undefined,
+              dryRun: a.dryRun === true,
+              memoryDir
+            });
+            return toolResult(doc2);
+          } catch (err) {
+            return toolError(err instanceof Error ? err.message : String(err));
+          }
+        }
+        case "memory_pageindex_search": {
+          const project = a.project ? String(a.project) : "default";
+          const doc2 = loadPageIndex(memoryDir, project, String(a.indexId));
+          if (!doc2)
+            return toolError(`PageIndex '${a.indexId}' not found for project '${project}'`);
+          const res = searchPageIndex(doc2, {
+            query: String(a.query),
+            maxDepth: typeof a.maxDepth === "number" ? a.maxDepth : undefined,
+            maxNodes: typeof a.maxNodes === "number" ? a.maxNodes : undefined,
+            tokenBudget: typeof a.tokenBudget === "number" ? a.tokenBudget : undefined
+          });
+          return toolResult(res);
+        }
+        case "memory_pageindex_import": {
+          const project = String(a.project);
+          const doc2 = loadPageIndex(memoryDir, project, String(a.indexId));
+          if (!doc2)
+            return toolError(`PageIndex '${a.indexId}' not found for project '${project}'`);
+          const search = searchPageIndex(doc2, { query: String(a.query), maxNodes: 5 });
+          const imported = [];
+          for (const item of search.results) {
+            const entry = proposeMemory(store, {
+              project,
+              title: item.title,
+              content: `${item.summary}
+
+Path: ${item.path}`,
+              type: a.type ? String(a.type) : "discovery",
+              confirmed: a.confirmed === true
+            });
+            imported.push(entry);
+          }
+          return toolResult({ importedCount: imported.length, entries: imported });
+        }
+        case "memory_disconnect_pageindex": {
+          const res = deletePageIndex(memoryDir, a.project ? String(a.project) : undefined, a.indexId ? String(a.indexId) : undefined);
+          return toolResult({ success: true, deletedIndexes: res.deletedCount });
+        }
+        case "memory_settings_get": {
+          const settings2 = a.project ? getProjectSettings(memoryDir, String(a.project)) : getSettings(memoryDir);
+          return toolResult(settings2);
+        }
+        case "memory_settings_set": {
+          try {
+            if (a.project) {
+              const updated = setProjectSettings(memoryDir, String(a.project), a.settings);
+              return toolResult(updated);
+            } else {
+              const updated = setSettings(memoryDir, a.settings);
+              return toolResult(updated);
+            }
+          } catch (err) {
+            return toolError(err instanceof Error ? err.message : String(err));
+          }
+        }
         default:
           return toolError(`unknown tool ${name}`);
       }
@@ -23394,6 +25606,11 @@ var init_mcp = __esm(() => {
   init_migrator();
   init_detect2();
   init_connect();
+  init_retrieval3();
+  init_wiki();
+  init_entities();
+  init_pageindex();
+  init_settings2();
 });
 
 // src/daemon.ts
@@ -23402,8 +25619,8 @@ __export(exports_daemon, {
   startHub: () => startHub
 });
 import { createServer as createServer2 } from "node:http";
-import { existsSync as existsSync20 } from "node:fs";
-import { join as join19 } from "node:path";
+import { existsSync as existsSync25 } from "node:fs";
+import { join as join24 } from "node:path";
 import { watch } from "node:fs";
 function startHub(port, memoryDir) {
   const clients = new Set;
@@ -23469,7 +25686,7 @@ data: ${JSON.stringify(event)}
     return clients.size;
   }
   if (memoryDir) {
-    const memoriesDir = join19(memoryDir, "memories");
+    const memoriesDir = join24(memoryDir, "memories");
     const armDebounced = (type2) => {
       if (debounceTimer)
         clearTimeout(debounceTimer);
@@ -23478,11 +25695,11 @@ data: ${JSON.stringify(event)}
       }, DEBOUNCE_MS);
     };
     try {
-      if (existsSync20(memoriesDir)) {
+      if (existsSync25(memoriesDir)) {
         watchers.push(watch(memoriesDir, () => armDebounced("memory.changed")));
       }
-      const currentMd = join19(memoryDir, "CURRENT.md");
-      if (existsSync20(currentMd)) {
+      const currentMd = join24(memoryDir, "CURRENT.md");
+      if (existsSync25(currentMd)) {
         watchers.push(watch(currentMd, () => armDebounced("constraints.changed")));
       }
     } catch {}
@@ -23515,22 +25732,22 @@ var DEBOUNCE_MS = 300;
 var init_daemon = () => {};
 
 // src/cli/ecosystem.ts
-import { join as join20 } from "node:path";
-import { existsSync as existsSync21, mkdirSync as mkdirSync9, writeFileSync as writeFileSync9 } from "node:fs";
+import { join as join25 } from "node:path";
+import { existsSync as existsSync26, mkdirSync as mkdirSync14, writeFileSync as writeFileSync14 } from "node:fs";
 async function handleInstallCommand({ positional, flags }) {
   const isGlobal = flags["global"] === "true" || flags["g"] === "true";
-  const targetDir = positional[0] ? join20(process.cwd(), positional[0]) : process.cwd();
-  const memoryDir = isGlobal ? getGlobalMemoryDir() : join20(targetDir, ".memory");
+  const targetDir = positional[0] ? join25(process.cwd(), positional[0]) : process.cwd();
+  const memoryDir = isGlobal ? getGlobalMemoryDir() : join25(targetDir, ".memory");
   const globalDir = getGlobalMemoryDir();
-  mkdirSync9(join20(memoryDir, "memories"), { recursive: true });
-  mkdirSync9(join20(globalDir, "memories"), { recursive: true });
-  const currentPath = join20(memoryDir, "CURRENT.md");
-  if (!existsSync21(currentPath)) {
-    writeFileSync9(currentPath, `# Active Project Constraints
+  mkdirSync14(join25(memoryDir, "memories"), { recursive: true });
+  mkdirSync14(join25(globalDir, "memories"), { recursive: true });
+  const currentPath = join25(memoryDir, "CURRENT.md");
+  if (!existsSync26(currentPath)) {
+    writeFileSync14(currentPath, `# Active Project Constraints
 `, "utf8");
   }
   const globalUserPath = userFilePath(globalDir);
-  if (!existsSync21(globalUserPath)) {
+  if (!existsSync26(globalUserPath)) {
     const { promptSingleSelect: promptSingleSelect2 } = await Promise.resolve().then(() => (init_prompt(), exports_prompt));
     const archetypeOptions = [
       { id: "developer", label: "Software Engineer / Developer", hint: "Code-first, direct, strict typing" },
@@ -23589,9 +25806,9 @@ async function handleUninstallCommand({ positional, flags }) {
   }
   if (purge) {
     const ctx = requireRoot(flags);
-    if (ctx && existsSync21(ctx.memoryDir) && !dryRun) {
-      const { rmSync } = await import("node:fs");
-      rmSync(ctx.memoryDir, { recursive: true, force: true });
+    if (ctx && existsSync26(ctx.memoryDir) && !dryRun) {
+      const { rmSync: rmSync3 } = await import("node:fs");
+      rmSync3(ctx.memoryDir, { recursive: true, force: true });
       console.log(`  [PURGED] Memory directory removed: ${ctx.memoryDir}`);
     }
   } else {
@@ -23602,13 +25819,13 @@ async function handleUninstallCommand({ positional, flags }) {
 }
 async function handleInitCommand({ positional, flags }) {
   const isGlobal = flags["global"] === "true";
-  const targetDir = positional[0] ? join20(process.cwd(), positional[0]) : process.cwd();
+  const targetDir = positional[0] ? join25(process.cwd(), positional[0]) : process.cwd();
   const memoryDirName = flags["legacy"] === "true" ? ".musememory" : ".memory";
-  const memoryDir = isGlobal ? getGlobalMemoryDir() : join20(targetDir, memoryDirName);
-  mkdirSync9(join20(memoryDir, "memories"), { recursive: true });
-  const currentPath = join20(memoryDir, "CURRENT.md");
-  if (!existsSync21(currentPath)) {
-    writeFileSync9(currentPath, `# Active Project Constraints
+  const memoryDir = isGlobal ? getGlobalMemoryDir() : join25(targetDir, memoryDirName);
+  mkdirSync14(join25(memoryDir, "memories"), { recursive: true });
+  const currentPath = join25(memoryDir, "CURRENT.md");
+  if (!existsSync26(currentPath)) {
+    writeFileSync14(currentPath, `# Active Project Constraints
 `, "utf8");
   }
   console.log(`Initialized memory store in ${memoryDir}`);
@@ -23833,28 +26050,28 @@ var init_ecosystem = __esm(() => {
 
 // src/hook.ts
 import {
-  existsSync as existsSync22,
-  readFileSync as readFileSync18,
-  writeFileSync as writeFileSync10,
-  mkdirSync as mkdirSync10,
-  readdirSync as readdirSync6,
+  existsSync as existsSync27,
+  readFileSync as readFileSync23,
+  writeFileSync as writeFileSync15,
+  mkdirSync as mkdirSync15,
+  readdirSync as readdirSync9,
   statSync as statSync7,
   renameSync as renameSync2,
   chmodSync
 } from "node:fs";
-import { join as join21, relative } from "node:path";
+import { join as join26, relative } from "node:path";
 function installGitHook(workspaceRoot) {
-  const gitDir = join21(workspaceRoot, ".git");
-  if (!existsSync22(gitDir)) {
+  const gitDir = join26(workspaceRoot, ".git");
+  if (!existsSync27(gitDir)) {
     return { installed: false, message: `no .git directory in ${workspaceRoot} — run inside a git repository` };
   }
-  const hooksDir = join21(gitDir, "hooks");
-  const hookPath = join21(hooksDir, "pre-commit");
-  if (existsSync22(hookPath)) {
+  const hooksDir = join26(gitDir, "hooks");
+  const hookPath = join26(hooksDir, "pre-commit");
+  if (existsSync27(hookPath)) {
     return { installed: false, path: hookPath, message: `pre-commit hook already exists at ${hookPath} — leaving it untouched` };
   }
-  mkdirSync10(hooksDir, { recursive: true });
-  writeFileSync10(hookPath, HOOK_SCRIPT, "utf8");
+  mkdirSync15(hooksDir, { recursive: true });
+  writeFileSync15(hookPath, HOOK_SCRIPT, "utf8");
   chmodSync(hookPath, 493);
   return { installed: true, path: hookPath, message: `installed pre-commit hook at ${hookPath}` };
 }
@@ -23865,14 +26082,14 @@ function globToRegex(glob) {
 function walkFiles(dir, root, regex, out = []) {
   let entries;
   try {
-    entries = readdirSync6(dir, { withFileTypes: true });
+    entries = readdirSync9(dir, { withFileTypes: true });
   } catch {
     return out;
   }
   for (const e of entries) {
     if (e.name === ".git" || e.name === "node_modules" || e.name === ".memory")
       continue;
-    const p = join21(dir, e.name);
+    const p = join26(dir, e.name);
     if (e.isDirectory()) {
       walkFiles(p, root, regex, out);
     } else if (regex.test(relative(root, p))) {
@@ -23882,9 +26099,9 @@ function walkFiles(dir, root, regex, out = []) {
   return out;
 }
 function newestInboxJsonl(inboxDir) {
-  if (!existsSync22(inboxDir))
+  if (!existsSync27(inboxDir))
     return null;
-  const files = readdirSync6(inboxDir).filter((f) => f.endsWith(".jsonl")).map((f) => join21(inboxDir, f)).filter((f) => statSync7(f).isFile());
+  const files = readdirSync9(inboxDir).filter((f) => f.endsWith(".jsonl")).map((f) => join26(inboxDir, f)).filter((f) => statSync7(f).isFile());
   if (files.length === 0)
     return null;
   return files.sort((a, b) => statSync7(b).mtimeMs - statSync7(a).mtimeMs)[0];
@@ -23899,7 +26116,7 @@ function harvestAuto(store, workspaceRoot, memoryDir, options = {}) {
       return result;
     }
   } else {
-    const inboxDir = join21(memoryDir, "inbox");
+    const inboxDir = join26(memoryDir, "inbox");
     const newest = newestInboxJsonl(inboxDir);
     if (!newest) {
       result.message = "no transcripts waiting in .memory/inbox/";
@@ -23907,20 +26124,20 @@ function harvestAuto(store, workspaceRoot, memoryDir, options = {}) {
     }
     files = [newest];
   }
-  const processedDir = join21(memoryDir, "inbox", "processed");
+  const processedDir = join26(memoryDir, "inbox", "processed");
   for (const file of files) {
     try {
-      const content = readFileSync18(file, "utf8");
+      const content = readFileSync23(file, "utf8");
       const res = importTranscript(store, content, {
         project: options.project ?? "inbox",
         confirmed: false,
         source: "harvest_auto"
       });
-      mkdirSync10(processedDir, { recursive: true });
+      mkdirSync15(processedDir, { recursive: true });
       const base = file.split("/").pop() ?? "transcript.jsonl";
-      let dest = join21(processedDir, base);
-      if (existsSync22(dest)) {
-        dest = join21(processedDir, base.replace(/\.jsonl$/, `_moved_${Date.now()}.jsonl`));
+      let dest = join26(processedDir, base);
+      if (existsSync27(dest)) {
+        dest = join26(processedDir, base.replace(/\.jsonl$/, `_moved_${Date.now()}.jsonl`));
       }
       renameSync2(file, dest);
       result.processed.push({ file, movedTo: dest, imported: res.imported });
@@ -23948,8 +26165,8 @@ var init_hook = __esm(() => {
 });
 
 // src/agentcontract.ts
-import { existsSync as existsSync23 } from "node:fs";
-import { join as join22 } from "node:path";
+import { existsSync as existsSync28 } from "node:fs";
+import { join as join27 } from "node:path";
 function parseAgentMemoryContract(markdown) {
   if (!markdown || !markdown.startsWith("---"))
     return null;
@@ -23981,17 +26198,17 @@ function parseAgentMemoryContract(markdown) {
 function resolveAgentFile(nameOrPath, workspaceRoot) {
   if (!nameOrPath)
     return null;
-  if (existsSync23(nameOrPath))
+  if (existsSync28(nameOrPath))
     return nameOrPath;
   const candidates = [
-    join22(workspaceRoot, ".agents", `${nameOrPath}.md`),
-    join22(workspaceRoot, ".memory", "agents", `${nameOrPath}.md`)
+    join27(workspaceRoot, ".agents", `${nameOrPath}.md`),
+    join27(workspaceRoot, ".memory", "agents", `${nameOrPath}.md`)
   ];
   const home = process.env.HOME;
   if (home)
-    candidates.push(join22(home, ".config", "opencode", "agents", `${nameOrPath}.md`));
+    candidates.push(join27(home, ".config", "opencode", "agents", `${nameOrPath}.md`));
   for (const c of candidates) {
-    if (existsSync23(c))
+    if (existsSync28(c))
       return c;
   }
   return null;
@@ -24001,8 +26218,8 @@ var init_agentcontract = __esm(() => {
 });
 
 // src/cli/retrieval.ts
-import { existsSync as existsSync24, readFileSync as readFileSync19 } from "node:fs";
-import { join as join23 } from "node:path";
+import { existsSync as existsSync29, readFileSync as readFileSync24 } from "node:fs";
+import { join as join28 } from "node:path";
 async function handleContextCommand({ positional, flags }) {
   let agentTypes;
   let agentTags;
@@ -24010,7 +26227,7 @@ async function handleContextCommand({ positional, flags }) {
     const file = resolveAgentFile(flags["for-agent"], flags["dir"] ?? process.cwd());
     if (!file)
       return usageError(`--for-agent: cannot resolve agent '${flags["for-agent"]}'`);
-    const contract = parseAgentMemoryContract(readFileSync19(file, "utf8"));
+    const contract = parseAgentMemoryContract(readFileSync24(file, "utf8"));
     if (contract) {
       agentTypes = contract.types;
       agentTags = contract.tags;
@@ -24067,6 +26284,28 @@ async function handleSearchCommand({ positional, flags }) {
     return usageError("search requires a query");
   const limit = parseInt(flags["limit"] ?? "10", 10) || 10;
   const tokenBudget = flags["token-budget"] ? parseInt(flags["token-budget"], 10) : undefined;
+  if (flags["tree"] === "true") {
+    let index = loadTreeIndex(ctx.memoryDir);
+    if (!index) {
+      console.log("no tree index found — building tree index now");
+      index = buildTreeIndex(ctx.store, ctx.memoryDir);
+    }
+    const treeRes = searchTree(index, {
+      query: positional[0],
+      project: flags["project"],
+      type: flags["type"],
+      maxNodes: limit,
+      tokenBudget,
+      disclosureDepth: flags["depth"] || "L2"
+    });
+    for (const r of treeRes.nodes) {
+      console.log(`- [score=${r.score.toFixed(3)}] ${r.node.title} (${r.node.project})`);
+      if (r.node.summary)
+        console.log(`  ${r.node.summary}`);
+    }
+    console.log(`source=tree-index count=${treeRes.nodes.length} tokens=${treeRes.tokensUsed}`);
+    return 0;
+  }
   if (flags["hybrid"] === "true") {
     const hybrid = hybridSearch(ctx.store, ctx.memoryDir, positional[0], { limit });
     if (!hybrid) {
@@ -24127,7 +26366,7 @@ async function handleHarvestCommand({ positional, flags }) {
   const project = flags["project"];
   if (!project)
     return usageError("harvest requires --project");
-  const rawText = existsSync24(target) ? readFileSync19(target, "utf8") : target;
+  const rawText = existsSync29(target) ? readFileSync24(target, "utf8") : target;
   const created = harvestMemory(ctx.store, {
     text: rawText,
     project,
@@ -24163,8 +26402,8 @@ async function handleSearchTranscriptCommand({ positional, flags }) {
   const filePath = positional[1];
   if (!query)
     return usageError("search-transcript requires <query> [file.jsonl]");
-  const targetFile = filePath ? filePath.startsWith("/") ? filePath : join23(process.cwd(), filePath) : join23(process.cwd(), "transcript.jsonl");
-  if (!existsSync24(targetFile)) {
+  const targetFile = filePath ? filePath.startsWith("/") ? filePath : join28(process.cwd(), filePath) : join28(process.cwd(), "transcript.jsonl");
+  if (!existsSync29(targetFile)) {
     return fail(`error: transcript file not found: ${targetFile}`);
   }
   const windowSize = flags["window"] ? parseInt(flags["window"], 10) : 2;
@@ -24180,7 +26419,7 @@ async function handleReindexCommand({ flags }) {
   const { rebuildIndex: rebuildIndex2, saveIndex: saveIndex2 } = await Promise.resolve().then(() => (init_vector(), exports_vector));
   const index = rebuildIndex2(ctx.store);
   saveIndex2(index, ctx.memoryDir);
-  console.log(`indexed ${Object.keys(index.entries).length} entries -> ${join23(ctx.memoryDir, "index.json")}`);
+  console.log(`indexed ${Object.keys(index.entries).length} entries -> ${join28(ctx.memoryDir, "index.json")}`);
   return 0;
 }
 async function handleHookCommand({ positional, flags }) {
@@ -24212,9 +26451,10 @@ async function handleHarvestAutoCommand({ flags }) {
   console.log(res.message);
   return 0;
 }
-var init_retrieval3 = __esm(() => {
+var init_retrieval4 = __esm(() => {
   init_retrieval();
   init_vector();
+  init_retrieval3();
   init_harvest();
   init_retrieval2();
   init_hook();
@@ -24337,6 +26577,278 @@ var init_persona = __esm(() => {
   init_shared();
 });
 
+// src/cli/wiki.ts
+function handleWikiCommand(parsed) {
+  const ctx = requireRoot(parsed.flags);
+  if (!ctx)
+    return 1;
+  const memoryDir = ctx.memoryDir;
+  const store = ctx.store;
+  const sub = parsed.positional[1] ?? "compile";
+  if (sub === "compile") {
+    const project = parsed.flags.project;
+    const dryRun = Boolean(parsed.flags["dry-run"]);
+    const typesStr = parsed.flags.types;
+    const includeTypes = typesStr ? typesStr.split(",") : undefined;
+    console.log(`Compiling wiki for ${project ?? "all projects"} (dryRun: ${dryRun})...`);
+    const result = compileWiki(store, memoryDir, { project, dryRun, includeTypes });
+    console.log(`Wiki compilation complete:`);
+    console.log(`  Pages created: ${result.pagesCreated.length}`);
+    console.log(`  Pages updated: ${result.pagesUpdated.length}`);
+    console.log(`  Log entries: ${result.logEntries.length}`);
+    if (result.errors.length > 0) {
+      console.warn(`Warnings/Errors:`);
+      for (const err of result.errors)
+        console.warn(`  - ${err}`);
+    }
+    return 0;
+  }
+  if (sub === "list" || sub === "ls") {
+    const project = parsed.flags.project;
+    const type2 = parsed.flags.type;
+    const pages = listWikiPages(memoryDir, { project, type: type2 });
+    if (pages.length === 0) {
+      console.log("No wiki pages found. Run `memory wiki compile` to generate pages.");
+      return 0;
+    }
+    console.log(`Wiki Pages (${pages.length}):`);
+    for (const page of pages) {
+      const typeBadge = `[${page.type}]`.padEnd(10);
+      console.log(`  ${typeBadge} ${page.slug} - "${page.title}" (${page.memoryRefs?.length ?? 0} memories)`);
+    }
+    return 0;
+  }
+  if (sub === "show" || sub === "get") {
+    const slug = parsed.positional[2];
+    if (!slug) {
+      console.error("Error: please specify a page slug (e.g. `memory wiki show index` or `memory wiki show concept-name`)");
+      return 2;
+    }
+    const type2 = parsed.flags.type;
+    const page = getWikiPage(memoryDir, slug, type2);
+    if (!page) {
+      console.error(`Error: wiki page "${slug}" not found.`);
+      return 1;
+    }
+    const content = "content" in page && page.content ? page.content : JSON.stringify(page, null, 2);
+    console.log(content);
+    return 0;
+  }
+  console.error(`Error: unknown wiki subcommand "${sub}". Supported: compile, list, show`);
+  return 2;
+}
+var init_wiki2 = __esm(() => {
+  init_shared();
+  init_wiki();
+});
+
+// src/cli/entities.ts
+function handleExtractEntitiesCommand(parsed) {
+  const ctx = requireRoot(parsed.flags);
+  if (!ctx)
+    return 1;
+  const memoryDir = ctx.memoryDir;
+  const store = ctx.store;
+  const project = parsed.flags.project;
+  const dryRun = Boolean(parsed.flags["dry-run"]);
+  let memories = list(store).filter((e) => e.status === "confirmed");
+  if (project)
+    memories = memories.filter((e) => e.project === project);
+  console.log(`Extracting entities from ${memories.length} confirmed memories (dryRun: ${dryRun})...`);
+  const result = extractEntitiesFromMemories(memories);
+  console.log(`Extracted ${result.entities.length} unique entities across memories:`);
+  const countsByType = new Map;
+  for (const ent of result.entities) {
+    countsByType.set(ent.type, (countsByType.get(ent.type) ?? 0) + 1);
+  }
+  for (const [type2, count] of countsByType) {
+    console.log(`  - ${type2}: ${count}`);
+  }
+  if (!dryRun) {
+    saveEntities(memoryDir, result.entities);
+    console.log(`Saved entity index to .memory/entities.json`);
+  }
+  return 0;
+}
+function handleEntitiesCommand(parsed) {
+  const ctx = requireRoot(parsed.flags);
+  if (!ctx)
+    return 1;
+  const memoryDir = ctx.memoryDir;
+  const sub = parsed.positional[1] ?? "list";
+  if (sub === "list" || sub === "ls") {
+    const type2 = parsed.flags.type;
+    const project = parsed.flags.project;
+    let entities = loadEntities(memoryDir);
+    if (entities.length === 0) {
+      console.log("No entities found. Run `memory extract-entities` to scan memories.");
+      return 0;
+    }
+    if (type2)
+      entities = entities.filter((e) => e.type === type2);
+    if (project)
+      entities = entities.filter((e) => !e.project || e.project === project);
+    console.log(`Entities (${entities.length}):`);
+    for (const ent of entities) {
+      const typeBadge = `[${ent.type}]`.padEnd(14);
+      console.log(`  ${typeBadge} ${ent.id} ("${ent.name}") - ${ent.memoryRefs.length} refs, ${ent.relatedEntities.length} related`);
+    }
+    return 0;
+  }
+  if (sub === "show" || sub === "get") {
+    const id = parsed.positional[2];
+    if (!id) {
+      console.error("Error: please specify an entity ID or name (e.g. `memory entities show nextjs`)");
+      return 2;
+    }
+    const entity = findEntity(memoryDir, id);
+    if (!entity) {
+      console.error(`Error: entity "${id}" not found.`);
+      return 1;
+    }
+    console.log(JSON.stringify(entity, null, 2));
+    return 0;
+  }
+  if (sub === "related") {
+    const id = parsed.positional[2];
+    if (!id) {
+      console.error("Error: please specify an entity ID or name (e.g. `memory entities related nextjs`)");
+      return 2;
+    }
+    const related = findRelatedEntities(memoryDir, id);
+    if (related.length === 0) {
+      console.log(`No related entities found for "${id}".`);
+      return 0;
+    }
+    console.log(`Related Entities for "${id}":`);
+    for (const { entity, strength } of related) {
+      console.log(`  - [strength ${strength}] ${entity.id} (${entity.type}: "${entity.name}")`);
+    }
+    return 0;
+  }
+  console.error(`Error: unknown entities subcommand "${sub}". Supported: list, show, related`);
+  return 2;
+}
+var init_entities2 = __esm(() => {
+  init_shared();
+  init_store();
+  init_entities();
+});
+
+// src/cli/settings.ts
+import { writeFileSync as writeFileSync16, readFileSync as readFileSync25 } from "node:fs";
+function handleSettingsCommand(parsed) {
+  const ctx = requireRoot(parsed.flags);
+  if (!ctx)
+    return 1;
+  const memoryDir = ctx.memoryDir;
+  const sub = parsed.positional[1] ?? "get";
+  const project = parsed.flags.project;
+  if (sub === "get") {
+    const key = parsed.positional[2];
+    const settings2 = project ? getProjectSettings(memoryDir, project) : getSettings(memoryDir);
+    if (key) {
+      const parts = key.split(".");
+      let val = settings2;
+      for (const p of parts) {
+        val = val?.[p];
+      }
+      if (val === undefined) {
+        console.error(`Error: setting key "${key}" not found.`);
+        return 1;
+      }
+      console.log(typeof val === "object" ? JSON.stringify(val, null, 2) : val);
+      return 0;
+    }
+    console.log(JSON.stringify(settings2, null, 2));
+    return 0;
+  }
+  if (sub === "set") {
+    const key = parsed.positional[2];
+    const rawVal = parsed.positional[3];
+    if (!key || rawVal === undefined) {
+      console.error("Error: please specify key and value (e.g. `memory settings set retrieval.defaultMode tree`)");
+      return 2;
+    }
+    let parsedVal = rawVal;
+    if (rawVal === "true")
+      parsedVal = true;
+    else if (rawVal === "false")
+      parsedVal = false;
+    else if (!isNaN(Number(rawVal)) && rawVal.trim() !== "")
+      parsedVal = Number(rawVal);
+    else {
+      try {
+        parsedVal = JSON.parse(rawVal);
+      } catch {}
+    }
+    const parts = key.split(".");
+    const updateObj = {};
+    let cur = updateObj;
+    for (let i = 0;i < parts.length - 1; i++) {
+      cur[parts[i]] = {};
+      cur = cur[parts[i]];
+    }
+    cur[parts[parts.length - 1]] = parsedVal;
+    try {
+      if (project) {
+        setProjectSettings(memoryDir, project, updateObj);
+        console.log(`Updated project "${project}" settings: ${key} = ${JSON.stringify(parsedVal)}`);
+      } else {
+        setSettings(memoryDir, updateObj);
+        console.log(`Updated global settings: ${key} = ${JSON.stringify(parsedVal)}`);
+      }
+      return 0;
+    } catch (err) {
+      console.error(`Error: ${err.message}`);
+      return 1;
+    }
+  }
+  if (sub === "reset") {
+    if (project) {
+      resetProjectSettings(memoryDir, project);
+      console.log(`Reset settings for project "${project}".`);
+    } else {
+      resetSettings(memoryDir);
+      console.log("Reset global settings to defaults.");
+    }
+    return 0;
+  }
+  if (sub === "export") {
+    const out = parsed.flags.out;
+    const json2 = exportSettings(memoryDir);
+    if (out) {
+      writeFileSync16(out, json2, "utf8");
+      console.log(`Exported settings to ${out}`);
+    } else {
+      console.log(json2);
+    }
+    return 0;
+  }
+  if (sub === "import") {
+    const file = parsed.positional[2];
+    if (!file) {
+      console.error("Error: please specify a JSON file to import (e.g. `memory settings import team-settings.json`)");
+      return 2;
+    }
+    try {
+      const raw = readFileSync25(file, "utf8");
+      importSettings(memoryDir, raw);
+      console.log(`Successfully imported settings from ${file}`);
+      return 0;
+    } catch (err) {
+      console.error(`Error importing settings: ${err.message}`);
+      return 1;
+    }
+  }
+  console.error(`Error: unknown settings subcommand "${sub}". Supported: get, set, reset, export, import`);
+  return 2;
+}
+var init_settings3 = __esm(() => {
+  init_shared();
+  init_settings2();
+});
+
 // src/nudge.ts
 function dueEntries(entries, now = Date.now()) {
   return entries.filter((e) => {
@@ -24406,16 +26918,16 @@ var init_nudge = __esm(() => {
 });
 
 // src/routines.ts
-import { readFileSync as readFileSync20, existsSync as existsSync25 } from "node:fs";
-import { join as join24 } from "node:path";
+import { readFileSync as readFileSync26, existsSync as existsSync30 } from "node:fs";
+import { join as join29 } from "node:path";
 function routinesPath(memoryDir) {
-  return join24(memoryDir, "routines.yaml");
+  return join29(memoryDir, "routines.yaml");
 }
 function loadRoutines(memoryDir) {
   const p = routinesPath(memoryDir);
-  if (!existsSync25(p))
+  if (!existsSync30(p))
     return { routines: {} };
-  const doc2 = yaml.load(readFileSync20(p, "utf8"), { schema: yaml.JSON_SCHEMA }) ?? {};
+  const doc2 = yaml.load(readFileSync26(p, "utf8"), { schema: yaml.JSON_SCHEMA }) ?? {};
   const routines = doc2.routines ?? {};
   for (const [name, r] of Object.entries(routines)) {
     if (!r || typeof r.schedule !== "string" || !r.schedule.trim()) {
@@ -24453,7 +26965,7 @@ var init_routines = __esm(() => {
 });
 
 // src/cli/lifecycle.ts
-import { writeFileSync as writeFileSync11, readFileSync as readFileSync21, existsSync as existsSync26 } from "node:fs";
+import { writeFileSync as writeFileSync17, readFileSync as readFileSync27, existsSync as existsSync31 } from "node:fs";
 async function handleProposeCommand({ positional, flags }) {
   const ctx = requireRoot(flags);
   if (!ctx)
@@ -24610,7 +27122,7 @@ async function handleExportCommand({ flags }) {
   const snapshot = exportSnapshot(ctx.store);
   const outPath = flags["out"];
   if (outPath) {
-    writeFileSync11(outPath, JSON.stringify(snapshot, null, 2), "utf8");
+    writeFileSync17(outPath, JSON.stringify(snapshot, null, 2), "utf8");
     console.log(`exported ${snapshot.total} memories to ${outPath}`);
   } else {
     console.log(JSON.stringify(snapshot, null, 2));
@@ -24624,9 +27136,9 @@ async function handleImportCommand({ positional, flags }) {
   const file = positional[0];
   if (!file)
     return usageError("import requires <file.json>");
-  if (!existsSync26(file))
+  if (!existsSync31(file))
     return fail(`error: file ${file} does not exist`);
-  const raw = JSON.parse(readFileSync21(file, "utf8"));
+  const raw = JSON.parse(readFileSync27(file, "utf8"));
   const res = importSnapshot(ctx.store, raw, { overwrite: flags["overwrite"] === "true" });
   if (res.errors.length > 0) {
     console.error(`import encountered errors:`);
@@ -24975,11 +27487,11 @@ var init_lifecycle2 = __esm(() => {
 // src/cli.ts
 var exports_cli = {};
 __export(exports_cli, {
-  requireRoot: () => requireRoot,
-  printEntry: () => printEntry,
-  parseFlags: () => parseFlags,
+  USAGE: () => USAGE,
   main: () => main,
-  USAGE: () => USAGE
+  parseFlags: () => parseFlags,
+  printEntry: () => printEntry,
+  requireRoot: () => requireRoot
 });
 async function main(argv) {
   if (argv.length === 0 || argv[0] === "--help" || argv[0] === "-h" || argv[0] === "help") {
@@ -25091,6 +27603,14 @@ async function main(argv) {
       return handleVerifyCommand(parsed);
     case "session":
       return handleSessionCommand(parsed);
+    case "wiki":
+      return handleWikiCommand(parsed);
+    case "extract-entities":
+      return handleExtractEntitiesCommand(parsed);
+    case "entities":
+      return handleEntitiesCommand(parsed);
+    case "settings":
+      return handleSettingsCommand(parsed);
     default:
       console.error(`Error: unknown command "${cmd}"`);
       return 2;
@@ -25130,12 +27650,18 @@ Core Memory Lifecycle Commands:
 
 Context & Retrieval Commands:
   context [query] [--limit N] [--token-budget N] [--depth L1|L2|L3] Top-ranked prompt injection context
-  search <query> [--limit N] [--token-budget N] [--hybrid] Scored token retrieval (hybrid: offline vector+BM25 via index)
+  search <query> [--limit N] [--token-budget N] [--hybrid] [--tree] Scored token retrieval (hybrid: vector+BM25, tree: hierarchical reasoning)
   reindex                       Rebuild the local vector index (.memory/index.json) for hybrid search
   recall [query]                Search active/confirmed memories with filters
   search-transcript <query> [file.jsonl] [--window N] Full-text transcript search with bookends
 
-Persona & Constraints Commands:
+Wiki & Entity Knowledge Compounding:
+  wiki [compile|list|show]      Compile memories into structured Obsidian-compatible markdown wiki pages
+  extract-entities [--dry-run]  Extract named entities (persons, products, orgs, files, concepts) from memories
+  entities [list|show|related]  Inspect extracted knowledge graph entities and co-occurrences
+
+Persona, Settings & Constraints Commands:
+  settings [get|set|reset|export|import] Manage unified global and project configuration
   user [get|init|set] [--global] Manage USER.md persona & working preferences
   current [get|set]             Manage CURRENT.md active project constraints
   core [tier] [--set T|--remove|--show] Manage CORE.md permanent partitions (identity|directives|conventions|context)
@@ -25160,8 +27686,11 @@ Ecosystem, Migration & Connectivity:
 var init_cli = __esm(() => {
   init_shared();
   init_ecosystem();
-  init_retrieval3();
+  init_retrieval4();
   init_persona();
+  init_wiki2();
+  init_entities2();
+  init_settings3();
   init_lifecycle2();
 });