multimodel-dev-os 2.0.1 → 2.6.0

package/bin/multimodel-dev-os.js

@@ -6,8 +6,9 @@
  */
 
 import { existsSync, mkdirSync, readFileSync, writeFileSync, readdirSync, statSync } from 'fs';
-import { join, dirname, resolve } from 'path';
+import { join, dirname, resolve, relative, isAbsolute, basename } from 'path';
 import { fileURLToPath } from 'url';
+import { createHash } from 'crypto';
 
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = dirname(__filename);
@@ -42,7 +43,14 @@ function parseArgs(args) {
     threshold: null,
     registry: null,
     allRegistries: false,
-    release: false
+    release: false,
+    type: 'unknown',
+    tags: '',
+    files: '',
+    title: null,
+    approved: false,
+    intelligence: false,
+    onboarding: false
   };
 
   for (let i = 0; i < args.length; i++) {
@@ -67,6 +75,10 @@ function parseArgs(args) {
       params.allRegistries = true;
     } else if (arg === '--release') {
       params.release = true;
+    } else if (arg === '--intelligence') {
+      params.intelligence = true;
+    } else if (arg === '--onboarding') {
+      params.onboarding = true;
     } else if (arg === '--json') {
       params.json = true;
     } else if (arg === '--threshold') {
@@ -81,8 +93,16 @@ function parseArgs(args) {
       params.stack = args[++i];
     } else if (arg === '--mobile') {
       params.mobile = args[++i];
-    } else if (arg === '--ai-app') {
-      params.aiApp = args[++i];
+    } else if (arg === '--type') {
+      params.type = args[++i];
+    } else if (arg === '--tags') {
+      params.tags = args[++i];
+    } else if (arg === '--files') {
+      params.files = args[++i];
+    } else if (arg === '--title') {
+      params.title = args[++i];
+    } else if (arg === '--approved') {
+      params.approved = true;
     } else if (!params.command && !arg.startsWith('-')) {
       params.command = arg;
     }
@@ -90,6 +110,24 @@ function parseArgs(args) {
   return params;
 }
 
+function getPositionalArgs(args) {
+  const positionalArgs = [];
+  for (let i = 0; i < args.length; i++) {
+    const arg = args[i];
+    if (arg === '--target' || arg === '-t' || arg === '--template' || arg === '--adapter' || arg === '-a' ||
+        arg === '--threshold' || arg === '--registry' || arg === '--model-preset' || arg === '--agent' ||
+        arg === '--stack' || arg === '--mobile' || arg === '--type' || arg === '--tags' || arg === '--files' ||
+        arg === '--title') {
+      i++; // skip next arg (its value)
+    } else if (arg.startsWith('-')) {
+      // it's a flag, skip
+    } else {
+      positionalArgs.push(arg);
+    }
+  }
+  return positionalArgs;
+}
+
 const params = parseArgs(ARGS);
 const COMMAND = params.command;
 
@@ -143,6 +181,74 @@ if (COMMAND === 'init') {
   handleInit(params);
 } else if (COMMAND === 'verify') {
   handleVerify(params);
+} else if (COMMAND === 'scan') {
+  handleScan(params);
+} else if (COMMAND === 'memory') {
+  const sub = ARGS[1];
+  if (sub === 'build') {
+    handleMemoryBuild(params);
+  } else if (sub === 'refresh') {
+    handleMemoryRefresh(params);
+  } else if (sub === 'diff') {
+    handleMemoryDiff(params);
+  } else {
+    console.error(`\x1b[31mError: Please specify a memory subcommand: build, refresh, or diff.\x1b[0m`);
+    console.error(`Example: node bin/multimodel-dev-os.js memory build`);
+    process.exit(1);
+  }
+} else if (COMMAND === 'feedback') {
+  const sub = ARGS[1];
+  if (sub === 'add') {
+    handleFeedbackAdd(params);
+  } else if (sub === 'list') {
+    handleFeedbackList(params);
+  } else if (sub === 'summarize') {
+    handleFeedbackSummarize(params);
+  } else {
+    console.error(`\x1b[31mError: Please specify a feedback subcommand: add, list, or summarize.\x1b[0m`);
+    console.log(`Example: node bin/multimodel-dev-os.js feedback add "Prefer CSS Modules"`);
+    process.exit(1);
+  }
+} else if (COMMAND === 'improve') {
+  const positional = getPositionalArgs(ARGS);
+  const sub = positional[1];
+  if (sub === 'propose') {
+    handleImprovePropose(params);
+  } else if (sub === 'review') {
+    handleImproveReview(params);
+  } else if (sub === 'status') {
+    handleImproveStatus(params);
+  } else if (sub === 'validate') {
+    const proposalFile = positional[2];
+    if (!proposalFile) {
+      console.error(`\x1b[31mError: Please specify a proposal file path.\x1b[0m`);
+      console.log(`Example: node bin/multimodel-dev-os.js improve validate .ai/proposals/proposal-xxxx.md`);
+      process.exit(1);
+    }
+    handleImproveValidate(proposalFile, params);
+  } else if (sub === 'diff') {
+    const proposalFile = positional[2];
+    if (!proposalFile) {
+      console.error(`\x1b[31mError: Please specify a proposal file path.\x1b[0m`);
+      console.log(`Example: node bin/multimodel-dev-os.js improve diff .ai/proposals/proposal-xxxx.md`);
+      process.exit(1);
+    }
+    handleImproveDiff(proposalFile, params);
+  } else if (sub === 'apply') {
+    const proposalFile = positional[2];
+    if (!proposalFile) {
+      console.error(`\x1b[31mError: Please specify a proposal file path.\x1b[0m`);
+      console.log(`Example: node bin/multimodel-dev-os.js improve apply .ai/proposals/proposal-xxxx.md --approved`);
+      process.exit(1);
+    }
+    handleImproveApply(proposalFile, params);
+  } else if (sub === 'log') {
+    handleImproveLog(params);
+  } else {
+    console.error(`\x1b[31mError: Please specify an improve subcommand: propose, review, status, validate, diff, apply, or log.\x1b[0m`);
+    console.log(`Example: node bin/multimodel-dev-os.js improve validate .ai/proposals/proposal-xxxx.md`);
+    process.exit(1);
+  }
 } else if (COMMAND === 'templates' || COMMAND === 'list-templates') {
   handleListTemplates(params);
 } else if (COMMAND === 'show-template') {
@@ -213,6 +319,96 @@ if (COMMAND === 'init') {
     process.exit(1);
   }
   handleShowSkill(sName, params);
+} else if (COMMAND === 'status') {
+  handleStatus(params);
+} else if (COMMAND === 'workflow') {
+  const positional = getPositionalArgs(ARGS);
+  const sub = positional[1];
+  if (sub === 'list') {
+    handleWorkflowList(params);
+  } else if (sub === 'show') {
+    const wName = positional[2];
+    if (!wName) {
+      console.error('\x1b[31mError: Please specify a workflow name.\x1b[0m');
+      console.log('Example: node bin/multimodel-dev-os.js workflow show repo-health');
+      process.exit(1);
+    }
+    handleWorkflowShow(wName, params);
+  } else if (sub === 'plan') {
+    const wName = positional[2];
+    if (!wName) {
+      console.error('\x1b[31mError: Please specify a workflow name.\x1b[0m');
+      console.log('Example: node bin/multimodel-dev-os.js workflow plan repo-health');
+      process.exit(1);
+    }
+    handleWorkflowPlan(wName, params);
+  } else if (sub === 'run') {
+    const wName = positional[2];
+    if (!wName) {
+      console.error('\x1b[31mError: Please specify a workflow name.\x1b[0m');
+      console.log('Example: node bin/multimodel-dev-os.js workflow run repo-health');
+      process.exit(1);
+    }
+    handleWorkflowRun(wName, params);
+  } else {
+    console.error('\x1b[31mError: Please specify a workflow subcommand: list, show, plan, or run.\x1b[0m');
+    console.log('Example: node bin/multimodel-dev-os.js workflow list');
+    process.exit(1);
+  }
+} else if (COMMAND === 'handoff') {
+  const positional = getPositionalArgs(ARGS);
+  const sub = positional[1];
+  if (sub === 'build') {
+    handleHandoffBuild(params);
+  } else if (sub === 'show') {
+    handleHandoffShow(params);
+  } else {
+    console.error('\x1b[31mError: Please specify a handoff subcommand: build or show.\x1b[0m');
+    console.log('Example: node bin/multimodel-dev-os.js handoff build');
+    process.exit(1);
+  }
+} else if (COMMAND === 'onboard') {
+  const positional = getPositionalArgs(ARGS);
+  const sub = positional[1];
+  if (sub === 'analyze') {
+    handleOnboardAnalyze(params);
+  } else if (sub === 'recommend') {
+    handleOnboardRecommend(params);
+  } else if (sub === 'plan') {
+    handleOnboardPlan(params);
+  } else if (sub === 'apply') {
+    handleOnboardApply(params);
+  } else if (sub === 'status') {
+    handleOnboardStatus(params);
+  } else {
+    console.error('\x1b[31mError: Please specify an onboard subcommand: analyze, recommend, plan, apply, or status.\x1b[0m');
+    console.log('Example: node bin/multimodel-dev-os.js onboard analyze');
+    process.exit(1);
+  }
+} else if (COMMAND === 'adapter') {
+  const positional = getPositionalArgs(ARGS);
+  const sub = positional[1];
+  if (sub === 'status') {
+    handleAdapterStatus(params);
+  } else if (sub === 'diff') {
+    const aName = positional[2];
+    if (!aName) {
+      console.error('\x1b[31mError: Please specify an adapter name (e.g. cursor, claude) or "all".\x1b[0m');
+      process.exit(1);
+    }
+    handleAdapterDiff(aName, params);
+  } else if (sub === 'sync') {
+    const aName = positional[2];
+    if (!aName) {
+      console.error('\x1b[31mError: Please specify an adapter name or "all" to sync.\x1b[0m');
+      process.exit(1);
+    }
+    handleAdapterSync(aName, params);
+  } else {
+    console.error('\x1b[31mError: Please specify an adapter subcommand: status, diff, or sync.\x1b[0m');
+    console.log('Example: node bin/multimodel-dev-os.js adapter status');
+    process.exit(1);
+  }
 } else {
   console.error(`\x1b[31mUnknown command: ${COMMAND}\x1b[0m`);
   showHelp();
@@ -225,6 +421,15 @@ function showHelp() {
   console.log('Usage: node bin/multimodel-dev-os.js <command> [options]\n');
   console.log('Commands:');
   console.log('  init              Initialize a project with configs and adapters');
+  console.log('  scan              Scan project structure and framework signals');
+  console.log('  status            Show compact dashboard summarizing repository intelligence state');
+  console.log('  memory <subcmd>   Manage hash-compressed codebase memory (subcmd: build, refresh, diff)');
+  console.log('  feedback <subcmd> Manage developer feedback loops (subcmd: add, list, summarize)');
+  console.log('  improve <subcmd>  Manage codebase self-improvement proposals (subcmd: propose, review, status, validate, diff, apply, log)');
+  console.log('  workflow <subcmd> Orchestrate read-only development workflow pipelines (subcmd: list, show, plan, run)');
+  console.log('  handoff <subcmd>  Compile or print token-compressed agent session summaries (subcmd: build, show)');
+  console.log('  onboard <subcmd>  Safely integrate MultiModel Dev OS into existing repo (subcmd: analyze, recommend, plan, apply, status)');
+  console.log('  adapter <subcmd>  Manage and sync rule/settings files for IDE adapters (subcmd: status, diff, sync)');
   console.log('  verify            Validate structural integrity of an existing project');
   console.log('  templates         List all built-in template profiles with details');
   console.log('  list-templates    Alias for templates command');
@@ -244,10 +449,17 @@ function showHelp() {
   console.log('  show-skill <s>    View prompt contents of target workspace skill <s>\n');
   console.log('Options:');
   console.log('  -t, --target <path>     Target folder destination (default: current working directory)');
+  console.log('  --type <type>           Feedback classification (correction, preference, bug, etc.)');
+  console.log('  --tags <list>           Comma-separated descriptor tags for feedback');
+  console.log('  --files <list>          Comma-separated target files for feedback');
+  console.log('  --title <text>          Specifies title for codebase improvement proposal');
+  console.log('  --approved              Explicitly approve and execute proposal/onboarding/adapter sync writes');
   console.log('  --template <name>       Template profile: nextjs-saas, expo-react-native-android, etc.');
   console.log('  -a, --adapter <name>    Inject specific adapter: cursor, claude, vscode, gemini, etc.');
   console.log('  --caveman               Use minimal-token templates (~79% fewer tokens)');
   console.log('  --tokens                Run a deeper token-sink size analysis during doctor checkup');
+  console.log('  --intelligence          Run diagnostic checkup of repository intelligence config');
+  console.log('  --onboarding            Run diagnostic checkup of repository onboarding setup');
   console.log('  --json                  Output raw JSON data for listing commands (models, adapters, templates)');
   console.log('  --threshold <val>       Set custom size threshold for doctor tokens checks (e.g. 50KB)');
   console.log('  --registry <path>       Override default registry (for templates/adapters list or check)');
@@ -376,7 +588,7 @@ function handleInit(options) {
   }
 
   // Fallback to copy default global folders if files aren't already included by template
-  const globalAiSubdirs = ['context', 'agents', 'skills', 'prompts', 'checks', 'templates', 'session-logs'];
+  const globalAiSubdirs = ['context', 'agents', 'skills', 'prompts', 'checks', 'templates', 'session-logs', 'registries', 'proposals', 'intelligence'];
   globalAiSubdirs.forEach(sub => {
     const globalPath = join(sourceRoot, '.ai', sub);
     if (existsSync(globalPath)) {
@@ -573,9 +785,11 @@ function handleVerify(options) {
   console.log('\n=====================================');
   if (failed > 0) {
     console.error(`  \x1b[31mVerification FAILED. [Passed: ${passed}, Failed: ${failed}]\x1b[0m\n`);
+    if (options && options.noExit) return false;
     process.exit(1);
   } else {
     console.log(`  \x1b[32mVerification PASSED. [All ${passed} files present]\x1b[0m\n`);
+    if (options && options.noExit) return true;
     process.exit(0);
   }
 }
@@ -589,6 +803,14 @@ function handleDoctor(options) {
     handleDoctorRelease(options);
     return;
   }
+  if (options.intelligence) {
+    handleDoctorIntelligence(options);
+    return;
+  }
+  if (options.onboarding) {
+    handleDoctorOnboarding(options);
+    return;
+  }
   console.log(`\n🩺 \x1b[36mRunning advisory doctor checkup in: ${options.target}\x1b[0m\n`);
 
   let warnings = 0;
@@ -669,7 +891,7 @@ function handleDoctor(options) {
     checkAdapter('vscode', '.vscode/settings.json');
     checkAdapter('antigravity', '.gemini/settings.json');
   } else {
-    warn('.ai/config.yaml is missing from project. Active adapters could not be audited.');
+    warn('MultiModel Dev OS is not initialized (.ai/config.yaml is missing). Run "npx multimodel-dev-os init" to bootstrap configuration.');
   }
 
   // 6. Token sinks audit
@@ -1394,3 +1616,2646 @@ function handleDoctorRelease(options) {
     console.log('  \x1b[32m✔ Release hygiene checks PASSED successfully!\x1b[0m\n');
   }
 }
+
+// ==========================================
+// --- v2.2.0 Intelligence Layer Helpers & Handlers ---
+// ==========================================
+
+function hashFile(filePath) {
+  try {
+    const data = readFileSync(filePath);
+    return createHash('sha256').update(data).digest('hex');
+  } catch (e) {
+    return '';
+  }
+}
+
+function shouldIgnorePath(relPath) {
+  const normalized = relPath.replace(/\\/g, '/');
+  const segments = normalized.split('/');
+  
+  // Ignored folders
+  const ignoredFolders = ['node_modules', '.git', 'dist', 'build', '.next', 'coverage'];
+  for (const seg of segments) {
+    if (ignoredFolders.includes(seg)) return true;
+  }
+  
+  // Special check for docs/.vitepress/dist and docs/.vitepress/cache
+  if (normalized.includes('docs/.vitepress/dist') || normalized.includes('docs/.vitepress/cache')) {
+    return true;
+  }
+  
+  // Ignore generated memory and intelligence runtime files
+  if (
+    normalized.endsWith('memory.hash.json') ||
+    normalized.endsWith('memory.summary.md') ||
+    normalized.endsWith('feedback-log.jsonl') ||
+    normalized.endsWith('learning-rules.md') ||
+    normalized.endsWith('apply-log.jsonl') ||
+    normalized.includes('.ai/proposals/')
+  ) {
+    return true;
+  }
+  
+  // Skip secret-like files/patterns
+  const lower = normalized.toLowerCase();
+  const filePart = segments[segments.length - 1];
+  if (
+    lower.endsWith('.env') ||
+    lower.includes('.env.') ||
+    lower.endsWith('.npmrc') ||
+    lower.endsWith('.keystore') ||
+    lower.endsWith('.jks') ||
+    lower.endsWith('.key') ||
+    lower.endsWith('.pem') ||
+    lower.endsWith('credentials.json') ||
+    filePart === 'id_rsa' ||
+    filePart === 'id_dsa' ||
+    filePart === 'id_ecdsa' ||
+    filePart === 'id_ed25519'
+  ) {
+    return true;
+  }
+  
+  return false;
+}
+
+function scanTarget(targetDir) {
+  const files = [];
+  let ignoredCount = 0;
+  
+  function walk(dir) {
+    if (!existsSync(dir)) return;
+    const items = readdirSync(dir);
+    for (const item of items) {
+      const fullPath = join(dir, item);
+      const relPath = relative(targetDir, fullPath).replace(/\\/g, '/');
+      
+      if (shouldIgnorePath(relPath)) {
+        ignoredCount++;
+        continue;
+      }
+      
+      try {
+        const stat = statSync(fullPath);
+        if (stat.isDirectory()) {
+          walk(fullPath);
+        } else if (stat.isFile()) {
+          files.push({
+            relPath,
+            fullPath,
+            size: stat.size,
+            mtime: stat.mtime.toISOString()
+          });
+        }
+      } catch (e) {
+        // Skip inaccessible files or broken links
+      }
+    }
+  }
+  
+  walk(targetDir);
+  return { files, ignoredCount };
+}
+
+function detectFrameworkSignals(files, targetDir) {
+  const signals = [];
+  const hasFile = (name) => files.some(f => f.relPath.toLowerCase() === name.toLowerCase());
+  
+  if (hasFile('next.config.js') || hasFile('next.config.mjs')) signals.push('Next.js');
+  if (hasFile('nuxt.config.js') || hasFile('nuxt.config.ts')) signals.push('Nuxt.js');
+  if (hasFile('wp-config.php') || hasFile('index.php')) signals.push('WordPress/PHP');
+  if (hasFile('tsconfig.json')) signals.push('TypeScript');
+  if (hasFile('package.json')) {
+    signals.push('Node.js');
+    try {
+      const pkg = JSON.parse(readFileSync(join(targetDir, 'package.json'), 'utf8'));
+      const deps = { ...pkg.dependencies, ...pkg.devDependencies };
+      if (deps['react']) signals.push('React');
+      if (deps['vue']) signals.push('Vue');
+      if (deps['svelte']) signals.push('Svelte');
+      if (deps['expo']) signals.push('Expo');
+      if (deps['react-native']) signals.push('React Native');
+      if (deps['vite']) signals.push('Vite');
+      if (deps['express']) signals.push('Express');
+      if (deps['angular']) signals.push('Angular');
+    } catch (e) {}
+  }
+  if (hasFile('requirements.txt') || hasFile('pyproject.toml')) signals.push('Python');
+  if (hasFile('cargo.toml')) signals.push('Rust');
+  if (hasFile('gemfile')) signals.push('Ruby');
+  if (hasFile('go.mod')) signals.push('Go');
+  
+  if (signals.length === 0) signals.push('Generic/Unknown');
+  return [...new Set(signals)];
+}
+
+function detectDependencySignals(files, targetDir) {
+  const signals = [];
+  const hasFile = (name) => files.some(f => f.relPath.toLowerCase() === name.toLowerCase());
+  
+  if (hasFile('package-lock.json')) signals.push('npm');
+  else if (hasFile('yarn.lock')) signals.push('Yarn');
+  else if (hasFile('pnpm-lock.yaml')) signals.push('pnpm');
+  else if (hasFile('bun.lockb')) signals.push('Bun');
+  
+  if (hasFile('requirements.txt')) signals.push('pip');
+  if (hasFile('poetry.lock')) signals.push('Poetry');
+  if (hasFile('cargo.lock')) signals.push('Cargo');
+  
+  return signals;
+}
+
+function detectAiDevOsSignals(files) {
+  const signals = [];
+  const hasFile = (name) => files.some(f => f.relPath.toLowerCase() === name.toLowerCase());
+  
+  if (hasFile('agents.md')) signals.push('AGENTS.md');
+  if (hasFile('memory.md')) signals.push('MEMORY.md');
+  if (hasFile('tasks.md')) signals.push('TASKS.md');
+  if (hasFile('runbook.md')) signals.push('RUNBOOK.md');
+  if (hasFile('.ai/config.yaml')) signals.push('.ai/config.yaml');
+  
+  const hasPrefix = (prefix) => files.some(f => f.relPath.startsWith(prefix));
+  if (hasPrefix('.ai/templates/')) signals.push('Templates Registry');
+  if (hasPrefix('.ai/adapters/')) signals.push('Adapters Registry');
+  if (hasPrefix('.ai/skills/')) signals.push('Skills Registry');
+  if (hasPrefix('.ai/intelligence/')) signals.push('Intelligence Layer');
+  if (hasPrefix('.ai/policies/')) signals.push('Policy Layer');
+  if (hasPrefix('.ai/registries/')) signals.push('Registry Layer');
+  
+  return signals;
+}
+
+function detectRisks(files, targetDir) {
+  const risks = [];
+  const gitignorePath = join(targetDir, '.gitignore');
+  const gitignoreContent = existsSync(gitignorePath) ? readFileSync(gitignorePath, 'utf8') : '';
+  
+  const hasFolder = (name) => files.some(f => f.relPath.split('/')[0] === name);
+  
+  if (hasFolder('node_modules') && !gitignoreContent.includes('node_modules')) {
+    risks.push({
+      file_pattern: 'node_modules/',
+      risk_description: 'Large token-sink directory node_modules/ is present but not ignored in .gitignore.',
+      severity: 'high'
+    });
+  }
+  
+  files.forEach(f => {
+    if (f.relPath.endsWith('.json') && f.relPath.toLowerCase().includes('config') && f.size > 50000) {
+      risks.push({
+        file_pattern: f.relPath,
+        risk_description: `Large config file (${(f.size / 1024).toFixed(1)} KB) might contain sensitive parameters or inflate prompt context.`,
+        severity: 'medium'
+      });
+    }
+  });
+  
+  return risks;
+}
+
+function buildMemoryIndex(targetDir) {
+  const { files, ignoredCount } = scanTarget(targetDir);
+  const framework_signals = detectFrameworkSignals(files, targetDir);
+  const dependency_signals = detectDependencySignals(files, targetDir);
+  const ai_dev_os_signals = detectAiDevOsSignals(files);
+  const risks = detectRisks(files, targetDir);
+  
+  const file_fingerprints = {};
+  files.forEach(f => {
+    file_fingerprints[f.relPath] = {
+      hash: hashFile(f.fullPath),
+      size: f.size,
+      last_modified: f.mtime
+    };
+  });
+  
+  const recommended_next_steps = [];
+  if (ai_dev_os_signals.length === 0) {
+    recommended_next_steps.push('Run init to bootstrap MultiModel Dev OS.');
+  }
+  if (risks.some(r => r.severity === 'high')) {
+    recommended_next_steps.push('Address Gitignore configuration to exclude large directories (node_modules/ or build artifacts).');
+  }
+  recommended_next_steps.push('Use validate or doctor to check structural integrity.');
+  recommended_next_steps.push('Commit the .ai/ intelligence policies to share constraints across AI agents.');
+  
+  return {
+    generated_at: new Date().toISOString(),
+    project_root: targetDir.replace(/\\/g, '/'),
+    file_count: files.length,
+    ignored_count: ignoredCount,
+    file_fingerprints,
+    framework_signals,
+    dependency_signals,
+    ai_dev_os_signals,
+    risks,
+    recommended_next_steps
+  };
+}
+
+function writeMemoryFiles(targetDir, index) {
+  const intelDir = join(targetDir, '.ai', 'intelligence');
+  if (!existsSync(intelDir)) {
+    mkdirSync(intelDir, { recursive: true });
+  }
+  
+  const hashJsonPath = join(intelDir, 'memory.hash.json');
+  writeFileSync(hashJsonPath, JSON.stringify(index, null, 2), 'utf8');
+  
+  const summaryMdPath = join(intelDir, 'memory.summary.md');
+  
+  let md = `# MultiModel Dev OS Repository Memory Summary\n\n`;
+  md += `**Generated At:** ${index.generated_at}\n`;
+  md += `**Project Root:** ${index.project_root}\n`;
+  md += `**Total Files:** ${index.file_count} (Ignored: ${index.ignored_count})\n\n`;
+  
+  md += `## Framework & Environment Signals\n`;
+  md += `- **Frameworks/Languages:** ${index.framework_signals.join(', ') || 'None'}\n`;
+  md += `- **Package Manager/Build:** ${index.dependency_signals.join(', ') || 'None'}\n`;
+  md += `- **AI Dev OS Integration:** ${index.ai_dev_os_signals.join(', ') || 'None'}\n\n`;
+  
+  md += `## Codebase Fingerprints\n`;
+  md += `| File Path | Size (Bytes) | Hash (SHA-256) |\n`;
+  md += `|---|---|---|\n`;
+  
+  const entries = Object.entries(index.file_fingerprints);
+  entries.forEach(([filePath, fp]) => {
+    md += `| ${filePath} | ${fp.size} | \`${fp.hash.substring(0, 12)}...\` |\n`;
+  });
+  md += `\n`;
+  
+  if (index.risks.length > 0) {
+    md += `## Detected Risks\n`;
+    index.risks.forEach(r => {
+      md += `- **[${r.severity.toUpperCase()}]** \`${r.file_pattern}\`: ${r.risk_description}\n`;
+    });
+    md += `\n`;
+  }
+  
+  md += `## Recommended Next Steps\n`;
+  index.recommended_next_steps.forEach(step => {
+    md += `- ${step}\n`;
+  });
+  
+  writeFileSync(summaryMdPath, md, 'utf8');
+}
+
+function diffMemory(targetDir) {
+  const hashJsonPath = join(targetDir, '.ai', 'intelligence', 'memory.hash.json');
+  if (!existsSync(hashJsonPath)) {
+    return null;
+  }
+  
+  let existing;
+  try {
+    existing = JSON.parse(readFileSync(hashJsonPath, 'utf8'));
+  } catch (e) {
+    return null;
+  }
+  
+  const currentScan = buildMemoryIndex(targetDir);
+  
+  const added = [];
+  const removed = [];
+  const changed = [];
+  let unchangedCount = 0;
+  
+  const currentFp = currentScan.file_fingerprints;
+  const existingFp = existing.file_fingerprints || {};
+  
+  Object.keys(currentFp).forEach(file => {
+    if (!existingFp[file]) {
+      added.push(file);
+    } else if (existingFp[file].hash !== currentFp[file].hash || existingFp[file].size !== currentFp[file].size) {
+      changed.push(file);
+    } else {
+      unchangedCount++;
+    }
+  });
+  
+  Object.keys(existingFp).forEach(file => {
+    if (!currentFp[file]) {
+      removed.push(file);
+    }
+  });
+  
+  return { added, removed, changed, unchangedCount, currentScan };
+}
+
+function handleScan(options) {
+  console.log(`\n🔍 \x1b[36mCodebase Scan target: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+  
+  const { files, ignoredCount } = scanTarget(options.target);
+  const frameworkSignals = detectFrameworkSignals(files, options.target);
+  const dependencySignals = detectDependencySignals(files, options.target);
+  const aiDevOsSignals = detectAiDevOsSignals(files);
+  const risks = detectRisks(files, options.target);
+  
+  console.log(`\n\x1b[33mProject Stats:\x1b[0m`);
+  console.log(`  File Count:    ${files.length}`);
+  console.log(`  Ignored Files: ${ignoredCount}`);
+  
+  console.log(`\n\x1b[33mFramework & Language Signals:\x1b[0m`);
+  frameworkSignals.forEach(sig => console.log(`  - ${sig}`));
+  
+  console.log(`\n\x1b[33mPackage Manager & Dependency Signals:\x1b[0m`);
+  dependencySignals.forEach(sig => console.log(`  - ${sig}`));
+  
+  console.log(`\n\x1b[33mMultiModel Dev OS Files:\x1b[0m`);
+  if (aiDevOsSignals.length > 0) {
+    aiDevOsSignals.forEach(sig => console.log(`  - ${sig}`));
+  } else {
+    console.log(`  No MultiModel Dev OS files detected. Run \x1b[36mmit --template general-app\x1b[0m to initialize.`);
+  }
+  
+  if (risks.length > 0) {
+    console.log(`\n\x1b[31mDetected Risks:\x1b[0m`);
+    risks.forEach(r => console.log(`  - [${r.severity.toUpperCase()}] ${r.file_pattern}: ${r.risk_description}`));
+  } else {
+    console.log(`\n\x1b[32m✔ No high/medium risks detected in repository structure.\x1b[0m`);
+  }
+  
+  console.log();
+}
+
+function handleMemoryBuild(options) {
+  console.log(`\n🧠 \x1b[36mBuilding Codebase Memory in: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+  
+  const index = buildMemoryIndex(options.target);
+  writeMemoryFiles(options.target, index);
+  
+  console.log(`  \x1b[32mCREATE:\x1b[0m .ai/intelligence/memory.hash.json`);
+  console.log(`  \x1b[32mCREATE:\x1b[0m .ai/intelligence/memory.summary.md`);
+  console.log(`\n✔ Memory index built successfully! [Files indexed: ${index.file_count}]`);
+  
+  console.log(`\n\x1b[33mRecommended Next Steps:\x1b[0m`);
+  index.recommended_next_steps.forEach(step => console.log(`  - ${step}`));
+  console.log();
+}
+
+function handleMemoryRefresh(options) {
+  console.log(`\n🧠 \x1b[36mRefreshing Codebase Memory in: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+  
+  const diff = diffMemory(options.target);
+  if (!diff) {
+    console.log('  No existing memory index found. Building fresh index...');
+    handleMemoryBuild(options);
+    return;
+  }
+  
+  writeMemoryFiles(options.target, diff.currentScan);
+  
+  console.log(`  \x1b[32mUPDATE:\x1b[0m .ai/intelligence/memory.hash.json`);
+  console.log(`  \x1b[32mUPDATE:\x1b[0m .ai/intelligence/memory.summary.md`);
+  
+  console.log(`\n✔ Memory index refreshed successfully!`);
+  console.log(`  Added:     ${diff.added.length}`);
+  console.log(`  Removed:   ${diff.removed.length}`);
+  console.log(`  Changed:   ${diff.changed.length}`);
+  console.log(`  Unchanged: ${diff.unchangedCount}`);
+  console.log();
+}
+
+function handleMemoryDiff(options) {
+  console.log(`\n🧠 \x1b[36mDiffing Codebase State against Memory in: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+  
+  const diff = diffMemory(options.target);
+  if (!diff) {
+    console.error(`\x1b[31mError: No existing memory index found. Run 'memory build' first.\x1b[0m\n`);
+    if (options && options.noExit) return false;
+    process.exit(1);
+  }
+  
+  console.log(`\n\x1b[33mMemory Diff Summary:\x1b[0m`);
+  console.log(`  Added Files:   ${diff.added.length}`);
+  console.log(`  Removed Files: ${diff.removed.length}`);
+  console.log(`  Changed Files: ${diff.changed.length}`);
+  console.log(`  Unchanged:     ${diff.unchangedCount}`);
+  
+  if (diff.added.length > 0) {
+    console.log(`\n\x1b[32mAdded Files:\x1b[0m`);
+    diff.added.forEach(f => console.log(`  + ${f}`));
+  }
+  if (diff.removed.length > 0) {
+    console.log(`\n\x1b[31mRemoved Files:\x1b[0m`);
+    diff.removed.forEach(f => console.log(`  - ${f}`));
+  }
+  if (diff.changed.length > 0) {
+    console.log(`\n\x1b[33mChanged Files:\x1b[0m`);
+    diff.changed.forEach(f => console.log(`  M ${f}`));
+  }
+  
+  console.log();
+}
+
+function handleFeedbackAdd(options) {
+  const intelDir = join(options.target, '.ai', 'intelligence');
+  if (!options.dryRun && !existsSync(intelDir)) {
+    mkdirSync(intelDir, { recursive: true });
+  }
+
+  const addIdx = process.argv.indexOf('add');
+  const text = (addIdx !== -1 && process.argv[addIdx + 1] && !process.argv[addIdx + 1].startsWith('-')) ? process.argv[addIdx + 1] : null;
+
+  if (!text) {
+    console.error(`\x1b[31mError: Please provide feedback text.\x1b[0m`);
+    console.log(`Example: node bin/multimodel-dev-os.js feedback add "Prefer CSS modules"`);
+    process.exit(1);
+  }
+
+  const uuid = createHash('md5').update(new Date().toISOString() + Math.random().toString()).digest('hex').substring(0, 16);
+  const tagsStr = options.tags || '';
+  const tags = tagsStr ? tagsStr.split(',').map(t => t.trim()) : [];
+  const filesStr = options.files || '';
+  const related_files = filesStr ? filesStr.split(',').map(f => f.trim()) : [];
+
+  const rawRecord = {
+    id: `fb-${uuid}`,
+    created_at: new Date().toISOString(),
+    source: 'user',
+    type: options.type || 'unknown',
+    text: text,
+    tags: tags,
+    related_files: related_files
+  };
+
+  rawRecord.hash = createHash('sha256').update(JSON.stringify(rawRecord)).digest('hex');
+
+  const recordLine = JSON.stringify(rawRecord) + '\n';
+  const feedbackLogPath = join(intelDir, 'feedback-log.jsonl');
+
+  if (options.dryRun) {
+    console.log(`\x1b[36m[DRY-RUN] WOULD APPEND TO ${feedbackLogPath}:\x1b[0m`);
+    console.log(recordLine.trim());
+  } else {
+    try {
+      let isDuplicate = false;
+      if (existsSync(feedbackLogPath)) {
+        const lines = readFileSync(feedbackLogPath, 'utf8').split('\n');
+        for (const line of lines) {
+          if (!line.trim()) continue;
+          try {
+            const entry = JSON.parse(line);
+            if (entry.text === text && JSON.stringify(entry.related_files) === JSON.stringify(related_files)) {
+              isDuplicate = true;
+              break;
+            }
+          } catch (e) {}
+        }
+      }
+      if (isDuplicate) {
+        console.log(`\x1b[33mFeedback already exists. Skipping duplicate entry.\x1b[0m`);
+        return;
+      }
+
+      writeFileSync(feedbackLogPath, recordLine, { flag: 'a', encoding: 'utf8' });
+      console.log(`✔ Feedback successfully added (ID: ${rawRecord.id})`);
+    } catch (e) {
+      console.error(`\x1b[31mError: Failed to write to feedback-log.jsonl: ${e.message}\x1b[0m`);
+      process.exit(1);
+    }
+  }
+}
+
+function handleFeedbackList(options) {
+  const feedbackLogPath = join(options.target, '.ai', 'intelligence', 'feedback-log.jsonl');
+  if (!existsSync(feedbackLogPath)) {
+    console.log('No feedback logged yet.');
+    return;
+  }
+
+  try {
+    const content = readFileSync(feedbackLogPath, 'utf8');
+    const lines = content.split('\n').filter(l => l.trim() !== '');
+    if (lines.length === 0) {
+      console.log('No feedback logged yet.');
+      return;
+    }
+
+    console.log(`\n🧠 \x1b[36mLogged Feedback Entries\x1b[0m`);
+    console.log('==================================================');
+    lines.forEach(line => {
+      try {
+        const entry = JSON.parse(line);
+        console.log(`\n\x1b[32m* [${entry.type || 'unknown'}] (${entry.id})\x1b[0m`);
+        console.log(`  \x1b[37mText:\x1b[0m ${entry.text}`);
+        if (entry.tags && entry.tags.length > 0) {
+          console.log(`  \x1b[33mTags:\x1b[0m ${entry.tags.join(', ')}`);
+        }
+        if (entry.related_files && entry.related_files.length > 0) {
+          console.log(`  \x1b[33mFiles:\x1b[0m ${entry.related_files.join(', ')}`);
+        }
+        console.log(`  \x1b[33mLogged:\x1b[0m ${entry.created_at}`);
+      } catch (e) {}
+    });
+    console.log();
+  } catch (e) {
+    console.error(`\x1b[31mError: Failed to read feedback log: ${e.message}\x1b[0m`);
+    process.exit(1);
+  }
+}
+
+function handleFeedbackSummarize(options) {
+  const intelDir = join(options.target, '.ai', 'intelligence');
+  const feedbackLogPath = join(intelDir, 'feedback-log.jsonl');
+  if (!existsSync(feedbackLogPath)) {
+    console.log('No feedback logs found to compile.');
+    return;
+  }
+
+  try {
+    const content = readFileSync(feedbackLogPath, 'utf8');
+    const lines = content.split('\n').filter(l => l.trim() !== '');
+    if (lines.length === 0) {
+      console.log('No feedback logs found to compile.');
+      return;
+    }
+
+    const categories = {};
+    lines.forEach(line => {
+      try {
+        const entry = JSON.parse(line);
+        const cat = entry.type || 'general';
+        if (!categories[cat]) categories[cat] = [];
+        categories[cat].push(entry);
+      } catch (e) {}
+    });
+
+    let md = `# Compiled Learning Rules\n\n`;
+    md += `*Generated automatically by MultiModel Dev OS. Do not modify manually.*\n\n`;
+    md += `**Last compiled:** ${new Date().toISOString()}\n`;
+    md += `**Total source feedback items:** ${lines.length}\n\n`;
+    md += `## Active Instructions\n\n`;
+
+    Object.keys(categories).forEach(cat => {
+      md += `### Category: ${cat}\n`;
+      categories[cat].forEach(entry => {
+        const pattern = entry.related_files && entry.related_files.length > 0 ? entry.related_files.join(', ') : '*';
+        md += `*   **Pattern:** \`${pattern}\`\n`;
+        md += `    *   **Rule:** ${entry.text}\n`;
+        md += `    *   **Source ID:** \`${entry.id}\`\n\n`;
+      });
+    });
+
+    const targetRulesPath = join(intelDir, 'learning-rules.md');
+    if (options.dryRun) {
+      console.log(`\x1b[36m[DRY-RUN] WOULD WRITE TO ${targetRulesPath}:\x1b[0m`);
+      console.log(md);
+    } else {
+      writeFileSync(targetRulesPath, md, 'utf8');
+      console.log(`✔ Compiled ${lines.length} feedback items into learning rules in .ai/intelligence/learning-rules.md`);
+    }
+  } catch (e) {
+    console.error(`\x1b[31mError: Failed to compile learning rules: ${e.message}\x1b[0m`);
+    process.exit(1);
+  }
+}
+
+function handleImprovePropose(options) {
+  const proposalsDir = join(options.target, '.ai', 'proposals');
+  if (!options.dryRun && !existsSync(proposalsDir)) {
+    mkdirSync(proposalsDir, { recursive: true });
+  }
+
+  const now = new Date();
+  const pad = (n) => String(n).padStart(2, '0');
+  const dateStr = `${now.getFullYear()}${pad(now.getMonth() + 1)}${pad(now.getDate())}`;
+  const timeStr = `${pad(now.getHours())}${pad(now.getMinutes())}${pad(now.getSeconds())}`;
+  const timestamp = `${dateStr}-${timeStr}`;
+  const id = `proposal-${timestamp}`;
+
+  const title = options.title || 'Auto-detected codebase optimization';
+  let problem = 'No specific problems detected.';
+  let evidence = 'N/A';
+  let riskLevel = 'low';
+  let affectedFiles = [];
+  let suggestedChange = 'No code suggestions compiled.';
+  let verifyCommand = 'npm run verify';
+  let rollbackPlan = 'git checkout -- .';
+
+  const gitignorePath = join(options.target, '.gitignore');
+  const agentsPath = join(options.target, 'AGENTS.md');
+
+  if (!existsSync(gitignorePath)) {
+    problem = 'Missing .gitignore file in target workspace. AI agents may scan large build directories and run out of token context.';
+    evidence = `.gitignore file is not present at root directory: ${options.target}`;
+    affectedFiles = ['.gitignore'];
+    suggestedChange = 'Create a standard .gitignore file to exclude node_modules, build/ and dist/ directories.';
+    rollbackPlan = 'git clean -fd .gitignore';
+  } else if (!existsSync(agentsPath)) {
+    problem = 'Missing AGENTS.md document in target workspace. Models will lack stack-specific implementation blueprints.';
+    evidence = `AGENTS.md file is not present at root directory: ${options.target}`;
+    affectedFiles = ['AGENTS.md'];
+    suggestedChange = 'Create an AGENTS.md document specifying the codebase development guidelines and framework profiles.';
+    rollbackPlan = 'git clean -fd AGENTS.md';
+  } else {
+    problem = 'Outdated codebase memory index. Memory files need to be refreshed to sync with recent local changes.';
+    evidence = 'Current memory.hash.json represents a previous commit state.';
+    affectedFiles = ['.ai/intelligence/memory.hash.json', '.ai/intelligence/memory.summary.md'];
+    suggestedChange = 'Refresh codebase memory index using multimodel-dev-os memory refresh CLI command.';
+    riskLevel = 'low';
+    verifyCommand = 'node bin/multimodel-dev-os.js memory refresh';
+    rollbackPlan = 'git checkout -- .ai/intelligence/';
+  }
+
+  let md = `---
+id: ${id}
+created_at: ${now.toISOString()}
+title: ${title}
+problem: ${problem}
+evidence: ${evidence}
+risk_level: ${riskLevel}
+affected_files:
+`;
+  affectedFiles.forEach(f => {
+    md += `  - ${f}\n`;
+  });
+  md += `suggested_change: ${suggestedChange}
+verify_command: ${verifyCommand}
+rollback_plan: ${rollbackPlan}
+approval_status: pending
+---
+
+# Codebase Improvement Proposal: ${title}
+
+> [!WARNING]
+> Manual approval is required before implementing this proposal. Edit the frontmatter metadata block to change \`approval_status\` to \`approved\` to authorize modifications.
+
+## 1. Problem Description
+${problem}
+
+## 2. Evidence
+${evidence}
+
+## 3. Suggested Modifications
+${suggestedChange}
+
+## 4. Safety & Rollback Parameters
+*   **Risk Level**: ${riskLevel.toUpperCase()}
+*   **Verification Command**: \`${verifyCommand}\`
+*   **Rollback Command**: \`${rollbackPlan}\`
+*   **Approval Status**: PENDING (Manual approval required before implementation)
+`;
+
+  const proposalFile = join(proposalsDir, `${id}.md`);
+  if (options.dryRun) {
+    console.log(`\x1b[36m[DRY-RUN] WOULD WRITE PROPOSAL TO ${proposalFile}:\x1b[0m`);
+    console.log(md);
+  } else {
+    writeFileSync(proposalFile, md, 'utf8');
+    console.log(`✔ Created codebase improvement proposal: .ai/proposals/${id}.md`);
+  }
+}
+
+function handleImproveReview(options) {
+  const proposalsDir = join(options.target, '.ai', 'proposals');
+  if (!existsSync(proposalsDir)) {
+    console.log('No improvement proposals found.');
+    return;
+  }
+
+  try {
+    const files = readdirSync(proposalsDir).filter(f => f.startsWith('proposal-') && f.endsWith('.md'));
+    if (files.length === 0) {
+      console.log('No improvement proposals found.');
+      return;
+    }
+
+    console.log(`\n📋 \x1b[36mCodebase Improvement Proposals\x1b[0m`);
+    console.log('==================================================');
+    
+    files.forEach(file => {
+      const fullPath = join(proposalsDir, file);
+      const content = readFileSync(fullPath, 'utf8');
+      
+      const fmMatch = content.match(/^---([\s\S]*?)---/);
+      if (!fmMatch) return;
+      
+      const fmContent = fmMatch[1];
+      const metadata = parseYaml(fmContent) || {};
+      
+      const statusColor = metadata.approval_status === 'approved' ? '\x1b[32m' : metadata.approval_status === 'rejected' ? '\x1b[31m' : '\x1b[33m';
+      console.log(`\n\x1b[34m* [${metadata.id || file.replace('.md', '')}] ${metadata.title || 'Untitled'}\x1b[0m`);
+      console.log(`  \x1b[37mRisk Level:\x1b[0m ${metadata.risk_level || 'unknown'}`);
+      console.log(`  \x1b[37mStatus:\x1b[0m ${statusColor}${metadata.approval_status || 'pending'}\x1b[0m`);
+      console.log(`  \x1b[37mProblem:\x1b[0m ${metadata.problem || 'N/A'}`);
+      if (metadata.affected_files && metadata.affected_files.length > 0) {
+        console.log(`  \x1b[37mAffected Files:\x1b[0m ${metadata.affected_files.join(', ')}`);
+      }
+    });
+    console.log();
+  } catch (e) {
+    console.error(`\x1b[31mError: Failed to review proposals: ${e.message}\x1b[0m`);
+    process.exit(1);
+  }
+}
+
+function handleImproveStatus(options) {
+  const proposalsDir = join(options.target, '.ai', 'proposals');
+  if (!existsSync(proposalsDir)) {
+    console.log('Improvement Proposal Engine Status:');
+    console.log('  Total Proposals:  0');
+    console.log('  Pending Approval: 0');
+    return;
+  }
+
+  try {
+    const files = readdirSync(proposalsDir).filter(f => f.startsWith('proposal-') && f.endsWith('.md'));
+    let pending = 0;
+    let approved = 0;
+    let rejected = 0;
+
+    files.forEach(file => {
+      const content = readFileSync(join(proposalsDir, file), 'utf8');
+      const fmMatch = content.match(/^---([\s\S]*?)---/);
+      if (fmMatch) {
+        const metadata = parseYaml(fmMatch[1]) || {};
+        const status = metadata.approval_status || 'pending';
+        if (status === 'approved') approved++;
+        else if (status === 'rejected') rejected++;
+        else pending++;
+      }
+    });
+
+    console.log(`\n⚙ \x1b[36mImprovement Proposals Engine Status\x1b[0m`);
+    console.log('==================================================');
+    console.log(`  Total Proposals:  ${files.length}`);
+    console.log(`  Pending Approval: \x1b[33m${pending}\x1b[0m`);
+    console.log(`  Approved:         \x1b[32m${approved}\x1b[0m`);
+    console.log(`  Rejected:         \x1b[31m${rejected}\x1b[0m`);
+    console.log();
+  } catch (e) {
+    console.error(`\x1b[31mError: Failed to fetch status: ${e.message}\x1b[0m`);
+    process.exit(1);
+  }
+}
+
+function getSha256(content) {
+  return createHash('sha256').update(content, 'utf8').digest('hex');
+}
+
+function validatePath(targetRoot, relPath) {
+  const normalizedRel = relPath.replace(/\\/g, '/');
+  
+  if (normalizedRel.startsWith('/') || normalizedRel.includes('..')) {
+    return { valid: false, reason: `Path '${relPath}' contains directory traversal or is absolute.`, type: 'outside' };
+  }
+
+  const resolved = resolve(targetRoot, relPath);
+  const relativeFromRoot = relative(targetRoot, resolved);
+  
+  if (relativeFromRoot.startsWith('..') || isAbsolute(relativeFromRoot) || resolved === targetRoot) {
+    return { valid: false, reason: `Path '${relPath}' resolves outside the target root.`, type: 'outside' };
+  }
+
+  const parts = relativeFromRoot.replace(/\\/g, '/').split('/');
+  
+  const protectedFolders = [
+    '.git',
+    'node_modules',
+    'dist',
+    'build',
+    '.next',
+    'coverage'
+  ];
+  for (const part of parts) {
+    if (protectedFolders.includes(part)) {
+      return { valid: false, reason: `Path '${relPath}' attempts to access protected directory '${part}/'.`, type: 'protected' };
+    }
+  }
+
+  const cleanRelativeFromRoot = relativeFromRoot.replace(/\\/g, '/');
+  if (cleanRelativeFromRoot.startsWith('docs/.vitepress/dist') || cleanRelativeFromRoot.startsWith('docs/.vitepress/cache')) {
+    return { valid: false, reason: `Path '${relPath}' attempts to access protected vitepress path.`, type: 'protected' };
+  }
+
+  const filename = parts[parts.length - 1];
+  if (filename === '.env' || filename.startsWith('.env.') || filename === '.npmrc' || filename === 'credentials.json' || filename === 'package-lock.json' || filename === 'apply-log.jsonl') {
+    return { valid: false, reason: `Path '${relPath}' targets a protected config/secret file.`, type: 'protected' };
+  }
+  if (filename.endsWith('.pem') || filename.endsWith('.key') || filename.endsWith('.jks') || filename.endsWith('.keystore')) {
+    return { valid: false, reason: `Path '${relPath}' targets a protected key/certificate file.`, type: 'protected' };
+  }
+
+  return { valid: true, resolved };
+}
+
+function validateProposal(proposalFile, targetRoot) {
+  const gates = {
+    frontmatter: { status: 'skip' },
+    approval: { status: 'skip' },
+    json: { status: 'skip' },
+    types: { status: 'skip' },
+    boundaries: { status: 'skip' },
+    permissions: { status: 'skip' },
+    constraints: { status: 'skip' }
+  };
+
+  if (!existsSync(proposalFile)) {
+    gates.frontmatter = { status: 'fail', reason: 'missing frontmatter' };
+    return { valid: false, reason: 'missing frontmatter', gates };
+  }
+
+  const content = readFileSync(proposalFile, 'utf8');
+  const fmMatch = content.match(/^---([\s\S]*?)---/);
+  if (!fmMatch) {
+    gates.frontmatter = { status: 'fail', reason: 'missing frontmatter' };
+    return { valid: false, reason: 'missing frontmatter', gates };
+  }
+  const fmContent = fmMatch[1];
+  const metadata = parseYaml(fmContent);
+  if (!metadata || typeof metadata !== 'object') {
+    gates.frontmatter = { status: 'fail', reason: 'missing frontmatter' };
+    return { valid: false, reason: 'missing frontmatter', gates };
+  }
+
+  gates.frontmatter = { status: 'pass' };
+  const proposalId = metadata.id || basename(proposalFile, '.md');
+  const proposalTitle = metadata.title || 'Untitled Proposal';
+  const proposalStatus = metadata.approval_status || 'pending';
+
+  const isApproved = (metadata.approval_status === 'approved');
+  gates.approval = isApproved ? { status: 'pass' } : { status: 'fail', reason: 'approval_status not approved' };
+
+  const body = content.substring(fmMatch[0].length);
+  const jsonBlockRegex = /```json\s*\n([\s\S]*?)\n\s*```/;
+  const jsonMatch = body.match(jsonBlockRegex);
+  
+  let operationsData = null;
+  if (!jsonMatch) {
+    gates.json = { status: 'fail', reason: 'no operations block' };
+  } else {
+    try {
+      operationsData = JSON.parse(jsonMatch[1]);
+      if (!operationsData || !Array.isArray(operationsData.operations) || operationsData.operations.length === 0) {
+        gates.json = { status: 'fail', reason: 'no operations block' };
+      } else {
+        gates.json = { status: 'pass' };
+      }
+    } catch (e) {
+      gates.json = { status: 'fail', reason: 'invalid JSON operations block' };
+    }
+  }
+
+  if (gates.json.status !== 'pass') {
+    const gateOrder = ['frontmatter', 'approval', 'json', 'types', 'boundaries', 'permissions', 'constraints'];
+    let firstFailReason = null;
+    for (const g of gateOrder) {
+      if (gates[g].status === 'fail') {
+        firstFailReason = gates[g].reason;
+        break;
+      }
+    }
+    return {
+      valid: false,
+      reason: firstFailReason,
+      gates,
+      proposalId,
+      proposalTitle,
+      proposalStatus,
+      operations: []
+    };
+  }
+
+  let typesStatus = 'pass';
+  let typesReason = '';
+  let boundariesStatus = 'pass';
+  let boundariesReason = '';
+  let permissionsStatus = 'pass';
+  let permissionsReason = '';
+  let constraintsStatus = 'pass';
+  let constraintsReason = '';
+
+  const validatedOperations = [];
+  const operations = operationsData.operations;
+
+  for (let idx = 0; idx < operations.length; idx++) {
+    const op = operations[idx];
+    if (!op || typeof op !== 'object' || !op.type) {
+      if (typesStatus === 'pass') {
+        typesStatus = 'fail';
+        typesReason = `unsupported operation type`;
+      }
+      continue;
+    }
+    
+    const allowedTypes = ['create_file', 'append_line', 'replace_text'];
+    if (!allowedTypes.includes(op.type)) {
+      if (typesStatus === 'pass') {
+        typesStatus = 'fail';
+        typesReason = `unsupported operation type`;
+      }
+      continue;
+    }
+    
+    if (typeof op.path !== 'string' || !op.path.trim()) {
+      if (boundariesStatus === 'pass') {
+        boundariesStatus = 'fail';
+        boundariesReason = `path outside target`;
+      }
+      continue;
+    }
+    
+    const pathVal = validatePath(targetRoot, op.path);
+    if (!pathVal.valid) {
+      if (pathVal.type === 'outside') {
+        if (boundariesStatus === 'pass') {
+          boundariesStatus = 'fail';
+          boundariesReason = `path outside target`;
+        }
+      } else if (pathVal.type === 'protected') {
+        if (permissionsStatus === 'pass') {
+          permissionsStatus = 'fail';
+          permissionsReason = `protected path`;
+        }
+      }
+      continue;
+    }
+    const resolvedPath = pathVal.resolved;
+    
+    if (op.type === 'create_file') {
+      if (typeof op.content !== 'string') {
+        if (constraintsStatus === 'pass') {
+          constraintsStatus = 'fail';
+          constraintsReason = `unsupported operation type`; // Treated as malformed/unsupported or type logic error
+        }
+      } else if (existsSync(resolvedPath) && !op.overwrite) {
+        if (constraintsStatus === 'pass') {
+          constraintsStatus = 'fail';
+          constraintsReason = `create_file target exists without overwrite`;
+        }
+      }
+    } else if (op.type === 'append_line') {
+      if (typeof op.line !== 'string') {
+        if (constraintsStatus === 'pass') {
+          constraintsStatus = 'fail';
+          constraintsReason = `unsupported operation type`;
+        }
+      }
+    } else if (op.type === 'replace_text') {
+      if (typeof op.find !== 'string' || typeof op.replace !== 'string') {
+        if (constraintsStatus === 'pass') {
+          constraintsStatus = 'fail';
+          constraintsReason = `unsupported operation type`;
+        }
+      } else if (!existsSync(resolvedPath)) {
+        if (constraintsStatus === 'pass') {
+          constraintsStatus = 'fail';
+          constraintsReason = `replace_text zero matches`; // file does not exist, so zero matches
+        }
+      } else {
+        const fileContent = readFileSync(resolvedPath, 'utf8');
+        let count = 0;
+        let pos = fileContent.indexOf(op.find);
+        while (pos !== -1) {
+          count++;
+          pos = fileContent.indexOf(op.find, pos + op.find.length);
+        }
+        
+        if (count === 0) {
+          if (constraintsStatus === 'pass') {
+            constraintsStatus = 'fail';
+            constraintsReason = `replace_text zero matches`;
+          }
+        } else if (count > 1 && !op.allow_multiple) {
+          if (constraintsStatus === 'pass') {
+            constraintsStatus = 'fail';
+            constraintsReason = `replace_text multiple matches without allow_multiple`;
+          }
+        }
+      }
+    }
+    
+    validatedOperations.push({
+      ...op,
+      resolvedPath
+    });
+  }
+
+  gates.types = { status: typesStatus, reason: typesReason };
+  gates.boundaries = { status: boundariesStatus, reason: boundariesReason };
+  gates.permissions = { status: permissionsStatus, reason: permissionsReason };
+  gates.constraints = { status: constraintsStatus, reason: constraintsReason };
+
+  const gateOrder = ['frontmatter', 'approval', 'json', 'types', 'boundaries', 'permissions', 'constraints'];
+  let firstFailReason = null;
+  for (const g of gateOrder) {
+    if (gates[g].status === 'fail') {
+      firstFailReason = gates[g].reason;
+      break;
+    }
+  }
+
+  const valid = (firstFailReason === null);
+  return {
+    valid,
+    reason: firstFailReason,
+    gates,
+    proposalId,
+    proposalTitle,
+    proposalStatus,
+    operations: valid ? validatedOperations : []
+  };
+}
+
+function handleImproveValidate(proposalFile, options) {
+  console.log(`🛡  \x1b[34mValidating improvement proposal: ${proposalFile}\x1b[0m\n`);
+  const validation = validateProposal(proposalFile, options.target);
+  
+  if (validation.proposalId) {
+    console.log(`Proposal ID: \x1b[33m${validation.proposalId}\x1b[0m`);
+    console.log(`Title:       \x1b[37m${validation.proposalTitle}\x1b[0m`);
+    console.log(`Status:      ${validation.proposalStatus === 'approved' ? '\x1b[32m' : '\x1b[31m'}${validation.proposalStatus}\x1b[0m\n`);
+  }
+
+  console.log(`Safety Gate Checklist:`);
+  
+  const gateLabels = {
+    frontmatter: 'Frontmatter Metadata',
+    approval: 'Approval Status',
+    json: 'Operations JSON Block',
+    types: 'Operation Type Safety',
+    boundaries: 'Path Boundaries (Within Target Root)',
+    permissions: 'Path Permissions (No Protected Paths)',
+    constraints: 'Operation Constraints (Overwrites & Replacements)'
+  };
+
+  const gateOrder = ['frontmatter', 'approval', 'json', 'types', 'boundaries', 'permissions', 'constraints'];
+
+  gateOrder.forEach(g => {
+    const gate = validation.gates[g];
+    const label = gateLabels[g];
+    if (gate.status === 'pass') {
+      console.log(`  \x1b[32m[✓]\x1b[0m ${label}`);
+    } else if (gate.status === 'fail') {
+      console.log(`  \x1b[31m[✗]\x1b[0m ${label} - \x1b[31m${gate.reason}\x1b[0m`);
+    } else {
+      console.log(`  \x1b[37m[-]\x1b[0m ${label}`);
+    }
+  });
+  console.log();
+
+  if (!validation.valid) {
+    console.error(`\x1b[31mValidation FAILED: ${validation.reason}\x1b[0m`);
+    console.error(`\x1b[33mActionable Fix:\x1b[0m`);
+    if (validation.reason === 'missing frontmatter') {
+      console.error(`  Please verify that the proposal file contains a valid YAML frontmatter block at the very top delimited by '---'.`);
+    } else if (validation.reason === 'approval_status not approved') {
+      console.error(`  The proposal approval status is not set to 'approved'. Edit the frontmatter block and set 'approval_status: approved'.`);
+    } else if (validation.reason === 'no operations block') {
+      console.error(`  No valid operations JSON block was found. Ensure a \`\`\`json block exists containing an "operations" array.`);
+    } else if (validation.reason === 'invalid JSON operations block') {
+      console.error(`  The operations block inside \`\`\`json is not valid JSON. Run it through a JSON validator to fix syntax errors.`);
+    } else if (validation.reason === 'unsupported operation type') {
+      console.error(`  An operation type is disallowed. Allowed types are: 'create_file', 'append_line', 'replace_text'.`);
+    } else if (validation.reason === 'protected path') {
+      console.error(`  An operation targets a protected directory (like .git, node_modules) or configuration file (like .env, .npmrc, apply-log.jsonl).`);
+    } else if (validation.reason === 'path outside target') {
+      console.error(`  An operation path tries to escape the target directory using directory traversal (..) or absolute paths.`);
+    } else if (validation.reason === 'replace_text zero matches') {
+      console.error(`  The 'find' text specified in a replace_text operation was not found in the target file.`);
+    } else if (validation.reason === 'replace_text multiple matches without allow_multiple') {
+      console.error(`  The 'find' text matched multiple times. Set 'allow_multiple: true' if you want to replace all occurrences.`);
+    } else if (validation.reason === 'create_file target exists without overwrite') {
+      console.error(`  The target file already exists. Set 'overwrite: true' in the operation to allow overwriting.`);
+    } else {
+      console.error(`  Check the proposal constraints and make sure all target files and fields are correct.`);
+    }
+    console.error();
+    process.exit(1);
+  }
+
+  console.log(`\x1b[32m✔ Proposal is VALID and ready to be applied. ${validation.operations.length} operations parsed successfully.\x1b[0m\n`);
+  process.exit(0);
+}
+
+function handleImproveDiff(proposalFile, options) {
+  console.log(`🔍 \x1b[36mGenerating diff for proposal: ${proposalFile}\x1b[0m\n`);
+  const validation = validateProposal(proposalFile, options.target);
+  if (!validation.valid) {
+    console.error(`\x1b[31mValidation FAILED: ${validation.reason}\x1b[0m`);
+    process.exit(1);
+  }
+  
+  const operations = validation.operations;
+  
+  let createCount = 0;
+  let appendCount = 0;
+  let replaceCount = 0;
+  const affectedFilesSet = new Set();
+  
+  operations.forEach(op => {
+    affectedFilesSet.add(op.path);
+    if (op.type === 'create_file') createCount++;
+    else if (op.type === 'append_line') appendCount++;
+    else if (op.type === 'replace_text') replaceCount++;
+  });
+  
+  console.log(`Summary of Planned Changes:`);
+  console.log(`---------------------------`);
+  console.log(`Total Operations: \x1b[33m${operations.length}\x1b[0m`);
+  console.log(`Operations Count: \x1b[32m${createCount} Create\x1b[0m, \x1b[33m${appendCount} Append\x1b[0m, \x1b[35m${replaceCount} Replace\x1b[0m`);
+  console.log(`Affected Files (${affectedFilesSet.size}):`);
+  affectedFilesSet.forEach(f => console.log(`  - ${f}`));
+  console.log();
+
+  const printTruncatedLines = (content, prefix, colorCode) => {
+    const lines = content.split(/\r?\n/);
+    const maxLines = 5;
+    for (let i = 0; i < Math.min(lines.length, maxLines); i++) {
+      console.log(`${colorCode}${prefix} ${lines[i]}\x1b[0m`);
+    }
+    if (lines.length > maxLines) {
+      console.log(`${colorCode}${prefix} ... (${lines.length - maxLines} more lines)\x1b[0m`);
+    }
+  };
+
+  const types = ['create_file', 'append_line', 'replace_text'];
+  const typeHeaders = {
+    create_file: '--- CREATE_FILE OPERATIONS ---',
+    append_line: '--- APPEND_LINE OPERATIONS ---',
+    replace_text: '--- REPLACE_TEXT OPERATIONS ---'
+  };
+
+  types.forEach(type => {
+    const typeOps = operations.filter(op => op.type === type);
+    if (typeOps.length === 0) return;
+
+    console.log(`\x1b[36m\x1b[1m${typeHeaders[type]}\x1b[0m`);
+    typeOps.forEach(op => {
+      const idx = operations.indexOf(op);
+      console.log(`\n\x1b[33m[Operation #${idx + 1}] Target: ${op.path}\x1b[0m`);
+
+      if (type === 'create_file') {
+        const exists = existsSync(op.resolvedPath);
+        if (exists) {
+          console.log(`  \x1b[31m⚠️  [Overwriting existing file]\x1b[0m`);
+        } else {
+          console.log(`  \x1b[32m+ [Creating new file]\x1b[0m`);
+        }
+        const linesCount = op.content.split(/\r?\n/).length;
+        console.log(`  + [File content: ${linesCount} line(s), overwrite: ${!!op.overwrite}]`);
+        printTruncatedLines(op.content, '  +', '\x1b[32m');
+      } else if (type === 'append_line') {
+        const exists = existsSync(op.resolvedPath);
+        let currentFileContent = '';
+        if (exists) {
+          currentFileContent = readFileSync(op.resolvedPath, 'utf8');
+        }
+        const fileLines = currentFileContent.split(/\r?\n/);
+        const lineExists = fileLines.some(l => l.trim() === op.line.trim());
+        if (lineExists) {
+          console.log(`  \x1b[33m[IDEMPOTENT] Line already exists in file. No changes will be made.\x1b[0m`);
+        } else {
+          console.log(`  \x1b[32m+ Appending line:\x1b[0m`);
+          console.log(`  \x1b[32m+ ${op.line}\x1b[0m`);
+        }
+      } else if (type === 'replace_text') {
+        console.log(`  --- a/${op.path}`);
+        console.log(`  +++ b/${op.path}`);
+        console.log(`  \x1b[31m- Removing:\x1b[0m`);
+        printTruncatedLines(op.find, '  -', '\x1b[31m');
+        console.log(`  \x1b[32m+ Inserting:\x1b[0m`);
+        printTruncatedLines(op.replace, '  +', '\x1b[32m');
+      }
+    });
+    console.log();
+  });
+}
+
+function handleImproveApply(proposalFile, options) {
+  if (!options.approved) {
+    console.error(`\x1b[31mError: Proposal cannot be applied without explicit user approval. Pass the --approved flag.\x1b[0m`);
+    console.error(`Example: node bin/multimodel-dev-os.js improve apply ${proposalFile} --approved`);
+    process.exit(1);
+  }
+
+  console.log(`🚀 \x1b[34mApplying proposal: ${proposalFile}\x1b[0m`);
+  const validation = validateProposal(proposalFile, options.target);
+  if (!validation.valid) {
+    console.error(`\x1b[31mValidation FAILED: ${validation.reason}\x1b[0m`);
+    
+    // Log the refusal
+    const applyId = `apply-${new Date().toISOString().replace(/[-:T.Z]/g, '').slice(0, 14)}`;
+    const logDir = join(options.target, '.ai', 'proposals');
+    if (!existsSync(logDir)) {
+      try { mkdirSync(logDir, { recursive: true }); } catch (e) {}
+    }
+    const logFile = join(logDir, 'apply-log.jsonl');
+    const record = {
+      id: applyId,
+      proposal_id: validation.proposalId || basename(proposalFile, '.md'),
+      applied_at: new Date().toISOString(),
+      target: options.target,
+      operations_count: 0,
+      files_changed: [],
+      before_hashes: {},
+      after_hashes: {},
+      status: 'refused',
+      refused_reason: validation.reason,
+      notes: `Validation failed: ${validation.reason}`
+    };
+    try {
+      writeFileSync(logFile, JSON.stringify(record) + '\n', { flag: 'a', encoding: 'utf8' });
+    } catch (err) {}
+    process.exit(1);
+  }
+
+  const operations = validation.operations;
+  const proposalId = validation.proposalId;
+
+  // Print compact operations summary
+  const createCount = operations.filter(op => op.type === 'create_file').length;
+  const appendCount = operations.filter(op => op.type === 'append_line').length;
+  const replaceCount = operations.filter(op => op.type === 'replace_text').length;
+  console.log(`Summary of Operations:`);
+  console.log(`  - ${createCount} file(s) to create`);
+  console.log(`  - ${appendCount} file(s) to append`);
+  console.log(`  - ${replaceCount} file(s) to modify (replace)`);
+  console.log(`\nApplying changes...`);
+
+  const filesChanged = [];
+  const beforeHashes = {};
+  const afterHashes = {};
+  let status = 'success';
+  let notes = '';
+
+  const applyId = `apply-${new Date().toISOString().replace(/[-:T.Z]/g, '').slice(0, 14)}`;
+
+  try {
+    operations.forEach(op => {
+      const relPath = relative(options.target, op.resolvedPath).replace(/\\/g, '/');
+      if (!filesChanged.includes(relPath)) {
+        filesChanged.push(relPath);
+      }
+      if (existsSync(op.resolvedPath)) {
+        const fileContent = readFileSync(op.resolvedPath, 'utf8');
+        beforeHashes[relPath] = getSha256(fileContent);
+      } else {
+        beforeHashes[relPath] = null;
+      }
+    });
+
+    operations.forEach((op, idx) => {
+      const relPath = relative(options.target, op.resolvedPath).replace(/\\/g, '/');
+      console.log(`  Executing Operation #${idx + 1} (${op.type}) on '${relPath}'...`);
+
+      if (op.type === 'create_file') {
+        const dir = dirname(op.resolvedPath);
+        if (!existsSync(dir)) {
+          mkdirSync(dir, { recursive: true });
+        }
+        const exists = existsSync(op.resolvedPath);
+        writeFileSync(op.resolvedPath, op.content, 'utf8');
+        if (exists) {
+          console.log(`    [OVERWRITTEN] Overwrote existing file '${relPath}'.`);
+        } else {
+          console.log(`    [CREATED] Created new file '${relPath}'.`);
+        }
+      } else if (op.type === 'append_line') {
+        let content = '';
+        if (existsSync(op.resolvedPath)) {
+          content = readFileSync(op.resolvedPath, 'utf8');
+        }
+        const fileLines = content.split(/\r?\n/);
+        const lineExists = fileLines.some(l => l.trim() === op.line.trim());
+        if (!lineExists) {
+          let newContent = content;
+          if (content.length > 0 && !content.endsWith('\n') && !content.endsWith('\r')) {
+            newContent += '\n';
+          }
+          newContent += op.line + '\n';
+          const dir = dirname(op.resolvedPath);
+          if (!existsSync(dir)) {
+            mkdirSync(dir, { recursive: true });
+          }
+          writeFileSync(op.resolvedPath, newContent, 'utf8');
+          console.log(`    [APPENDED] Appended 1 line to '${relPath}'.`);
+        } else {
+          console.log(`    [IDEMPOTENT] Line already exists in '${relPath}'. Skipping append.`);
+        }
+      } else if (op.type === 'replace_text') {
+        const fileContent = readFileSync(op.resolvedPath, 'utf8');
+        let count = 0;
+        let pos = fileContent.indexOf(op.find);
+        while (pos !== -1) {
+          count++;
+          pos = fileContent.indexOf(op.find, pos + op.find.length);
+        }
+
+        let newContent;
+        if (op.allow_multiple) {
+          newContent = fileContent.split(op.find).join(op.replace);
+        } else {
+          newContent = fileContent.replace(op.find, op.replace);
+          if (count > 0) count = 1;
+        }
+        writeFileSync(op.resolvedPath, newContent, 'utf8');
+        console.log(`    [REPLACED] Replaced ${count} occurrence(s) of find text in '${relPath}'.`);
+      }
+    });
+
+    filesChanged.forEach(relPath => {
+      const fullPath = resolve(options.target, relPath);
+      if (existsSync(fullPath)) {
+        const fileContent = readFileSync(fullPath, 'utf8');
+        afterHashes[relPath] = getSha256(fileContent);
+      } else {
+        afterHashes[relPath] = null;
+      }
+    });
+
+    notes = `Successfully applied ${operations.length} operations.`;
+  } catch (e) {
+    status = 'failed';
+    notes = `Execution error: ${e.message}`;
+    console.error(`\x1b[31mError applying proposal: ${e.message}\x1b[0m`);
+  }
+
+  const logDir = join(options.target, '.ai', 'proposals');
+  if (!existsSync(logDir)) {
+    mkdirSync(logDir, { recursive: true });
+  }
+  const logFile = join(logDir, 'apply-log.jsonl');
+  
+  const record = {
+    id: applyId,
+    proposal_id: proposalId,
+    applied_at: new Date().toISOString(),
+    target: options.target,
+    operations_count: operations.length,
+    files_changed: filesChanged,
+    before_hashes: beforeHashes,
+    after_hashes: afterHashes,
+    status,
+    refused_reason: status === 'failed' ? notes : undefined,
+    notes
+  };
+
+  try {
+    writeFileSync(logFile, JSON.stringify(record) + '\n', { flag: 'a', encoding: 'utf8' });
+  } catch (err) {
+    console.error(`\x1b[31mFailed to write to audit log: ${err.message}\x1b[0m`);
+  }
+
+  if (status === 'success') {
+    console.log(`\n\x1b[32m✔ Proposal applied successfully!\x1b[0m`);
+    console.log(`Files changed:`);
+    filesChanged.forEach(f => console.log(`  - ${f}`));
+    console.log(`Audit log recorded to: ${logFile}`);
+  } else {
+    process.exit(1);
+  }
+}
+
+function handleImproveLog(options) {
+  const logFile = join(options.target, '.ai', 'proposals', 'apply-log.jsonl');
+  if (!existsSync(logFile)) {
+    console.log('No apply log found.');
+    return;
+  }
+
+  try {
+    const lines = readFileSync(logFile, 'utf8').trim().split(/\r?\n/);
+    console.log(`\n📜 \x1b[36mApplied Proposals Audit Log\x1b[0m`);
+    console.log('==================================================');
+    lines.forEach(line => {
+      if (!line.trim()) return;
+      const record = JSON.parse(line);
+      const statusColor = record.status === 'success' ? '\x1b[32m' : '\x1b[31m';
+      console.log(`\n\x1b[34m* [${record.id}] Proposal: ${record.proposal_id}\x1b[0m`);
+      console.log(`  \x1b[37mApplied At:\x1b[0m ${record.applied_at}`);
+      console.log(`  \x1b[37mOperations:\x1b[0m ${record.operations_count}`);
+      console.log(`  \x1b[37mFiles Changed:\x1b[0m ${record.files_changed.join(', ')}`);
+      console.log(`  \x1b[37mStatus:\x1b[0m ${statusColor}${record.status}\x1b[0m`);
+      console.log(`  \x1b[37mNotes:\x1b[0m ${record.notes}`);
+    });
+    console.log();
+  } catch (e) {
+    console.error(`\x1b[31mError reading audit log: ${e.message}\x1b[0m`);
+    process.exit(1);
+  }
+}
+
+// ==================================================
+// v2.5.0 Repository Intelligence Command Center
+// ==================================================
+
+function handleStatus(options) {
+  console.log(`\n📊 \x1b[36mRepository Intelligence Status: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+
+  // 1. Project Info
+  let pkgName = 'unknown';
+  let pkgVersion = 'unknown';
+  try {
+    const pkgPath = join(options.target, 'package.json');
+    if (existsSync(pkgPath)) {
+      const pkg = JSON.parse(readFileSync(pkgPath, 'utf8'));
+      pkgName = pkg.name || pkgName;
+      pkgVersion = pkg.version || pkgVersion;
+    }
+  } catch (e) {}
+  console.log(`  \x1b[33mProject Info:\x1b[0m`);
+  console.log(`    Package Name:    ${pkgName}`);
+  console.log(`    Package Version: ${pkgVersion}`);
+
+  // 2. Framework signals
+  const { files } = scanTarget(options.target);
+  const frameworkSignals = detectFrameworkSignals(files, options.target);
+  const dependencySignals = detectDependencySignals(files, options.target);
+  console.log(`  \x1b[33mFramework & Dependency Signals:\x1b[0m`);
+  console.log(`    Frameworks:      ${frameworkSignals.join(', ') || 'None'}`);
+  console.log(`    Dependencies:    ${dependencySignals.join(', ') || 'None'}`);
+
+  // 3. Memory status
+  const memoryHashPath = join(options.target, '.ai', 'intelligence', 'memory.hash.json');
+  let memoryStatus = '\x1b[31mMISSING\x1b[0m';
+  let lastBuildTime = 'N/A';
+  if (existsSync(memoryHashPath)) {
+    try {
+      const memObj = JSON.parse(readFileSync(memoryHashPath, 'utf8'));
+      lastBuildTime = memObj.generated_at || 'N/A';
+      const diff = diffMemory(options.target);
+      if (diff) {
+        if (diff.added.length === 0 && diff.removed.length === 0 && diff.changed.length === 0) {
+          memoryStatus = '\x1b[32mCURRENT\x1b[0m';
+        } else {
+          memoryStatus = `\x1b[33mSTALE\x1b[0m (changes: +${diff.added.length}, -${diff.removed.length}, ~${diff.changed.length})`;
+        }
+      }
+    } catch (e) {
+      memoryStatus = '\x1b[31mCORRUPT\x1b[0m';
+    }
+  }
+  console.log(`  \x1b[33mMemory State:\x1b[0m`);
+  console.log(`    Status:          ${memoryStatus}`);
+  console.log(`    Last Built:      ${lastBuildTime}`);
+
+  // 4. Feedback & Rules
+  const feedbackPath = join(options.target, '.ai', 'intelligence', 'feedback-log.jsonl');
+  let feedbackCount = 0;
+  if (existsSync(feedbackPath)) {
+    try {
+      feedbackCount = readFileSync(feedbackPath, 'utf8').trim().split(/\r?\n/).filter(l => l.trim() !== '').length;
+    } catch (e) {}
+  }
+  const rulesPath = join(options.target, '.ai', 'intelligence', 'learning-rules.md');
+  const rulesStatus = existsSync(rulesPath) ? '\x1b[32mPRESENT\x1b[0m' : '\x1b[31mMISSING\x1b[0m';
+  console.log(`  \x1b[33mFeedback Loop & Rules:\x1b[0m`);
+  console.log(`    Feedback Count:  ${feedbackCount}`);
+  console.log(`    Learning Rules:  ${rulesStatus}`);
+
+  // 5. Proposals Engine
+  const proposalsDir = join(options.target, '.ai', 'proposals');
+  let pendingCount = 0;
+  let approvedCount = 0;
+  let rejectedCount = 0;
+  let totalProposals = 0;
+  if (existsSync(proposalsDir)) {
+    try {
+      const propFiles = readdirSync(proposalsDir).filter(f => f.startsWith('proposal-') && f.endsWith('.md'));
+      totalProposals = propFiles.length;
+      propFiles.forEach(file => {
+        const content = readFileSync(join(proposalsDir, file), 'utf8');
+        const fmMatch = content.match(/^---([\s\S]*?)---/);
+        if (fmMatch) {
+          const metadata = parseYaml(fmMatch[1]) || {};
+          const status = metadata.approval_status || 'pending';
+          if (status === 'approved') approvedCount++;
+          else if (status === 'rejected') rejectedCount++;
+          else pendingCount++;
+        }
+      });
+    } catch (e) {}
+  }
+  console.log(`  \x1b[33mImprovement Proposals:\x1b[0m`);
+  console.log(`    Total proposals: ${totalProposals}`);
+  console.log(`    Pending:         \x1b[33m${pendingCount}\x1b[0m`);
+  console.log(`    Approved:        \x1b[32m${approvedCount}\x1b[0m`);
+  console.log(`    Rejected:        \x1b[31m${rejectedCount}\x1b[0m`);
+
+  // 6. Apply Log History
+  const applyLogPath = join(options.target, '.ai', 'proposals', 'apply-log.jsonl');
+  let applyLogCount = 0;
+  if (existsSync(applyLogPath)) {
+    try {
+      applyLogCount = readFileSync(applyLogPath, 'utf8').trim().split(/\r?\n/).filter(l => l.trim() !== '').length;
+    } catch (e) {}
+  }
+  console.log(`  \x1b[33mApply Audit Log:\x1b[0m`);
+  console.log(`    Apply Count:     ${applyLogCount}`);
+
+  // 7. Recommended Next Move
+  let nextMove = 'mmdo status';
+  if (!existsSync(join(options.target, '.ai', 'config.yaml'))) {
+    nextMove = '\x1b[36mnpx multimodel-dev-os init\x1b[0m (initialize MultiModel Dev OS first)';
+  } else if (!existsSync(memoryHashPath)) {
+    nextMove = '\x1b[36mnpx multimodel-dev-os memory build\x1b[0m (initialize memory index)';
+  } else {
+    const diff = diffMemory(options.target);
+    if (diff && (diff.added.length > 0 || diff.removed.length > 0 || diff.changed.length > 0)) {
+      nextMove = '\x1b[36mnpx multimodel-dev-os memory refresh\x1b[0m (update memory with changes)';
+    } else if (feedbackCount > 0 && !existsSync(rulesPath)) {
+      nextMove = '\x1b[36mnpx multimodel-dev-os feedback summarize\x1b[0m (compile feedback into learning rules)';
+    } else if (pendingCount > 0) {
+      nextMove = '\x1b[36mnpx multimodel-dev-os improve review\x1b[0m (review pending proposals)';
+    } else {
+      nextMove = '\x1b[36mnpx multimodel-dev-os workflow run repo-health\x1b[0m (run standard codebase health checks)';
+    }
+  }
+  console.log(`\n  \x1b[35mRecommended Next Command:\x1b[0m`);
+  console.log(`    ${nextMove}\n`);
+}
+
+function getWorkflowsPath(target) {
+  let workflowsPath = join(target, '.ai', 'registries', 'workflows.yaml');
+  let usingFallback = false;
+  if (!existsSync(workflowsPath)) {
+    const fallbackPath = join(sourceRoot, '.ai', 'registries', 'workflows.yaml');
+    if (existsSync(fallbackPath)) {
+      workflowsPath = fallbackPath;
+      usingFallback = true;
+    }
+  }
+  return { workflowsPath, usingFallback };
+}
+
+function handleWorkflowList(options) {
+  const { workflowsPath, usingFallback } = getWorkflowsPath(options.target);
+  if (!existsSync(workflowsPath)) {
+    console.log('No workflows registry found.');
+    return;
+  }
+  if (usingFallback) {
+    console.log('\x1b[33mNotice: Local workflows registry not found. Using bundled workflows registry fallback.\x1b[0m');
+  }
+  try {
+    const registry = parseYaml(readFileSync(workflowsPath, 'utf8')) || {};
+    const workflows = registry.workflows || {};
+    console.log(`\n⚙ \x1b[36mRegistered Workflows\x1b[0m`);
+    console.log('==================================================');
+    Object.keys(workflows).forEach(key => {
+      const wf = workflows[key];
+      const name = wf.name || key;
+      const risk = wf.risk_level || 'unknown';
+      const riskColor = risk === 'low' ? '\x1b[32m' : risk === 'medium' ? '\x1b[33m' : '\x1b[31m';
+      console.log(`\n  \x1b[34m* ${name}\x1b[0m (\x1b[35m${key}\x1b[0m)`);
+      console.log(`    Description: ${wf.description || 'No description'}`);
+      console.log(`    Risk Level:  ${riskColor}${risk.toUpperCase()}\x1b[0m`);
+    });
+    console.log();
+  } catch (e) {
+    console.error(`\x1b[31mError loading workflows: ${e.message}\x1b[0m`);
+  }
+}
+
+function handleWorkflowShow(wName, options) {
+  const { workflowsPath, usingFallback } = getWorkflowsPath(options.target);
+  if (!existsSync(workflowsPath)) {
+    console.log('No workflows registry found.');
+    return;
+  }
+  if (usingFallback) {
+    console.log('\x1b[33mNotice: Local workflows registry not found. Using bundled workflows registry fallback.\x1b[0m');
+  }
+  try {
+    const registry = parseYaml(readFileSync(workflowsPath, 'utf8')) || {};
+    const workflows = registry.workflows || {};
+    const wf = workflows[wName];
+    if (!wf) {
+      console.error(`\x1b[31mError: Workflow '${wName}' not found in registry.\x1b[0m`);
+      process.exit(1);
+    }
+    const name = wf.name || wName;
+    const risk = wf.risk_level || 'unknown';
+    const riskColor = risk === 'low' ? '\x1b[32m' : risk === 'medium' ? '\x1b[33m' : '\x1b[31m';
+    console.log(`\n⚙ \x1b[36mWorkflow Spec: ${name}\x1b[0m`);
+    console.log('==================================================');
+    console.log(`  Description:             ${wf.description || 'No description'}`);
+    console.log(`  Risk Level:              ${riskColor}${risk.toUpperCase()}\x1b[0m`);
+    console.log(`  Allowed to write memory: ${wf.allowed_to_write_memory || false}`);
+    console.log(`  Allowed to modify code:  ${wf.allowed_to_modify_source || false}`);
+    console.log(`\n  \x1b[33mSteps:\x1b[0m`);
+    
+    const steps = wf.steps || [];
+    steps.forEach((step, idx) => {
+      console.log(`    ${idx + 1}. [${step.name}]`);
+      console.log(`       Command:         ${step.command}`);
+      console.log(`       Expected Output: ${step.expected_output || 'N/A'}`);
+      console.log(`       Next Action:     ${step.next_action || 'N/A'}`);
+    });
+    console.log();
+  } catch (e) {
+    console.error(`\x1b[31mError loading workflow '${wName}': ${e.message}\x1b[0m`);
+  }
+}
+
+function handleWorkflowPlan(wName, options) {
+  const { workflowsPath, usingFallback } = getWorkflowsPath(options.target);
+  if (!existsSync(workflowsPath)) {
+    console.log('No workflows registry found.');
+    return;
+  }
+  if (usingFallback) {
+    console.log('\x1b[33mNotice: Local workflows registry not found. Using bundled workflows registry fallback.\x1b[0m');
+  }
+  try {
+    const registry = parseYaml(readFileSync(workflowsPath, 'utf8')) || {};
+    const workflows = registry.workflows || {};
+    const wf = workflows[wName];
+    if (!wf) {
+      console.error(`\x1b[31mError: Workflow '${wName}' not found.\x1b[0m`);
+      process.exit(1);
+    }
+    const name = wf.name || wName;
+    console.log(`\n📝 \x1b[36mExecution Plan for Workflow: ${name}\x1b[0m`);
+    console.log('==================================================');
+    console.log(`\x1b[33m[DRY-RUN/PLAN ONLY] No commands will be run.\x1b[0m\n`);
+    const steps = wf.steps || [];
+    steps.forEach((step, idx) => {
+      console.log(`  Step ${idx + 1}: ${step.name}`);
+      console.log(`    Command:         ${step.command}`);
+      console.log(`    Expected Output: ${step.expected_output || 'N/A'}`);
+      console.log(`    Next Action:     ${step.next_action || 'N/A'}`);
+    });
+    console.log();
+  } catch (e) {
+    console.error(`\x1b[31mError loading workflow plan: ${e.message}\x1b[0m`);
+  }
+}
+
+function handleWorkflowRun(wName, options) {
+  const { workflowsPath, usingFallback } = getWorkflowsPath(options.target);
+  if (!existsSync(workflowsPath)) {
+    console.log('No workflows registry found.');
+    return;
+  }
+  if (usingFallback) {
+    console.log('\x1b[33mNotice: Local workflows registry not found. Using bundled workflows registry fallback.\x1b[0m');
+  }
+  try {
+    const registry = parseYaml(readFileSync(workflowsPath, 'utf8')) || {};
+    const workflows = registry.workflows || {};
+    const wf = workflows[wName];
+    if (!wf) {
+      console.error(`\x1b[31mError: Workflow '${wName}' not found.\x1b[0m`);
+      process.exit(1);
+    }
+
+    const name = wf.name || wName;
+    console.log(`\n🚀 \x1b[36mRunning Workflow: ${name}\x1b[0m`);
+    console.log('==================================================');
+
+    const steps = wf.steps || [];
+    const safeCommands = {
+      'scan': () => handleScan(options),
+      'doctor': () => handleDoctor(options),
+      'verify': () => handleVerify({ ...options, noExit: true }),
+      'memory diff': () => handleMemoryDiff({ ...options, noExit: true }),
+      'memory refresh': () => handleMemoryRefresh(options),
+      'memory build': () => handleMemoryBuild(options),
+      'feedback list': () => handleFeedbackList(options),
+      'feedback summarize': () => handleFeedbackSummarize(options),
+      'improve review': () => handleImproveReview(options),
+      'improve status': () => handleImproveStatus(options),
+      'improve log': () => handleImproveLog(options),
+      'doctor --release': () => handleDoctor({ ...options, release: true })
+    };
+
+    steps.forEach((step, idx) => {
+      console.log(`\n\x1b[33m[Step ${idx + 1}/${steps.length}] Running: ${step.name} (${step.command})\x1b[0m`);
+      const cmd = step.command;
+      if (safeCommands[cmd]) {
+        try {
+          safeCommands[cmd]();
+        } catch (e) {
+          console.error(`\x1b[31mError executing step ${step.name}: ${e.message}\x1b[0m`);
+        }
+      } else {
+        console.log(`  \x1b[35m[MANUAL ACTION NEEDED]\x1b[0m This step requires manual execution.`);
+        console.log(`  Please run command: \x1b[36mnpx multimodel-dev-os ${cmd}\x1b[0m`);
+        if (step.expected_output) {
+          console.log(`  Expected Output:    ${step.expected_output}`);
+        }
+      }
+    });
+    console.log(`\n✔ Workflow '${name}' complete.\n`);
+  } catch (e) {
+    console.error(`\x1b[31mError running workflow '${wName}': ${e.message}\x1b[0m`);
+  }
+}
+
+function handleHandoffBuild(options) {
+  const intelDir = join(options.target, '.ai', 'intelligence');
+  if (!existsSync(intelDir)) {
+    mkdirSync(intelDir, { recursive: true });
+  }
+  const handoffPath = join(intelDir, 'handoff.md');
+
+  // 1. Get package metadata
+  let pkgName = 'unknown';
+  let pkgVersion = 'unknown';
+  try {
+    const pkgPath = join(options.target, 'package.json');
+    if (existsSync(pkgPath)) {
+      const pkg = JSON.parse(readFileSync(pkgPath, 'utf8'));
+      pkgName = pkg.name || pkgName;
+      pkgVersion = pkg.version || pkgVersion;
+    }
+  } catch (e) {}
+
+  // 2. Scan targets
+  const { files } = scanTarget(options.target);
+  const frameworkSignals = detectFrameworkSignals(files, options.target);
+  const dependencySignals = detectDependencySignals(files, options.target);
+
+  // 3. Memory
+  const memoryHashPath = join(intelDir, 'memory.hash.json');
+  let memoryStatus = 'MISSING';
+  let memoryTime = 'N/A';
+  if (existsSync(memoryHashPath)) {
+    try {
+      const memObj = JSON.parse(readFileSync(memoryHashPath, 'utf8'));
+      memoryTime = memObj.generated_at || 'N/A';
+      const diff = diffMemory(options.target);
+      if (diff) {
+        memoryStatus = (diff.added.length === 0 && diff.removed.length === 0 && diff.changed.length === 0) ? 'CURRENT' : 'STALE';
+      }
+    } catch (e) {
+      memoryStatus = 'CORRUPT';
+    }
+  }
+
+  // 4. Feedback
+  const feedbackPath = join(intelDir, 'feedback-log.jsonl');
+  let feedbackCount = 0;
+  if (existsSync(feedbackPath)) {
+    try {
+      feedbackCount = readFileSync(feedbackPath, 'utf8').trim().split(/\r?\n/).filter(l => l.trim() !== '').length;
+    } catch (e) {}
+  }
+  const rulesPath = join(intelDir, 'learning-rules.md');
+  const rulesStatus = existsSync(rulesPath) ? 'PRESENT' : 'MISSING';
+
+  // 5. Proposals
+  const proposalsDir = join(options.target, '.ai', 'proposals');
+  let pendingCount = 0;
+  let approvedCount = 0;
+  let rejectedCount = 0;
+  if (existsSync(proposalsDir)) {
+    try {
+      const propFiles = readdirSync(proposalsDir).filter(f => f.startsWith('proposal-') && f.endsWith('.md'));
+      propFiles.forEach(file => {
+        const content = readFileSync(join(proposalsDir, file), 'utf8');
+        const fmMatch = content.match(/^---([\s\S]*?)---/);
+        if (fmMatch) {
+          const metadata = parseYaml(fmMatch[1]) || {};
+          const status = metadata.approval_status || 'pending';
+          if (status === 'approved') approvedCount++;
+          else if (status === 'rejected') rejectedCount++;
+          else pendingCount++;
+        }
+      });
+    } catch (e) {}
+  }
+
+  // 6. Apply logs
+  const applyLogPath = join(proposalsDir, 'apply-log.jsonl');
+  let applyLogCount = 0;
+  let lastApplyId = 'None';
+  if (existsSync(applyLogPath)) {
+    try {
+      const lines = readFileSync(applyLogPath, 'utf8').trim().split(/\r?\n/).filter(l => l.trim() !== '');
+      applyLogCount = lines.length;
+      if (applyLogCount > 0) {
+        const lastRecord = JSON.parse(lines[lines.length - 1]);
+        lastApplyId = lastRecord.id || 'unknown';
+      }
+    } catch (e) {}
+  }
+
+  // 7. Core Learning Summary
+  let rulesSummary = 'No learning rules defined yet.';
+  if (existsSync(rulesPath)) {
+    try {
+      const rulesContent = readFileSync(rulesPath, 'utf8');
+      const lines = rulesContent.split(/\r?\n/);
+      const summaryLines = [];
+      for (const line of lines) {
+        if (line.startsWith('*   **Pattern:**') || line.startsWith('    *   **Rule:**')) {
+          summaryLines.push(line);
+        }
+        if (summaryLines.length >= 10) break;
+      }
+      if (summaryLines.length > 0) {
+        rulesSummary = summaryLines.join('\n');
+      }
+    } catch (e) {}
+  }
+
+  // Next steps recommended
+  let recs = '1. Run `npx multimodel-dev-os workflow run repo-health` to check the directory hygiene.\n2. Review pending proposals if any exist.';
+  if (!existsSync(join(options.target, '.ai', 'config.yaml'))) {
+    recs = '1. Run `npx multimodel-dev-os init` to bootstrap MultiModel Dev OS.\n2. Run `npx multimodel-dev-os memory build` to initialize codebase memory.';
+  } else if (memoryStatus === 'MISSING') {
+    recs = '1. Run `npx multimodel-dev-os memory build` to initialize codebase index.\n2. Verify package safety boundaries.';
+  } else if (memoryStatus === 'STALE') {
+    recs = '1. Run `npx multimodel-dev-os memory refresh` to update memory files.\n2. Analyze modifications.';
+  } else if (pendingCount > 0) {
+    recs = `1. Run \`npx multimodel-dev-os improve review\` to inspect the ${pendingCount} pending proposals.\n2. Apply approved changes manually.`;
+  }
+
+  const handoffContent = `# Agent Handoff Spec - ${new Date().toISOString()}
+
+## 1. Project Context
+- **Name**: ${pkgName}
+- **Version**: ${pkgVersion}
+- **Frameworks**: ${frameworkSignals.join(', ') || 'None'}
+- **Dependencies**: ${dependencySignals.join(', ') || 'None'}
+
+## 2. Intelligence Core State
+- **Memory**: ${memoryStatus} (Last build: ${memoryTime})
+- **Feedback Loop**: ${feedbackCount} items logged. \`learning-rules.md\` is ${rulesStatus}.
+- **Proposals**: ${pendingCount} Pending, ${approvedCount} Approved, ${rejectedCount} Rejected.
+- **Applied Modifications**: ${applyLogCount} runs recorded. Last run: ${lastApplyId}.
+
+## 3. Core Learning Summaries
+\`\`\`markdown
+${rulesSummary}
+\`\`\`
+
+## 4. Safety Constraints
+- Workflow run is restricted to read-only actions.
+- Modifications must be applied explicitly via \`improve apply --approved\`.
+- No code modification permissions exist in this session context.
+
+## 5. Recommended Next Steps
+${recs}
+`;
+
+  try {
+    writeFileSync(handoffPath, handoffContent, 'utf8');
+    console.log(`\n✔ Handoff context built successfully in: .ai/intelligence/handoff.md`);
+  } catch (e) {
+    console.error(`\x1b[31mError writing handoff: ${e.message}\x1b[0m`);
+  }
+}
+
+function handleHandoffShow(options) {
+  const handoffPath = join(options.target, '.ai', 'intelligence', 'handoff.md');
+  if (!existsSync(handoffPath)) {
+    console.log('No compiled handoff file exists. Building first...');
+    handleHandoffBuild(options);
+  }
+  try {
+    const content = readFileSync(handoffPath, 'utf8');
+    console.log('\n' + content);
+  } catch (e) {
+    console.error(`\x1b[31mError reading handoff: ${e.message}\x1b[0m`);
+  }
+}
+
+function handleDoctorIntelligence(options) {
+  console.log(`\n🩺 \x1b[36mRunning advisory intelligence doctor checkup in: ${options.target}\x1b[0m\n`);
+
+  let warnings = 0;
+  const warn = (msg) => {
+    console.warn(`  \x1b[33m[WARNING]\x1b[0m ${msg}`);
+    warnings++;
+  };
+
+  // 1. Memory checks
+  const memoryHashPath = join(options.target, '.ai', 'intelligence', 'memory.hash.json');
+  if (!existsSync(memoryHashPath)) {
+    warn('Memory hash index (.ai/intelligence/memory.hash.json) is MISSING. Run `memory build` first.');
+  } else {
+    try {
+      const diff = diffMemory(options.target);
+      if (!diff) {
+        warn('Memory hash index is present but corrupt.');
+      } else if (diff.added.length > 0 || diff.removed.length > 0 || diff.changed.length > 0) {
+        warn(`Memory hash index is STALE. Delts: +${diff.added.length}, -${diff.removed.length}, ~${diff.changed.length}. Run \`memory refresh\`.`);
+      }
+    } catch (e) {
+      warn('Failed to diff memory index.');
+    }
+  }
+
+  // 2. Feedback checks
+  const feedbackPath = join(options.target, '.ai', 'intelligence', 'feedback-log.jsonl');
+  if (!existsSync(feedbackPath)) {
+    warn('Feedback log (.ai/intelligence/feedback-log.jsonl) is MISSING.');
+  }
+  const rulesPath = join(options.target, '.ai', 'intelligence', 'learning-rules.md');
+  if (!existsSync(rulesPath)) {
+    warn('Learning rules (.ai/intelligence/learning-rules.md) are MISSING. Run `feedback summarize` to compile logs.');
+  }
+
+  // 3. Proposals checks
+  const proposalsDir = join(options.target, '.ai', 'proposals');
+  if (!existsSync(proposalsDir)) {
+    warn('Proposals directory (.ai/proposals) is MISSING.');
+  } else {
+    try {
+      const files = readdirSync(proposalsDir).filter(f => f.startsWith('proposal-') && f.endsWith('.md'));
+      let pending = 0;
+      files.forEach(file => {
+        const content = readFileSync(join(proposalsDir, file), 'utf8');
+        const fmMatch = content.match(/^---([\s\S]*?)---/);
+        if (fmMatch) {
+          const metadata = parseYaml(fmMatch[1]) || {};
+          if ((metadata.approval_status || 'pending') === 'pending') {
+            pending++;
+          }
+        }
+      });
+      if (pending > 0) {
+        warn(`Found ${pending} pending improvement proposals waiting for approval.`);
+      }
+    } catch (e) {}
+  }
+
+  // 4. Apply log check
+  const applyLogPath = join(options.target, '.ai', 'proposals', 'apply-log.jsonl');
+  if (!existsSync(applyLogPath)) {
+    warn('Apply audit log (.ai/proposals/apply-log.jsonl) is MISSING.');
+  }
+
+  // 5. Gitignore ignores intelligence checks
+  const gitignorePath = join(options.target, '.gitignore');
+  if (existsSync(gitignorePath)) {
+    const gitignoreContent = readFileSync(gitignorePath, 'utf8');
+    const checkIgnore = (pattern) => {
+      if (!gitignoreContent.includes(pattern)) {
+        warn(`.gitignore is missing rules ignoring: ${pattern}`);
+      }
+    };
+    checkIgnore('.ai/intelligence/handoff.md');
+    checkIgnore('.ai/intelligence/status.snapshot.json');
+    checkIgnore('.ai/intelligence/feedback-log.jsonl');
+    checkIgnore('.ai/intelligence/learning-rules.md');
+    checkIgnore('.ai/proposals/apply-log.jsonl');
+  } else {
+    warn('.gitignore file is missing in target root.');
+  }
+
+  // 6. Danger files check inside memory index
+  if (existsSync(memoryHashPath)) {
+    try {
+      const memObj = JSON.parse(readFileSync(memoryHashPath, 'utf8'));
+      const fingerprints = memObj.file_fingerprints || {};
+      Object.keys(fingerprints).forEach(file => {
+        const name = file.toLowerCase();
+        if (name.includes('.env') || name.includes('id_rsa') || name.includes('credential') || name.endsWith('.pem') || name.endsWith('.p12') || name.endsWith('.key') || name.endsWith('.keystore') || name.endsWith('.jks')) {
+          warn(`Memory index contains potentially sensitive file: ${file}`);
+        }
+      });
+    } catch (e) {}
+  }
+
+  console.log('\n==================================================');
+  if (warnings > 0) {
+    console.log(`\x1b[33mDoctor intelligence check complete. Found ${warnings} warnings.\x1b[0m\n`);
+  } else {
+    console.log('\x1b[32m✔ Doctor intelligence check complete. Your intelligence setup is pristine!\x1b[0m\n');
+  }
+}
+
+function getAnalysis(target) {
+  const { files, ignoredCount } = scanTarget(target);
+  const frameworks = detectFrameworkSignals(files, target);
+  const packageManagers = detectDependencySignals(files, target);
+  const aiSignals = detectAiDevOsSignals(files);
+
+  let jsCount = 0, tsCount = 0, phpCount = 0, pyCount = 0, mdCount = 0;
+  files.forEach(f => {
+    const ext = f.relPath.substring(f.relPath.lastIndexOf('.')).toLowerCase();
+    if (ext === '.js' || ext === '.mjs' || ext === '.cjs') jsCount++;
+    else if (ext === '.ts' || ext === '.tsx') tsCount++;
+    else if (ext === '.php') phpCount++;
+    else if (ext === '.py') pyCount++;
+    else if (ext === '.md') mdCount++;
+  });
+
+  let language = 'mixed';
+  if (tsCount > jsCount && tsCount > phpCount && tsCount > pyCount && tsCount > mdCount) language = 'TS';
+  else if (jsCount > tsCount && jsCount > phpCount && jsCount > pyCount && jsCount > mdCount) language = 'JS';
+  else if (phpCount > jsCount && phpCount > tsCount && phpCount > pyCount && phpCount > mdCount) language = 'PHP';
+  else if (pyCount > jsCount && pyCount > tsCount && phpCount > pyCount && phpCount > mdCount) language = 'Python';
+  else if (mdCount > jsCount && mdCount > tsCount && mdCount > phpCount && mdCount > pyCount) language = 'Markdown-heavy';
+
+  let repoType = 'app';
+  if (files.some(f => f.relPath.includes('wp-content/themes') || f.relPath.includes('wp-content/plugins'))) {
+    repoType = 'WordPress theme/plugin';
+  } else if (files.some(f => f.relPath.includes('app.json') || f.relPath.includes('eas.json'))) {
+    repoType = 'mobile app';
+  } else if (files.some(f => f.relPath.includes('lerna.json') || f.relPath.includes('pnpm-workspace.yaml'))) {
+    repoType = 'monorepo';
+  } else if (files.some(f => f.relPath.includes('docs/')) && mdCount > (files.length * 0.4)) {
+    repoType = 'docs';
+  } else if (files.some(f => f.relPath === 'package.json')) {
+    try {
+      const pkg = JSON.parse(readFileSync(join(target, 'package.json'), 'utf8'));
+      if (pkg.main && (pkg.main.includes('dist/') || pkg.main.includes('lib/'))) {
+        repoType = 'library';
+      }
+    } catch (e) {}
+  }
+
+  const existingTools = [];
+  if (files.some(f => f.relPath === '.cursorrules')) existingTools.push('Cursor');
+  if (files.some(f => f.relPath === 'CLAUDE.md')) existingTools.push('Claude');
+  if (files.some(f => f.relPath === 'GEMINI.md')) existingTools.push('Gemini');
+  if (files.some(f => f.relPath.startsWith('.vscode/'))) existingTools.push('VS Code');
+  if (files.some(f => f.relPath.startsWith('.gemini/'))) existingTools.push('Antigravity');
+
+  const packageScripts = [];
+  if (files.some(f => f.relPath === 'package.json')) {
+    try {
+      const pkg = JSON.parse(readFileSync(join(target, 'package.json'), 'utf8'));
+      if (pkg.scripts) {
+        Object.keys(pkg.scripts).forEach(k => packageScripts.push(k));
+      }
+    } catch (e) {}
+  }
+
+  const githubWorkflows = [];
+  const githubDir = join(target, '.github', 'workflows');
+  if (existsSync(githubDir)) {
+    try {
+      readdirSync(githubDir).forEach(f => {
+        if (f.endsWith('.yml') || f.endsWith('.yaml')) githubWorkflows.push(f);
+      });
+    } catch (e) {}
+  }
+
+  const envRiskMarkers = [];
+  files.forEach(f => {
+    const name = f.relPath.toLowerCase();
+    if (name.includes('.env') || name.includes('id_rsa') || name.includes('credential') || name.endsWith('.pem') || name.endsWith('.key') || name.endsWith('.keystore') || name.endsWith('.jks')) {
+      envRiskMarkers.push(f.relPath);
+    }
+  });
+
+  return {
+    packageManagers,
+    frameworks,
+    language,
+    repoType,
+    existingTools,
+    packageScripts,
+    githubWorkflows,
+    envRiskMarkers,
+    aiSignals,
+    filesCount: files.length,
+    ignoredCount
+  };
+}
+
+function getRecommendation(analysis) {
+  const scores = {
+    'nextjs-saas': 0.0,
+    'expo-react-native-android': 0.0,
+    'wordpress-site': 0.0,
+    'ecommerce-store': 0.0,
+    'seo-landing-page': 0.0,
+    'general-app': 0.1
+  };
+
+  if (analysis.frameworks.includes('Next.js')) scores['nextjs-saas'] += 0.6;
+  if (analysis.frameworks.includes('React')) scores['nextjs-saas'] += 0.2;
+  if (analysis.frameworks.includes('TypeScript')) scores['nextjs-saas'] += 0.1;
+
+  if (analysis.repoType === 'mobile app') scores['expo-react-native-android'] += 0.6;
+  if (analysis.frameworks.includes('Expo') || analysis.frameworks.includes('React Native')) scores['expo-react-native-android'] += 0.3;
+
+  if (analysis.repoType === 'WordPress theme/plugin') scores['wordpress-site'] += 0.6;
+  if (analysis.frameworks.includes('WordPress/PHP')) scores['wordpress-site'] += 0.3;
+
+  if (analysis.frameworks.includes('Vite') || analysis.frameworks.includes('React')) scores['seo-landing-page'] += 0.3;
+
+  let recommended = 'general-app';
+  let maxScore = 0.0;
+  Object.keys(scores).forEach(k => {
+    if (scores[k] > maxScore) {
+      maxScore = scores[k];
+      recommended = k;
+    }
+  });
+
+  const suggestedAdapters = ['cursor', 'claude', 'gemini', 'vscode', 'antigravity'];
+
+  return {
+    template: recommended,
+    confidence: Math.min(1.0, maxScore === 0.1 ? 0.5 : maxScore),
+    suggestedAdapters,
+    riskNotes: analysis.envRiskMarkers.length > 0 ? 'Workspace contains unignored credentials or key files. Ensure .gitignore covers them.' : 'None'
+  };
+}
+
+function handleOnboardAnalyze(options) {
+  console.log(`\n🔍 \x1b[36mAnalyzing Workspace for Onboarding: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+  const analysis = getAnalysis(options.target);
+
+  console.log(`  Package Manager:       ${analysis.packageManagers.join(', ') || 'None'}`);
+  console.log(`  Detected Frameworks:   ${analysis.frameworks.join(', ') || 'None'}`);
+  console.log(`  Dominant Language:     ${analysis.language}`);
+  console.log(`  Repository Type:       ${analysis.repoType}`);
+  console.log(`  Existing AI Tools:     ${analysis.existingTools.join(', ') || 'None'}`);
+  console.log(`  GitHub Workflows:      ${analysis.githubWorkflows.join(', ') || 'None'}`);
+  console.log(`  Security Risk Markers: ${analysis.envRiskMarkers.length} files found`);
+  if (analysis.envRiskMarkers.length > 0) {
+    analysis.envRiskMarkers.forEach(m => console.log(`    └─> ${m} (potential secrets exposure risk)`));
+  }
+  console.log();
+}
+
+function handleOnboardRecommend(options) {
+  const analysis = getAnalysis(options.target);
+  const rec = getRecommendation(analysis);
+
+  console.log(`\n💡 \x1b[36mOnboarding Recommendation for: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+  console.log(`  Recommended Template:  \x1b[32m${rec.template}\x1b[0m`);
+  console.log(`  Confidence Score:      ${(rec.confidence * 100).toFixed(0)}%`);
+  console.log(`  Suggested Adapters:    ${rec.suggestedAdapters.join(', ')}`);
+  console.log(`  Risk Notes:            ${rec.riskNotes}`);
+  console.log(`  Suggested Next Command:`);
+  console.log(`    npx multimodel-dev-os onboard plan --target .`);
+  console.log();
+}
+
+function handleOnboardPlan(options) {
+  console.log(`\n📋 \x1b[36mGenerating Onboarding Plan: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+  const analysis = getAnalysis(options.target);
+  const rec = getRecommendation(analysis);
+
+  const planPath = join(options.target, '.ai', 'intelligence', 'onboarding.plan.json');
+  const reportPath = join(options.target, '.ai', 'intelligence', 'onboarding.report.md');
+
+  const plannedFiles = [
+    { action: 'CREATE', path: 'AGENTS.md', source_template: `examples/${rec.template}/AGENTS.md` },
+    { action: 'CREATE', path: 'MEMORY.md', source_template: `examples/${rec.template}/MEMORY.md` },
+    { action: 'CREATE', path: 'TASKS.md', source_template: `examples/${rec.template}/TASKS.md` },
+    { action: 'CREATE', path: 'RUNBOOK.md', source_template: `RUNBOOK.md` },
+    { action: 'CREATE', path: '.ai/config.yaml', source_template: `examples/${rec.template}/.ai/config.yaml` }
+  ];
+
+  const planData = {
+    generated_at: new Date().toISOString(),
+    target_path: options.target,
+    project_analysis: {
+      package_manager: analysis.packageManagers.join(', ') || 'npm',
+      framework: analysis.frameworks.join(', ') || 'Generic',
+      language: analysis.language,
+      repo_type: analysis.repoType,
+      has_existing_ai_config: analysis.aiSignals.includes('.ai/config.yaml'),
+      risk_markers: analysis.envRiskMarkers
+    },
+    recommendation: {
+      template: rec.template,
+      confidence: rec.confidence,
+      suggested_adapters: rec.suggestedAdapters,
+      reasons: [`Detected dominant language ${analysis.language}`, `Detected framework ${analysis.frameworks.join(', ')}`]
+    },
+    planned_files: plannedFiles
+  };
+
+  let reportMd = `# MultiModel Dev OS Onboarding Report\n\n`;
+  reportMd += `**Generated At:** ${planData.generated_at}\n`;
+  reportMd += `**Target Path:** ${planData.target_path}\n\n`;
+  reportMd += `## 1. Project Analysis Details\n`;
+  reportMd += `- **Package Manager:** ${planData.project_analysis.package_manager}\n`;
+  reportMd += `- **Frameworks:** ${planData.project_analysis.framework}\n`;
+  reportMd += `- **Language:** ${planData.project_analysis.language}\n`;
+  reportMd += `- **Repo Type:** ${planData.project_analysis.repo_type}\n\n`;
+
+  reportMd += `## 2. Onboarding Recommendation\n`;
+  reportMd += `- **Recommended Profile:** **${planData.recommendation.template}** (Confidence: ${(planData.recommendation.confidence * 100).toFixed(0)}%)\n`;
+  reportMd += `- **Suggested Adapters:** ${planData.recommendation.suggested_adapters.join(', ')}\n\n`;
+
+  reportMd += `## 3. Planned File Operations\n`;
+  reportMd += `| Action | Target Path | Source Template |\n`;
+  reportMd += `|---|---|---|\n`;
+  plannedFiles.forEach(f => {
+    reportMd += `| ${f.action} | ${f.path} | ${f.source_template} |\n`;
+  });
+  reportMd += `\n`;
+
+  reportMd += `## 4. Next Step\n`;
+  reportMd += `To safely apply this plan, run:\n`;
+  reportMd += `\`\`\`bash\n`;
+  reportMd += `npx multimodel-dev-os onboard apply --target . --approved\n`;
+  reportMd += `\`\`\`\n`;
+
+  try {
+    const intelDir = join(options.target, '.ai', 'intelligence');
+    if (!options.dryRun && !existsSync(intelDir)) {
+      mkdirSync(intelDir, { recursive: true });
+    }
+    if (!options.dryRun) {
+      writeFileSync(planPath, JSON.stringify(planData, null, 2), 'utf8');
+      writeFileSync(reportPath, reportMd, 'utf8');
+    }
+
+    console.log(`  [SUCCESS] Onboarding plan generated:`);
+    console.log(`    - Plan JSON:   .ai/intelligence/onboarding.plan.json`);
+    console.log(`    - Report MD:   .ai/intelligence/onboarding.report.md`);
+    console.log(`\nReview the plan and run "npx multimodel-dev-os onboard apply --target . --approved" to execute.\n`);
+  } catch (e) {
+    console.error(`\x1b[31mError writing plan: ${e.message}\x1b[0m`);
+  }
+}
+
+function handleOnboardApply(options) {
+  if (!options.approved) {
+    console.error('\x1b[31mError: Onboarding apply requires explicit approval flag: --approved\x1b[0m');
+    console.log('Example: node bin/multimodel-dev-os.js onboard apply --approved');
+    process.exit(1);
+  }
+
+  const planPath = join(options.target, '.ai', 'intelligence', 'onboarding.plan.json');
+  if (!existsSync(planPath)) {
+    console.error('\x1b[31mError: Onboarding plan not found. Run "npx multimodel-dev-os onboard plan" first.\x1b[0m');
+    process.exit(1);
+  }
+
+  let plan;
+  try {
+    plan = JSON.parse(readFileSync(planPath, 'utf8'));
+  } catch (e) {
+    console.error(`\x1b[31mError reading plan JSON: ${e.message}\x1b[0m`);
+    process.exit(1);
+  }
+
+  console.log(`\n🚀 \x1b[36mApplying Onboarding Scaffolding: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+
+  const template = plan.recommendation.template;
+  options.template = template;
+
+  const operations = [];
+
+  plan.planned_files.forEach(f => {
+    let srcFile;
+    if (f.source_template === 'RUNBOOK.md') {
+      srcFile = join(sourceRoot, 'RUNBOOK.md');
+    } else {
+      srcFile = join(sourceRoot, f.source_template);
+    }
+    operations.push({ dest: f.path, src: srcFile });
+  });
+
+  const templateDir = join(sourceRoot, 'examples', template);
+  const templateAiDir = join(templateDir, '.ai');
+  if (existsSync(templateAiDir) && !options.caveman) {
+    const subdirs = ['context', 'skills'];
+    subdirs.forEach(sub => {
+      const subPath = join(templateAiDir, sub);
+      if (existsSync(subPath)) {
+        readdirSync(subPath).forEach(file => {
+          operations.push({
+            dest: join('.ai', sub, file),
+            src: join(subPath, file)
+          });
+        });
+      }
+    });
+  }
+
+  const globalAiSubdirs = ['context', 'agents', 'skills', 'prompts', 'checks', 'templates', 'session-logs', 'registries', 'proposals', 'intelligence'];
+  globalAiSubdirs.forEach(sub => {
+    const globalPath = join(sourceRoot, '.ai', sub);
+    if (existsSync(globalPath)) {
+      readdirSync(globalPath).forEach(file => {
+        const destRel = join('.ai', sub, file);
+        if (!operations.some(op => op.dest === destRel)) {
+          if (options.caveman && (sub === 'context' || sub === 'skills' || sub === 'prompts' || sub === 'checks')) {
+            return;
+          }
+          operations.push({
+            dest: destRel,
+            src: join(globalPath, file)
+          });
+        }
+      });
+    }
+  });
+
+  let createdCount = 0;
+  let skippedCount = 0;
+  let updatedCount = 0;
+
+  operations.forEach(op => {
+    const destPath = join(options.target, op.dest);
+    const destDir = dirname(destPath);
+
+    if (existsSync(destPath)) {
+      if (options.force) {
+        if (!options.dryRun) {
+          const backupPath = destPath + '.bak';
+          writeFileSync(backupPath, readFileSync(destPath));
+          if (!existsSync(destDir)) mkdirSync(destDir, { recursive: true });
+          writeFileSync(destPath, readFileSync(op.src));
+          console.log(`  \x1b[33mOVERWRITE (BACKUP CREATED):\x1b[0m ${op.dest} -> ${op.dest}.bak`);
+        } else {
+          console.log(`  \x1b[36m[DRY-RUN] WOULD OVERWRITE & BACKUP:\x1b[0m ${op.dest}`);
+        }
+        updatedCount++;
+      } else {
+        console.log(`  \x1b[37m[SKIP] Already exists:\x1b[0m ${op.dest}`);
+        skippedCount++;
+      }
+    } else {
+      if (!options.dryRun) {
+        if (!existsSync(destDir)) mkdirSync(destDir, { recursive: true });
+        writeFileSync(destPath, readFileSync(op.src));
+        console.log(`  \x1b[32mCREATE:\x1b[0m ${op.dest}`);
+      } else {
+        console.log(`  \x1b[36m[DRY-RUN] WOULD CREATE:\x1b[0m ${op.dest}`);
+      }
+      createdCount++;
+    }
+  });
+
+  console.log(`\n✔ Onboarding apply complete! Created: ${createdCount}, Skipped: ${skippedCount}, Overwritten (with backup): ${updatedCount}\n`);
+}
+
+function handleOnboardStatus(options) {
+  console.log(`\n📊 \x1b[36mOnboarding Status Dashboard: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+
+  const crucialFiles = [
+    'AGENTS.md',
+    'MEMORY.md',
+    'TASKS.md',
+    'RUNBOOK.md',
+    '.ai/config.yaml'
+  ];
+
+  let presentCount = 0;
+  crucialFiles.forEach(f => {
+    const fullPath = join(options.target, f);
+    const exists = existsSync(fullPath);
+    if (exists) presentCount++;
+    console.log(`  [${exists ? '✔' : ' '}] ${f}`);
+  });
+
+  const percentage = (presentCount / crucialFiles.length) * 100;
+  console.log(`\n  Completeness Score: ${percentage.toFixed(0)}%`);
+  if (percentage === 100) {
+    console.log('  Status: \x1b[32mREADY (Onboarding complete)\x1b[0m\n');
+  } else if (percentage > 0) {
+    console.log('  Status: \x1b[33mIN_PROGRESS (Run "onboard apply --approved" to initialize remaining files)\x1b[0m\n');
+  } else {
+    console.log('  Status: \x1b[31mMISSING (Run "onboard plan" and "onboard apply" to onboard this repo)\x1b[0m\n');
+  }
+}
+
+function getEnabledAdapters(target) {
+  const configPath = join(target, '.ai', 'config.yaml');
+  if (existsSync(configPath)) {
+    try {
+      const config = parseYaml(readFileSync(configPath, 'utf8')) || {};
+      return config.adapters || {};
+    } catch (e) {}
+  }
+  return {};
+}
+
+function handleAdapterStatus(options) {
+  console.log(`\n🔌 \x1b[36mIDE & Agent Adapters Status: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+
+  const enabled = getEnabledAdapters(options.target);
+
+  Object.keys(ADAPTERS).forEach(name => {
+    const a = ADAPTERS[name];
+    const isEnabled = enabled[name] || false;
+    const rulesFile = a.rules_file;
+    const exists = existsSync(join(options.target, rulesFile));
+
+    let statusStr = '\x1b[31mMISSING\x1b[0m';
+    if (exists) {
+      statusStr = '\x1b[32mINSTALLED\x1b[0m';
+    }
+
+    console.log(`\n\x1b[33m* ${a.name || name}\x1b[0m (${name})`);
+    console.log(`  Config Status: ${isEnabled ? '\x1b[32mENABLED\x1b[0m' : '\x1b[37mDISABLED\x1b[0m'}`);
+    console.log(`  File Status:   ${statusStr} (${rulesFile})`);
+  });
+  console.log();
+}
+
+function printDiff(srcContent, destContent, filename) {
+  console.log(`\nDiff for ${filename}:`);
+  console.log('--------------------------------------------------');
+  if (srcContent === destContent) {
+    console.log('  Pristine (No differences detected)');
+    return;
+  }
+  const srcLines = srcContent.split(/\r?\n/);
+  const destLines = destContent.split(/\r?\n/);
+
+  let i = 0;
+  while (i < Math.max(srcLines.length, destLines.length)) {
+    const sLine = srcLines[i];
+    const dLine = destLines[i];
+    if (sLine !== dLine) {
+      if (dLine !== undefined) console.log(`\x1b[31m- ${dLine}\x1b[0m`);
+      if (sLine !== undefined) console.log(`\x1b[32m+ ${sLine}\x1b[0m`);
+    } else {
+      if (sLine !== undefined) console.log(`  ${sLine}`);
+    }
+    i++;
+  }
+}
+
+function handleAdapterDiff(aName, options) {
+  const adaptersToDiff = [];
+  if (aName === 'all') {
+    const enabled = getEnabledAdapters(options.target);
+    Object.keys(ADAPTERS).forEach(name => {
+      if (enabled[name]) adaptersToDiff.push(name);
+    });
+  } else {
+    if (!ADAPTERS[aName]) {
+      console.error(`\x1b[31mError: Adapter '${aName}' not found in registry.\x1b[0m`);
+      process.exit(1);
+    }
+    adaptersToDiff.push(aName);
+  }
+
+  if (adaptersToDiff.length === 0) {
+    console.log('No enabled adapters found to diff.');
+    return;
+  }
+
+  adaptersToDiff.forEach(name => {
+    const a = ADAPTERS[name];
+    const srcFile = join(sourceRoot, 'adapters', name, a.rules_file);
+    const destFile = join(options.target, a.rules_file);
+
+    if (!existsSync(srcFile)) {
+      console.warn(`Warning: Source file for adapter '${name}' is missing at: ${srcFile}`);
+      return;
+    }
+
+    const srcContent = readFileSync(srcFile, 'utf8');
+    if (existsSync(destFile)) {
+      const destContent = readFileSync(destFile, 'utf8');
+      printDiff(srcContent, destContent, a.rules_file);
+    } else {
+      console.log(`\nFile: ${a.rules_file} \x1b[31m(MISSING)\x1b[0m`);
+      console.log('--------------------------------------------------');
+      srcContent.split(/\r?\n/).forEach(l => console.log(`\x1b[32m+ ${l}\x1b[0m`));
+    }
+  });
+}
+
+function handleAdapterSync(aName, options) {
+  if (!options.approved) {
+    console.error('\x1b[31mError: Adapter sync requires explicit approval flag: --approved\x1b[0m');
+    console.log('Example: node bin/multimodel-dev-os.js adapter sync cursor --approved');
+    process.exit(1);
+  }
+
+  const adaptersToSync = [];
+  if (aName === 'all') {
+    const enabled = getEnabledAdapters(options.target);
+    Object.keys(ADAPTERS).forEach(name => {
+      if (enabled[name]) adaptersToSync.push(name);
+    });
+  } else {
+    if (!ADAPTERS[aName]) {
+      console.error(`\x1b[31mError: Adapter '${aName}' not found in registry.\x1b[0m`);
+      process.exit(1);
+    }
+    adaptersToSync.push(aName);
+  }
+
+  if (adaptersToSync.length === 0) {
+    console.log('No adapters found to sync.');
+    return;
+  }
+
+  console.log(`\n🔄 \x1b[36mSynchronizing IDE Adapters in: ${options.target}\x1b[0m`);
+  console.log('==================================================');
+
+  adaptersToSync.forEach(name => {
+    const a = ADAPTERS[name];
+    const srcFile = join(sourceRoot, 'adapters', name, a.rules_file);
+    const destFile = join(options.target, a.rules_file);
+    const destDir = dirname(destFile);
+
+    if (!existsSync(srcFile)) {
+      console.warn(`Warning: Source file for adapter '${name}' is missing at: ${srcFile}`);
+      return;
+    }
+
+    if (existsSync(destFile)) {
+      if (options.force) {
+        if (!options.dryRun) {
+          const backupPath = destFile + '.bak';
+          writeFileSync(backupPath, readFileSync(destFile));
+          if (!existsSync(destDir)) mkdirSync(destDir, { recursive: true });
+          writeFileSync(destFile, readFileSync(srcFile));
+          console.log(`  \x1b[33mOVERWRITE (BACKUP CREATED):\x1b[0m ${a.rules_file} -> ${a.rules_file}.bak`);
+        } else {
+          console.log(`  \x1b[36m[DRY-RUN] WOULD OVERWRITE & BACKUP:\x1b[0m ${a.rules_file}`);
+        }
+      } else {
+        console.log(`  \x1b[37m[SKIP] Already exists:\x1b[0m ${a.rules_file}`);
+      }
+    } else {
+      if (!options.dryRun) {
+        if (!existsSync(destDir)) mkdirSync(destDir, { recursive: true });
+        writeFileSync(destFile, readFileSync(srcFile));
+        console.log(`  \x1b[32mCREATE:\x1b[0m ${a.rules_file}`);
+      } else {
+        console.log(`  \x1b[36m[DRY-RUN] WOULD CREATE:\x1b[0m ${a.rules_file}`);
+      }
+    }
+  });
+
+  console.log();
+}
+
+function handleDoctorOnboarding(options) {
+  console.log(`\n🩺 \x1b[36mRunning advisory onboarding doctor checkup in: ${options.target}\x1b[0m\n`);
+
+  let warnings = 0;
+  const warn = (msg) => {
+    console.warn(`  \x1b[33m[WARNING]\x1b[0m ${msg}`);
+    warnings++;
+  };
+
+  const crucialFiles = [
+    'AGENTS.md',
+    'MEMORY.md',
+    'TASKS.md',
+    'RUNBOOK.md'
+  ];
+
+  crucialFiles.forEach(f => {
+    if (!existsSync(join(options.target, f))) {
+      warn(`Crucial onboarding file '${f}' is missing from project root.`);
+    }
+  });
+
+  const configPath = join(options.target, '.ai', 'config.yaml');
+  if (!existsSync(configPath)) {
+    warn('MultiModel Dev OS configuration file (.ai/config.yaml) is missing.');
+  }
+
+  const registriesDir = join(options.target, '.ai', 'registries');
+  if (!existsSync(registriesDir)) {
+    warn('Registries directory (.ai/registries) is missing.');
+  }
+
+  const proposalsDir = join(options.target, '.ai', 'proposals');
+  if (!existsSync(proposalsDir)) {
+    warn('Proposals directory (.ai/proposals) is missing.');
+  }
+
+  const intelligenceDir = join(options.target, '.ai', 'intelligence');
+  if (!existsSync(intelligenceDir)) {
+    warn('Intelligence directory (.ai/intelligence) is missing.');
+  }
+
+  const gitignorePath = join(options.target, '.gitignore');
+  if (existsSync(gitignorePath)) {
+    const gitignoreContent = readFileSync(gitignorePath, 'utf8');
+    const checkIgnore = (pattern) => {
+      if (!gitignoreContent.includes(pattern)) {
+        warn(`Generated runtime file '${pattern}' is not ignored in .gitignore.`);
+      }
+    };
+    checkIgnore('onboarding.plan.json');
+    checkIgnore('onboarding.report.md');
+  }
+
+  const { files } = scanTarget(options.target);
+  const packageManagers = detectDependencySignals(files, options.target);
+  if (packageManagers.length === 0) {
+    warn('No package manager lockfile detected in project root.');
+  }
+
+  console.log('\n==================================================');
+  if (warnings > 0) {
+    console.log(`\x1b[33mDoctor onboarding check complete. Found ${warnings} warnings.\x1b[0m\n`);
+  } else {
+    console.log('\x1b[32m✔ Doctor onboarding check complete. Your workspace onboarding setup is pristine!\x1b[0m\n');
+  }
+}
+
+