mulch-cli 0.2.3 → 0.2.5

package/README.md

@@ -67,7 +67,7 @@ Everything is git-tracked. Clone a repo and your agents immediately have the pro
 | `mulch edit <domain> <id>` | Edit an existing record by ID or 1-based index |
 | `mulch delete <domain> <id>` | Delete a record by ID or 1-based index |
 | `mulch query [domain]` | Query expertise (use `--all` for all domains) |
-| `mulch prime [domains...]` | Output AI-optimized expertise context (multi-domain, `--context`, `--format`, `--export`) |
+| `mulch prime [domains...]` | Output AI-optimized expertise context (`--budget`, `--no-limit`, `--context`, `--format`, `--export`) |
 | `mulch search [query]` | Search records across domains (`--domain`, `--type`, `--tag` filters) |
 | `mulch compact [domain]` | Analyze compaction candidates or apply a compaction (`--analyze`, `--apply`) |
 | `mulch status` | Show expertise freshness and counts |
@@ -120,6 +120,58 @@ $ mulch query database
 - **Append-only JSONL** — Zero merge conflicts, trivial schema validation.
 - **Storage ≠ Delivery** — JSONL on disk, optimized markdown/XML for agents.
 
+## Concurrency & Multi-Agent Safety
+
+Mulch is designed for multi-agent workflows where several agents record expertise concurrently against the same repository.
+
+### How it works
+
+- **Advisory file locking** — Write commands acquire a `.lock` file (O_CREAT|O_EXCL) before modifying any JSONL file. Retries every 50ms for up to 5 seconds; stale locks (>30s) are auto-removed.
+- **Atomic writes** — All JSONL mutations write to a temp file first, then atomically rename into place. A crash mid-write never corrupts the expertise file.
+- **Git merge strategy** — `mulch init` sets `merge=union` in `.gitattributes` so parallel branches append-merge JSONL lines without conflicts.
+
+### Command safety
+
+| Safety level | Commands | Notes |
+|---|---|---|
+| **Fully safe** (read-only) | `prime`, `query`, `search`, `status`, `validate`, `learn`, `ready` | No file writes. Any number of agents, any time. |
+| **Safe** (locked writes) | `record`, `edit`, `delete`, `compact`, `prune`, `doctor` | Acquire per-file lock before writing. Multiple agents can target the same domain — the lock serializes access automatically. |
+| **Serialize** (setup ops) | `init`, `add`, `onboard`, `setup` | Modify config or external files (CLAUDE.md, git hooks). Run once during project setup, not during parallel agent work. |
+
+### Swarm patterns
+
+**Same-worktree agents** (e.g., Claude Code team, parallel CI jobs):
+
+```bash
+# Every agent can safely do this in parallel:
+mulch prime                                    # Read context
+mulch record api --type pattern --name "..." --description "..."  # Locked write
+mulch search "error handling"                  # Read-only
+```
+
+Locks ensure correctness automatically. If two agents record to the same domain at the same instant, one waits (up to 5s) for the other to finish.
+
+**Multi-worktree / branch-per-agent**:
+
+Each agent works in its own git worktree. On merge, `merge=union` combines all JSONL lines. Run `mulch doctor --fix` after merge to deduplicate if needed.
+
+**Maintenance during swarm work**:
+
+```bash
+mulch compact --analyze          # Safe: read-only scan
+mulch prune --dry-run            # Safe: read-only scan
+mulch doctor                     # Safe: read-only health check
+```
+
+The `--apply`, default (non-dry-run), and `--fix` variants acquire locks and are also safe to run alongside recording agents.
+
+### Edge cases
+
+- **Lock timeout**: If a lock cannot be acquired within 5 seconds, the command fails with an error. Retry or check for stuck processes.
+- **Stale locks**: Locks older than 30 seconds are automatically cleaned up (e.g., after a crash).
+- **`mulch sync`**: Uses git's own locking for commits. Multiple agents syncing on the same branch will contend on git's ref lock — coordinate sync timing or use per-agent branches.
+- **`prime --export`**: Multiple agents exporting to the same file path will race. Use unique filenames per agent.
+
 ## License
 
 MIT

package/dist/cli.js

@@ -23,7 +23,7 @@ const program = new Command();
 program
     .name("mulch")
     .description("Let your agents grow 🌱")
-    .version("0.2.3")
+    .version("0.2.5")
     .option("--json", "output as structured JSON");
 registerInitCommand(program);
 registerAddCommand(program);

package/dist/commands/compact.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"compact.d.ts","sourceRoot":"","sources":["../../src/commands/compact.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAsFpC,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA+C7D"}
+{"version":3,"file":"compact.d.ts","sourceRoot":"","sources":["../../src/commands/compact.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAuFpC,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA+C7D"}

package/dist/commands/compact.js

@@ -1,6 +1,7 @@
 import chalk from "chalk";
 import { readConfig, getExpertisePath } from "../utils/config.js";
 import { readExpertiseFile, writeExpertiseFile, generateRecordId, resolveRecordId, } from "../utils/expertise.js";
+import { withFileLock } from "../utils/lock.js";
 import { recordSchema } from "../schemas/record-schema.js";
 import { outputJson, outputJsonError } from "../utils/json-output.js";
 import { getRecordSummary } from "../utils/format.js";
@@ -163,129 +164,144 @@ async function handleApply(domain, options, jsonMode) {
         return;
     }
     const filePath = getExpertisePath(domain);
-    const records = await readExpertiseFile(filePath);
-    const identifiers = options.records.split(",").map((s) => s.trim()).filter(Boolean);
-    let indicesToRemove;
-    try {
-        indicesToRemove = resolveRecordIds(records, identifiers);
-    }
-    catch (err) {
-        const msg = err.message;
-        if (jsonMode) {
-            outputJsonError("compact", msg);
-        }
-        else {
-            console.error(chalk.red(`Error: ${msg}`));
-        }
-        process.exitCode = 1;
-        return;
-    }
-    if (indicesToRemove.length < 2) {
-        const msg = "Compaction requires at least 2 records.";
-        if (jsonMode) {
-            outputJsonError("compact", msg);
-        }
-        else {
-            console.error(chalk.red(`Error: ${msg}`));
+    await withFileLock(filePath, async () => {
+        const records = await readExpertiseFile(filePath);
+        const identifiers = options.records.split(",").map((s) => s.trim()).filter(Boolean);
+        let indicesToRemove;
+        try {
+            indicesToRemove = resolveRecordIds(records, identifiers);
         }
-        process.exitCode = 1;
-        return;
-    }
-    // Build replacement record
-    const recordType = options.type ?? records[indicesToRemove[0]].type;
-    const recordedAt = new Date().toISOString();
-    const compactedFrom = indicesToRemove.map((i) => records[i].id).filter(Boolean);
-    let replacement;
-    switch (recordType) {
-        case "convention": {
-            const content = options.content ?? options.description;
-            if (!content) {
-                const msg = "Replacement convention requires --content or --description.";
-                if (jsonMode) {
-                    outputJsonError("compact", msg);
-                }
-                else {
-                    console.error(chalk.red(`Error: ${msg}`));
-                }
-                process.exitCode = 1;
-                return;
+        catch (err) {
+            const msg = err.message;
+            if (jsonMode) {
+                outputJsonError("compact", msg);
             }
-            replacement = { type: "convention", content, classification: "foundational", recorded_at: recordedAt };
-            break;
+            else {
+                console.error(chalk.red(`Error: ${msg}`));
+            }
+            process.exitCode = 1;
+            return;
         }
-        case "pattern": {
-            const name = options.name;
-            const description = options.description;
-            if (!name || !description) {
-                const msg = "Replacement pattern requires --name and --description.";
-                if (jsonMode) {
-                    outputJsonError("compact", msg);
-                }
-                else {
-                    console.error(chalk.red(`Error: ${msg}`));
-                }
-                process.exitCode = 1;
-                return;
+        if (indicesToRemove.length < 2) {
+            const msg = "Compaction requires at least 2 records.";
+            if (jsonMode) {
+                outputJsonError("compact", msg);
             }
-            replacement = { type: "pattern", name, description, classification: "foundational", recorded_at: recordedAt };
-            break;
+            else {
+                console.error(chalk.red(`Error: ${msg}`));
+            }
+            process.exitCode = 1;
+            return;
         }
-        case "failure": {
-            const description = options.description;
-            const resolution = options.resolution;
-            if (!description || !resolution) {
-                const msg = "Replacement failure requires --description and --resolution.";
-                if (jsonMode) {
-                    outputJsonError("compact", msg);
+        // Build replacement record
+        const recordType = options.type ?? records[indicesToRemove[0]].type;
+        const recordedAt = new Date().toISOString();
+        const compactedFrom = indicesToRemove.map((i) => records[i].id).filter(Boolean);
+        let replacement;
+        switch (recordType) {
+            case "convention": {
+                const content = options.content ?? options.description;
+                if (!content) {
+                    const msg = "Replacement convention requires --content or --description.";
+                    if (jsonMode) {
+                        outputJsonError("compact", msg);
+                    }
+                    else {
+                        console.error(chalk.red(`Error: ${msg}`));
+                    }
+                    process.exitCode = 1;
+                    return;
                 }
-                else {
-                    console.error(chalk.red(`Error: ${msg}`));
+                replacement = { type: "convention", content, classification: "foundational", recorded_at: recordedAt };
+                break;
+            }
+            case "pattern": {
+                const name = options.name;
+                const description = options.description;
+                if (!name || !description) {
+                    const msg = "Replacement pattern requires --name and --description.";
+                    if (jsonMode) {
+                        outputJsonError("compact", msg);
+                    }
+                    else {
+                        console.error(chalk.red(`Error: ${msg}`));
+                    }
+                    process.exitCode = 1;
+                    return;
                 }
-                process.exitCode = 1;
-                return;
+                replacement = { type: "pattern", name, description, classification: "foundational", recorded_at: recordedAt };
+                break;
             }
-            replacement = { type: "failure", description, resolution, classification: "foundational", recorded_at: recordedAt };
-            break;
-        }
-        case "decision": {
-            const title = options.title;
-            const rationale = options.rationale;
-            if (!title || !rationale) {
-                const msg = "Replacement decision requires --title and --rationale.";
-                if (jsonMode) {
-                    outputJsonError("compact", msg);
+            case "failure": {
+                const description = options.description;
+                const resolution = options.resolution;
+                if (!description || !resolution) {
+                    const msg = "Replacement failure requires --description and --resolution.";
+                    if (jsonMode) {
+                        outputJsonError("compact", msg);
+                    }
+                    else {
+                        console.error(chalk.red(`Error: ${msg}`));
+                    }
+                    process.exitCode = 1;
+                    return;
                 }
-                else {
-                    console.error(chalk.red(`Error: ${msg}`));
+                replacement = { type: "failure", description, resolution, classification: "foundational", recorded_at: recordedAt };
+                break;
+            }
+            case "decision": {
+                const title = options.title;
+                const rationale = options.rationale;
+                if (!title || !rationale) {
+                    const msg = "Replacement decision requires --title and --rationale.";
+                    if (jsonMode) {
+                        outputJsonError("compact", msg);
+                    }
+                    else {
+                        console.error(chalk.red(`Error: ${msg}`));
+                    }
+                    process.exitCode = 1;
+                    return;
                 }
-                process.exitCode = 1;
-                return;
+                replacement = { type: "decision", title, rationale, classification: "foundational", recorded_at: recordedAt };
+                break;
             }
-            replacement = { type: "decision", title, rationale, classification: "foundational", recorded_at: recordedAt };
-            break;
-        }
-        case "reference": {
-            const name = options.name;
-            const description = options.description;
-            if (!name || !description) {
-                const msg = "Replacement reference requires --name and --description.";
-                if (jsonMode) {
-                    outputJsonError("compact", msg);
+            case "reference": {
+                const name = options.name;
+                const description = options.description;
+                if (!name || !description) {
+                    const msg = "Replacement reference requires --name and --description.";
+                    if (jsonMode) {
+                        outputJsonError("compact", msg);
+                    }
+                    else {
+                        console.error(chalk.red(`Error: ${msg}`));
+                    }
+                    process.exitCode = 1;
+                    return;
                 }
-                else {
-                    console.error(chalk.red(`Error: ${msg}`));
+                replacement = { type: "reference", name, description, classification: "foundational", recorded_at: recordedAt };
+                break;
+            }
+            case "guide": {
+                const name = options.name;
+                const description = options.description;
+                if (!name || !description) {
+                    const msg = "Replacement guide requires --name and --description.";
+                    if (jsonMode) {
+                        outputJsonError("compact", msg);
+                    }
+                    else {
+                        console.error(chalk.red(`Error: ${msg}`));
+                    }
+                    process.exitCode = 1;
+                    return;
                 }
-                process.exitCode = 1;
-                return;
+                replacement = { type: "guide", name, description, classification: "foundational", recorded_at: recordedAt };
+                break;
             }
-            replacement = { type: "reference", name, description, classification: "foundational", recorded_at: recordedAt };
-            break;
-        }
-        case "guide": {
-            const name = options.name;
-            const description = options.description;
-            if (!name || !description) {
-                const msg = "Replacement guide requires --name and --description.";
+            default: {
+                const msg = `Unknown record type "${recordType}".`;
                 if (jsonMode) {
                     outputJsonError("compact", msg);
                 }
@@ -295,11 +311,18 @@ async function handleApply(domain, options, jsonMode) {
                 process.exitCode = 1;
                 return;
             }
-            replacement = { type: "guide", name, description, classification: "foundational", recorded_at: recordedAt };
-            break;
         }
-        default: {
-            const msg = `Unknown record type "${recordType}".`;
+        // Add supersedes links to the compacted-from records
+        if (compactedFrom.length > 0) {
+            replacement.supersedes = compactedFrom;
+        }
+        // Validate replacement
+        const ajv = new Ajv();
+        const validate = ajv.compile(recordSchema);
+        replacement.id = generateRecordId(replacement);
+        if (!validate(replacement)) {
+            const errors = (validate.errors ?? []).map((err) => `${err.instancePath} ${err.message}`);
+            const msg = `Replacement record failed validation: ${errors.join("; ")}`;
             if (jsonMode) {
                 outputJsonError("compact", msg);
             }
@@ -309,44 +332,24 @@ async function handleApply(domain, options, jsonMode) {
             process.exitCode = 1;
             return;
         }
-    }
-    // Add supersedes links to the compacted-from records
-    if (compactedFrom.length > 0) {
-        replacement.supersedes = compactedFrom;
-    }
-    // Validate replacement
-    const ajv = new Ajv();
-    const validate = ajv.compile(recordSchema);
-    replacement.id = generateRecordId(replacement);
-    if (!validate(replacement)) {
-        const errors = (validate.errors ?? []).map((err) => `${err.instancePath} ${err.message}`);
-        const msg = `Replacement record failed validation: ${errors.join("; ")}`;
+        // Remove old records and append replacement
+        const removeSet = new Set(indicesToRemove);
+        const remaining = records.filter((_, i) => !removeSet.has(i));
+        remaining.push(replacement);
+        await writeExpertiseFile(filePath, remaining);
         if (jsonMode) {
-            outputJsonError("compact", msg);
+            outputJson({
+                success: true,
+                command: "compact",
+                action: "applied",
+                domain,
+                removed: indicesToRemove.length,
+                replacement,
+            });
         }
         else {
-            console.error(chalk.red(`Error: ${msg}`));
+            console.log(chalk.green(`\u2714 Compacted ${indicesToRemove.length} ${recordType} records into 1 in ${domain}`));
         }
-        process.exitCode = 1;
-        return;
-    }
-    // Remove old records and append replacement
-    const removeSet = new Set(indicesToRemove);
-    const remaining = records.filter((_, i) => !removeSet.has(i));
-    remaining.push(replacement);
-    await writeExpertiseFile(filePath, remaining);
-    if (jsonMode) {
-        outputJson({
-            success: true,
-            command: "compact",
-            action: "applied",
-            domain,
-            removed: indicesToRemove.length,
-            replacement,
-        });
-    }
-    else {
-        console.log(chalk.green(`\u2714 Compacted ${indicesToRemove.length} ${recordType} records into 1 in ${domain}`));
-    }
+    });
 }
 //# sourceMappingURL=compact.js.map

package/dist/commands/compact.js.map

@@ -1 +1 @@
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package/dist/commands/delete.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"delete.d.ts","sourceRoot":"","sources":["../../src/commands/delete.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAWpC,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAoF5D"}
+{"version":3,"file":"delete.d.ts","sourceRoot":"","sources":["../../src/commands/delete.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAYpC,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAsF5D"}

package/dist/commands/delete.js

@@ -1,6 +1,7 @@
 import chalk from "chalk";
 import { readConfig, getExpertisePath } from "../utils/config.js";
 import { readExpertiseFile, writeExpertiseFile, resolveRecordId, } from "../utils/expertise.js";
+import { withFileLock } from "../utils/lock.js";
 import { getRecordSummary } from "../utils/format.js";
 import { outputJson, outputJsonError } from "../utils/json-output.js";
 export function registerDeleteCommand(program) {
@@ -25,35 +26,37 @@ export function registerDeleteCommand(program) {
                 return;
             }
             const filePath = getExpertisePath(domain);
-            const records = await readExpertiseFile(filePath);
-            const resolved = resolveRecordId(records, id);
-            if (!resolved.ok) {
+            await withFileLock(filePath, async () => {
+                const records = await readExpertiseFile(filePath);
+                const resolved = resolveRecordId(records, id);
+                if (!resolved.ok) {
+                    if (jsonMode) {
+                        outputJsonError("delete", resolved.error);
+                    }
+                    else {
+                        console.error(chalk.red(`Error: ${resolved.error}`));
+                    }
+                    process.exitCode = 1;
+                    return;
+                }
+                const targetIndex = resolved.index;
+                const deleted = records[targetIndex];
+                records.splice(targetIndex, 1);
+                await writeExpertiseFile(filePath, records);
                 if (jsonMode) {
-                    outputJsonError("delete", resolved.error);
+                    outputJson({
+                        success: true,
+                        command: "delete",
+                        domain,
+                        id: deleted.id ?? null,
+                        type: deleted.type,
+                        summary: getRecordSummary(deleted),
+                    });
                 }
                 else {
-                    console.error(chalk.red(`Error: ${resolved.error}`));
+                    console.log(chalk.green(`✔ Deleted ${deleted.type} ${deleted.id ?? ""} from ${domain}: ${getRecordSummary(deleted)}`));
                 }
-                process.exitCode = 1;
-                return;
-            }
-            const targetIndex = resolved.index;
-            const deleted = records[targetIndex];
-            records.splice(targetIndex, 1);
-            await writeExpertiseFile(filePath, records);
-            if (jsonMode) {
-                outputJson({
-                    success: true,
-                    command: "delete",
-                    domain,
-                    id: deleted.id ?? null,
-                    type: deleted.type,
-                    summary: getRecordSummary(deleted),
-                });
-            }
-            else {
-                console.log(chalk.green(`✔ Deleted ${deleted.type} ${deleted.id ?? ""} from ${domain}: ${getRecordSummary(deleted)}`));
-            }
+            });
         }
         catch (err) {
             if (err.code === "ENOENT") {

package/dist/commands/delete.js.map

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package/dist/commands/doctor.d.ts.map

@@ -1 +1 @@
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