msa-parsers 5.0.7 → 5.0.13

package/dist/src/types.d.ts

@@ -1,66 +0,0 @@
-export interface Node {
-    children?: Node[];
-    name?: string;
-    length?: number;
-}
-export interface NodeWithIds {
-    id: string;
-    name: string;
-    children: NodeWithIds[];
-    length?: number;
-    noTree?: boolean;
-}
-export interface NodeWithIdsAndLength {
-    id: string;
-    name: string;
-    children: NodeWithIdsAndLength[];
-    noTree?: boolean;
-    length: number;
-}
-export interface GFFRecord {
-    seq_id: string;
-    source: string;
-    type: string;
-    start: number;
-    end: number;
-    score: number;
-    strand: string;
-    phase: string;
-    [key: string]: string | number;
-}
-export interface InterProScanMatch {
-    signature: {
-        entry?: {
-            name: string;
-            description: string;
-            accession: string;
-        };
-    };
-    locations: {
-        start: number;
-        end: number;
-    }[];
-}
-export interface InterProScanResults {
-    matches: InterProScanMatch[];
-    xref: {
-        id: string;
-    }[];
-}
-export interface InterProScanResponse {
-    results: InterProScanResults[];
-}
-export interface MSAParser {
-    getMSA(): unknown;
-    getRow(name: string): string;
-    getWidth(): number;
-    getNames(): string[];
-    getTree(): NodeWithIds;
-    getHeader(): unknown;
-    getRowData(name: string): unknown;
-    getStructures(): Record<string, unknown>;
-    alignmentNames: string[];
-    seqConsensus: string | undefined;
-    secondaryStructureConsensus: string | undefined;
-    tracks: unknown[];
-}

package/dist/src/types.js

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=types.js.map

package/dist/src/types.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/types.ts"],"names":[],"mappings":""}

package/dist/src/util.d.ts

@@ -1,2 +0,0 @@
-import type { Node, NodeWithIds } from './types.ts';
-export declare function generateNodeIds(tree: Node, parent?: string, depth?: number): NodeWithIds;

package/dist/src/util.js

@@ -1,10 +0,0 @@
-export function generateNodeIds(tree, parent = 'node', depth = 0) {
-    const id = `${parent}-${depth}`;
-    return {
-        ...tree,
-        id,
-        name: tree.name || id,
-        children: tree.children?.map((b, i) => generateNodeIds(b, `${id}-${i}`, depth + 1)) || [],
-    };
-}
-//# sourceMappingURL=util.js.map

package/dist/src/util.js.map

@@ -1 +0,0 @@
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