mossbear 0.1.0-alpha.36 → 0.1.0-alpha.39

package/README.md

@@ -10,6 +10,8 @@ The CLI is the on-device half of the product: it hooks into your agent's lifecyc
 npm install -g mossbear
 ```
 
+There is no stable release yet: this installs an alpha, and breaking changes can land on it without a deprecation window.
+
 A global install is required (not just `npx`). The hooks `mossbear init` registers run from your agent's session by name — `mossbear-hook` on every tool call, `mossbear sync` at the end of each turn and of the session — so both binaries must be on `PATH`. Node 20+ required.
 
 ## Staying up to date

package/dist/commands/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":"AA8DA,eAAO,MAAM,aAAa;;;;;;;;;;;;EA+XxB,CAAA"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":"AA6DA,eAAO,MAAM,aAAa;;;;;;;;;;;;EAyaxB,CAAA"}

package/dist/commands/doctor.js

@@ -4,8 +4,7 @@ import { describeDashboardHealth } from '../dashboard-health.js';
 import { describeGuideDelivery } from '../docs/delivery-check.js';
 import { classifyUnresolvedSubscription, repoBundleIds, unresolvedSubscriptionMessage, } from '../docs/delivery.js';
 import { collidesWithHomeConfig, readRepoDocsConfig } from '../docs/repo-config.js';
-import { CODEX_TRUST_NOTE } from '../harness-writers.js';
-import { harnessDefinition } from '../harnesses.js';
+import { CODEX_TRUST_NOTE, harnessDefinition, loggerCommand } from '../harnesses.js';
 import { MOSSBEAR_HOOK_COMMAND, MOSSBEAR_SYNC_COMMAND, sessionStartHookAlreadyPulls, sessionStartHookUpdatesCli, sessionStartHookBootstraps, stopHookUploadsActions, } from '../hooks-settings.js';
 import { createContextClient } from '../mcp/client.js';
 import { resolveOnPath } from '../path-resolve.js';
@@ -60,19 +59,56 @@ export const doctorCommand = defineCommand({
         const wiredHarnesses = harnessWiring.filter((harness) => harness.logsActions);
         const codexWired = wiredHarnesses.some((harness) => harness.id === 'codex');
         // Names the event per harness rather than just the file, because the event
-        // is the thing that differs between them — `PostToolUse`, `AfterTool` and
-        // `post_tool_use` are the same hook under three names — and it is what a
-        // user checks their own config against. The sibling checks below are
+        // is the thing that differs between them — Claude Code's `PostToolUse` and
+        // Codex's `post_tool_use` are the same hook under two names — and it is
+        // what a user checks their own config against. The sibling checks below are
         // Claude Code's alone and keep their own wording.
         const wiredHarnessDetail = wiredHarnesses
             .map((harness) => {
-            const definition = harnessDefinition(harness.id);
-            return `${definition.label} — ${definition.projectConfig} ${definition.loggerEvent} hook (${MOSSBEAR_HOOK_COMMAND})`;
+            const manifest = harnessDefinition(harness.id);
+            const outbound = manifest.outbound;
+            const detail = outbound
+                ? `${outbound.projectConfig} ${outbound.events.logger} hook (${loggerCommand(manifest)})`
+                : `${MOSSBEAR_HOOK_COMMAND} hook`;
+            // An entry that logs but names no field map is reported as the problem
+            // it is, not folded into the wired list: `mossbear-hook` would read
+            // this harness's payload with Claude Code's field names, resolve
+            // nothing, and log every session under `'unknown'` — one merged run
+            // per machine, graded as if it meant something.
+            const suffix = harness.fieldMapOk
+                ? ''
+                : ` — missing \`--harness ${manifest.id}\`, so its payload reads as empty; re-run \`mossbear init\``;
+            return `${manifest.label} — ${detail}${suffix}`;
         })
             .join('; ');
         const hooksConfigured = wiredHarnesses.length > 0;
+        // Claude Code's alone, and gated on Claude Code being wired rather than on
+        // *any* harness. `PostToolUseFailure` is a Claude Code event — no other
+        // harness has one — so in an Antigravity- or Codex-only repo this check was
+        // reporting a hook that cannot exist as missing, failing `doctor` with a
+        // remedy ("run `mossbear init` to add it") that could only be satisfied by
+        // wiring a different harness than the one the repo uses.
+        const claudeCodeWired = wiredHarnesses.some((harness) => harness.id === 'claude_code');
         const failureHookConfigured = detectLoggerHook(projectHooks, 'PostToolUseFailure') !== null;
-        const uploadConfigured = detectUploadHook(projectHooks);
+        // The upload question is every harness's, so it is answered from every
+        // wired harness's own config rather than from `.claude/settings.json`.
+        // Reading only Claude Code's file told an Antigravity repo its actions were
+        // never uploaded while its `.agents/hooks.json` Stop hook was uploading
+        // them — a false red on the exact state `mossbear init --platform
+        // antigravity` produces.
+        const uploadConfigured = detectUploadHook(projectHooks) ||
+            wiredHarnesses.some((harness) => harness.uploadsRun);
+        // Named per harness so the reader can open the file the check just read.
+        // Claude Code is listed through `detectUploadHook` rather than its wiring
+        // row because that reader knows about `--no-actions`/`--dry-run` Stop
+        // hooks, which mention `mossbear sync` and upload nothing.
+        const uploadingConfigs = [
+            ...(detectUploadHook(projectHooks) ? ['.claude/settings.json'] : []),
+            ...wiredHarnesses
+                .filter((harness) => harness.uploadsRun && harness.id !== 'claude_code')
+                .map((harness) => harnessDefinition(harness.id).outbound?.projectConfig)
+                .filter((path) => path !== undefined),
+        ];
         // Reported rather than checked — see `describeSessionStart`. This hook is
         // the one `mossbear init` lets a user decline, and its absence is
         // indistinguishable from having declined it.
@@ -206,7 +242,7 @@ export const doctorCommand = defineCommand({
                 // inert case reported as healthy.
                 //
                 // Passes on *any* wired harness, not on Claude Code specifically: a
-                // Gemini-only repo is correctly set up, and failing it here would be
+                // Codex-only repo is correctly set up, and failing it here would be
                 // the check telling a working repo it is broken. Which harnesses those
                 // are is the detail line's job.
                 ok: hooksConfigured && runnerOk,
@@ -219,7 +255,7 @@ export const doctorCommand = defineCommand({
             // Only meaningful once the logger is wired: with no PostToolUse hook
             // there is nothing to upload, and the check above already says so. Two
             // failures for one cause would just make the output harder to act on.
-            ...(hooksConfigured
+            ...(claudeCodeWired
                 ? [
                     {
                         // PostToolUse fires only after a tool call succeeds; a failing
@@ -237,6 +273,10 @@ export const doctorCommand = defineCommand({
                                 ? `.claude/settings.json has PostToolUseFailure hook (${MOSSBEAR_HOOK_COMMAND})`
                                 : `${MOSSBEAR_HOOK_COMMAND} not on PATH — reinstall globally (npm install -g mossbear)`,
                     },
+                ]
+                : []),
+            ...(hooksConfigured
+                ? [
                     {
                         label: 'Session uploads to the dashboard',
                         // Configured is not the same as able to run. The runner check
@@ -246,10 +286,10 @@ export const doctorCommand = defineCommand({
                         // case `missingHookPathWarning` already covers for init.
                         ok: uploadConfigured && mossbearBinPath !== null,
                         detail: !uploadConfigured
-                            ? `actions are being logged to ~/.mossbear/runs/ and never uploaded — run \`mossbear init\` to add the \`${MOSSBEAR_SYNC_COMMAND}\` Stop hook. If you upload some other way, this check will keep reporting.`
+                            ? `actions are being logged to ~/.mossbear/runs/ and never uploaded — run \`mossbear init\` to add the \`${MOSSBEAR_SYNC_COMMAND}\` Stop hook to ${wiredHarnesses.map((harness) => harnessDefinition(harness.id).label).join(', ')}. If you upload some other way, this check will keep reporting.`
                             : mossbearBinPath === null
                                 ? '`mossbear` is not on PATH, so the configured Stop hook fails with command-not-found and nothing uploads — reinstall globally (npm install -g mossbear)'
-                                : `.claude/settings.json has Stop hook (${MOSSBEAR_SYNC_COMMAND})`,
+                                : `${uploadingConfigs.join(', ')} has a Stop hook (${MOSSBEAR_SYNC_COMMAND})`,
                     },
                 ]
                 : []),

package/dist/commands/doctor.js.map

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package/dist/commands/guides/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/guides/index.ts"],"names":[],"mappings":"AAEA,eAAO,MAAM,aAAa,qDAwBxB,CAAA"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/guides/index.ts"],"names":[],"mappings":"AAEA,eAAO,MAAM,aAAa,qDA6BxB,CAAA"}

package/dist/commands/guides/index.js

@@ -15,7 +15,12 @@ export const guidesCommand = defineCommand({
         // now, so a repo receives guides by subscribing to the bundles they are in
         // and the docs phase materializes them (`unified-item-sync-plan.md` → Slice
         // 5, goal criterion 5). `mossbear pull <bundle>` is the deliberate one-shot.
-        project: () => import('./project.js').then((m) => m.guidesProjectCommand),
+        //
+        // No `project`. It rendered AGENTS.md and `.agents/` from hand-written
+        // agent-config JSON under `.mossbear/`, a third writer of AGENTS.md
+        // alongside `mossbear init` and the docs phase, and nothing in the product
+        // has produced that JSON since guides became the unit of guidance
+        // (`guidance-delivery-and-alias-review.md` → Decision 6).
         active: () => import('./active.js').then((m) => m.guidesActiveCommand),
         search: () => import('./search.js').then((m) => m.guidesSearchCommand),
         // The one verb here that reaches the network. `active` and `search` read the

package/dist/commands/guides/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/guides/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,aAAa,EAAE,MAAM,OAAO,CAAA;AAErC,MAAM,CAAC,MAAM,aAAa,GAAG,aAAa,CAAC;IACzC,IAAI,EAAE;QACJ,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,oCAAoC;KAClD;IACD,WAAW,EAAE;QACX,6EAA6E;QAC7E,uEAAuE;QACvE,yEAAyE;QACzE,uDAAuD;QACvD,EAAE;QACF,2EAA2E;QAC3E,6EAA6E;QAC7E,2EAA2E;QAC3E,4EAA4E;QAC5E,6EAA6E;QAC7E,OAAO,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,oBAAoB,CAAC;QACzE,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,mBAAmB,CAAC;QACtE,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,mBAAmB,CAAC;QACtE,6EAA6E;QAC7E,4EAA4E;QAC5E,sDAAsD;QACtD,OAAO,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,oBAAoB,CAAC;KAC1E;CACF,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/guides/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,aAAa,EAAE,MAAM,OAAO,CAAA;AAErC,MAAM,CAAC,MAAM,aAAa,GAAG,aAAa,CAAC;IACzC,IAAI,EAAE;QACJ,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,oCAAoC;KAClD;IACD,WAAW,EAAE;QACX,6EAA6E;QAC7E,uEAAuE;QACvE,yEAAyE;QACzE,uDAAuD;QACvD,EAAE;QACF,2EAA2E;QAC3E,6EAA6E;QAC7E,2EAA2E;QAC3E,4EAA4E;QAC5E,6EAA6E;QAC7E,EAAE;QACF,uEAAuE;QACvE,oEAAoE;QACpE,2EAA2E;QAC3E,kEAAkE;QAClE,0DAA0D;QAC1D,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,mBAAmB,CAAC;QACtE,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,mBAAmB,CAAC;QACtE,6EAA6E;QAC7E,4EAA4E;QAC5E,sDAAsD;QACtD,OAAO,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,oBAAoB,CAAC;KAC1E;CACF,CAAC,CAAA"}

package/dist/commands/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAkOA,eAAO,MAAM,kBAAkB,+JAM9B,CAAA;AAED,eAAO,MAAM,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAw6CtB,CAAA"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAkPA,eAAO,MAAM,kBAAkB,+JAM9B,CAAA;AA+ED,eAAO,MAAM,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA28CtB,CAAA"}

package/dist/commands/init.js

@@ -7,13 +7,14 @@ import { defineCommand } from 'citty';
 import { MOSSBEAR_CONFIG_MODE, DEFAULT_DASHBOARD_URL, MOSSBEAR_DASHBOARD_URL_ENV, ensureMossbearDir, normalizeDashboardUrl, readConfigDashboardUrl, readEnvDashboardUrl, readConfigDiscoverGlobal, removeConfigEvalSection, resolveDashboardUrl, resolveToken, writeConfigDashboardUrl, writeConfigDiscoverGlobal, writeConfigToken, readGlobalDeliveryConsent, writeGlobalDeliveryConsent, } from '../config.js';
 import { deliveryBundles, legacySubscribedSlugs, legacySubscriptionMessage, repoBundleIds, } from '../docs/delivery.js';
 import { globalSkillsRoot, namespaceDir } from '../docs/global-namespace.js';
-import { readRepoDocsConfig, readRepoProjectId } from '../docs/repo-config.js';
+import { readRepoDocsConfig, readRepoProjectId, readRepoWorkspaceId, writeRepoWorkspaceId, } from '../docs/repo-config.js';
 import { resolveInitSubscriptionSelection, subscribeBundleSelections, } from '../docs/subscribe.js';
 import { formatDocsSyncLine, syncSubscribedDocs } from '../docs/sync-docs.js';
+import { resolveWorkspaceDeclarationSelection, shareableWorkspaces, } from '../docs/workspace-declaration.js';
 import { errText } from '../err-text.js';
-import { detectHarnesses, harnessDefinition, parsePlatformFlag, resolveHarnessSelection, } from '../harnesses.js';
+import { detectHarnesses, harnessDefinition, harnessOffers, loggerCommand, parseHarnessSelection, parsePlatformFlag, resolveHarnessSelection, } from '../harnesses.js';
 import { MOSSBEAR_HOOK_COMMAND, MOSSBEAR_SESSION_END_COMMAND, MOSSBEAR_SESSION_START_COMMAND, MOSSBEAR_SYNC_COMMAND, hookGroupsHaveCommand, mergeMossbearHookEntry, mergeMossbearLoggerHook, missingHookPathWarning, pruneStaleHooks, sessionStartHookAlreadyPulls, staleHookWarning, legacyFreshnessHookNote, supersededSessionStartWarning, SUPERSEDED_SESSION_START_COMMANDS, stopHookUploadsActions, } from '../hooks-settings.js';
-import { CODEX_TRUST_NOTE, wireCodex, wireGeminiCli } from '../init/wire-harnesses.js';
+import { wireHarness } from '../init/wire-harnesses.js';
 import { createContextClient } from '../mcp/client.js';
 import { MOSSBEAR_CONFIG, MOSSBEAR_GLOBAL_DIR, MOSSBEAR_HOME, MOSSBEAR_RUNS_DIR, } from '../mossbear-paths.js';
 import { resolveOnPath } from '../path-resolve.js';
@@ -168,6 +169,72 @@ export const AGENTS_MD_TEMPLATE = `# AGENTS.md
 <!-- Add rules below. Adopt them with \`${ADOPT_VERB}\` and the dashboard
      grades each session's actions against them. -->
 `;
+/**
+ * Ask which workspace this repo's guidance belongs to, and commit the answer.
+ *
+ * **Attended only, and asked only when it is a real question.** An account with
+ * no shared workspace has nothing to pick, and a repo that already declares one
+ * is not re-asked — re-prompting would invite someone to change a committed
+ * value they did not come here to change, and a bare Enter would then read as
+ * "leave it", which is not what the empty answer means anywhere else.
+ *
+ * Nothing here is fatal. The declaration narrows import resolution; without it
+ * imports resolve exactly as they did before this existed, so a failed listing
+ * or a failed write costs the repo convergence, not correctness.
+ */
+async function offerWorkspaceDeclaration(client, cwd) {
+    let declared;
+    try {
+        declared = (await readRepoWorkspaceId(cwd)).workspaceId;
+    }
+    catch {
+        // Unreadable committed config — the bundle pick below reports that state on
+        // its own terms; there is nothing this step can add.
+        return;
+    }
+    if (declared !== null)
+        return;
+    let offered;
+    try {
+        offered = shareableWorkspaces((await client.listWorkspaces()).workspaces);
+    }
+    catch (err) {
+        console.warn(`  warning: could not list your workspaces — ${errText(err)}. This repo's guidance stays in your personal workspace.`);
+        return;
+    }
+    if (offered.length === 0)
+        return;
+    console.log('\nWhich workspace does this repo\u2019s guidance belong to?');
+    console.log('Everyone in it shares one guide per file, instead of each keeping their own copy.');
+    offered.forEach((workspace, index) => {
+        console.log(`  ${index + 1}. ${workspace.name} [${workspace.slug}]`);
+    });
+    const rl = createInterface({ input: process.stdin, output: process.stdout });
+    let answer = '';
+    try {
+        answer = await rl.question('Number or slug [enter = keep it personal]: ');
+    }
+    finally {
+        rl.close();
+    }
+    const selection = resolveWorkspaceDeclarationSelection(answer, offered);
+    if (selection.kind === 'unrecognized') {
+        console.log(`  No workspace here is called \u201c${selection.input}\u201d, so nothing was declared. Run \`mossbear init\` again to pick one.`);
+        return;
+    }
+    if (selection.kind === 'none')
+        return;
+    try {
+        const { removedToken } = await writeRepoWorkspaceId(cwd, selection.workspace.id);
+        console.log(`  This repo\u2019s guidance belongs to ${selection.workspace.name} — commit .mossbear/config.json so teammates import into the same workspace`);
+        if (removedToken) {
+            console.warn('  warning: removed an API token from .mossbear/config.json — rotate it if that file was ever committed.');
+        }
+    }
+    catch (err) {
+        console.warn(`  warning: could not record the workspace — ${errText(err)}`);
+    }
+}
 export const initCommand = defineCommand({
     meta: {
         name: 'init',
@@ -211,7 +278,7 @@ export const initCommand = defineCommand({
         },
         platform: {
             type: 'string',
-            description: 'Comma-separated harnesses to wire, overriding detection: claude_code, gemini_cli, codex. Required when there is no TTY and the repo has no harness config to detect',
+            description: 'Comma-separated harnesses to wire, overriding detection: claude_code, codex. Required when there is no TTY and the repo has no harness config to detect',
             valueHint: 'list',
             default: '',
         },
@@ -287,7 +354,7 @@ export const initCommand = defineCommand({
         // No eval-provider block: grading runs on the server against what `mossbear
         // sync` uploads, so nothing here needs an LLM key.
         // No `platform` field. It was written unconditionally as the string
-        // `'claude_code'`, so the moment `init` wires a Gemini-only repo it would
+        // `'claude_code'`, so the moment `init` wires a Codex-only repo it would
         // name a harness that repo does not use — and a second copy of a fact the
         // hook files already hold is the dual-write CLAUDE.md's Simplicity section
         // names. `mossbear status` and `doctor` read the config files instead
@@ -501,17 +568,46 @@ export const initCommand = defineCommand({
         const resolution = resolveHarnessSelection({ detected, requested, interactive });
         let wiring = resolution.ids;
         if (resolution.confirm) {
-            // Asked once for the whole set rather than once per harness: the question
-            // is "is this the right list", and three prompts would be three chances
-            // to answer a question the user did not come here to think about.
-            const labels = wiring.map((id) => harnessDefinition(id).label).join(', ');
-            const answer = await askLine(`\nWire Mossbear into ${labels}? [Y/n]: `);
-            const trimmed = answer.trim().toLowerCase();
-            // Default yes, unlike `confirmYesNo`: the user ran `init` to be set up,
-            // and this offer names what detection already found in their repo.
-            if (trimmed === 'n' || trimmed === 'no') {
+            // One numbered list, answered with one line, rather than a yes/no over
+            // the whole set. The yes/no could not express "wire Codex but not that
+            // other thing", and had nothing to say about a harness detection found
+            // and `init` cannot write. A numbered list also keeps the interaction
+            // inside `askLine` — `prompt.ts` has no multi-select primitive, and a
+            // raw-mode one would be untestable — and reads the same under `NO_COLOR`
+            // and in a pipe, where position carries the structure.
+            const offers = harnessOffers(resolution);
+            const width = Math.max(...offers.map((offer) => offer.label.length));
+            let printedMachineHeading = false;
+            console.log('\nDetected in this repo:');
+            offers.forEach((offer, index) => {
+                if (!offer.inRepo && !printedMachineHeading) {
+                    console.log('Also installed on this machine:');
+                    printedMachineHeading = true;
+                }
+                // A wireable row names the file it will write; a prompt-only row says
+                // there is nothing to write, because naming a path there would promise
+                // a file this run cannot produce.
+                const detail = offer.path
+                    ? `→ ${offer.path}`
+                    : '  prompt-only — nothing to write yet';
+                console.log(`  ${index + 1}. ${offer.label.padEnd(width)}  ${detail}`);
+            });
+            const preselected = offers
+                .map((offer, index) => (offer.preselected ? String(index + 1) : null))
+                .filter((label) => label !== null);
+            const answer = await askLine(`\nWire which? [${preselected.join(',')}] (Enter to accept, \`none\` to skip): `);
+            const selection = parseHarnessSelection(answer, offers);
+            if (!selection.ok) {
+                // Refused rather than reinterpreted: a user who typed `5` and silently
+                // got the default wired would have no way to tell that from having
+                // typed it correctly.
+                console.error(`  ${selection.message}`);
+                process.exitCode = 1;
+                return;
+            }
+            wiring = selection.ids;
+            if (wiring.length === 0) {
                 console.log('  skipped hook setup — `mossbear init --platform <harness>` to wire one');
-                wiring = [];
             }
         }
         const wireClaudeCode = wiring.includes('claude_code');
@@ -525,8 +621,8 @@ export const initCommand = defineCommand({
          * **Two lists rather than one boolean**, because "no hooks were installed"
          * and "Claude Code's hooks were not installed" are different sentences and
          * the second one is often the true one: the harness loop below is not gated
-         * on Claude Code succeeding, so a repo using Gemini as well still gets its
-         * Gemini hooks when `.claude/settings.json` is corrupt. Claiming *nothing*
+         * on Claude Code succeeding, so a repo using Codex as well still gets its
+         * Codex hooks when `.claude/settings.json` is corrupt. Claiming *nothing*
          * will be recorded there is false, and it is false in the command's final
          * verdict, which is the worst place to be wrong.
          *
@@ -545,7 +641,7 @@ export const initCommand = defineCommand({
             // Bare command, resolved through PATH from the `mossbear-hook` bin. Nothing
             // machine-specific, so this file is identical everywhere and safe to
             // commit.
-            command: MOSSBEAR_HOOK_COMMAND,
+            command: loggerCommand(harnessDefinition('claude_code')),
             timeout: 5,
         };
         try {
@@ -911,20 +1007,12 @@ export const initCommand = defineCommand({
             if (id === 'claude_code')
                 continue;
             try {
-                // The same opt-out flags that gate Claude Code's optional entries.
-                // `--no-session-start-hook` in particular is consent, not preference —
-                // the entry it declines installs the current release before the first
-                // turn in rebuilt environments — and Gemini's SessionStart entry runs
-                // the identical command, so a flag that stopped applying when the
-                // harness changed would be consent silently withdrawn.
-                const optIns = {
-                    sessionStart: args['session-start-hook'] !== false,
-                    sessionEnd: args['session-end-hook'] !== false,
-                    sync: args['sync-hook'] !== false,
-                };
-                const written = id === 'gemini_cli'
-                    ? await wireGeminiCli(cwd, optIns)
-                    : await wireCodex(cwd, optIns);
+                // The same opt-out flag that gates Claude Code's Stop entry. Codex
+                // has no session-scoped event, so `--no-session-start-hook` and
+                // `--no-session-end-hook` have nothing to decline here and are not
+                // passed on — see `HookOptIns` in `init/wire-harnesses.ts`.
+                const optIns = { sync: args['sync-hook'] !== false };
+                const written = await wireHarness(cwd, harnessDefinition(id), optIns);
                 if (written.unreadable) {
                     console.warn(`  ${written.unreadable}`);
                     hookWiringFailedFor.push(harnessDefinition(id).label);
@@ -935,9 +1023,12 @@ export const initCommand = defineCommand({
                     console.log(note(`${written.installed.length} hook${written.installed.length === 1 ? '' : 's'}: ${written.installed.join(', ')}`));
                     // Printed on the run that writes the file, for the same reason the
                     // SessionStart consent notice is: it names a step the user still owes,
-                    // and `doctor` reporting it later is a worse place to learn it.
-                    if (id === 'codex')
-                        console.log(note(CODEX_TRUST_NOTE));
+                    // and `doctor` reporting it later is a worse place to learn it. Read
+                    // off the manifest rather than branched on the id, so a harness with
+                    // its own outstanding step says so without an edit here.
+                    const writeNote = harnessDefinition(id).outbound?.writeNote;
+                    if (writeNote)
+                        console.log(note(writeNote));
                 }
                 if (written.present.length > 0) {
                     console.log(`  kept ${written.present.join(', ')} in ${written.path}`);
@@ -948,7 +1039,7 @@ export const initCommand = defineCommand({
                 }
             }
             catch {
-                console.warn(`  warning: could not update ${harnessDefinition(id).projectConfig}`);
+                console.warn(`  warning: could not update ${harnessDefinition(id).outbound?.projectConfig ?? id}`);
                 // Same reasoning as the Claude Code catch above: a harness this run set
                 // out to wire and could not is a failed setup, whichever harness it is.
                 hookWiringFailedFor.push(harnessDefinition(id).label);
@@ -1015,6 +1106,13 @@ export const initCommand = defineCommand({
             const dashboardUrl = await resolveDashboardUrl(args['dashboard-url']);
             try {
                 const client = createContextClient({ dashboardUrl, token });
+                // Asked before the bundle pick, and only when it is a real question —
+                // see `offerWorkspaceDeclaration`. It writes a different key of the same
+                // committed file, so the two are adjacent rather than combined: one says
+                // which bundles this repo receives, the other whose guidance it is.
+                if (interactive && !forcedPull) {
+                    await offerWorkspaceDeclaration(client, cwd);
+                }
                 const offered = (await client.listBundles()).bundles.map((bundle) => ({
                     id: bundle.id,
                     slug: bundle.slug,