moorhen 0.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/baby-gru/CootWorker.js +1071 -0
- package/baby-gru/darkly.css +12 -0
- package/baby-gru/flatly.css +12 -0
- package/baby-gru/keyboard-blank.svg +3126 -0
- package/baby-gru/monomers/a/A.cif +271 -0
- package/baby-gru/monomers/a/ALA.cif +164 -0
- package/baby-gru/monomers/a/ARG.cif +252 -0
- package/baby-gru/monomers/a/ASN.cif +192 -0
- package/baby-gru/monomers/a/ASP.cif +178 -0
- package/baby-gru/monomers/c/C.cif +255 -0
- package/baby-gru/monomers/c/CIT.cif +167 -0
- package/baby-gru/monomers/c/CYS.cif +169 -0
- package/baby-gru/monomers/d/DA.cif +266 -0
- package/baby-gru/monomers/d/DC.cif +250 -0
- package/baby-gru/monomers/d/DG.cif +271 -0
- package/baby-gru/monomers/d/DT.cif +256 -0
- package/baby-gru/monomers/e/EDO.cif +108 -0
- package/baby-gru/monomers/g/G.cif +276 -0
- package/baby-gru/monomers/g/GLN.cif +208 -0
- package/baby-gru/monomers/g/GLU.cif +194 -0
- package/baby-gru/monomers/g/GLY.cif +138 -0
- package/baby-gru/monomers/g/GOL.cif +134 -0
- package/baby-gru/monomers/h/HIS.cif +215 -0
- package/baby-gru/monomers/h/HOH.cif +55 -0
- package/baby-gru/monomers/i/ILE.cif +213 -0
- package/baby-gru/monomers/l/LEU.cif +213 -0
- package/baby-gru/monomers/l/LYS.cif +228 -0
- package/baby-gru/monomers/m/MET.cif +201 -0
- package/baby-gru/monomers/m/MSE.cif +201 -0
- package/baby-gru/monomers/n/NA.cif +30 -0
- package/baby-gru/monomers/p/PHE.cif +233 -0
- package/baby-gru/monomers/p/PO4.cif +86 -0
- package/baby-gru/monomers/p/PRO.cif +188 -0
- package/baby-gru/monomers/s/SER.cif +169 -0
- package/baby-gru/monomers/s/SO4.cif +86 -0
- package/baby-gru/monomers/t/THR.cif +186 -0
- package/baby-gru/monomers/t/TRP.cif +263 -0
- package/baby-gru/monomers/t/TYR.cif +238 -0
- package/baby-gru/monomers/u/U.cif +248 -0
- package/baby-gru/monomers/v/VAL.cif +197 -0
- package/baby-gru/pixmaps/MoorhenLogo.png +0 -0
- package/baby-gru/pixmaps/add-alt-conf.svg +127 -0
- package/baby-gru/pixmaps/add-peptide-1.svg +257 -0
- package/baby-gru/pixmaps/atom-at-pointer.svg +91 -0
- package/baby-gru/pixmaps/auto-fit-rotamer.svg +118 -0
- package/baby-gru/pixmaps/cis-trans.svg +392 -0
- package/baby-gru/pixmaps/delete.svg +94 -0
- package/baby-gru/pixmaps/diff-map.png +0 -0
- package/baby-gru/pixmaps/drag.svg +253 -0
- package/baby-gru/pixmaps/edit-chi.svg +303 -0
- package/baby-gru/pixmaps/flip-peptide.svg +169 -0
- package/baby-gru/pixmaps/jed-flip-reverse.svg +286 -0
- package/baby-gru/pixmaps/map.svg +114 -0
- package/baby-gru/pixmaps/mutate.svg +111 -0
- package/baby-gru/pixmaps/rama-plot-gly-normal.png +0 -0
- package/baby-gru/pixmaps/rama-plot-gly-outlier.png +0 -0
- package/baby-gru/pixmaps/rama-plot-other-normal.png +0 -0
- package/baby-gru/pixmaps/rama-plot-other-outlier.png +0 -0
- package/baby-gru/pixmaps/rama-plot-pro-normal.png +0 -0
- package/baby-gru/pixmaps/rama-plot-pro-outlier.png +0 -0
- package/baby-gru/pixmaps/rama2_all.png +0 -0
- package/baby-gru/pixmaps/rama2_gly.png +0 -0
- package/baby-gru/pixmaps/rama2_ileval.png +0 -0
- package/baby-gru/pixmaps/rama2_non_gly_pro.png +0 -0
- package/baby-gru/pixmaps/rama2_non_gly_pro_pre_pro_ileval.png +0 -0
- package/baby-gru/pixmaps/rama2_pre_pro.png +0 -0
- package/baby-gru/pixmaps/rama2_pro.png +0 -0
- package/baby-gru/pixmaps/refine-1.svg +140 -0
- package/baby-gru/pixmaps/rigid-body.svg +124 -0
- package/baby-gru/pixmaps/rotamers.svg +78 -0
- package/baby-gru/pixmaps/rtz.svg +281 -0
- package/baby-gru/pixmaps/side-chain-180.svg +129 -0
- package/baby-gru/pixmaps/spin-view.svg +104 -0
- package/baby-gru/pixmaps/temperature.svg +92 -0
- package/baby-gru/tutorials/NUT.cif +453 -0
- package/baby-gru/tutorials/legend.html +3 -0
- package/baby-gru/tutorials/moorhen-tutorial-map-number-1.mtz +0 -0
- package/baby-gru/tutorials/moorhen-tutorial-map-number-2.mtz +0 -0
- package/baby-gru/tutorials/moorhen-tutorial-map-number-3.mtz +0 -0
- package/baby-gru/tutorials/moorhen-tutorial-map-number-4.mtz +0 -0
- package/baby-gru/tutorials/moorhen-tutorial-structure-number-1.pdb +2211 -0
- package/baby-gru/tutorials/moorhen-tutorial-structure-number-2.pdb +2018 -0
- package/baby-gru/tutorials/moorhen-tutorial-structure-number-3.pdb +1090 -0
- package/baby-gru/tutorials/moorhen-tutorial-structure-number-4.pdb +2801 -0
- package/baby-gru/wasm/RDKit_minimal.js +21 -0
- package/baby-gru/wasm/RDKit_minimal.wasm +0 -0
- package/baby-gru/wasm/cif_pdb_worker.js +33 -0
- package/baby-gru/wasm/coot_env_web.js +5 -0
- package/baby-gru/wasm/crystallography_worker.js +610 -0
- package/baby-gru/wasm/mini_rsr_worker.js +72 -0
- package/baby-gru/wasm/monid_to_pdb_worker.js +253 -0
- package/baby-gru/wasm/moorhen.data +246292 -0
- package/baby-gru/wasm/moorhen.js +21 -0
- package/baby-gru/wasm/moorhen.wasm +0 -0
- package/baby-gru/wasm/moorhen.worker.js +1 -0
- package/baby-gru/wasm/mtz_arraybuffer_worker.js +59 -0
- package/baby-gru/wasm/mtz_worker.js +45 -0
- package/baby-gru/wasm/nma_worker.js +103 -0
- package/baby-gru/wasm/papaparse.min.js +7 -0
- package/baby-gru/wasm/pdb_worker.js +282 -0
- package/baby-gru/wasm/smiles_to_pdb_worker.js +252 -0
- package/baby-gru/wasm/superpose_worker.js +144 -0
- package/baby-gru/wasm/web_example.js +21 -0
- package/baby-gru/wasm/web_example.wasm +0 -0
- package/moorhen.css +418 -0
- package/package.json +176 -0
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data_comp_list
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SO4 SO4 "SULFATE ION" NON-POLYMER 5 5 .
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#
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data_comp_SO4
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loop_
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_chem_comp_atom.type_symbol
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_chem_comp_atom.y
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_chem_comp_atom.z
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SO4 S S S3 0 16.537 34.975 5.493
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SO4 O1 O O 0 17.831 34.952 4.866
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SO4 O2 O O 0 16.570 35.855 6.629
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SO4 O3 O OS -1 15.557 35.444 4.551
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SO4 O4 O OS -1 16.190 33.647 5.924
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loop_
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_chem_comp_bond.comp_id
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_chem_comp_bond.atom_id_1
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_chem_comp_bond.atom_id_2
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_chem_comp_bond.type
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_chem_comp_bond.aromatic
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_chem_comp_bond.value_dist_nucleus
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_chem_comp_bond.value_dist_nucleus_esd
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_chem_comp_bond.value_dist
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_chem_comp_bond.value_dist_esd
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SO4 S O1 DOUBLE n 1.438 0.0156 1.438 0.0156
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SO4 S O2 DOUBLE n 1.438 0.0156 1.438 0.0156
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SO4 S O3 SINGLE n 1.438 0.0156 1.438 0.0156
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SO4 S O4 SINGLE n 1.438 0.0156 1.438 0.0156
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loop_
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_chem_comp_angle.comp_id
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_chem_comp_angle.atom_id_1
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_chem_comp_angle.atom_id_2
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_chem_comp_angle.atom_id_3
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_chem_comp_angle.value_angle
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_chem_comp_angle.value_angle_esd
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SO4 O1 S O2 109.467 1.50
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SO4 O1 S O3 109.467 1.50
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SO4 O1 S O4 109.467 1.50
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SO4 O2 S O3 109.467 1.50
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SO4 O2 S O4 109.467 1.50
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SO4 O3 S O4 109.467 1.50
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loop_
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_chem_comp_chir.comp_id
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_chem_comp_chir.id
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_chem_comp_chir.atom_id_centre
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_chem_comp_chir.atom_id_1
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_chem_comp_chir.atom_id_2
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_chem_comp_chir.atom_id_3
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_chem_comp_chir.volume_sign
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SO4 chir_1 S O1 O2 O3 both
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loop_
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_pdbx_chem_comp_descriptor.comp_id
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_pdbx_chem_comp_descriptor.type
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_pdbx_chem_comp_descriptor.program
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_pdbx_chem_comp_descriptor.program_version
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_pdbx_chem_comp_descriptor.descriptor
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SO4 SMILES ACDLabs 10.04 "[O-]S([O-])(=O)=O"
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SO4 SMILES_CANONICAL CACTVS 3.341 "[O-][S]([O-])(=O)=O"
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SO4 SMILES CACTVS 3.341 "[O-][S]([O-])(=O)=O"
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SO4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[O-]S(=O)(=O)[O-]"
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SO4 SMILES "OpenEye OEToolkits" 1.5.0 "[O-]S(=O)(=O)[O-]"
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SO4 InChI InChI 1.03 InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
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SO4 InChIKey InChI 1.03 QAOWNCQODCNURD-UHFFFAOYSA-L
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loop_
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_pdbx_chem_comp_description_generator.comp_id
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_pdbx_chem_comp_description_generator.program_name
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_pdbx_chem_comp_description_generator.program_version
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_pdbx_chem_comp_description_generator.descriptor
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SO4 acedrg 243 "dictionary generator"
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SO4 acedrg_database 11 "data source"
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SO4 rdkit 2017.03.2 "Chemoinformatics tool"
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SO4 refmac5 5.8.0238 "optimization tool"
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_chem_comp.name
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_chem_comp.number_atoms_all
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THR THR THREONINE peptide 17 8 .
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THR N N NT3 1 36.297 32.044 31.823
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THR CA C CH1 0 35.038 31.219 31.795
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THR C C C 0 35.076 30.251 30.605
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THR O O O 0 35.114 30.669 29.448
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THR CB C CH1 0 33.786 32.108 31.748
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THR OG1 O OH1 0 33.891 33.073 32.797
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THR CG2 C CH3 0 32.492 31.332 31.881
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THR OXT O OC -1 35.069 29.032 30.779
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THR H H H 0 36.079 33.017 31.985
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THR H2 H H 0 36.786 31.972 30.998
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THR H3 H H 0 36.853 31.731 32.541
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THR HA H H 0 35.011 30.688 32.624
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THR HB H H 0 33.780 32.582 30.882
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THR HG1 H H 0 33.884 32.686 33.553
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THR HG21 H H 0 32.667 30.468 32.297
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THR HG22 H H 0 32.104 31.193 30.999
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THR HG23 H H 0 31.864 31.833 32.433
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loop_
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_chem_comp_tree.comp_id
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_chem_comp_tree.atom_forward
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THR N n/a CA START
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THR H N . .
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THR H2 N . .
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THR H3 N . .
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THR CA N C .
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THR HA CA . .
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THR CB CA CG2 .
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THR HB CB . .
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THR OG1 CB HG1 .
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THR HG1 OG1 . .
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THR CG2 CB HG23 .
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THR HG21 CG2 . .
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THR HG22 CG2 . .
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THR HG23 CG2 . .
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THR C CA . END
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THR O C . .
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THR OXT C . .
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_chem_comp_bond.comp_id
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_chem_comp_bond.atom_id_1
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_chem_comp_bond.atom_id_2
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_chem_comp_bond.type
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_chem_comp_bond.aromatic
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_chem_comp_bond.value_dist_nucleus
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_chem_comp_bond.value_dist_nucleus_esd
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_chem_comp_bond.value_dist
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_chem_comp_bond.value_dist_esd
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THR N CA SINGLE n 1.488 0.0100 1.488 0.0100
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THR CA C SINGLE n 1.533 0.0100 1.533 0.0100
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THR CA CB SINGLE n 1.534 0.0100 1.534 0.0100
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THR C O DOUBLE n 1.247 0.0187 1.247 0.0187
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THR C OXT SINGLE n 1.247 0.0187 1.247 0.0187
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THR CB OG1 SINGLE n 1.428 0.0100 1.428 0.0100
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THR CB CG2 SINGLE n 1.513 0.0100 1.513 0.0100
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THR N H SINGLE n 1.036 0.0160 0.911 0.0200
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THR N H2 SINGLE n 1.036 0.0160 0.911 0.0200
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THR N H3 SINGLE n 1.036 0.0160 0.911 0.0200
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THR CA HA SINGLE n 1.089 0.0100 0.985 0.0200
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THR CB HB SINGLE n 1.089 0.0100 0.987 0.0200
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THR OG1 HG1 SINGLE n 0.970 0.0120 0.848 0.0200
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THR CG2 HG21 SINGLE n 1.089 0.0100 0.974 0.0145
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THR CG2 HG22 SINGLE n 1.089 0.0100 0.974 0.0145
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THR CG2 HG23 SINGLE n 1.089 0.0100 0.974 0.0145
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_chem_comp_angle.value_angle
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_chem_comp_angle.value_angle_esd
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THR CA N H 109.889 1.50
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THR CA N H2 109.889 1.50
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THR CA N H3 109.889 1.50
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THR H N H2 109.028 2.41
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THR H N H3 109.028 2.41
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THR H2 N H3 109.028 2.41
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THR N CA C 109.414 1.50
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105
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+
THR N CA CB 111.125 1.50
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106
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+
THR N CA HA 108.031 1.50
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107
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+
THR C CA CB 111.511 2.91
|
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108
|
+
THR C CA HA 108.600 1.50
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109
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+
THR CB CA HA 108.620 1.50
|
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110
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+
THR CA C O 117.003 1.50
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|
111
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+
THR CA C OXT 117.003 1.50
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112
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+
THR O C OXT 125.994 1.50
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113
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+
THR CA CB OG1 108.093 2.62
|
|
114
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+
THR CA CB CG2 112.909 1.50
|
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115
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+
THR CA CB HB 108.271 1.50
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116
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+
THR OG1 CB CG2 109.779 2.11
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117
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+
THR OG1 CB HB 108.878 1.50
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118
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+
THR CG2 CB HB 108.799 1.50
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119
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THR CB OG1 HG1 109.608 2.55
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120
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+
THR CB CG2 HG21 109.564 1.50
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THR CB CG2 HG22 109.564 1.50
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122
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THR CB CG2 HG23 109.564 1.50
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123
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THR HG21 CG2 HG22 109.425 1.50
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THR HG21 CG2 HG23 109.425 1.50
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THR HG22 CG2 HG23 109.425 1.50
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loop_
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_chem_comp_tor.comp_id
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_chem_comp_tor.value_angle_esd
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_chem_comp_tor.period
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137
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THR chi1 N CA CB CG2 180.000 10.0 3
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138
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THR hh1 CA CB OG1 HG1 -60.000 10.0 3
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139
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THR hh2 CA CB CG2 HG23 -60.000 10.0 3
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140
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THR sp3_sp3_1 C CA N H 180.000 10.0 3
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THR sp2_sp3_1 O C CA N 0.000 10.0 6
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THR chir_1 CA N C CB positive
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THR chir_2 CB OG1 CA CG2 negative
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_chem_comp_plane_atom.dist_esd
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THR plan-1 C 0.020
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THR plan-1 CA 0.020
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THR plan-1 O 0.020
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THR plan-1 OXT 0.020
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_pdbx_chem_comp_descriptor.comp_id
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_pdbx_chem_comp_descriptor.program_version
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_pdbx_chem_comp_descriptor.descriptor
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THR SMILES ACDLabs 10.04 O=C(O)C(N)C(O)C
|
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171
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+
THR SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H](N)C(O)=O
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THR SMILES CACTVS 3.341 C[CH](O)[CH](N)C(O)=O
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THR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)O)N)O
|
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174
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THR SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)O)N)O
|
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175
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+
THR InChI InChI 1.03 InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1
|
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THR InChIKey InChI 1.03 AYFVYJQAPQTCCC-GBXIJSLDSA-N
|
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_pdbx_chem_comp_description_generator.comp_id
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_pdbx_chem_comp_description_generator.program_version
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_pdbx_chem_comp_description_generator.descriptor
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THR acedrg 243 "dictionary generator"
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THR acedrg_database 11 "data source"
|
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185
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THR rdkit 2017.03.2 "Chemoinformatics tool"
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186
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+
THR refmac5 5.8.0238 "optimization tool"
|
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@@ -0,0 +1,263 @@
|
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1
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+
data_comp_list
|
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2
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+
loop_
|
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3
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+
_chem_comp.id
|
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4
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+
_chem_comp.three_letter_code
|
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_chem_comp.name
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6
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+
_chem_comp.group
|
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7
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+
_chem_comp.number_atoms_all
|
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_chem_comp.number_atoms_nh
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9
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+
_chem_comp.desc_level
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TRP TRP TRYPTOPHAN peptide 27 15 .
|
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11
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+
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12
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+
data_comp_TRP
|
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13
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+
loop_
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+
_chem_comp_atom.comp_id
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_chem_comp_atom.atom_id
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+
_chem_comp_atom.type_symbol
|
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+
_chem_comp_atom.type_energy
|
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_chem_comp_atom.charge
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_chem_comp_atom.x
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_chem_comp_atom.y
|
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_chem_comp_atom.z
|
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22
|
+
TRP N N NT3 1 74.645 60.516 32.853
|
|
23
|
+
TRP CA C CH1 0 74.539 61.804 32.094
|
|
24
|
+
TRP C C C 0 73.630 61.616 30.872
|
|
25
|
+
TRP O O O 0 73.006 62.565 30.396
|
|
26
|
+
TRP CB C CH2 0 75.928 62.312 31.683
|
|
27
|
+
TRP CG C CR5 0 76.819 62.667 32.834
|
|
28
|
+
TRP CD1 C CR15 0 77.980 62.047 33.195
|
|
29
|
+
TRP CD2 C CR56 0 76.627 63.736 33.778
|
|
30
|
+
TRP NE1 N NR5 0 78.522 62.650 34.298
|
|
31
|
+
TRP CE2 C CR56 0 77.716 63.690 34.679
|
|
32
|
+
TRP CE3 C CR16 0 75.647 64.724 33.953
|
|
33
|
+
TRP CZ2 C CR16 0 77.845 64.595 35.736
|
|
34
|
+
TRP CZ3 C CR16 0 75.776 65.618 34.997
|
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35
|
+
TRP CH2 C CR16 0 76.862 65.552 35.876
|
|
36
|
+
TRP OXT O OC -1 73.502 60.514 30.339
|
|
37
|
+
TRP H H H 0 75.294 59.898 32.386
|
|
38
|
+
TRP H2 H H 0 73.786 60.089 32.905
|
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39
|
+
TRP H3 H H 0 74.955 60.689 33.744
|
|
40
|
+
TRP HA H H 0 74.133 62.475 32.691
|
|
41
|
+
TRP HB3 H H 0 75.810 63.102 31.116
|
|
42
|
+
TRP HB2 H H 0 76.362 61.620 31.143
|
|
43
|
+
TRP HD1 H H 0 78.360 61.303 32.753
|
|
44
|
+
TRP HE1 H H 0 79.266 62.408 34.695
|
|
45
|
+
TRP HE3 H H 0 74.910 64.776 33.365
|
|
46
|
+
TRP HZ2 H H 0 78.577 64.551 36.327
|
|
47
|
+
TRP HZ3 H H 0 75.120 66.286 35.121
|
|
48
|
+
TRP HH2 H H 0 76.925 66.175 36.579
|
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49
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+
|
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50
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+
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_chem_comp_tree.comp_id
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_chem_comp_tree.atom_id
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_chem_comp_tree.atom_back
|
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_chem_comp_tree.atom_forward
|
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55
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+
_chem_comp_tree.connect_type
|
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56
|
+
TRP N n/a CA START
|
|
57
|
+
TRP H N . .
|
|
58
|
+
TRP H2 N . .
|
|
59
|
+
TRP H3 N . .
|
|
60
|
+
TRP CA N C .
|
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61
|
+
TRP HA CA . .
|
|
62
|
+
TRP CB CA CG .
|
|
63
|
+
TRP HB3 CB . .
|
|
64
|
+
TRP HB2 CB . .
|
|
65
|
+
TRP CG CB CD1 .
|
|
66
|
+
TRP CD1 CG NE1 .
|
|
67
|
+
TRP HD1 CD1 . .
|
|
68
|
+
TRP NE1 CD1 CE2 .
|
|
69
|
+
TRP HE1 NE1 . .
|
|
70
|
+
TRP CE2 NE1 CD2 .
|
|
71
|
+
TRP CD2 CE2 CE3 .
|
|
72
|
+
TRP CE3 CD2 CZ3 .
|
|
73
|
+
TRP HE3 CE3 . .
|
|
74
|
+
TRP CZ3 CE3 CH2 .
|
|
75
|
+
TRP HZ3 CZ3 . .
|
|
76
|
+
TRP CH2 CZ3 CZ2 .
|
|
77
|
+
TRP HH2 CH2 . .
|
|
78
|
+
TRP CZ2 CH2 HZ2 .
|
|
79
|
+
TRP HZ2 CZ2 . .
|
|
80
|
+
TRP C CA . END
|
|
81
|
+
TRP O C . .
|
|
82
|
+
TRP OXT C . .
|
|
83
|
+
TRP CD2 CG . ADD
|
|
84
|
+
|
|
85
|
+
loop_
|
|
86
|
+
_chem_comp_bond.comp_id
|
|
87
|
+
_chem_comp_bond.atom_id_1
|
|
88
|
+
_chem_comp_bond.atom_id_2
|
|
89
|
+
_chem_comp_bond.type
|
|
90
|
+
_chem_comp_bond.aromatic
|
|
91
|
+
_chem_comp_bond.value_dist_nucleus
|
|
92
|
+
_chem_comp_bond.value_dist_nucleus_esd
|
|
93
|
+
_chem_comp_bond.value_dist
|
|
94
|
+
_chem_comp_bond.value_dist_esd
|
|
95
|
+
TRP N CA SINGLE n 1.488 0.0100 1.488 0.0100
|
|
96
|
+
TRP CA C SINGLE n 1.533 0.0100 1.533 0.0100
|
|
97
|
+
TRP CA CB SINGLE n 1.534 0.0118 1.534 0.0118
|
|
98
|
+
TRP C O DOUBLE n 1.247 0.0187 1.247 0.0187
|
|
99
|
+
TRP C OXT SINGLE n 1.247 0.0187 1.247 0.0187
|
|
100
|
+
TRP CB CG SINGLE n 1.498 0.0100 1.498 0.0100
|
|
101
|
+
TRP CG CD1 DOUBLE y 1.365 0.0100 1.365 0.0100
|
|
102
|
+
TRP CG CD2 SINGLE y 1.439 0.0100 1.439 0.0100
|
|
103
|
+
TRP CD1 NE1 SINGLE y 1.369 0.0100 1.369 0.0100
|
|
104
|
+
TRP CD2 CE2 DOUBLE y 1.411 0.0100 1.411 0.0100
|
|
105
|
+
TRP CD2 CE3 SINGLE y 1.399 0.0100 1.399 0.0100
|
|
106
|
+
TRP NE1 CE2 SINGLE y 1.370 0.0100 1.370 0.0100
|
|
107
|
+
TRP CE2 CZ2 SINGLE y 1.394 0.0100 1.394 0.0100
|
|
108
|
+
TRP CE3 CZ3 DOUBLE y 1.377 0.0100 1.377 0.0100
|
|
109
|
+
TRP CZ2 CH2 DOUBLE y 1.376 0.0100 1.376 0.0100
|
|
110
|
+
TRP CZ3 CH2 SINGLE y 1.395 0.0112 1.395 0.0112
|
|
111
|
+
TRP N H SINGLE n 1.036 0.0160 0.911 0.0200
|
|
112
|
+
TRP N H2 SINGLE n 1.036 0.0160 0.911 0.0200
|
|
113
|
+
TRP N H3 SINGLE n 1.036 0.0160 0.911 0.0200
|
|
114
|
+
TRP CA HA SINGLE n 1.089 0.0100 0.986 0.0200
|
|
115
|
+
TRP CB HB3 SINGLE n 1.089 0.0100 0.979 0.0197
|
|
116
|
+
TRP CB HB2 SINGLE n 1.089 0.0100 0.979 0.0197
|
|
117
|
+
TRP CD1 HD1 SINGLE n 1.082 0.0130 0.945 0.0191
|
|
118
|
+
TRP NE1 HE1 SINGLE n 1.016 0.0100 0.877 0.0200
|
|
119
|
+
TRP CE3 HE3 SINGLE n 1.082 0.0130 0.944 0.0200
|
|
120
|
+
TRP CZ2 HZ2 SINGLE n 1.082 0.0130 0.942 0.0188
|
|
121
|
+
TRP CZ3 HZ3 SINGLE n 1.082 0.0130 0.944 0.0181
|
|
122
|
+
TRP CH2 HH2 SINGLE n 1.082 0.0130 0.941 0.0181
|
|
123
|
+
|
|
124
|
+
loop_
|
|
125
|
+
_chem_comp_angle.comp_id
|
|
126
|
+
_chem_comp_angle.atom_id_1
|
|
127
|
+
_chem_comp_angle.atom_id_2
|
|
128
|
+
_chem_comp_angle.atom_id_3
|
|
129
|
+
_chem_comp_angle.value_angle
|
|
130
|
+
_chem_comp_angle.value_angle_esd
|
|
131
|
+
TRP CA N H 109.321 1.91
|
|
132
|
+
TRP CA N H2 109.321 1.91
|
|
133
|
+
TRP CA N H3 109.321 1.91
|
|
134
|
+
TRP H N H2 109.028 2.41
|
|
135
|
+
TRP H N H3 109.028 2.41
|
|
136
|
+
TRP H2 N H3 109.028 2.41
|
|
137
|
+
TRP N CA C 109.666 1.50
|
|
138
|
+
TRP N CA CB 110.562 1.50
|
|
139
|
+
TRP N CA HA 108.030 1.50
|
|
140
|
+
TRP C CA CB 111.644 1.50
|
|
141
|
+
TRP C CA HA 108.922 1.50
|
|
142
|
+
TRP CB CA HA 108.128 1.50
|
|
143
|
+
TRP CA C O 117.134 1.50
|
|
144
|
+
TRP CA C OXT 117.134 1.50
|
|
145
|
+
TRP O C OXT 125.731 1.50
|
|
146
|
+
TRP CA CB CG 113.843 1.64
|
|
147
|
+
TRP CA CB HB3 108.266 1.50
|
|
148
|
+
TRP CA CB HB2 108.266 1.50
|
|
149
|
+
TRP CG CB HB3 109.029 1.50
|
|
150
|
+
TRP CG CB HB2 109.029 1.50
|
|
151
|
+
TRP HB3 CB HB2 107.759 1.50
|
|
152
|
+
TRP CB CG CD1 127.068 1.62
|
|
153
|
+
TRP CB CG CD2 126.820 1.50
|
|
154
|
+
TRP CD1 CG CD2 106.112 1.50
|
|
155
|
+
TRP CG CD1 NE1 110.404 1.50
|
|
156
|
+
TRP CG CD1 HD1 125.159 1.59
|
|
157
|
+
TRP NE1 CD1 HD1 124.437 1.50
|
|
158
|
+
TRP CG CD2 CE2 106.987 1.50
|
|
159
|
+
TRP CG CD2 CE3 134.307 1.50
|
|
160
|
+
TRP CE2 CD2 CE3 118.706 1.50
|
|
161
|
+
TRP CD1 NE1 CE2 109.042 1.50
|
|
162
|
+
TRP CD1 NE1 HE1 125.328 1.77
|
|
163
|
+
TRP CE2 NE1 HE1 125.630 1.60
|
|
164
|
+
TRP CD2 CE2 NE1 107.455 1.50
|
|
165
|
+
TRP CD2 CE2 CZ2 122.250 1.50
|
|
166
|
+
TRP NE1 CE2 CZ2 130.294 1.50
|
|
167
|
+
TRP CD2 CE3 CZ3 118.817 1.50
|
|
168
|
+
TRP CD2 CE3 HE3 120.505 1.50
|
|
169
|
+
TRP CZ3 CE3 HE3 120.678 1.50
|
|
170
|
+
TRP CE2 CZ2 CH2 117.385 1.50
|
|
171
|
+
TRP CE2 CZ2 HZ2 121.137 1.50
|
|
172
|
+
TRP CH2 CZ2 HZ2 121.477 1.50
|
|
173
|
+
TRP CE3 CZ3 CH2 121.212 1.50
|
|
174
|
+
TRP CE3 CZ3 HZ3 119.471 1.50
|
|
175
|
+
TRP CH2 CZ3 HZ3 119.316 1.50
|
|
176
|
+
TRP CZ2 CH2 CZ3 121.628 1.50
|
|
177
|
+
TRP CZ2 CH2 HH2 119.132 1.50
|
|
178
|
+
TRP CZ3 CH2 HH2 119.240 1.50
|
|
179
|
+
|
|
180
|
+
loop_
|
|
181
|
+
_chem_comp_tor.comp_id
|
|
182
|
+
_chem_comp_tor.id
|
|
183
|
+
_chem_comp_tor.atom_id_1
|
|
184
|
+
_chem_comp_tor.atom_id_2
|
|
185
|
+
_chem_comp_tor.atom_id_3
|
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186
|
+
_chem_comp_tor.atom_id_4
|
|
187
|
+
_chem_comp_tor.value_angle
|
|
188
|
+
_chem_comp_tor.value_angle_esd
|
|
189
|
+
_chem_comp_tor.period
|
|
190
|
+
TRP chi1 N CA CB CG -60.000 10.0 3
|
|
191
|
+
TRP chi2 CA CB CG CD1 120.000 10.0 6
|
|
192
|
+
TRP CONST_1 CB CG CD1 NE1 180.000 10.0 2
|
|
193
|
+
TRP CONST_2 CG CD1 NE1 CE2 0.000 10.0 2
|
|
194
|
+
TRP CONST_3 NE1 CE2 CD2 CE3 180.000 10.0 2
|
|
195
|
+
TRP CONST_4 CE2 CD2 CE3 CZ3 0.000 10.0 2
|
|
196
|
+
TRP CONST_5 CD1 NE1 CE2 CD2 0.000 10.0 2
|
|
197
|
+
TRP CONST_6 CD2 CE3 CZ3 CH2 0.000 10.0 2
|
|
198
|
+
TRP CONST_7 CZ3 CH2 CZ2 CE2 0.000 10.0 2
|
|
199
|
+
TRP CONST_8 CE3 CZ3 CH2 CZ2 0.000 10.0 2
|
|
200
|
+
TRP sp3_sp3_1 C CA N H 180.000 10.0 3
|
|
201
|
+
TRP const_33 CE2 CD2 CG CD1 0.000 10.0 2
|
|
202
|
+
TRP const_17 CD2 CE2 CZ2 CH2 0.000 10.0 2
|
|
203
|
+
TRP sp2_sp3_1 O C CA N 0.000 10.0 6
|
|
204
|
+
|
|
205
|
+
loop_
|
|
206
|
+
_chem_comp_chir.comp_id
|
|
207
|
+
_chem_comp_chir.id
|
|
208
|
+
_chem_comp_chir.atom_id_centre
|
|
209
|
+
_chem_comp_chir.atom_id_1
|
|
210
|
+
_chem_comp_chir.atom_id_2
|
|
211
|
+
_chem_comp_chir.atom_id_3
|
|
212
|
+
_chem_comp_chir.volume_sign
|
|
213
|
+
TRP chir_1 CA N C CB positive
|
|
214
|
+
|
|
215
|
+
loop_
|
|
216
|
+
_chem_comp_plane_atom.comp_id
|
|
217
|
+
_chem_comp_plane_atom.plane_id
|
|
218
|
+
_chem_comp_plane_atom.atom_id
|
|
219
|
+
_chem_comp_plane_atom.dist_esd
|
|
220
|
+
TRP plan-1 CB 0.020
|
|
221
|
+
TRP plan-1 CD1 0.020
|
|
222
|
+
TRP plan-1 CD2 0.020
|
|
223
|
+
TRP plan-1 CE2 0.020
|
|
224
|
+
TRP plan-1 CE3 0.020
|
|
225
|
+
TRP plan-1 CG 0.020
|
|
226
|
+
TRP plan-1 CH2 0.020
|
|
227
|
+
TRP plan-1 CZ2 0.020
|
|
228
|
+
TRP plan-1 CZ3 0.020
|
|
229
|
+
TRP plan-1 HD1 0.020
|
|
230
|
+
TRP plan-1 HE1 0.020
|
|
231
|
+
TRP plan-1 HE3 0.020
|
|
232
|
+
TRP plan-1 HH2 0.020
|
|
233
|
+
TRP plan-1 HZ2 0.020
|
|
234
|
+
TRP plan-1 HZ3 0.020
|
|
235
|
+
TRP plan-1 NE1 0.020
|
|
236
|
+
TRP plan-2 C 0.020
|
|
237
|
+
TRP plan-2 CA 0.020
|
|
238
|
+
TRP plan-2 O 0.020
|
|
239
|
+
TRP plan-2 OXT 0.020
|
|
240
|
+
|
|
241
|
+
loop_
|
|
242
|
+
_pdbx_chem_comp_descriptor.comp_id
|
|
243
|
+
_pdbx_chem_comp_descriptor.type
|
|
244
|
+
_pdbx_chem_comp_descriptor.program
|
|
245
|
+
_pdbx_chem_comp_descriptor.program_version
|
|
246
|
+
_pdbx_chem_comp_descriptor.descriptor
|
|
247
|
+
TRP SMILES ACDLabs 10.04 O=C(O)C(N)Cc2c1ccccc1nc2
|
|
248
|
+
TRP SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1c[nH]c2ccccc12)C(O)=O
|
|
249
|
+
TRP SMILES CACTVS 3.341 N[CH](Cc1c[nH]c2ccccc12)C(O)=O
|
|
250
|
+
TRP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)N
|
|
251
|
+
TRP SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC(C(=O)O)N
|
|
252
|
+
TRP InChI InChI 1.03 InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1
|
|
253
|
+
TRP InChIKey InChI 1.03 QIVBCDIJIAJPQS-VIFPVBQESA-N
|
|
254
|
+
|
|
255
|
+
loop_
|
|
256
|
+
_pdbx_chem_comp_description_generator.comp_id
|
|
257
|
+
_pdbx_chem_comp_description_generator.program_name
|
|
258
|
+
_pdbx_chem_comp_description_generator.program_version
|
|
259
|
+
_pdbx_chem_comp_description_generator.descriptor
|
|
260
|
+
TRP acedrg 243 "dictionary generator"
|
|
261
|
+
TRP acedrg_database 11 "data source"
|
|
262
|
+
TRP rdkit 2017.03.2 "Chemoinformatics tool"
|
|
263
|
+
TRP refmac5 5.8.0238 "optimization tool"
|