moorhen 0.0.1

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Files changed (106) hide show
  1. package/baby-gru/CootWorker.js +1071 -0
  2. package/baby-gru/darkly.css +12 -0
  3. package/baby-gru/flatly.css +12 -0
  4. package/baby-gru/keyboard-blank.svg +3126 -0
  5. package/baby-gru/monomers/a/A.cif +271 -0
  6. package/baby-gru/monomers/a/ALA.cif +164 -0
  7. package/baby-gru/monomers/a/ARG.cif +252 -0
  8. package/baby-gru/monomers/a/ASN.cif +192 -0
  9. package/baby-gru/monomers/a/ASP.cif +178 -0
  10. package/baby-gru/monomers/c/C.cif +255 -0
  11. package/baby-gru/monomers/c/CIT.cif +167 -0
  12. package/baby-gru/monomers/c/CYS.cif +169 -0
  13. package/baby-gru/monomers/d/DA.cif +266 -0
  14. package/baby-gru/monomers/d/DC.cif +250 -0
  15. package/baby-gru/monomers/d/DG.cif +271 -0
  16. package/baby-gru/monomers/d/DT.cif +256 -0
  17. package/baby-gru/monomers/e/EDO.cif +108 -0
  18. package/baby-gru/monomers/g/G.cif +276 -0
  19. package/baby-gru/monomers/g/GLN.cif +208 -0
  20. package/baby-gru/monomers/g/GLU.cif +194 -0
  21. package/baby-gru/monomers/g/GLY.cif +138 -0
  22. package/baby-gru/monomers/g/GOL.cif +134 -0
  23. package/baby-gru/monomers/h/HIS.cif +215 -0
  24. package/baby-gru/monomers/h/HOH.cif +55 -0
  25. package/baby-gru/monomers/i/ILE.cif +213 -0
  26. package/baby-gru/monomers/l/LEU.cif +213 -0
  27. package/baby-gru/monomers/l/LYS.cif +228 -0
  28. package/baby-gru/monomers/m/MET.cif +201 -0
  29. package/baby-gru/monomers/m/MSE.cif +201 -0
  30. package/baby-gru/monomers/n/NA.cif +30 -0
  31. package/baby-gru/monomers/p/PHE.cif +233 -0
  32. package/baby-gru/monomers/p/PO4.cif +86 -0
  33. package/baby-gru/monomers/p/PRO.cif +188 -0
  34. package/baby-gru/monomers/s/SER.cif +169 -0
  35. package/baby-gru/monomers/s/SO4.cif +86 -0
  36. package/baby-gru/monomers/t/THR.cif +186 -0
  37. package/baby-gru/monomers/t/TRP.cif +263 -0
  38. package/baby-gru/monomers/t/TYR.cif +238 -0
  39. package/baby-gru/monomers/u/U.cif +248 -0
  40. package/baby-gru/monomers/v/VAL.cif +197 -0
  41. package/baby-gru/pixmaps/MoorhenLogo.png +0 -0
  42. package/baby-gru/pixmaps/add-alt-conf.svg +127 -0
  43. package/baby-gru/pixmaps/add-peptide-1.svg +257 -0
  44. package/baby-gru/pixmaps/atom-at-pointer.svg +91 -0
  45. package/baby-gru/pixmaps/auto-fit-rotamer.svg +118 -0
  46. package/baby-gru/pixmaps/cis-trans.svg +392 -0
  47. package/baby-gru/pixmaps/delete.svg +94 -0
  48. package/baby-gru/pixmaps/diff-map.png +0 -0
  49. package/baby-gru/pixmaps/drag.svg +253 -0
  50. package/baby-gru/pixmaps/edit-chi.svg +303 -0
  51. package/baby-gru/pixmaps/flip-peptide.svg +169 -0
  52. package/baby-gru/pixmaps/jed-flip-reverse.svg +286 -0
  53. package/baby-gru/pixmaps/map.svg +114 -0
  54. package/baby-gru/pixmaps/mutate.svg +111 -0
  55. package/baby-gru/pixmaps/rama-plot-gly-normal.png +0 -0
  56. package/baby-gru/pixmaps/rama-plot-gly-outlier.png +0 -0
  57. package/baby-gru/pixmaps/rama-plot-other-normal.png +0 -0
  58. package/baby-gru/pixmaps/rama-plot-other-outlier.png +0 -0
  59. package/baby-gru/pixmaps/rama-plot-pro-normal.png +0 -0
  60. package/baby-gru/pixmaps/rama-plot-pro-outlier.png +0 -0
  61. package/baby-gru/pixmaps/rama2_all.png +0 -0
  62. package/baby-gru/pixmaps/rama2_gly.png +0 -0
  63. package/baby-gru/pixmaps/rama2_ileval.png +0 -0
  64. package/baby-gru/pixmaps/rama2_non_gly_pro.png +0 -0
  65. package/baby-gru/pixmaps/rama2_non_gly_pro_pre_pro_ileval.png +0 -0
  66. package/baby-gru/pixmaps/rama2_pre_pro.png +0 -0
  67. package/baby-gru/pixmaps/rama2_pro.png +0 -0
  68. package/baby-gru/pixmaps/refine-1.svg +140 -0
  69. package/baby-gru/pixmaps/rigid-body.svg +124 -0
  70. package/baby-gru/pixmaps/rotamers.svg +78 -0
  71. package/baby-gru/pixmaps/rtz.svg +281 -0
  72. package/baby-gru/pixmaps/side-chain-180.svg +129 -0
  73. package/baby-gru/pixmaps/spin-view.svg +104 -0
  74. package/baby-gru/pixmaps/temperature.svg +92 -0
  75. package/baby-gru/tutorials/NUT.cif +453 -0
  76. package/baby-gru/tutorials/legend.html +3 -0
  77. package/baby-gru/tutorials/moorhen-tutorial-map-number-1.mtz +0 -0
  78. package/baby-gru/tutorials/moorhen-tutorial-map-number-2.mtz +0 -0
  79. package/baby-gru/tutorials/moorhen-tutorial-map-number-3.mtz +0 -0
  80. package/baby-gru/tutorials/moorhen-tutorial-map-number-4.mtz +0 -0
  81. package/baby-gru/tutorials/moorhen-tutorial-structure-number-1.pdb +2211 -0
  82. package/baby-gru/tutorials/moorhen-tutorial-structure-number-2.pdb +2018 -0
  83. package/baby-gru/tutorials/moorhen-tutorial-structure-number-3.pdb +1090 -0
  84. package/baby-gru/tutorials/moorhen-tutorial-structure-number-4.pdb +2801 -0
  85. package/baby-gru/wasm/RDKit_minimal.js +21 -0
  86. package/baby-gru/wasm/RDKit_minimal.wasm +0 -0
  87. package/baby-gru/wasm/cif_pdb_worker.js +33 -0
  88. package/baby-gru/wasm/coot_env_web.js +5 -0
  89. package/baby-gru/wasm/crystallography_worker.js +610 -0
  90. package/baby-gru/wasm/mini_rsr_worker.js +72 -0
  91. package/baby-gru/wasm/monid_to_pdb_worker.js +253 -0
  92. package/baby-gru/wasm/moorhen.data +246292 -0
  93. package/baby-gru/wasm/moorhen.js +21 -0
  94. package/baby-gru/wasm/moorhen.wasm +0 -0
  95. package/baby-gru/wasm/moorhen.worker.js +1 -0
  96. package/baby-gru/wasm/mtz_arraybuffer_worker.js +59 -0
  97. package/baby-gru/wasm/mtz_worker.js +45 -0
  98. package/baby-gru/wasm/nma_worker.js +103 -0
  99. package/baby-gru/wasm/papaparse.min.js +7 -0
  100. package/baby-gru/wasm/pdb_worker.js +282 -0
  101. package/baby-gru/wasm/smiles_to_pdb_worker.js +252 -0
  102. package/baby-gru/wasm/superpose_worker.js +144 -0
  103. package/baby-gru/wasm/web_example.js +21 -0
  104. package/baby-gru/wasm/web_example.wasm +0 -0
  105. package/moorhen.css +418 -0
  106. package/package.json +176 -0
@@ -0,0 +1,86 @@
1
+ #
2
+ data_comp_list
3
+ loop_
4
+ _chem_comp.id
5
+ _chem_comp.three_letter_code
6
+ _chem_comp.name
7
+ _chem_comp.group
8
+ _chem_comp.number_atoms_all
9
+ _chem_comp.number_atoms_nh
10
+ _chem_comp.desc_level
11
+ SO4 SO4 "SULFATE ION" NON-POLYMER 5 5 .
12
+ #
13
+ data_comp_SO4
14
+ #
15
+ loop_
16
+ _chem_comp_atom.comp_id
17
+ _chem_comp_atom.atom_id
18
+ _chem_comp_atom.type_symbol
19
+ _chem_comp_atom.type_energy
20
+ _chem_comp_atom.charge
21
+ _chem_comp_atom.x
22
+ _chem_comp_atom.y
23
+ _chem_comp_atom.z
24
+ SO4 S S S3 0 16.537 34.975 5.493
25
+ SO4 O1 O O 0 17.831 34.952 4.866
26
+ SO4 O2 O O 0 16.570 35.855 6.629
27
+ SO4 O3 O OS -1 15.557 35.444 4.551
28
+ SO4 O4 O OS -1 16.190 33.647 5.924
29
+ loop_
30
+ _chem_comp_bond.comp_id
31
+ _chem_comp_bond.atom_id_1
32
+ _chem_comp_bond.atom_id_2
33
+ _chem_comp_bond.type
34
+ _chem_comp_bond.aromatic
35
+ _chem_comp_bond.value_dist_nucleus
36
+ _chem_comp_bond.value_dist_nucleus_esd
37
+ _chem_comp_bond.value_dist
38
+ _chem_comp_bond.value_dist_esd
39
+ SO4 S O1 DOUBLE n 1.438 0.0156 1.438 0.0156
40
+ SO4 S O2 DOUBLE n 1.438 0.0156 1.438 0.0156
41
+ SO4 S O3 SINGLE n 1.438 0.0156 1.438 0.0156
42
+ SO4 S O4 SINGLE n 1.438 0.0156 1.438 0.0156
43
+ loop_
44
+ _chem_comp_angle.comp_id
45
+ _chem_comp_angle.atom_id_1
46
+ _chem_comp_angle.atom_id_2
47
+ _chem_comp_angle.atom_id_3
48
+ _chem_comp_angle.value_angle
49
+ _chem_comp_angle.value_angle_esd
50
+ SO4 O1 S O2 109.467 1.50
51
+ SO4 O1 S O3 109.467 1.50
52
+ SO4 O1 S O4 109.467 1.50
53
+ SO4 O2 S O3 109.467 1.50
54
+ SO4 O2 S O4 109.467 1.50
55
+ SO4 O3 S O4 109.467 1.50
56
+ loop_
57
+ _chem_comp_chir.comp_id
58
+ _chem_comp_chir.id
59
+ _chem_comp_chir.atom_id_centre
60
+ _chem_comp_chir.atom_id_1
61
+ _chem_comp_chir.atom_id_2
62
+ _chem_comp_chir.atom_id_3
63
+ _chem_comp_chir.volume_sign
64
+ SO4 chir_1 S O1 O2 O3 both
65
+ loop_
66
+ _pdbx_chem_comp_descriptor.comp_id
67
+ _pdbx_chem_comp_descriptor.type
68
+ _pdbx_chem_comp_descriptor.program
69
+ _pdbx_chem_comp_descriptor.program_version
70
+ _pdbx_chem_comp_descriptor.descriptor
71
+ SO4 SMILES ACDLabs 10.04 "[O-]S([O-])(=O)=O"
72
+ SO4 SMILES_CANONICAL CACTVS 3.341 "[O-][S]([O-])(=O)=O"
73
+ SO4 SMILES CACTVS 3.341 "[O-][S]([O-])(=O)=O"
74
+ SO4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[O-]S(=O)(=O)[O-]"
75
+ SO4 SMILES "OpenEye OEToolkits" 1.5.0 "[O-]S(=O)(=O)[O-]"
76
+ SO4 InChI InChI 1.03 InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
77
+ SO4 InChIKey InChI 1.03 QAOWNCQODCNURD-UHFFFAOYSA-L
78
+ loop_
79
+ _pdbx_chem_comp_description_generator.comp_id
80
+ _pdbx_chem_comp_description_generator.program_name
81
+ _pdbx_chem_comp_description_generator.program_version
82
+ _pdbx_chem_comp_description_generator.descriptor
83
+ SO4 acedrg 243 "dictionary generator"
84
+ SO4 acedrg_database 11 "data source"
85
+ SO4 rdkit 2017.03.2 "Chemoinformatics tool"
86
+ SO4 refmac5 5.8.0238 "optimization tool"
@@ -0,0 +1,186 @@
1
+ data_comp_list
2
+ loop_
3
+ _chem_comp.id
4
+ _chem_comp.three_letter_code
5
+ _chem_comp.name
6
+ _chem_comp.group
7
+ _chem_comp.number_atoms_all
8
+ _chem_comp.number_atoms_nh
9
+ _chem_comp.desc_level
10
+ THR THR THREONINE peptide 17 8 .
11
+
12
+ data_comp_THR
13
+ loop_
14
+ _chem_comp_atom.comp_id
15
+ _chem_comp_atom.atom_id
16
+ _chem_comp_atom.type_symbol
17
+ _chem_comp_atom.type_energy
18
+ _chem_comp_atom.charge
19
+ _chem_comp_atom.x
20
+ _chem_comp_atom.y
21
+ _chem_comp_atom.z
22
+ THR N N NT3 1 36.297 32.044 31.823
23
+ THR CA C CH1 0 35.038 31.219 31.795
24
+ THR C C C 0 35.076 30.251 30.605
25
+ THR O O O 0 35.114 30.669 29.448
26
+ THR CB C CH1 0 33.786 32.108 31.748
27
+ THR OG1 O OH1 0 33.891 33.073 32.797
28
+ THR CG2 C CH3 0 32.492 31.332 31.881
29
+ THR OXT O OC -1 35.069 29.032 30.779
30
+ THR H H H 0 36.079 33.017 31.985
31
+ THR H2 H H 0 36.786 31.972 30.998
32
+ THR H3 H H 0 36.853 31.731 32.541
33
+ THR HA H H 0 35.011 30.688 32.624
34
+ THR HB H H 0 33.780 32.582 30.882
35
+ THR HG1 H H 0 33.884 32.686 33.553
36
+ THR HG21 H H 0 32.667 30.468 32.297
37
+ THR HG22 H H 0 32.104 31.193 30.999
38
+ THR HG23 H H 0 31.864 31.833 32.433
39
+
40
+ loop_
41
+ _chem_comp_tree.comp_id
42
+ _chem_comp_tree.atom_id
43
+ _chem_comp_tree.atom_back
44
+ _chem_comp_tree.atom_forward
45
+ _chem_comp_tree.connect_type
46
+ THR N n/a CA START
47
+ THR H N . .
48
+ THR H2 N . .
49
+ THR H3 N . .
50
+ THR CA N C .
51
+ THR HA CA . .
52
+ THR CB CA CG2 .
53
+ THR HB CB . .
54
+ THR OG1 CB HG1 .
55
+ THR HG1 OG1 . .
56
+ THR CG2 CB HG23 .
57
+ THR HG21 CG2 . .
58
+ THR HG22 CG2 . .
59
+ THR HG23 CG2 . .
60
+ THR C CA . END
61
+ THR O C . .
62
+ THR OXT C . .
63
+
64
+ loop_
65
+ _chem_comp_bond.comp_id
66
+ _chem_comp_bond.atom_id_1
67
+ _chem_comp_bond.atom_id_2
68
+ _chem_comp_bond.type
69
+ _chem_comp_bond.aromatic
70
+ _chem_comp_bond.value_dist_nucleus
71
+ _chem_comp_bond.value_dist_nucleus_esd
72
+ _chem_comp_bond.value_dist
73
+ _chem_comp_bond.value_dist_esd
74
+ THR N CA SINGLE n 1.488 0.0100 1.488 0.0100
75
+ THR CA C SINGLE n 1.533 0.0100 1.533 0.0100
76
+ THR CA CB SINGLE n 1.534 0.0100 1.534 0.0100
77
+ THR C O DOUBLE n 1.247 0.0187 1.247 0.0187
78
+ THR C OXT SINGLE n 1.247 0.0187 1.247 0.0187
79
+ THR CB OG1 SINGLE n 1.428 0.0100 1.428 0.0100
80
+ THR CB CG2 SINGLE n 1.513 0.0100 1.513 0.0100
81
+ THR N H SINGLE n 1.036 0.0160 0.911 0.0200
82
+ THR N H2 SINGLE n 1.036 0.0160 0.911 0.0200
83
+ THR N H3 SINGLE n 1.036 0.0160 0.911 0.0200
84
+ THR CA HA SINGLE n 1.089 0.0100 0.985 0.0200
85
+ THR CB HB SINGLE n 1.089 0.0100 0.987 0.0200
86
+ THR OG1 HG1 SINGLE n 0.970 0.0120 0.848 0.0200
87
+ THR CG2 HG21 SINGLE n 1.089 0.0100 0.974 0.0145
88
+ THR CG2 HG22 SINGLE n 1.089 0.0100 0.974 0.0145
89
+ THR CG2 HG23 SINGLE n 1.089 0.0100 0.974 0.0145
90
+
91
+ loop_
92
+ _chem_comp_angle.comp_id
93
+ _chem_comp_angle.atom_id_1
94
+ _chem_comp_angle.atom_id_2
95
+ _chem_comp_angle.atom_id_3
96
+ _chem_comp_angle.value_angle
97
+ _chem_comp_angle.value_angle_esd
98
+ THR CA N H 109.889 1.50
99
+ THR CA N H2 109.889 1.50
100
+ THR CA N H3 109.889 1.50
101
+ THR H N H2 109.028 2.41
102
+ THR H N H3 109.028 2.41
103
+ THR H2 N H3 109.028 2.41
104
+ THR N CA C 109.414 1.50
105
+ THR N CA CB 111.125 1.50
106
+ THR N CA HA 108.031 1.50
107
+ THR C CA CB 111.511 2.91
108
+ THR C CA HA 108.600 1.50
109
+ THR CB CA HA 108.620 1.50
110
+ THR CA C O 117.003 1.50
111
+ THR CA C OXT 117.003 1.50
112
+ THR O C OXT 125.994 1.50
113
+ THR CA CB OG1 108.093 2.62
114
+ THR CA CB CG2 112.909 1.50
115
+ THR CA CB HB 108.271 1.50
116
+ THR OG1 CB CG2 109.779 2.11
117
+ THR OG1 CB HB 108.878 1.50
118
+ THR CG2 CB HB 108.799 1.50
119
+ THR CB OG1 HG1 109.608 2.55
120
+ THR CB CG2 HG21 109.564 1.50
121
+ THR CB CG2 HG22 109.564 1.50
122
+ THR CB CG2 HG23 109.564 1.50
123
+ THR HG21 CG2 HG22 109.425 1.50
124
+ THR HG21 CG2 HG23 109.425 1.50
125
+ THR HG22 CG2 HG23 109.425 1.50
126
+
127
+ loop_
128
+ _chem_comp_tor.comp_id
129
+ _chem_comp_tor.id
130
+ _chem_comp_tor.atom_id_1
131
+ _chem_comp_tor.atom_id_2
132
+ _chem_comp_tor.atom_id_3
133
+ _chem_comp_tor.atom_id_4
134
+ _chem_comp_tor.value_angle
135
+ _chem_comp_tor.value_angle_esd
136
+ _chem_comp_tor.period
137
+ THR chi1 N CA CB CG2 180.000 10.0 3
138
+ THR hh1 CA CB OG1 HG1 -60.000 10.0 3
139
+ THR hh2 CA CB CG2 HG23 -60.000 10.0 3
140
+ THR sp3_sp3_1 C CA N H 180.000 10.0 3
141
+ THR sp2_sp3_1 O C CA N 0.000 10.0 6
142
+
143
+ loop_
144
+ _chem_comp_chir.comp_id
145
+ _chem_comp_chir.id
146
+ _chem_comp_chir.atom_id_centre
147
+ _chem_comp_chir.atom_id_1
148
+ _chem_comp_chir.atom_id_2
149
+ _chem_comp_chir.atom_id_3
150
+ _chem_comp_chir.volume_sign
151
+ THR chir_1 CA N C CB positive
152
+ THR chir_2 CB OG1 CA CG2 negative
153
+
154
+ loop_
155
+ _chem_comp_plane_atom.comp_id
156
+ _chem_comp_plane_atom.plane_id
157
+ _chem_comp_plane_atom.atom_id
158
+ _chem_comp_plane_atom.dist_esd
159
+ THR plan-1 C 0.020
160
+ THR plan-1 CA 0.020
161
+ THR plan-1 O 0.020
162
+ THR plan-1 OXT 0.020
163
+
164
+ loop_
165
+ _pdbx_chem_comp_descriptor.comp_id
166
+ _pdbx_chem_comp_descriptor.type
167
+ _pdbx_chem_comp_descriptor.program
168
+ _pdbx_chem_comp_descriptor.program_version
169
+ _pdbx_chem_comp_descriptor.descriptor
170
+ THR SMILES ACDLabs 10.04 O=C(O)C(N)C(O)C
171
+ THR SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H](N)C(O)=O
172
+ THR SMILES CACTVS 3.341 C[CH](O)[CH](N)C(O)=O
173
+ THR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)O)N)O
174
+ THR SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)O)N)O
175
+ THR InChI InChI 1.03 InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1
176
+ THR InChIKey InChI 1.03 AYFVYJQAPQTCCC-GBXIJSLDSA-N
177
+
178
+ loop_
179
+ _pdbx_chem_comp_description_generator.comp_id
180
+ _pdbx_chem_comp_description_generator.program_name
181
+ _pdbx_chem_comp_description_generator.program_version
182
+ _pdbx_chem_comp_description_generator.descriptor
183
+ THR acedrg 243 "dictionary generator"
184
+ THR acedrg_database 11 "data source"
185
+ THR rdkit 2017.03.2 "Chemoinformatics tool"
186
+ THR refmac5 5.8.0238 "optimization tool"
@@ -0,0 +1,263 @@
1
+ data_comp_list
2
+ loop_
3
+ _chem_comp.id
4
+ _chem_comp.three_letter_code
5
+ _chem_comp.name
6
+ _chem_comp.group
7
+ _chem_comp.number_atoms_all
8
+ _chem_comp.number_atoms_nh
9
+ _chem_comp.desc_level
10
+ TRP TRP TRYPTOPHAN peptide 27 15 .
11
+
12
+ data_comp_TRP
13
+ loop_
14
+ _chem_comp_atom.comp_id
15
+ _chem_comp_atom.atom_id
16
+ _chem_comp_atom.type_symbol
17
+ _chem_comp_atom.type_energy
18
+ _chem_comp_atom.charge
19
+ _chem_comp_atom.x
20
+ _chem_comp_atom.y
21
+ _chem_comp_atom.z
22
+ TRP N N NT3 1 74.645 60.516 32.853
23
+ TRP CA C CH1 0 74.539 61.804 32.094
24
+ TRP C C C 0 73.630 61.616 30.872
25
+ TRP O O O 0 73.006 62.565 30.396
26
+ TRP CB C CH2 0 75.928 62.312 31.683
27
+ TRP CG C CR5 0 76.819 62.667 32.834
28
+ TRP CD1 C CR15 0 77.980 62.047 33.195
29
+ TRP CD2 C CR56 0 76.627 63.736 33.778
30
+ TRP NE1 N NR5 0 78.522 62.650 34.298
31
+ TRP CE2 C CR56 0 77.716 63.690 34.679
32
+ TRP CE3 C CR16 0 75.647 64.724 33.953
33
+ TRP CZ2 C CR16 0 77.845 64.595 35.736
34
+ TRP CZ3 C CR16 0 75.776 65.618 34.997
35
+ TRP CH2 C CR16 0 76.862 65.552 35.876
36
+ TRP OXT O OC -1 73.502 60.514 30.339
37
+ TRP H H H 0 75.294 59.898 32.386
38
+ TRP H2 H H 0 73.786 60.089 32.905
39
+ TRP H3 H H 0 74.955 60.689 33.744
40
+ TRP HA H H 0 74.133 62.475 32.691
41
+ TRP HB3 H H 0 75.810 63.102 31.116
42
+ TRP HB2 H H 0 76.362 61.620 31.143
43
+ TRP HD1 H H 0 78.360 61.303 32.753
44
+ TRP HE1 H H 0 79.266 62.408 34.695
45
+ TRP HE3 H H 0 74.910 64.776 33.365
46
+ TRP HZ2 H H 0 78.577 64.551 36.327
47
+ TRP HZ3 H H 0 75.120 66.286 35.121
48
+ TRP HH2 H H 0 76.925 66.175 36.579
49
+
50
+ loop_
51
+ _chem_comp_tree.comp_id
52
+ _chem_comp_tree.atom_id
53
+ _chem_comp_tree.atom_back
54
+ _chem_comp_tree.atom_forward
55
+ _chem_comp_tree.connect_type
56
+ TRP N n/a CA START
57
+ TRP H N . .
58
+ TRP H2 N . .
59
+ TRP H3 N . .
60
+ TRP CA N C .
61
+ TRP HA CA . .
62
+ TRP CB CA CG .
63
+ TRP HB3 CB . .
64
+ TRP HB2 CB . .
65
+ TRP CG CB CD1 .
66
+ TRP CD1 CG NE1 .
67
+ TRP HD1 CD1 . .
68
+ TRP NE1 CD1 CE2 .
69
+ TRP HE1 NE1 . .
70
+ TRP CE2 NE1 CD2 .
71
+ TRP CD2 CE2 CE3 .
72
+ TRP CE3 CD2 CZ3 .
73
+ TRP HE3 CE3 . .
74
+ TRP CZ3 CE3 CH2 .
75
+ TRP HZ3 CZ3 . .
76
+ TRP CH2 CZ3 CZ2 .
77
+ TRP HH2 CH2 . .
78
+ TRP CZ2 CH2 HZ2 .
79
+ TRP HZ2 CZ2 . .
80
+ TRP C CA . END
81
+ TRP O C . .
82
+ TRP OXT C . .
83
+ TRP CD2 CG . ADD
84
+
85
+ loop_
86
+ _chem_comp_bond.comp_id
87
+ _chem_comp_bond.atom_id_1
88
+ _chem_comp_bond.atom_id_2
89
+ _chem_comp_bond.type
90
+ _chem_comp_bond.aromatic
91
+ _chem_comp_bond.value_dist_nucleus
92
+ _chem_comp_bond.value_dist_nucleus_esd
93
+ _chem_comp_bond.value_dist
94
+ _chem_comp_bond.value_dist_esd
95
+ TRP N CA SINGLE n 1.488 0.0100 1.488 0.0100
96
+ TRP CA C SINGLE n 1.533 0.0100 1.533 0.0100
97
+ TRP CA CB SINGLE n 1.534 0.0118 1.534 0.0118
98
+ TRP C O DOUBLE n 1.247 0.0187 1.247 0.0187
99
+ TRP C OXT SINGLE n 1.247 0.0187 1.247 0.0187
100
+ TRP CB CG SINGLE n 1.498 0.0100 1.498 0.0100
101
+ TRP CG CD1 DOUBLE y 1.365 0.0100 1.365 0.0100
102
+ TRP CG CD2 SINGLE y 1.439 0.0100 1.439 0.0100
103
+ TRP CD1 NE1 SINGLE y 1.369 0.0100 1.369 0.0100
104
+ TRP CD2 CE2 DOUBLE y 1.411 0.0100 1.411 0.0100
105
+ TRP CD2 CE3 SINGLE y 1.399 0.0100 1.399 0.0100
106
+ TRP NE1 CE2 SINGLE y 1.370 0.0100 1.370 0.0100
107
+ TRP CE2 CZ2 SINGLE y 1.394 0.0100 1.394 0.0100
108
+ TRP CE3 CZ3 DOUBLE y 1.377 0.0100 1.377 0.0100
109
+ TRP CZ2 CH2 DOUBLE y 1.376 0.0100 1.376 0.0100
110
+ TRP CZ3 CH2 SINGLE y 1.395 0.0112 1.395 0.0112
111
+ TRP N H SINGLE n 1.036 0.0160 0.911 0.0200
112
+ TRP N H2 SINGLE n 1.036 0.0160 0.911 0.0200
113
+ TRP N H3 SINGLE n 1.036 0.0160 0.911 0.0200
114
+ TRP CA HA SINGLE n 1.089 0.0100 0.986 0.0200
115
+ TRP CB HB3 SINGLE n 1.089 0.0100 0.979 0.0197
116
+ TRP CB HB2 SINGLE n 1.089 0.0100 0.979 0.0197
117
+ TRP CD1 HD1 SINGLE n 1.082 0.0130 0.945 0.0191
118
+ TRP NE1 HE1 SINGLE n 1.016 0.0100 0.877 0.0200
119
+ TRP CE3 HE3 SINGLE n 1.082 0.0130 0.944 0.0200
120
+ TRP CZ2 HZ2 SINGLE n 1.082 0.0130 0.942 0.0188
121
+ TRP CZ3 HZ3 SINGLE n 1.082 0.0130 0.944 0.0181
122
+ TRP CH2 HH2 SINGLE n 1.082 0.0130 0.941 0.0181
123
+
124
+ loop_
125
+ _chem_comp_angle.comp_id
126
+ _chem_comp_angle.atom_id_1
127
+ _chem_comp_angle.atom_id_2
128
+ _chem_comp_angle.atom_id_3
129
+ _chem_comp_angle.value_angle
130
+ _chem_comp_angle.value_angle_esd
131
+ TRP CA N H 109.321 1.91
132
+ TRP CA N H2 109.321 1.91
133
+ TRP CA N H3 109.321 1.91
134
+ TRP H N H2 109.028 2.41
135
+ TRP H N H3 109.028 2.41
136
+ TRP H2 N H3 109.028 2.41
137
+ TRP N CA C 109.666 1.50
138
+ TRP N CA CB 110.562 1.50
139
+ TRP N CA HA 108.030 1.50
140
+ TRP C CA CB 111.644 1.50
141
+ TRP C CA HA 108.922 1.50
142
+ TRP CB CA HA 108.128 1.50
143
+ TRP CA C O 117.134 1.50
144
+ TRP CA C OXT 117.134 1.50
145
+ TRP O C OXT 125.731 1.50
146
+ TRP CA CB CG 113.843 1.64
147
+ TRP CA CB HB3 108.266 1.50
148
+ TRP CA CB HB2 108.266 1.50
149
+ TRP CG CB HB3 109.029 1.50
150
+ TRP CG CB HB2 109.029 1.50
151
+ TRP HB3 CB HB2 107.759 1.50
152
+ TRP CB CG CD1 127.068 1.62
153
+ TRP CB CG CD2 126.820 1.50
154
+ TRP CD1 CG CD2 106.112 1.50
155
+ TRP CG CD1 NE1 110.404 1.50
156
+ TRP CG CD1 HD1 125.159 1.59
157
+ TRP NE1 CD1 HD1 124.437 1.50
158
+ TRP CG CD2 CE2 106.987 1.50
159
+ TRP CG CD2 CE3 134.307 1.50
160
+ TRP CE2 CD2 CE3 118.706 1.50
161
+ TRP CD1 NE1 CE2 109.042 1.50
162
+ TRP CD1 NE1 HE1 125.328 1.77
163
+ TRP CE2 NE1 HE1 125.630 1.60
164
+ TRP CD2 CE2 NE1 107.455 1.50
165
+ TRP CD2 CE2 CZ2 122.250 1.50
166
+ TRP NE1 CE2 CZ2 130.294 1.50
167
+ TRP CD2 CE3 CZ3 118.817 1.50
168
+ TRP CD2 CE3 HE3 120.505 1.50
169
+ TRP CZ3 CE3 HE3 120.678 1.50
170
+ TRP CE2 CZ2 CH2 117.385 1.50
171
+ TRP CE2 CZ2 HZ2 121.137 1.50
172
+ TRP CH2 CZ2 HZ2 121.477 1.50
173
+ TRP CE3 CZ3 CH2 121.212 1.50
174
+ TRP CE3 CZ3 HZ3 119.471 1.50
175
+ TRP CH2 CZ3 HZ3 119.316 1.50
176
+ TRP CZ2 CH2 CZ3 121.628 1.50
177
+ TRP CZ2 CH2 HH2 119.132 1.50
178
+ TRP CZ3 CH2 HH2 119.240 1.50
179
+
180
+ loop_
181
+ _chem_comp_tor.comp_id
182
+ _chem_comp_tor.id
183
+ _chem_comp_tor.atom_id_1
184
+ _chem_comp_tor.atom_id_2
185
+ _chem_comp_tor.atom_id_3
186
+ _chem_comp_tor.atom_id_4
187
+ _chem_comp_tor.value_angle
188
+ _chem_comp_tor.value_angle_esd
189
+ _chem_comp_tor.period
190
+ TRP chi1 N CA CB CG -60.000 10.0 3
191
+ TRP chi2 CA CB CG CD1 120.000 10.0 6
192
+ TRP CONST_1 CB CG CD1 NE1 180.000 10.0 2
193
+ TRP CONST_2 CG CD1 NE1 CE2 0.000 10.0 2
194
+ TRP CONST_3 NE1 CE2 CD2 CE3 180.000 10.0 2
195
+ TRP CONST_4 CE2 CD2 CE3 CZ3 0.000 10.0 2
196
+ TRP CONST_5 CD1 NE1 CE2 CD2 0.000 10.0 2
197
+ TRP CONST_6 CD2 CE3 CZ3 CH2 0.000 10.0 2
198
+ TRP CONST_7 CZ3 CH2 CZ2 CE2 0.000 10.0 2
199
+ TRP CONST_8 CE3 CZ3 CH2 CZ2 0.000 10.0 2
200
+ TRP sp3_sp3_1 C CA N H 180.000 10.0 3
201
+ TRP const_33 CE2 CD2 CG CD1 0.000 10.0 2
202
+ TRP const_17 CD2 CE2 CZ2 CH2 0.000 10.0 2
203
+ TRP sp2_sp3_1 O C CA N 0.000 10.0 6
204
+
205
+ loop_
206
+ _chem_comp_chir.comp_id
207
+ _chem_comp_chir.id
208
+ _chem_comp_chir.atom_id_centre
209
+ _chem_comp_chir.atom_id_1
210
+ _chem_comp_chir.atom_id_2
211
+ _chem_comp_chir.atom_id_3
212
+ _chem_comp_chir.volume_sign
213
+ TRP chir_1 CA N C CB positive
214
+
215
+ loop_
216
+ _chem_comp_plane_atom.comp_id
217
+ _chem_comp_plane_atom.plane_id
218
+ _chem_comp_plane_atom.atom_id
219
+ _chem_comp_plane_atom.dist_esd
220
+ TRP plan-1 CB 0.020
221
+ TRP plan-1 CD1 0.020
222
+ TRP plan-1 CD2 0.020
223
+ TRP plan-1 CE2 0.020
224
+ TRP plan-1 CE3 0.020
225
+ TRP plan-1 CG 0.020
226
+ TRP plan-1 CH2 0.020
227
+ TRP plan-1 CZ2 0.020
228
+ TRP plan-1 CZ3 0.020
229
+ TRP plan-1 HD1 0.020
230
+ TRP plan-1 HE1 0.020
231
+ TRP plan-1 HE3 0.020
232
+ TRP plan-1 HH2 0.020
233
+ TRP plan-1 HZ2 0.020
234
+ TRP plan-1 HZ3 0.020
235
+ TRP plan-1 NE1 0.020
236
+ TRP plan-2 C 0.020
237
+ TRP plan-2 CA 0.020
238
+ TRP plan-2 O 0.020
239
+ TRP plan-2 OXT 0.020
240
+
241
+ loop_
242
+ _pdbx_chem_comp_descriptor.comp_id
243
+ _pdbx_chem_comp_descriptor.type
244
+ _pdbx_chem_comp_descriptor.program
245
+ _pdbx_chem_comp_descriptor.program_version
246
+ _pdbx_chem_comp_descriptor.descriptor
247
+ TRP SMILES ACDLabs 10.04 O=C(O)C(N)Cc2c1ccccc1nc2
248
+ TRP SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1c[nH]c2ccccc12)C(O)=O
249
+ TRP SMILES CACTVS 3.341 N[CH](Cc1c[nH]c2ccccc12)C(O)=O
250
+ TRP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)N
251
+ TRP SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC(C(=O)O)N
252
+ TRP InChI InChI 1.03 InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1
253
+ TRP InChIKey InChI 1.03 QIVBCDIJIAJPQS-VIFPVBQESA-N
254
+
255
+ loop_
256
+ _pdbx_chem_comp_description_generator.comp_id
257
+ _pdbx_chem_comp_description_generator.program_name
258
+ _pdbx_chem_comp_description_generator.program_version
259
+ _pdbx_chem_comp_description_generator.descriptor
260
+ TRP acedrg 243 "dictionary generator"
261
+ TRP acedrg_database 11 "data source"
262
+ TRP rdkit 2017.03.2 "Chemoinformatics tool"
263
+ TRP refmac5 5.8.0238 "optimization tool"