monomind 2.9.2 → 2.9.4

package/README.md

@@ -172,7 +172,7 @@ monomind org delete <name>          # remove an org
 monomind org memory <name>          # cross-run KG memory: stats (default) | search <q> | rules | rollback <run-ref>
 ```
 
-`org` has 16 subcommands total (run, stop, status, serve, test-loop, logs, report, memory, questions, answer, create, validate, migrate, list, delete, mark-complete) — `org memory` is the newest addition.
+`org` has 31 subcommands total (run, stop, pause, resume, reload, status, serve, supervisor, test-loop, logs, report, memory, costs, flow, questions, answer, approve, deny, gates, gate-approve, gate-reject, replay, resume-from, branch, decisions, create, validate, migrate, list, delete, mark-complete) — `org memory` is the newest addition.
 
 > **Note:** `/mastermind:runorg` now delegates directly to the Org Runtime v2 daemon (the same path as `monomind org run`) — there is no boss agent, no monotask board, and no manual curl calls in this path. The old prompt-orchestrated flow (Task-tool boss agent, monotask board, manual dashboard event posting) is retired to `/mastermind:runorgv1`, reachable only by that explicit legacy name, kept only for orgs not yet migrated off the v1 config shape. New orgs should use `monomind org run` (or `/mastermind:runorg`) against a hand-authored `.monomind/orgs/<name>.json`.
 
@@ -263,6 +263,8 @@ Retrieval quality is a tested invariant, not a hope: a golden-set eval (paraphra
 
 > **Privacy note:** the embedding model (~90MB) is fetched once from HuggingFace's CDN when your first document is indexed, then cached locally forever. That download is the only outbound request the Second Brain ever makes — your documents and queries never leave your machine. Offline at first index? Search degrades gracefully to keyword matching and `monomind doctor` tells you how to warm up later.
 
+> **Which model where?** Monomind uses three local embedding models, each scoped to one subsystem: `Snowflake/snowflake-arctic-embed-xs` (~88MB) for semantic task routing, MiniLM (~90MB) for Second Brain document retrieval, and `Alibaba-NLP/gte-modernbert-base` (768-dim) for the persistent memory store. See [Embeddings](./doc/commands/memory.md#hybrid-search-architecture--options) for which model each subsystem uses.
+
 ---
 
 ## 🧠 Memory That Persists
@@ -285,7 +287,7 @@ graph TD
 ```
 
 ```bash
-monomind memory store "key insight" --namespace my-project
+monomind memory store --key "key insight" --value "…" --namespace my-project
 monomind memory search "auth implementation"     # semantic (local embeddings) with keyword fallback
 ```
 
@@ -369,7 +371,7 @@ Everything runs from inside Claude Code via slash commands. Here's the highlight
 | `monomind org run <name>` | Start an org as a real SDK-backed daemon |
 | `monomind org status` / `list` | Runtime state for one or all orgs |
 | `monomind org stop <name>` | Request a graceful stop |
-| `/mastermind:approve` | Action pending approval requests |
+| `/mastermind:approvev1` | Action pending approval requests |
 
 ### Business Domains
 | Command | What it does |
@@ -399,6 +401,8 @@ Everything runs from inside Claude Code via slash commands. Here's the highlight
 | `@monoes/monodesign` | [![npm](https://img.shields.io/npm/v/@monoes/monodesign?style=flat-square&color=EC4899)](https://www.npmjs.com/package/@monoes/monodesign) | Frontend design intelligence |
 | `monofence-ai` | [![npm](https://img.shields.io/npm/v/monofence-ai?style=flat-square&color=EF4444)](https://www.npmjs.com/package/monofence-ai) | AI manipulation defence |
 
+See [CLI Reference](./doc/commands/cli-reference.md) for the full 32-command index.
+
 ---
 
 ## 🏗️ How It's Built

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "monomind",
-  "version": "2.9.2",
+  "version": "2.9.4",
   "description": "Open-source CLI extension for Claude Code and Antigravity (agy). Adds an MCP server with a codebase knowledge graph, persistent memory, multi-agent coordination, and reusable slash commands. Apache 2.0 licensed, runs locally, no data leaves your machine.",
   "type": "module",
   "bin": {
@@ -21,7 +21,7 @@
     "LICENSE"
   ],
   "dependencies": {
-    "@monoes/monomindcli": "2.9.2"
+    "@monoes/monomindcli": "2.9.4"
   },
   "overrides": {
     "hono": ">=4.12.34",
@@ -41,12 +41,15 @@
     "nanoid": ">=3.3.17"
   },
   "devDependencies": {
+    "@biomejs/biome": "^2.5.8",
+    "@types/better-sqlite3": "^7.6.13",
     "@types/node": "^20.0.0",
+    "better-sqlite3": "^12.0.0",
     "tsx": "^4.21.0",
     "typescript": "^7.0.2",
     "vite": ">=8.0.16",
     "vitest": "^4.1.4",
-    "@monoes/monograph": "1.5.7"
+    "@monoes/monograph": "1.5.8"
   },
   "engines": {
     "node": ">=20.0.0"
@@ -97,12 +100,19 @@
     "postinstall": "node -e \"if(process.platform!=='win32'){try{require('child_process').execSync('find node_modules -name ._* -delete 2>/dev/null',{stdio:'ignore'})}catch{}}\"",
     "dev": "tsx watch src/index.ts",
     "build": "tsc",
-    "build:ts": "cd packages/@monomind/cli && npm run build || true",
+    "build:ts": "cd packages/@monomind/cli && npm run build",
     "check:versions": "node scripts/check-publish-versions.mjs",
+    "docs:counts": "node scripts/generate-doc-counts.mjs",
+    "docs:counts:check": "node scripts/generate-doc-counts.mjs --check",
     "test": "vitest",
+    "test:all": "vitest --config vitest.workspace.ts",
     "test:ui": "vitest --ui",
     "test:security": "vitest run tests/security/",
     "test:semantic-eval": "node --test tests/memory/cognee-port-eval.test.mjs",
+    "test:coverage": "vitest run --coverage",
+    "lint": "biome check",
+    "lint:fix": "biome check --write",
+    "format": "biome format --write",
     "security:audit": "npm audit --audit-level high",
     "security:fix": "npm audit fix",
     "security:test": "npm run test:security",