monomind 2.7.12 → 2.7.13

package/packages/@monomind/cli/scripts/understand-analyze.mjs

@@ -1,1078 +0,0 @@
-#!/usr/bin/env node
-/**
- * understand-analyze.mjs — Built-in semantic enrichment engine for monomind:understand
- *
- * Ported from Understand-Anything (understand-anything-plugin/packages/core).
- * Ships inside @monomind/cli — no external plugin needed.
- *
- * Reads file nodes from monograph.db, calls the Anthropic API to generate
- * summaries, tags, complexity, and architectural layers, then writes results
- * back into the DB (and optionally emits a graph.json).
- *
- * Usage:
- *   node understand-analyze.mjs [options]
- *
- * Options:
- *   --dir <path>          Project directory (default: cwd)
- *   --db  <path>          monograph.db path (default: <dir>/.monomind/monograph.db)
- *   --output <path>       Write a graph.json here (default: <dir>/.understand/knowledge-graph.json)
- *   --batch-size <N>      Files per LLM batch (default: 5)
- *   --max-files <N>       Stop after N files (0 = all, default: 0)
- *   --dry-run             Print what would happen without writing to DB
- *   --no-llm              Heuristic-only mode (layers + tags from paths, no API calls)
- *   --layers-only         Skip per-file analysis, only (re-)detect layers
- *
- * Designed to be invoked by the /monomind:understand slash command. The
- * slash command runs the script in --no-llm mode and orchestrates the
- * per-file summarization through the active Claude Code session.
- */
-
-import { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';
-import { resolve, join, dirname, basename, relative } from 'node:path';
-import { createRequire } from 'node:module';
-import { fileURLToPath } from 'node:url';
-import { execFileSync, execSync, spawn } from 'node:child_process';
-
-const __dir = dirname(fileURLToPath(import.meta.url));
-const CWD   = process.cwd();
-
-// ── CLI argument helpers ─────────────────────────────────────────────────────
-function argVal(name) {
-  const i = process.argv.indexOf('--' + name);
-  return i !== -1 ? process.argv[i + 1] : null;
-}
-const hasFlag = (f) => process.argv.includes('--' + f);
-
-const projectDir  = resolve(argVal('dir')  || CWD);
-const dbPathArg   = argVal('db')   ? resolve(argVal('db'))   : join(projectDir, '.monomind', 'monograph.db');
-const outputArg   = argVal('output')? resolve(argVal('output')) : join(projectDir, '.understand', 'knowledge-graph.json');
-const batchSize      = parseInt(argVal('batch-size') || '5',  10);
-const maxFiles       = parseInt(argVal('max-files')  || '0',  10);
-const dryRun               = hasFlag('dry-run');
-const noLlm                = hasFlag('no-llm');
-const layersOnly           = hasFlag('layers-only');
-const incremental          = hasFlag('incremental');
-const importAnalysesStdin  = hasFlag('import-analyses-stdin');
-const onboard              = hasFlag('onboard');
-const onboardOut     = argVal('onboard-out') ? resolve(argVal('onboard-out')) : join(projectDir, 'ONBOARDING.md');
-
-// ── Resolve @monoes/monograph for DB access ──────────────────────────────────
-function resolveMonograph() {
-  const req = createRequire(import.meta.url);
-  const candidates = [
-    // CLI package's own node_modules (npx / global npm install)
-    join(__dir, '..', 'node_modules', '@monoes', 'monograph'),
-    // Global npm / homebrew
-    (() => { try { return join(req.resolve('npm/bin/npm-cli.js'), '..', '..', '..', '@monoes', 'monograph'); } catch { return null; } })(),
-    // Monorepo root
-    join(__dir, '..', '..', '..', '..', 'node_modules', '@monoes', 'monograph'),
-    // User project
-    join(projectDir, 'node_modules', '@monoes', 'monograph'),
-  ].filter(Boolean);
-
-  for (const c of candidates) {
-    try {
-      if (existsSync(c)) return req(c);
-    } catch {}
-  }
-  // Last resort: require by name (works when installed globally)
-  try { return req('@monoes/monograph'); } catch {}
-  return null;
-}
-
-// ── Heuristic layer detection (ported from understand-anything layer-detector) ─
-const LAYER_PATTERNS = [
-  { patterns: ['routes', 'controller', 'handler', 'endpoint', 'api'],     name: 'API Layer',           description: 'HTTP endpoints, route handlers, and API controllers' },
-  { patterns: ['service', 'usecase', 'use-case', 'business'],              name: 'Service Layer',       description: 'Business logic and application services' },
-  { patterns: ['model', 'entity', 'schema', 'database', 'db', 'migration','repository', 'repo'],
-                                                                            name: 'Data Layer',          description: 'Data models, database access, and persistence' },
-  { patterns: ['component', 'view', 'page', 'screen', 'layout', 'widget', 'ui'],
-                                                                            name: 'UI Layer',            description: 'User interface components and views' },
-  { patterns: ['middleware', 'interceptor', 'guard', 'filter', 'pipe'],    name: 'Middleware Layer',    description: 'Request/response middleware and interceptors' },
-  { patterns: ['client', 'integration', 'external', 'sdk', 'vendor', 'adapter'],
-                                                                            name: 'External Services',   description: 'External service integrations, SDKs, and third-party adapters' },
-  { patterns: ['worker', 'job', 'queue', 'cron', 'consumer', 'processor', 'scheduler', 'background'],
-                                                                            name: 'Background Tasks',    description: 'Background workers, job processors, and scheduled tasks' },
-  { patterns: ['util', 'helper', 'lib', 'common', 'shared'],               name: 'Utility Layer',       description: 'Shared utilities, helpers, and common libraries' },
-  { patterns: ['test', 'spec', '__test__', '__spec__', '__tests__'],        name: 'Test Layer',          description: 'Test files and test utilities' },
-  { patterns: ['config', 'setting', 'env'],                                 name: 'Configuration Layer', description: 'Application configuration and environment settings' },
-];
-
-function matchFileToLayer(filePath) {
-  const norm = filePath.replace(/\\/g, '/').toLowerCase();
-  const segments = norm.split('/');
-  for (const { patterns, name } of LAYER_PATTERNS) {
-    for (const seg of segments) {
-      for (const p of patterns) {
-        if (seg === p || seg === p + 's') return name;
-      }
-    }
-  }
-  return null;
-}
-
-function toLayerId(name) {
-  return 'layer:' + name.toLowerCase().replace(/\s+/g, '-');
-}
-
-function detectLayersHeuristic(fileNodes) {
-  const map = new Map(); // layerName → nodeIds[]
-  for (const node of fileNodes) {
-    const layerName = (node.file_path && matchFileToLayer(node.file_path)) || 'Core';
-    if (!map.has(layerName)) map.set(layerName, []);
-    map.get(layerName).push(node.id);
-  }
-  const layers = [];
-  for (const [name, nodeIds] of map) {
-    const pattern = LAYER_PATTERNS.find(p => p.name === name);
-    layers.push({ id: toLayerId(name), name, description: pattern?.description ?? 'Core application files', nodeIds });
-  }
-  return layers;
-}
-
-// ── Anthropic API helpers ─────────────────────────────────────────────────────
-// LLM enrichment requires ANTHROPIC_API_KEY. When the script is invoked from
-// inside a Claude Code session via /monomind:understand, the slash command
-// orchestrates the LLM work inline (using the active session) — the script
-// itself runs in --no-llm heuristic mode in that flow. Attempting to spawn
-// `claude -p` from a nested subprocess does NOT work (the nested CLI hangs
-// indefinitely), so we no longer try that path.
-const ANTHROPIC_API_KEY = process.env.ANTHROPIC_API_KEY;
-const ANTHROPIC_URL     = 'https://api.anthropic.com/v1/messages';
-const MODEL             = 'claude-haiku-4-5-20251001'; // cheapest for bulk analysis
-
-async function callClaudeViaApi(systemPrompt, userPrompt, maxTokens = 1024) {
-  const body = JSON.stringify({
-    model: MODEL,
-    max_tokens: maxTokens,
-    system: systemPrompt,
-    messages: [{ role: 'user', content: userPrompt }],
-  });
-  const headers = {
-    'Content-Type': 'application/json',
-    'x-api-key': ANTHROPIC_API_KEY,
-    'anthropic-version': '2023-06-01',
-  };
-  let lastError;
-  for (let attempt = 0; attempt < 3; attempt++) {
-    try {
-      const resp = await fetch(ANTHROPIC_URL, { method: 'POST', headers, body });
-      if (resp.ok) {
-        const data = await resp.json();
-        return data.content?.[0]?.text ?? '';
-      }
-      if (resp.status === 429 || resp.status >= 500) {
-        const retryAfter = parseInt(resp.headers.get('retry-after') || '0', 10);
-        const backoff = retryAfter > 0 ? retryAfter * 1000 : Math.min(2 ** attempt * 1000, 8000);
-        await new Promise(r => setTimeout(r, backoff));
-        lastError = new Error(`Anthropic API ${resp.status} (attempt ${attempt + 1}/3)`);
-        continue;
-      }
-      const text = await resp.text();
-      throw new Error(`Anthropic API ${resp.status}: ${text.slice(0, 200)}`);
-    } catch (e) {
-      lastError = e;
-      if (attempt === 2) break;
-      await new Promise(r => setTimeout(r, Math.min(2 ** attempt * 1000, 4000)));
-    }
-  }
-  throw lastError || new Error('Anthropic API failed after 3 attempts');
-}
-
-async function callClaude(systemPrompt, userPrompt, maxTokens = 1024) {
-  if (ANTHROPIC_API_KEY) {
-    return callClaudeViaApi(systemPrompt, userPrompt, maxTokens);
-  }
-  throw new Error('No LLM path available. Use /monomind:understand from inside Claude Code — the slash command orchestrates LLM work through the active session.');
-}
-
-function parseJson(text) {
-  try {
-    const fenceMatch = text.match(/```(?:json)?\s*\n?([\s\S]*?)\n?\s*```/);
-    const src = fenceMatch ? fenceMatch[1] : text;
-    const objMatch = src.match(/\{[\s\S]*\}|\[[\s\S]*\]/);
-    if (objMatch) return JSON.parse(objMatch[0]);
-  } catch {}
-  return null;
-}
-
-// Per-file analysis prompt (ported from llm-analyzer.ts)
-function buildFilePrompt(filePath, content, projectContext) {
-  const truncated = content.length > 6000 ? content.slice(0, 6000) + '\n... (truncated)' : content;
-  return `You are a code analysis assistant. Analyze the following source file and return a JSON object.
-
-Project context: ${projectContext}
-
-File: ${filePath}
-
-\`\`\`
-${truncated}
-\`\`\`
-
-Return a JSON object with exactly these fields:
-- "fileSummary": A concise summary of what this file does (1-2 sentences).
-- "tags": An array of 2-5 relevant tags (e.g., ["utility", "async", "api"]).
-- "complexity": One of "simple", "moderate", or "complex".
-- "functionSummaries": An object mapping each function/method name to a 1-sentence summary (top 5 only).
-- "classSummaries": An object mapping each class name to a 1-sentence summary.
-
-Respond ONLY with the JSON object, no additional text.`;
-}
-
-// Batch file analysis prompt (multiple files at once for efficiency)
-function buildBatchPrompt(files, projectContext) {
-  const fileBlocks = files.map(({ path, content }) => {
-    const truncated = content.length > 2000 ? content.slice(0, 2000) + '\n...' : content;
-    return `### ${path}\n\`\`\`\n${truncated}\n\`\`\``;
-  }).join('\n\n');
-
-  return `You are a code analysis assistant. Analyze the following source files and return a JSON object.
-
-Project context: ${projectContext}
-
-${fileBlocks}
-
-Return a JSON object where each key is the exact file path and the value is:
-- "fileSummary": 1-2 sentence summary of what the file does.
-- "tags": 2-5 relevant tags.
-- "complexity": "simple", "moderate", or "complex".
-- "functionSummaries": object of function name → 1-sentence summary (top 5 per file).
-- "classSummaries": object of class name → 1-sentence summary.
-
-Respond ONLY with the JSON object mapping file paths to their analysis.`;
-}
-
-// Layer detection prompt (ported from layer-detector.ts)
-function buildLayerPrompt(filePaths) {
-  const list = filePaths.slice(0, 200).map(f => `  - ${f}`).join('\n');
-  return `You are a software architecture analyst. Given these file paths, identify 3-8 logical architectural layers.
-
-${list}
-
-Return a JSON array where each element has:
-- "name": Short layer name (e.g., "API", "Data", "UI")
-- "description": What this layer does (1 sentence)
-- "filePatterns": Path prefixes that belong to this layer (e.g., ["src/routes/", "src/controllers/"])
-
-Every file should belong to exactly one layer. Respond ONLY with the JSON array.`;
-}
-
-// ── .understandignore support (ported from ignore-filter.ts) ────────────────
-const DEFAULT_IGNORE_PATTERNS = [
-  'node_modules/', '.git/', 'vendor/', 'venv/', '.venv/', '__pycache__/',
-  'dist/', 'build/', 'out/', 'coverage/', '.next/', '.cache/', '.turbo/', 'target/', 'obj/',
-  '*.lock', 'package-lock.json', 'yarn.lock', 'pnpm-lock.yaml',
-  '*.png', '*.jpg', '*.jpeg', '*.gif', '*.svg', '*.ico', '*.woff', '*.woff2',
-  '*.ttf', '*.eot', '*.mp3', '*.mp4', '*.pdf', '*.zip', '*.tar', '*.gz',
-  '*.min.js', '*.min.css', '*.map', '*.generated.*',
-  '.idea/', '.vscode/', '*.log',
-];
-
-function loadIgnorePatterns(dir) {
-  const patterns = [...DEFAULT_IGNORE_PATTERNS];
-  const locations = [
-    join(dir, '.understand-anything', '.understandignore'),
-    join(dir, '.understandignore'),
-  ];
-  for (const p of locations) {
-    if (existsSync(p)) {
-      try {
-        const lines = readFileSync(p, 'utf-8').split('\n')
-          .map(l => l.trim()).filter(l => l && !l.startsWith('#'));
-        patterns.push(...lines);
-      } catch {}
-    }
-  }
-  return patterns;
-}
-
-function makeIgnoreMatcher(patterns) {
-  return function isIgnored(filePath) {
-    const norm = filePath.replace(/\\/g, '/');
-    for (const pat of patterns) {
-      if (pat.startsWith('!')) continue; // negation — skip for simplicity
-      if (pat.endsWith('/')) {
-        // directory pattern
-        if (norm.includes('/' + pat.slice(0, -1) + '/') || norm.startsWith(pat)) return true;
-      } else if (pat.startsWith('*.')) {
-        // extension glob
-        if (norm.endsWith(pat.slice(1))) return true;
-      } else if (pat.includes('*')) {
-        // simple wildcard — match anywhere in path
-        const re = new RegExp('^' + pat.replace(/\./g, '\\.').replace(/\*/g, '.*') + '$');
-        if (re.test(norm) || re.test(norm.split('/').pop() || '')) return true;
-      } else {
-        // exact segment or prefix
-        if (norm === pat || norm.includes('/' + pat) || norm.startsWith(pat)) return true;
-      }
-    }
-    return false;
-  };
-}
-
-const _ignorePatterns = loadIgnorePatterns(projectDir);
-const isIgnoredByUser = makeIgnoreMatcher(_ignorePatterns);
-
-// ── Incremental mode helpers (ported from staleness.ts) ──────────────────────
-function getChangedFiles(dir, lastHash) {
-  const files = new Set();
-  function runGit(args) {
-    try {
-      const out = execFileSync('git', args, { cwd: dir, encoding: 'utf-8' });
-      for (const line of out.split('\n')) {
-        const trimmed = line.trim();
-        if (!trimmed) continue;
-        // `git status --porcelain` lines look like " M path/to/file" or "?? path"
-        // Strip the leading status code if present
-        const path = trimmed.length > 3 && trimmed[2] === ' ' ? trimmed.slice(3) : trimmed;
-        files.add(path);
-      }
-    } catch { /* git not available or no diff */ }
-  }
-  // Committed changes since last run
-  runGit(['diff', `${lastHash}..HEAD`, '--name-only']);
-  // Uncommitted working tree changes (staged + unstaged + untracked)
-  runGit(['status', '--porcelain']);
-  return [...files];
-}
-
-function getCurrentCommitHash(dir) {
-  try {
-    return execFileSync('git', ['rev-parse', 'HEAD'], { cwd: dir, encoding: 'utf-8' }).trim();
-  } catch {
-    return '';
-  }
-}
-
-// ── Language detection (slim port of language-registry.ts) ──────────────────
-const LANGUAGE_BY_EXT = {
-  '.ts': 'TypeScript', '.tsx': 'TypeScript',
-  '.js': 'JavaScript', '.jsx': 'JavaScript', '.mjs': 'JavaScript', '.cjs': 'JavaScript',
-  '.py': 'Python', '.pyi': 'Python',
-  '.rs': 'Rust', '.go': 'Go',
-  '.java': 'Java', '.kt': 'Kotlin', '.scala': 'Scala',
-  '.rb': 'Ruby', '.php': 'PHP', '.swift': 'Swift',
-  '.c': 'C', '.h': 'C', '.cpp': 'C++', '.cc': 'C++', '.hpp': 'C++', '.hxx': 'C++',
-  '.cs': 'C#', '.fs': 'F#',
-  '.sh': 'Shell', '.bash': 'Shell', '.zsh': 'Shell',
-  '.lua': 'Lua', '.r': 'R', '.dart': 'Dart', '.ex': 'Elixir', '.exs': 'Elixir',
-  '.sol': 'Solidity', '.zig': 'Zig', '.nim': 'Nim',
-  '.html': 'HTML', '.css': 'CSS', '.scss': 'SCSS', '.vue': 'Vue', '.svelte': 'Svelte',
-};
-
-function detectLanguages(fileNodes) {
-  const counts = new Map();
-  for (const n of fileNodes) {
-    if (!n.file_path) continue;
-    const lastDot = n.file_path.lastIndexOf('.');
-    if (lastDot === -1) continue;
-    const ext = n.file_path.slice(lastDot).toLowerCase();
-    const lang = LANGUAGE_BY_EXT[ext];
-    if (lang) counts.set(lang, (counts.get(lang) || 0) + 1);
-  }
-  // Return languages with >=3 files, sorted by count desc
-  return [...counts.entries()]
-    .filter(([, c]) => c >= 3)
-    .sort((a, b) => b[1] - a[1])
-    .map(([lang]) => lang);
-}
-
-// ── Framework detection (slim port of framework-registry.ts) ────────────────
-const FRAMEWORK_SIGNATURES = [
-  // [name, manifestFile, keywords[]]
-  ['React',        'package.json',     ['"react"']],
-  ['Next.js',      'package.json',     ['"next"']],
-  ['Vue',          'package.json',     ['"vue"']],
-  ['Svelte',       'package.json',     ['"svelte"']],
-  ['Angular',      'package.json',     ['"@angular/core"']],
-  ['Express',      'package.json',     ['"express"']],
-  ['Fastify',      'package.json',     ['"fastify"']],
-  ['NestJS',       'package.json',     ['"@nestjs/core"']],
-  ['Vite',         'package.json',     ['"vite"']],
-  ['Webpack',      'package.json',     ['"webpack"']],
-  ['TypeScript',   'package.json',     ['"typescript"']],
-  ['Claude Code',  'package.json',     ['"@anthropic-ai/claude-code"']],
-  ['Django',       'requirements.txt', ['django']],
-  ['Flask',        'requirements.txt', ['flask']],
-  ['FastAPI',      'requirements.txt', ['fastapi']],
-  ['Rails',        'Gemfile',          ['rails']],
-  ['Spring Boot',  'pom.xml',          ['spring-boot']],
-  ['Axum',         'Cargo.toml',       ['axum']],
-  ['Actix',        'Cargo.toml',       ['actix-web']],
-  ['Tokio',        'Cargo.toml',       ['tokio']],
-  ['Gin',          'go.mod',           ['gin-gonic/gin']],
-];
-
-function findManifests(dir, manifestName, maxDepth = 4) {
-  const fs = createRequire(import.meta.url)('node:fs');
-  const results = [];
-  function walk(d, depth) {
-    if (depth > maxDepth) return;
-    let entries;
-    try { entries = fs.readdirSync(d, { withFileTypes: true }); }
-    catch { return; }
-    for (const e of entries) {
-      if (e.name === 'node_modules' || e.name === 'dist' || e.name.startsWith('.')) continue;
-      const full = join(d, e.name);
-      if (e.isDirectory()) walk(full, depth + 1);
-      else if (e.name === manifestName) results.push(full);
-    }
-  }
-  walk(dir, 0);
-  return results;
-}
-
-function detectFrameworks(dir) {
-  const detected = [];
-  const seen = new Set();
-  // Cache manifest contents by name to avoid re-reading
-  const manifestCache = new Map();
-  for (const [name, manifest, keywords] of FRAMEWORK_SIGNATURES) {
-    if (seen.has(name)) continue;
-    let manifestPaths = manifestCache.get(manifest);
-    if (!manifestPaths) {
-      manifestPaths = findManifests(dir, manifest);
-      manifestCache.set(manifest, manifestPaths);
-    }
-    for (const p of manifestPaths) {
-      try {
-        const content = readFileSync(p, 'utf-8').toLowerCase();
-        if (keywords.some(k => content.includes(k.toLowerCase()))) {
-          detected.push(name);
-          seen.add(name);
-          break;
-        }
-      } catch {}
-    }
-  }
-  return detected;
-}
-
-// ── Onboarding guide builder (ported from onboard-builder.ts) ───────────────
-function buildOnboardingGuide(graphJson) {
-  const { project, nodes, layers, tour = [] } = graphJson;
-  const lines = [];
-
-  lines.push(`# ${project.name}`);
-  lines.push('');
-  if (project.description) {
-    lines.push(`> ${project.description}`);
-    lines.push('');
-  }
-  lines.push('| | |');
-  lines.push('|---|---|');
-  if (project.languages?.length) lines.push(`| **Languages** | ${project.languages.join(', ')} |`);
-  if (project.frameworks?.length) lines.push(`| **Frameworks** | ${project.frameworks.join(', ')} |`);
-  lines.push(`| **Components** | ${nodes.length} nodes |`);
-  lines.push(`| **Last Analyzed** | ${project.analyzedAt} |`);
-  lines.push('');
-
-  if (layers.length > 0) {
-    lines.push('## Architecture');
-    lines.push('');
-    lines.push('The project is organized into the following layers:');
-    lines.push('');
-    const nodeMap = new Map(nodes.map(n => [n.id, n]));
-    for (const layer of layers) {
-      lines.push(`### ${layer.name}`);
-      lines.push('');
-      if (layer.description) { lines.push(layer.description); lines.push(''); }
-      const members = (layer.nodeIds || []).map(id => nodeMap.get(id)?.name).filter(Boolean);
-      if (members.length > 0) { lines.push(`Key components: ${members.slice(0, 8).join(', ')}`); lines.push(''); }
-    }
-  }
-
-  if (tour.length > 0) {
-    lines.push('## Getting Started');
-    lines.push('');
-    lines.push('Follow this guided tour to understand the codebase:');
-    lines.push('');
-    const nodeMap = new Map(nodes.map(n => [n.id, n]));
-    for (const step of tour) {
-      lines.push(`### ${step.order}. ${step.title}`);
-      lines.push('');
-      lines.push(step.description);
-      lines.push('');
-      const stepNodes = (step.nodeIds || []).map(id => nodeMap.get(id)).filter(Boolean);
-      if (stepNodes.length > 0) {
-        lines.push('**Files to look at:**');
-        for (const node of stepNodes) {
-          if (node.filePath) lines.push(`- \`${node.filePath}\` — ${node.summary}`);
-        }
-        lines.push('');
-      }
-    }
-  }
-
-  const FILE_MAP_LIMIT = 50;
-  const HOTSPOT_LIMIT = 20;
-
-  const fileNodes = nodes.filter(n => n.type === 'file' && n.filePath && n.summary);
-  if (fileNodes.length > 0) {
-    lines.push('## File Map');
-    lines.push('');
-    if (fileNodes.length > FILE_MAP_LIMIT) {
-      lines.push(`Showing ${FILE_MAP_LIMIT} of ${fileNodes.length} analyzed files. See \`.understand/knowledge-graph.json\` for the full list.`);
-      lines.push('');
-    }
-    lines.push('| File | Purpose | Complexity |');
-    lines.push('|------|---------|------------|');
-    for (const node of fileNodes.slice(0, FILE_MAP_LIMIT)) {
-      const summary = (node.summary || '').replace(/\|/g, '\\|');
-      lines.push(`| \`${node.filePath}\` | ${summary} | ${node.complexity || 'moderate'} |`);
-    }
-    lines.push('');
-  }
-
-  const complexNodes = nodes.filter(n => n.complexity === 'complex');
-  if (complexNodes.length > 0) {
-    lines.push('## Complexity Hotspots');
-    lines.push('');
-    lines.push('These components are the most complex and deserve extra attention:');
-    if (complexNodes.length > HOTSPOT_LIMIT) {
-      lines.push('');
-      lines.push(`Showing top ${HOTSPOT_LIMIT} of ${complexNodes.length} complex components.`);
-    }
-    lines.push('');
-    for (const node of complexNodes.slice(0, HOTSPOT_LIMIT)) {
-      lines.push(`- **${node.name}** (${node.type}): ${node.summary || ''}`);
-    }
-    lines.push('');
-  }
-
-  lines.push('---');
-  lines.push('');
-  lines.push(`*Generated by [monomind](https://github.com/monoes/monomind) from knowledge graph v${graphJson.version}*`);
-  lines.push('');
-
-  return lines.join('\n');
-}
-
-// ── File reading with graceful skip ─────────────────────────────────────────
-function readFileSafe(absPath) {
-  try {
-    const content = readFileSync(absPath, 'utf-8');
-    return content;
-  } catch {
-    return null;
-  }
-}
-
-const SKIP_EXTENSIONS = new Set([
-  '.png', '.jpg', '.jpeg', '.gif', '.svg', '.ico', '.webp',
-  '.pdf', '.zip', '.tar', '.gz', '.wasm', '.map',
-  '.lock', '.lockb', '.db', '.sqlite', '.bin', '.exe',
-]);
-function shouldAnalyze(filePath) {
-  if (!filePath) return false;
-  const ext = '.' + filePath.split('.').pop()?.toLowerCase();
-  if (SKIP_EXTENSIONS.has(ext)) return false;
-  if (isIgnoredByUser(filePath)) return false;
-  return true;
-}
-
-// ── Main ─────────────────────────────────────────────────────────────────────
-async function main() {
-  console.log('[understand] Starting semantic enrichment for', projectDir);
-
-  if (!existsSync(dbPathArg)) {
-    console.error('[understand] monograph.db not found at', dbPathArg);
-    console.error('[understand] Build the graph first: npx monomind monograph build');
-    process.exit(1);
-  }
-
-  const mg = resolveMonograph();
-  if (!mg) {
-    console.error('[understand] Cannot find @monoes/monograph. Run: npm install @monoes/monograph');
-    process.exit(1);
-  }
-
-  // Detect non-local filesystems where better-sqlite3 can't acquire file locks
-  // (NFS, SMB, FUSE volumes — typically /Volumes/* on macOS or /mnt/* on Linux).
-  // When detected, copy the DB to /tmp, work there, copy back atomically at end.
-  let workingDbPath = dbPathArg;
-  let dbWasShadowed = false;
-  let originalDbPath = dbPathArg;
-  const isNetworkFs = /^\/Volumes\//.test(dbPathArg) ||
-                       /^\/mnt\//.test(dbPathArg) ||
-                       /^\/media\//.test(dbPathArg) ||
-                       /^\\\\/.test(dbPathArg);  // UNC paths on Windows
-  if (isNetworkFs && !dryRun) {
-    const os = await import('node:os');
-    const crypto = await import('node:crypto');
-    const tmpName = 'monograph-work-' + crypto.randomBytes(6).toString('hex') + '.db';
-    workingDbPath = join(os.tmpdir(), tmpName);
-    try {
-      console.log(`[understand] DB is on a non-local filesystem (${dbPathArg}). Copying to ${workingDbPath} to avoid SQLite lock issues...`);
-      const { copyFileSync } = await import('node:fs');
-      copyFileSync(originalDbPath, workingDbPath);
-      dbWasShadowed = true;
-    } catch (e) {
-      console.warn(`[understand] Could not copy to /tmp (${e.message}). Trying in place...`);
-      workingDbPath = dbPathArg;
-    }
-  }
-
-  // Retry openDb against SQLite BUSY when monograph is building in the background
-  let db;
-  for (let attempt = 0; attempt < 5; attempt++) {
-    try { db = mg.openDb(workingDbPath); break; }
-    catch (e) {
-      if (attempt === 4) throw e;
-      const msg = String(e?.message || e);
-      if (!/busy|locked/i.test(msg)) throw e;
-      console.log(`[understand] monograph.db busy, retrying in ${(attempt + 1) * 2}s...`);
-      await new Promise(r => setTimeout(r, (attempt + 1) * 2000));
-    }
-  }
-
-  // Ensure properties column exists
-  try { db.prepare(`ALTER TABLE nodes ADD COLUMN properties TEXT`).run(); } catch {}
-  try { db.prepare(`CREATE TABLE IF NOT EXISTS communities (id INTEGER PRIMARY KEY, label TEXT, size INTEGER NOT NULL DEFAULT 0, cohesion_score REAL NOT NULL DEFAULT 0.0)`).run(); } catch {}
-
-  // ── Import analyses from stdin (slash-command write-back path) ───────────
-  // When Claude Code's /monomind:understand has collected per-file summaries
-  // through the active session, it pipes them back via:
-  //   echo "$ANALYSES_JSON" | node understand-analyze.mjs --import-analyses-stdin
-  // The JSON shape: { "analyses": [{ "id": <nodeId>, "fileSummary": "...", "tags": [...], ... }] }
-  if (importAnalysesStdin) {
-    const stdinText = await new Promise((resolve) => {
-      let buf = '';
-      process.stdin.setEncoding('utf-8');
-      process.stdin.on('data', c => { buf += c; });
-      process.stdin.on('end', () => resolve(buf));
-      process.stdin.on('error', () => resolve(buf));
-      // Bail out after 30 s so the slash command never hangs
-      setTimeout(() => resolve(buf), 30000);
-      process.stdin.resume();
-    });
-    let parsed = null;
-    try { parsed = JSON.parse(stdinText); } catch {}
-    const analyses = (parsed && Array.isArray(parsed.analyses)) ? parsed.analyses : [];
-    if (analyses.length === 0) {
-      console.error('[understand] --import-analyses-stdin: no analyses found in stdin JSON');
-      mg.closeDb(db);
-      process.exit(1);
-    }
-    // Resolve each analysis item to a DB integer node id.
-    // graph.json nodes have id='file:<path>' (synthetic); the real PK is an integer.
-    // Accept: analysis.dbId (integer), analysis.filePath, or derive path from analysis.id.
-    const lookupByPath = db.prepare(`SELECT id, properties FROM nodes WHERE file_path=? OR file_path=? LIMIT 1`);
-    const lookupById   = db.prepare(`SELECT id, properties FROM nodes WHERE id=? LIMIT 1`);
-    const updateNode   = db.prepare(`UPDATE nodes SET properties = ? WHERE id = ?`);
-    let written = 0;
-    const tx = db.transaction(() => {
-      for (const analysis of analyses) {
-        if (!analysis) continue;
-        let nodeRow = null;
-        // 1. Prefer explicit integer dbId (added by newer graph.json emitter)
-        if (analysis.dbId != null) {
-          nodeRow = lookupById.get(analysis.dbId);
-        }
-        // 2. Fall back to filePath from graph.json node
-        if (!nodeRow && analysis.filePath) {
-          const rel = analysis.filePath.startsWith('/') ? relative(projectDir, analysis.filePath) : analysis.filePath;
-          nodeRow = lookupByPath.get(analysis.filePath, rel);
-        }
-        // 3. Derive path from synthetic id ('file:<path>')
-        if (!nodeRow && analysis.id && String(analysis.id).startsWith('file:')) {
-          const derivedPath = String(analysis.id).slice(5);
-          const rel = derivedPath.startsWith('/') ? relative(projectDir, derivedPath) : derivedPath;
-          nodeRow = lookupByPath.get(derivedPath, rel);
-        }
-        if (!nodeRow) continue;
-        const existing = (() => { try { return nodeRow.properties ? JSON.parse(nodeRow.properties) : {}; } catch { return {}; } })();
-        const merged = {
-          ...existing,
-          ...(analysis.fileSummary       ? { summary:             analysis.fileSummary }            : {}),
-          ...(analysis.tags              ? { tags:                 analysis.tags }                   : {}),
-          ...(analysis.complexity        ? { complexity:           analysis.complexity }              : {}),
-          ...(analysis.functionSummaries ? { functionSummaries:    analysis.functionSummaries }     : {}),
-          ...(analysis.classSummaries    ? { classSummaries:       analysis.classSummaries }        : {}),
-          ua_analyzed_at: new Date().toISOString(),
-        };
-        updateNode.run(JSON.stringify(merged), nodeRow.id);
-        written++;
-      }
-    });
-    tx();
-    // Rebuild FTS so summaries are immediately searchable
-    try { db.prepare(`INSERT INTO nodes_fts(nodes_fts) VALUES('rebuild')`).run(); } catch {}
-
-    // Validate write-back: count nodes that now have a readable summary in properties
-    let enrichedCount = 0;
-    try {
-      const row = db.prepare(
-        `SELECT COUNT(*) AS c FROM nodes WHERE json_extract(properties, '$.summary') IS NOT NULL AND length(json_extract(properties, '$.summary')) > 5`
-      ).get();
-      enrichedCount = row ? row.c : 0;
-    } catch (_) {}
-    console.log(`[understand] Imported ${written} analyses from stdin. FTS rebuilt.`);
-    console.log(`[understand] Validation: ${enrichedCount} node(s) now have LLM summaries readable via json_extract.`);
-    if (written > 0 && enrichedCount < written) {
-      console.warn(`[understand] WARNING: only ${enrichedCount} of ${written} imported analyses are queryable. Some properties may not have committed — check if properties column is TEXT.`);
-    }
-    mg.closeDb(db);
-    return;
-  }
-
-  // ── Load all file nodes ──────────────────────────────────────────────────
-  let fileNodes = db.prepare(`SELECT id, name, file_path, properties FROM nodes WHERE label = 'File' AND file_path IS NOT NULL`).all();
-  console.log(`[understand] Found ${fileNodes.length} file nodes in DB`);
-
-  // ── Layers-only mode ─────────────────────────────────────────────────────
-  if (layersOnly) {
-    console.log('[understand] Layers-only mode — skipping per-file analysis');
-    await detectAndWriteLayers(db, fileNodes, noLlm, dryRun);
-    mg.closeDb(db);
-    console.log('[understand] Done (layers-only)');
-    return;
-  }
-
-  // ── Incremental mode: only re-analyze changed files ─────────────────────
-  let changedFileSet = null; // null means "analyze all"
-  if (incremental) {
-    let lastHash = '';
-    try {
-      const row = db.prepare(`SELECT value FROM index_meta WHERE key = 'ua_last_commit'`).get();
-      lastHash = row?.value || '';
-    } catch {}
-    if (lastHash) {
-      const changed = getChangedFiles(projectDir, lastHash);
-      if (changed.length > 0) {
-        changedFileSet = new Set(changed);
-        console.log(`[understand] Incremental mode: ${changed.length} files changed since ${lastHash.slice(0, 8)}`);
-      } else {
-        console.log('[understand] Incremental mode: no changes detected since last run — skipping analysis');
-        mg.closeDb(db);
-        return;
-      }
-    } else {
-      console.log('[understand] Incremental mode: no previous commit hash found — running full analysis');
-    }
-  }
-
-  // ── Filter files that need analysis ─────────────────────────────────────
-  const toAnalyze = fileNodes.filter(n => {
-    if (!shouldAnalyze(n.file_path)) return false;
-    if (changedFileSet) {
-      // Match by relative or absolute path
-      const rel = n.file_path.startsWith('/') ? relative(projectDir, n.file_path) : n.file_path;
-      return changedFileSet.has(rel) || changedFileSet.has(n.file_path);
-    }
-    return true;
-  });
-  const limit = maxFiles > 0 ? Math.min(maxFiles, toAnalyze.length) : toAnalyze.length;
-  const batch = toAnalyze.slice(0, limit);
-  console.log(`[understand] Analyzing ${batch.length} files (${toAnalyze.length - batch.length} skipped/already enriched)`);
-
-  // LLM path determined automatically. The script does NOT advise on
-  // credentials — orchestration is the slash command's job.
-  const llmPath = ANTHROPIC_API_KEY ? 'api' : 'none';
-  if (llmPath === 'none' && !noLlm) {
-    console.log('[understand] Running in heuristic mode. For per-file summaries,');
-    console.log('[understand] use /monomind:understand from inside Claude Code — the slash');
-    console.log('[understand] command orchestrates summarization through the active session.');
-  }
-  const useLlm = !noLlm && llmPath !== 'none';
-
-  // ── Get project context for better prompts ────────────────────────────────
-  let projectContext = `Project directory: ${basename(projectDir)}`;
-  try {
-    const pkgPath = join(projectDir, 'package.json');
-    if (existsSync(pkgPath)) {
-      const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
-      projectContext = `${pkg.name || basename(projectDir)}: ${pkg.description || ''}`.trim();
-    }
-  } catch {}
-
-  // ── Per-file LLM analysis ────────────────────────────────────────────────
-  const analysisMap = {}; // file_path → { fileSummary, tags, complexity, functionSummaries, classSummaries }
-
-  if (useLlm && batch.length > 0) {
-    const system = 'You are an expert code analysis assistant. Always respond with valid JSON only.';
-    const chunks = [];
-    for (let i = 0; i < batch.length; i += batchSize) chunks.push(batch.slice(i, i + batchSize));
-
-    let done = 0;
-    for (const chunk of chunks) {
-      // Read file contents
-      const files = chunk
-        .map(n => {
-          const absPath = n.file_path.startsWith('/') ? n.file_path : join(projectDir, n.file_path);
-          const content = readFileSafe(absPath);
-          return content ? { path: n.file_path, content, nodeId: n.id } : null;
-        })
-        .filter(Boolean);
-
-      if (files.length === 0) { done += chunk.length; continue; }
-
-      process.stdout.write(`\r[understand] Analyzing files ${done + 1}–${Math.min(done + files.length, batch.length)} / ${batch.length}...`);
-
-      try {
-        let text;
-        if (files.length === 1) {
-          text = await callClaude(system, buildFilePrompt(files[0].path, files[0].content, projectContext));
-          const parsed = parseJson(text);
-          if (parsed) analysisMap[files[0].path] = parsed;
-        } else {
-          text = await callClaude(system, buildBatchPrompt(files, projectContext), 2048);
-          const parsed = parseJson(text);
-          if (parsed && typeof parsed === 'object') {
-            for (const [fp, analysis] of Object.entries(parsed)) {
-              if (analysis && typeof analysis === 'object') analysisMap[fp] = analysis;
-            }
-          }
-        }
-      } catch (e) {
-        console.warn(`\n[understand] API error for batch at ${done}: ${e.message}`);
-      }
-
-      done += files.length;
-      // Polite rate limiting
-      if (chunks.indexOf(chunk) < chunks.length - 1) await new Promise(r => setTimeout(r, 300));
-    }
-    console.log(`\n[understand] LLM analysis complete: ${Object.keys(analysisMap).length} files analyzed`);
-  }
-
-  // ── Write analysis back to DB ─────────────────────────────────────────────
-  const updateNode = db.prepare(`UPDATE nodes SET properties = ? WHERE id = ?`);
-  let written = 0;
-
-  if (!dryRun) {
-    const tx = db.transaction(() => {
-      for (const node of batch) {
-        const existing = node.properties ? (() => { try { return JSON.parse(node.properties); } catch { return {}; } })() : {};
-        const llmData  = analysisMap[node.file_path] || {};
-        const merged = {
-          ...existing,
-          ...(llmData.fileSummary   ? { summary:     llmData.fileSummary }   : {}),
-          ...(llmData.tags          ? { tags:         llmData.tags }          : {}),
-          ...(llmData.complexity    ? { complexity:   llmData.complexity }    : {}),
-          ...(llmData.languageNotes ? { languageNotes: llmData.languageNotes } : {}),
-          ...(llmData.functionSummaries ? { functionSummaries: llmData.functionSummaries } : {}),
-          ...(llmData.classSummaries    ? { classSummaries:    llmData.classSummaries }    : {}),
-          ua_analyzed_at: new Date().toISOString(),
-        };
-        updateNode.run(JSON.stringify(merged), node.id);
-        written++;
-      }
-    });
-    tx();
-    console.log(`[understand] Wrote enrichment data to ${written} nodes`);
-  } else {
-    console.log(`[understand] DRY RUN — would update ${batch.length} nodes`);
-  }
-
-  // ── Layer detection ──────────────────────────────────────────────────────
-  const layers = await detectAndWriteLayers(db, fileNodes, noLlm || !useLlm, dryRun, projectDir);
-
-  // ── Emit graph.json (for compatibility with ua-import.mjs) ──────────────
-  const graphJson = buildGraphJson(projectDir, fileNodes, analysisMap, layers);
-  const outputDir = dirname(outputArg);
-  if (!dryRun) {
-    mkdirSync(outputDir, { recursive: true });
-    writeFileSync(outputArg, JSON.stringify(graphJson, null, 2), 'utf-8');
-    console.log(`[understand] graph.json written to ${outputArg}`);
-  }
-
-  // ── Rebuild FTS ──────────────────────────────────────────────────────────
-  if (!dryRun) {
-    try {
-      db.prepare(`INSERT INTO nodes_fts(nodes_fts) VALUES('rebuild')`).run();
-      console.log('[understand] FTS index rebuilt');
-    } catch {}
-  }
-
-  // ── Update index_meta ────────────────────────────────────────────────────
-  if (!dryRun) {
-    const upsertMeta = db.prepare(
-      `INSERT INTO index_meta (key, value) VALUES (?, ?)
-       ON CONFLICT(key) DO UPDATE SET value=excluded.value`
-    );
-    upsertMeta.run('ua_analyzed_at', new Date().toISOString());
-    const currentHash = getCurrentCommitHash(projectDir);
-    if (currentHash) upsertMeta.run('ua_last_commit', currentHash);
-  }
-
-  mg.closeDb(db);
-
-  // ── Onboarding guide ─────────────────────────────────────────────────────
-  let onboardWritten = false;
-  if (onboard && !dryRun) {
-    const guide = buildOnboardingGuide(graphJson);
-    writeFileSync(onboardOut, guide, 'utf-8');
-    onboardWritten = true;
-    console.log(`[understand] Onboarding guide written to ${relative(CWD, onboardOut)}`);
-  }
-
-  // ── Final report ─────────────────────────────────────────────────────────
-  const title = dryRun
-    ? '║  /monomind:understand — DRY RUN (no writes)       ║'
-    : '║  /monomind:understand — Enrichment Complete       ║';
-  console.log('\n╔══════════════════════════════════════════════════╗');
-  console.log(title);
-  console.log('╠══════════════════════════════════════════════════╣');
-  console.log(`║  DB:              ${relative(CWD, dbPathArg).padEnd(31)}║`);
-  console.log(`║  Nodes enriched:  ${String(written).padEnd(31)}║`);
-  console.log(`║  Communities:     ${String(layers.length).padEnd(31)}║`);
-  console.log(`║  graph.json:      ${relative(CWD, outputArg).padEnd(31)}║`);
-  if (onboardWritten) {
-    console.log(`║  ONBOARDING.md:   ${relative(CWD, onboardOut).padEnd(31)}║`);
-  }
-  console.log('╚══════════════════════════════════════════════════╝');
-
-  // Copy DB back if we shadowed it on /tmp due to network FS
-  if (dbWasShadowed && !dryRun) {
-    try {
-      const { copyFileSync, unlinkSync } = await import('node:fs');
-      try { db.close(); } catch {}
-      console.log(`[understand] Copying enriched DB back to ${originalDbPath}...`);
-      copyFileSync(workingDbPath, originalDbPath);
-      try { unlinkSync(workingDbPath); } catch {}
-    } catch (e) {
-      console.error(`[understand] Failed to copy DB back: ${e.message}`);
-      console.error(`[understand] Enriched DB is at ${workingDbPath} — copy manually if needed.`);
-    }
-  }
-}
-
-// ── Detect layers and write communities to DB ────────────────────────────────
-async function detectAndWriteLayers(db, fileNodes, forceHeuristic, dryRun, dir) {
-  let layers;
-
-  if (!forceHeuristic && ANTHROPIC_API_KEY) {
-    console.log('[understand] Detecting architectural layers via LLM...');
-    const filePaths = fileNodes.map(n => n.file_path).filter(Boolean);
-    try {
-      const system = 'You are a software architecture expert. Respond with valid JSON only.';
-      const text   = await callClaude(system, buildLayerPrompt(filePaths), 1024);
-      const parsed = parseJson(text);
-      if (Array.isArray(parsed) && parsed.length > 0) {
-        layers = applyLlmLayers(fileNodes, parsed);
-        console.log(`[understand] LLM detected ${layers.length} layers`);
-      }
-    } catch (e) {
-      console.warn('[understand] LLM layer detection failed, falling back to heuristic:', e.message);
-    }
-  }
-
-  if (!layers) {
-    layers = detectLayersHeuristic(fileNodes);
-    console.log(`[understand] Heuristic layer detection: ${layers.length} layers`);
-  }
-
-  if (!dryRun) {
-    let communityIdx = 1000;
-    const upsertCommunity = db.prepare(
-      `INSERT INTO communities (id, label, size, cohesion_score)
-       VALUES (?, ?, ?, 0.8)
-       ON CONFLICT(id) DO UPDATE SET label=excluded.label, size=excluded.size`
-    );
-    const updateNodeCommunity = db.prepare(`UPDATE nodes SET community_id = ? WHERE id = ?`);
-
-    const tx = db.transaction(() => {
-      for (const layer of layers) {
-        upsertCommunity.run(communityIdx, layer.name, layer.nodeIds.length);
-        for (const nodeId of layer.nodeIds) {
-          updateNodeCommunity.run(communityIdx, nodeId);
-        }
-        communityIdx++;
-      }
-    });
-    tx();
-    console.log(`[understand] Wrote ${layers.length} communities to DB`);
-  }
-
-  return layers;
-}
-
-// Apply LLM-suggested layer patterns to file nodes (ported from applyLLMLayers)
-function applyLlmLayers(fileNodes, llmLayers) {
-  const map = new Map();
-  for (const l of llmLayers) map.set(l.name, []);
-
-  for (const node of fileNodes) {
-    if (!node.file_path) {
-      const other = map.get('Other') ?? [];
-      other.push(node.id);
-      map.set('Other', other);
-      continue;
-    }
-    const norm = node.file_path.replace(/\\/g, '/');
-    let assigned = false;
-    for (const l of llmLayers) {
-      for (const pattern of (l.filePatterns || [])) {
-        if (norm.startsWith(pattern) || norm.includes('/' + pattern)) {
-          map.get(l.name).push(node.id);
-          assigned = true;
-          break;
-        }
-      }
-      if (assigned) break;
-    }
-    if (!assigned) {
-      const other = map.get('Other') ?? [];
-      other.push(node.id);
-      map.set('Other', other);
-    }
-  }
-
-  const layers = [];
-  for (const [name, nodeIds] of map) {
-    if (nodeIds.length === 0) continue;
-    const l = llmLayers.find(x => x.name === name);
-    layers.push({ id: toLayerId(name), name, description: l?.description ?? 'Uncategorized', nodeIds });
-  }
-  return layers;
-}
-
-// Build a KnowledgeGraph-compatible graph.json for ua-import compatibility
-function buildGraphJson(dir, fileNodes, analysisMap, layers) {
-  const projectName = basename(dir);
-  const nodes = fileNodes.map(n => {
-    const a = analysisMap[n.file_path] || {};
-    return {
-      id: 'file:' + (n.file_path || n.name),
-      dbId: n.id,          // integer PK — use this in --import-analyses-stdin payloads
-      type: 'file',
-      name: n.name,
-      filePath: n.file_path,
-      summary: a.fileSummary || '',
-      tags: a.tags || [],
-      complexity: a.complexity || 'moderate',
-    };
-  });
-
-  // Project metadata
-  let description = '';
-  try {
-    const pkgPath = join(dir, 'package.json');
-    if (existsSync(pkgPath)) {
-      const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
-      description = pkg.description || '';
-    }
-  } catch {}
-
-  return {
-    version: '2.7.0',
-    kind: 'codebase',
-    project: {
-      name: projectName,
-      languages: detectLanguages(fileNodes),
-      frameworks: detectFrameworks(dir),
-      description,
-      analyzedAt: new Date().toISOString(),
-      gitCommitHash: getCurrentCommitHash(dir),
-    },
-    nodes,
-    edges: [],
-    layers: layers.map(l => ({ id: l.id, name: l.name, description: l.description, nodeIds: l.nodeIds })),
-    tour: [],
-  };
-}
-
-main().catch(e => {
-  console.error('[understand] Fatal error:', e.message);
-  process.exit(1);
-});