monomind 1.9.17 → 1.10.0

package/packages/@monomind/cli/bundled-graph/dist/src/detect.js

@@ -1,195 +0,0 @@
-import { readdirSync, readFileSync, statSync } from 'fs';
-import { join, extname, relative, dirname } from 'path';
-const DEFAULT_MAX_FILE_SIZE = 500 * 1024; // 500KB
-const EXCLUDED_DIRS = new Set([
-    'node_modules', '.git', 'dist', 'build', '.monomind',
-    '__pycache__', '.pytest_cache', 'target', '.cache',
-]);
-// Maps file extension to [fileType, language]
-const EXTENSION_MAP = {
-    '.ts': ['code', 'typescript'], '.tsx': ['code', 'typescript'],
-    '.mts': ['code', 'typescript'], '.cts': ['code', 'typescript'],
-    '.js': ['code', 'javascript'], '.jsx': ['code', 'javascript'],
-    '.mjs': ['code', 'javascript'], '.cjs': ['code', 'javascript'],
-    '.py': ['code', 'python'], '.go': ['code', 'go'],
-    '.rs': ['code', 'rust'], '.java': ['code', 'java'],
-    '.c': ['code', 'c'], '.cpp': ['code', 'cpp'],
-    '.h': ['code', 'c'], '.cs': ['code', 'csharp'],
-    '.rb': ['code', 'ruby'], '.php': ['code', 'php'],
-    '.swift': ['code', 'swift'], '.kt': ['code', 'kotlin'],
-    '.scala': ['code', 'scala'], '.md': ['document', 'markdown'],
-    '.txt': ['document', 'text'], '.rst': ['document', 'rst'],
-};
-// Patterns matching filenames/paths that may contain credentials or secrets.
-// Matched against both the basename and the relative path.
-const SECURITY_SENSITIVE_PATTERNS = [
-    // .env files
-    /^\.env(\.|$)/i,
-    /[/\\]\.env(\.|$)/i,
-    // PEM / key files
-    /\.(pem|key|p12|pfx)$/i,
-    // SSH private keys
-    /\b(id_rsa|id_dsa|id_ecdsa|id_ed25519)(\.[^/\\]*)?$/i,
-    // Credential / secret JSON / YAML
-    /\bcredentials\.json$/i,
-    /\bsecrets?\.(json|ya?ml)$/i,
-    // AWS
-    /\baws-credentials$/i,
-    /[/\\]\.aws[/\\]credentials$/i,
-    // GCP / Firebase
-    /\bservice-?account\.json$/i,
-    /\bclient_secret\.json$/i,
-    /\bgoogle-credentials\.json$/i,
-    /\bfirebase[^/\\]*\.json$/i,
-    // Auth-related
-    /\bprivate\.key$/i,
-    /\bprivate_key\.json$/i,
-    /\.htpasswd$/i,
-    /\bshadow$/i,
-    /\bvault-token$/i,
-    /\.token$/i,
-    /\bauth\.json$/i,
-    // Package auth files
-    /\.npmrc$/i,
-    /\.pypirc$/i,
-    /\bnetrc$/i,
-    /\.pgpass$/i,
-];
-/** Returns true if the given basename or relative path matches any security-sensitive pattern. */
-function isSecuritySensitive(basename, relPath) {
-    return SECURITY_SENSITIVE_PATTERNS.some((re) => re.test(basename) || re.test(relPath));
-}
-/**
- * Converts a .graphifyignore pattern line into a RegExp.
- * Escapes regex special chars then converts `*` to `.*`.
- */
-function patternToRegex(pattern) {
-    const escaped = pattern.replace(/[.+^${}()|[\]\\]/g, '\\$&').replace(/\*/g, '.*');
-    return new RegExp(escaped);
-}
-/**
- * Walks up the directory tree from rootPath to the filesystem root,
- * collecting patterns from any `.graphifyignore` files found along the way.
- * Lines beginning with `#` are comments; blank lines are skipped.
- * Returns the combined list of pattern strings (closest dir first).
- */
-export function loadIgnorePatterns(rootPath) {
-    const patterns = [];
-    let current = rootPath;
-    while (true) {
-        const candidate = join(current, '.graphifyignore');
-        try {
-            const contents = readFileSync(candidate, 'utf8');
-            for (const line of contents.split(/\r?\n/)) {
-                const trimmed = line.trim();
-                if (trimmed && !trimmed.startsWith('#')) {
-                    patterns.push(trimmed);
-                }
-            }
-        }
-        catch {
-            // File does not exist or is unreadable at this level — continue walking up
-        }
-        const parent = dirname(current);
-        if (parent === current)
-            break; // reached filesystem root
-        current = parent;
-    }
-    return patterns;
-}
-/**
- * Recursively collects and classifies all files under rootPath, applying
- * exclusion rules for directories, file size limits, security-sensitive filenames,
- * .graphifyignore patterns, and optional language filtering from BuildOptions.
- */
-export function collectFiles(rootPath, options = {}) {
-    const maxFileSizeBytes = options.maxFileSizeBytes ?? DEFAULT_MAX_FILE_SIZE;
-    const codeOnly = options.codeOnly ?? false;
-    const languageFilter = options.languages ? new Set(options.languages) : null;
-    const excludePatterns = options.excludePatterns ?? [];
-    // Load .graphifyignore patterns and compile to regexes
-    const ignorePatternStrings = loadIgnorePatterns(rootPath);
-    const ignoreRegexes = ignorePatternStrings.map(patternToRegex);
-    const results = [];
-    function walkDir(dirPath) {
-        let entries;
-        try {
-            entries = readdirSync(dirPath);
-        }
-        catch {
-            return;
-        }
-        for (const entry of entries) {
-            const fullPath = join(dirPath, entry);
-            const relPath = relative(rootPath, fullPath);
-            // Check against caller-supplied exclude patterns
-            if (excludePatterns.some((pat) => relPath.includes(pat)))
-                continue;
-            // Check against .graphifyignore patterns
-            if (ignoreRegexes.some((re) => re.test(relPath)))
-                continue;
-            let stat;
-            try {
-                stat = statSync(fullPath);
-            }
-            catch {
-                continue;
-            }
-            if (stat.isDirectory()) {
-                if (EXCLUDED_DIRS.has(entry))
-                    continue;
-                walkDir(fullPath);
-                continue;
-            }
-            if (!stat.isFile())
-                continue;
-            if (stat.size > maxFileSizeBytes)
-                continue;
-            // Skip security-sensitive files
-            if (isSecuritySensitive(entry, relPath))
-                continue;
-            const ext = extname(entry).toLowerCase();
-            const mapping = EXTENSION_MAP[ext];
-            if (!mapping)
-                continue;
-            const [fileType, language] = mapping;
-            if (codeOnly && fileType !== 'code')
-                continue;
-            if (languageFilter && !languageFilter.has(language))
-                continue;
-            results.push({ path: fullPath, fileType, language, sizeBytes: stat.size });
-        }
-    }
-    walkDir(rootPath);
-    return results;
-}
-/**
- * Analyses a collected file corpus and returns a list of human-readable warning
- * strings describing potential issues. Returns an empty array when the corpus
- * looks healthy.
- */
-export function corpusHealth(files) {
-    const warnings = [];
-    const codeFiles = files.filter((f) => f.fileType === 'code');
-    const docFiles = files.filter((f) => f.fileType === 'document');
-    const totalSize = files.reduce((sum, f) => sum + f.sizeBytes, 0);
-    if (codeFiles.length < 5) {
-        warnings.push(`Corpus is very small (${codeFiles.length} code files). Graph may be sparse.`);
-    }
-    if (totalSize < 50_000) {
-        const kb = Math.round(totalSize / 1024);
-        warnings.push(`Corpus total size is very small (~${kb}KB). Consider including more source files.`);
-    }
-    if (totalSize > 50_000_000) {
-        const mb = Math.round(totalSize / (1024 * 1024));
-        warnings.push(`Corpus is very large (~${mb}MB). Build may be slow. Consider using codeOnly or excludePatterns.`);
-    }
-    if (docFiles.length === 0) {
-        warnings.push('No documentation files found. Graph will have no document nodes.');
-    }
-    if (files.length > 0 && docFiles.length / files.length > 0.8) {
-        warnings.push('Corpus is mostly documentation. Consider codeOnly: true for a code-focused graph.');
-    }
-    return warnings;
-}
-//# sourceMappingURL=detect.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/detect.js.map

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package/packages/@monomind/cli/bundled-graph/dist/src/export.d.ts

@@ -1,21 +0,0 @@
-import Graph from 'graphology';
-/**
- * Serialize a graphology graph to disk as a JSON file.
- * Creates the output directory if it does not exist.
- * Returns the absolute path to the written file.
- */
-export declare function saveGraph(graph: Graph, outputDir: string, projectPath: string): string;
-/**
- * Deserialize a graph from a previously saved JSON file.
- * Silently skips edges whose endpoints are missing from the node list.
- */
-export declare function loadGraph(graphPath: string): Graph;
-/**
- * Return true when a graph.json already exists in the given output directory.
- */
-export declare function graphExists(outputDir: string): boolean;
-/**
- * Return the canonical path to graph.json inside an output directory.
- */
-export declare function getGraphPath(outputDir: string): string;
-//# sourceMappingURL=export.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/export.d.ts.map

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package/packages/@monomind/cli/bundled-graph/dist/src/export.js

@@ -1,68 +0,0 @@
-import { existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';
-import { join } from 'path';
-import Graph from 'graphology';
-/**
- * Serialize a graphology graph to disk as a JSON file.
- * Creates the output directory if it does not exist.
- * Returns the absolute path to the written file.
- */
-export function saveGraph(graph, outputDir, projectPath) {
-    mkdirSync(outputDir, { recursive: true });
-    const graphPath = join(outputDir, 'graph.json');
-    const nodes = [];
-    graph.forEachNode((id, attrs) => nodes.push({ id, ...attrs }));
-    const links = [];
-    graph.forEachEdge((_, attrs, source, target) => links.push({ source, target, ...attrs }));
-    const serialized = {
-        version: '1.0.0',
-        builtAt: new Date().toISOString(),
-        projectPath,
-        nodes,
-        links,
-        directed: graph.type === 'directed',
-        multigraph: graph.multi,
-    };
-    writeFileSync(graphPath, JSON.stringify(serialized, null, 2), 'utf-8');
-    return graphPath;
-}
-/**
- * Deserialize a graph from a previously saved JSON file.
- * Silently skips edges whose endpoints are missing from the node list.
- */
-export function loadGraph(graphPath) {
-    const raw = readFileSync(graphPath, 'utf-8');
-    const data = JSON.parse(raw);
-    const graph = new Graph({
-        type: data.directed ? 'directed' : 'undirected',
-        multi: false,
-    });
-    for (const node of data.nodes) {
-        const { id, ...attrs } = node;
-        graph.addNode(id, attrs);
-    }
-    for (const link of data.links) {
-        const { source, target, ...attrs } = link;
-        if (!graph.hasNode(source) || !graph.hasNode(target))
-            continue;
-        try {
-            graph.addEdge(source, target, attrs);
-        }
-        catch {
-            // Duplicate edge — ignore
-        }
-    }
-    return graph;
-}
-/**
- * Return true when a graph.json already exists in the given output directory.
- */
-export function graphExists(outputDir) {
-    return existsSync(join(outputDir, 'graph.json'));
-}
-/**
- * Return the canonical path to graph.json inside an output directory.
- */
-export function getGraphPath(outputDir) {
-    return join(outputDir, 'graph.json');
-}
-//# sourceMappingURL=export.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/export.js.map

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package/packages/@monomind/cli/bundled-graph/dist/src/extract/index.d.ts

@@ -1,20 +0,0 @@
-import type { ClassifiedFile, ExtractionResult, BuildOptions } from '../types.js';
-/**
- * Extract graph nodes and edges from all classified files.
- *
- * Reads each file, checks the on-disk cache keyed by SHA-256 content hash,
- * dispatches to the appropriate language extractor, and merges all results
- * into a single ExtractionResult (nodes deduplicated by id, edges by source+target+relation).
- *
- * @param files      - Classified files to process (from the classify layer)
- * @param outputDir  - Directory used for cache storage (.monomind/graph by default)
- * @param options    - Build options (languages filter, maxFileSizeBytes, etc.)
- */
-export declare function extractAll(files: ClassifiedFile[], outputDir: string, options?: BuildOptions): Promise<ExtractionResult>;
-export type { LanguageExtractor } from './types.js';
-export { typescriptExtractor } from './languages/typescript.js';
-export { pythonExtractor } from './languages/python.js';
-export { goExtractor } from './languages/go.js';
-export { rustExtractor } from './languages/rust.js';
-export { isTreeSitterAvailable, tryLoadParser, walk, parseFile, parseFileFromDisk } from './tree-sitter-runner.js';
-//# sourceMappingURL=index.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/index.d.ts.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/extract/index.js

@@ -1,158 +0,0 @@
-import { readFileSync, mkdirSync } from 'fs';
-import { extname } from 'path';
-import { FileCache } from '../cache.js';
-import { typescriptExtractor } from './languages/typescript.js';
-import { pythonExtractor } from './languages/python.js';
-import { goExtractor } from './languages/go.js';
-import { rustExtractor } from './languages/rust.js';
-// ---- registry ----
-const EXTRACTORS = [
-    typescriptExtractor,
-    pythonExtractor,
-    goExtractor,
-    rustExtractor,
-];
-/** Build a lookup from file extension → extractor */
-const EXT_MAP = new Map(EXTRACTORS.flatMap((e) => e.extensions.map((ext) => [ext, e])));
-/** Build a lookup from language name → extractor */
-const LANG_MAP = new Map(EXTRACTORS.map((e) => [e.language, e]));
-function resolveExtractor(file) {
-    if (file.language) {
-        const byLang = LANG_MAP.get(file.language.toLowerCase());
-        if (byLang)
-            return byLang;
-    }
-    const ext = extname(file.path).toLowerCase();
-    return EXT_MAP.get(ext) ?? null;
-}
-// ---- result merging ----
-function mergeResults(results) {
-    const nodeMap = new Map();
-    const edgeSet = new Set();
-    const edges = [];
-    const errors = [];
-    let filesProcessed = 0;
-    let fromCache = 0;
-    for (const r of results) {
-        filesProcessed += r.filesProcessed;
-        fromCache += r.fromCache;
-        errors.push(...r.errors);
-        for (const node of r.nodes) {
-            // Deduplicate by id — keep the first occurrence
-            if (!nodeMap.has(node.id)) {
-                nodeMap.set(node.id, node);
-            }
-        }
-        for (const edge of r.edges) {
-            // Deduplicate edges by source+target+relation key
-            const key = `${edge.source}||${edge.target}||${edge.relation}`;
-            if (!edgeSet.has(key)) {
-                edgeSet.add(key);
-                edges.push(edge);
-            }
-        }
-    }
-    return {
-        nodes: Array.from(nodeMap.values()),
-        edges,
-        filesProcessed,
-        fromCache,
-        errors,
-    };
-}
-// ---- public API ----
-/**
- * Extract graph nodes and edges from all classified files.
- *
- * Reads each file, checks the on-disk cache keyed by SHA-256 content hash,
- * dispatches to the appropriate language extractor, and merges all results
- * into a single ExtractionResult (nodes deduplicated by id, edges by source+target+relation).
- *
- * @param files      - Classified files to process (from the classify layer)
- * @param outputDir  - Directory used for cache storage (.monomind/graph by default)
- * @param options    - Build options (languages filter, maxFileSizeBytes, etc.)
- */
-export async function extractAll(files, outputDir, options) {
-    const maxSize = options?.maxFileSizeBytes ?? 500 * 1024; // 500 KB
-    const langFilter = options?.languages?.map((l) => l.toLowerCase());
-    mkdirSync(outputDir, { recursive: true });
-    const cache = new FileCache(outputDir);
-    const results = [];
-    for (const file of files) {
-        // Skip files that are too large
-        if (file.sizeBytes > maxSize) {
-            results.push({
-                nodes: [],
-                edges: [],
-                filesProcessed: 1,
-                fromCache: 0,
-                errors: [`Skipped ${file.path}: file size ${file.sizeBytes} exceeds limit ${maxSize}`],
-            });
-            continue;
-        }
-        // Apply language filter
-        if (langFilter && langFilter.length > 0) {
-            const extractor = resolveExtractor(file);
-            const fileLang = (file.language ?? '').toLowerCase();
-            const extractorLang = extractor?.language ?? '';
-            if (!langFilter.includes(fileLang) && !langFilter.includes(extractorLang)) {
-                continue;
-            }
-        }
-        const extractor = resolveExtractor(file);
-        if (!extractor) {
-            // No extractor for this file type — skip silently
-            continue;
-        }
-        // Read content
-        let content;
-        try {
-            content = readFileSync(file.path, 'utf8');
-        }
-        catch (err) {
-            results.push({
-                nodes: [],
-                edges: [],
-                filesProcessed: 1,
-                fromCache: 0,
-                errors: [`Failed to read ${file.path}: ${err instanceof Error ? err.message : String(err)}`],
-            });
-            continue;
-        }
-        // Check cache using FileCache (keyed on filePath + content hash)
-        const cacheKey = cache.key(file.path, content);
-        const cached = cache.get(cacheKey);
-        if (cached) {
-            results.push({
-                ...cached,
-                filesProcessed: 1,
-                fromCache: 1,
-            });
-            continue;
-        }
-        // Extract
-        let result;
-        try {
-            result = extractor.extract(file.path, content);
-        }
-        catch (err) {
-            result = {
-                nodes: [],
-                edges: [],
-                filesProcessed: 1,
-                fromCache: 0,
-                errors: [`Extractor error for ${file.path}: ${err instanceof Error ? err.message : String(err)}`],
-            };
-        }
-        // Store in cache
-        cache.set(cacheKey, result);
-        results.push(result);
-    }
-    return mergeResults(results);
-}
-export { typescriptExtractor } from './languages/typescript.js';
-export { pythonExtractor } from './languages/python.js';
-export { goExtractor } from './languages/go.js';
-export { rustExtractor } from './languages/rust.js';
-export { isTreeSitterAvailable, tryLoadParser, walk, parseFile, parseFileFromDisk } from './tree-sitter-runner.js';
-//# sourceMappingURL=index.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/index.js.map

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package/packages/@monomind/cli/bundled-graph/dist/src/extract/languages/c.d.ts

@@ -1,3 +0,0 @@
-import type { LanguageExtractor } from '../types.js';
-export declare const cExtractor: LanguageExtractor;
-//# sourceMappingURL=c.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/languages/c.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"c.d.ts","sourceRoot":"","sources":["../../../../src/extract/languages/c.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AA0FrD,eAAO,MAAM,UAAU,EAAE,iBAQxB,CAAC"}

package/packages/@monomind/cli/bundled-graph/dist/src/extract/languages/c.js

@@ -1,88 +0,0 @@
-import { basename } from 'path';
-import { tryLoadParser, walk } from '../tree-sitter-runner.js';
-function loc(node) {
-    return `L${node.startPosition.row + 1}`;
-}
-function extractWithTreeSitter(filePath, content) {
-    const nodes = [];
-    const edges = [];
-    const errors = [];
-    const parser = tryLoadParser('c');
-    if (!parser)
-        return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
-    let tree;
-    try {
-        tree = parser.parse(content);
-    }
-    catch (err) {
-        errors.push(`tree-sitter parse error in ${filePath}: ${String(err)}`);
-        return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
-    }
-    walk(tree.rootNode, (n) => {
-        if (n.type === 'function_definition') {
-            const declarator = n.childForFieldName('declarator');
-            const nameNode = declarator?.childForFieldName('declarator') ?? declarator;
-            const name = nameNode?.type === 'identifier' ? nameNode.text : (nameNode?.childForFieldName('name')?.text ?? '');
-            if (name)
-                nodes.push({ id: name, label: name, fileType: 'code', sourceFile: filePath, sourceLocation: loc(n) });
-            return;
-        }
-        if (n.type === 'struct_specifier' || n.type === 'union_specifier' || n.type === 'enum_specifier') {
-            const nameNode = n.childForFieldName('name');
-            if (nameNode?.text) {
-                nodes.push({ id: nameNode.text, label: nameNode.text, fileType: 'code', sourceFile: filePath, sourceLocation: loc(n), nodeKind: n.type.replace('_specifier', '') });
-            }
-            return;
-        }
-        if (n.type === 'preproc_include') {
-            const pathNode = n.childForFieldName('path');
-            if (pathNode) {
-                const importPath = pathNode.text.replace(/^["<]|[">]$/g, '');
-                edges.push({ source: basename(filePath), target: importPath, relation: 'imports', confidence: 'EXTRACTED', sourceFile: filePath, sourceLocation: loc(n) });
-            }
-        }
-    });
-    return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
-}
-function extractWithRegex(filePath, content) {
-    const nodes = [];
-    const edges = [];
-    const lines = content.split('\n');
-    lines.forEach((line, idx) => {
-        const location = `L${idx + 1}`;
-        const trimmed = line.trim();
-        // #include
-        const includeMatch = trimmed.match(/^#include\s+["<]([^">]+)[">]/);
-        if (includeMatch) {
-            edges.push({ source: basename(filePath), target: includeMatch[1], relation: 'imports', confidence: 'EXTRACTED', sourceFile: filePath, sourceLocation: location });
-            return;
-        }
-        // struct / union / enum
-        const structMatch = trimmed.match(/^(?:typedef\s+)?(?:struct|union|enum)\s+(\w+)/);
-        if (structMatch) {
-            nodes.push({ id: structMatch[1], label: structMatch[1], fileType: 'code', sourceFile: filePath, sourceLocation: location });
-            return;
-        }
-        // function definition: return_type func_name(
-        // Heuristic: line not starting with # or //, contains word followed by ( at reasonable position
-        if (!trimmed.startsWith('#') && !trimmed.startsWith('//') && !trimmed.startsWith('*')) {
-            const funcMatch = trimmed.match(/^(?:[\w*\s]+\s)?(\w+)\s*\((?!\s*\))/);
-            if (funcMatch && funcMatch[1] && !['if', 'while', 'for', 'switch', 'return', 'sizeof', 'typeof'].includes(funcMatch[1])) {
-                // Only emit if previous non-empty line doesn't end with = or , (avoid call expressions)
-                nodes.push({ id: funcMatch[1], label: funcMatch[1], fileType: 'code', sourceFile: filePath, sourceLocation: location });
-            }
-        }
-    });
-    return { nodes, edges, filesProcessed: 1, fromCache: 0, errors: [] };
-}
-export const cExtractor = {
-    language: 'c',
-    extensions: ['.c', '.h'],
-    extract(filePath, content) {
-        const ts = extractWithTreeSitter(filePath, content);
-        if (ts.nodes.length > 0 || ts.edges.length > 0 || ts.errors.length > 0)
-            return ts;
-        return extractWithRegex(filePath, content);
-    },
-};
-//# sourceMappingURL=c.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/languages/c.js.map

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package/packages/@monomind/cli/bundled-graph/dist/src/extract/languages/cpp.d.ts

@@ -1,3 +0,0 @@
-import type { LanguageExtractor } from '../types.js';
-export declare const cppExtractor: LanguageExtractor;
-//# sourceMappingURL=cpp.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/languages/cpp.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"cpp.d.ts","sourceRoot":"","sources":["../../../../src/extract/languages/cpp.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AA6HrD,eAAO,MAAM,YAAY,EAAE,iBAQ1B,CAAC"}